Query psy1379
Match_columns 446
No_of_seqs 231 out of 304
Neff 6.0
Searched_HMMs 29240
Date Fri Aug 16 20:35:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1379.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1379hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dad_A FH1/FH2 domain-containi 99.9 1.3E-24 4.4E-29 218.0 10.0 162 263-438 133-315 (339)
2 3dad_A FH1/FH2 domain-containi 99.8 6.5E-21 2.2E-25 191.2 10.2 142 1-153 176-333 (339)
3 3eg5_B Protein diaphanous homo 97.4 0.0014 4.7E-08 67.0 12.7 172 3-188 138-328 (383)
4 3tpo_A Importin subunit alpha- 97.3 0.079 2.7E-06 55.2 25.6 318 4-420 95-416 (529)
5 2bnx_A Diaphanous protein homo 97.0 0.0053 1.8E-07 62.7 12.5 171 3-187 76-265 (386)
6 2f31_A Diaphanous protein homo 97.0 0.0034 1.2E-07 59.5 10.2 139 3-153 72-225 (233)
7 3ul1_B Importin subunit alpha- 96.9 0.15 5E-06 53.0 23.2 318 4-420 76-397 (510)
8 1wa5_B Importin alpha subunit; 95.7 1.9 6.3E-05 44.3 23.1 308 4-414 106-416 (530)
9 4b8j_A Importin subunit alpha- 95.4 1.6 5.5E-05 44.6 21.3 95 5-105 94-190 (528)
10 2jdq_A Importin alpha-1 subuni 94.8 3.5 0.00012 40.5 23.8 313 4-418 39-355 (450)
11 4db8_A Armadillo-repeat protei 93.7 1.9 6.5E-05 39.1 15.1 71 335-409 180-250 (252)
12 3now_A UNC-45 protein, SD10334 93.6 3.8 0.00013 45.6 19.8 116 7-133 401-546 (810)
13 2z6h_A Catenin beta-1, beta-ca 93.4 9.2 0.00032 40.4 21.9 311 23-413 11-339 (644)
14 4hxt_A De novo protein OR329; 92.8 0.69 2.4E-05 41.6 10.6 118 296-418 88-206 (252)
15 1wa5_B Importin alpha subunit; 92.4 7.2 0.00025 39.9 18.8 73 26-105 215-287 (530)
16 1xm9_A Plakophilin 1; armadill 91.0 15 0.0005 37.3 22.3 96 3-105 20-117 (457)
17 4b8j_A Importin subunit alpha- 90.5 16 0.00056 37.0 19.5 75 26-107 160-235 (528)
18 1xqr_A HSPBP1 protein; armadil 90.1 1.3 4.3E-05 43.2 9.7 96 4-105 101-197 (296)
19 4db6_A Armadillo repeat protei 89.0 2 6.9E-05 37.8 9.5 109 297-409 99-208 (210)
20 4db8_A Armadillo-repeat protei 87.9 5.4 0.00018 36.0 11.9 82 335-421 138-219 (252)
21 3tpo_A Importin subunit alpha- 87.9 13 0.00046 38.2 16.3 107 301-411 384-498 (529)
22 4hxt_A De novo protein OR329; 87.6 4 0.00014 36.4 10.8 99 309-411 59-158 (252)
23 4db6_A Armadillo repeat protei 87.0 3.9 0.00013 35.9 10.1 75 335-413 96-170 (210)
24 1jdh_A Beta-catenin; beta-cate 87.0 26 0.00091 35.0 21.6 68 336-408 461-528 (529)
25 2jdq_A Importin alpha-1 subuni 85.4 28 0.00097 33.8 18.3 75 25-106 106-181 (450)
26 3now_A UNC-45 protein, SD10334 84.2 57 0.0019 36.3 19.8 97 4-105 349-451 (810)
27 1jdh_A Beta-catenin; beta-cate 83.0 40 0.0014 33.6 23.8 110 299-414 232-343 (529)
28 1xqr_A HSPBP1 protein; armadil 82.7 3.4 0.00012 40.2 8.2 131 287-421 73-206 (296)
29 3g2s_A C-terminal fragment of 82.4 11 0.00037 33.2 10.6 95 76-182 49-143 (149)
30 1mhq_A ADP-ribosylation factor 81.9 13 0.00045 32.5 10.9 96 77-184 40-135 (148)
31 2z6g_A B-catenin; FULL-length, 80.4 70 0.0024 34.8 21.1 98 310-413 376-475 (780)
32 1juq_A ADP-ribosylation factor 77.8 15 0.0005 33.0 10.1 96 77-184 52-147 (171)
33 3eg5_B Protein diaphanous homo 77.6 12 0.00041 37.7 10.5 144 287-435 102-272 (383)
34 2z6g_A B-catenin; FULL-length, 75.7 95 0.0033 33.7 22.3 78 336-418 594-671 (780)
35 1elk_A Target of MYB1; superhe 75.4 30 0.001 30.3 11.3 94 76-182 54-150 (157)
36 2z6h_A Catenin beta-1, beta-ca 74.5 88 0.003 32.7 23.9 74 336-414 458-531 (644)
37 1x5b_A Signal transducing adap 74.2 21 0.00072 31.6 10.0 73 76-163 53-125 (163)
38 2qk1_A Protein STU2; STU2P, XM 70.7 34 0.0012 31.8 11.2 107 6-120 125-236 (249)
39 3rru_A TOM1L1 protein; structu 69.6 22 0.00074 31.3 8.9 137 19-180 9-148 (152)
40 1dvp_A HRS, hepatocyte growth 68.9 19 0.00065 33.2 8.9 93 77-184 44-137 (220)
41 3l6x_A Catenin delta-1; cateni 68.0 10 0.00035 40.6 7.6 115 4-128 374-494 (584)
42 3ul1_B Importin subunit alpha- 66.9 1.1E+02 0.0039 31.0 21.7 98 309-410 247-345 (510)
43 3zyq_A Hepatocyte growth facto 65.6 27 0.00094 32.4 9.3 86 77-182 47-138 (226)
44 3ldz_A STAM-1, signal transduc 64.6 24 0.00082 30.4 8.1 32 77-108 44-75 (140)
45 3tt9_A Plakophilin-2; cell adh 62.2 21 0.00073 33.4 7.8 70 338-409 11-80 (233)
46 1xm9_A Plakophilin 1; armadill 60.0 32 0.0011 34.8 9.3 98 310-411 18-117 (457)
47 3l6x_A Catenin delta-1; cateni 59.3 27 0.00093 37.3 8.9 88 326-420 42-129 (584)
48 4ffb_C Protein STU2; tubulin f 58.1 38 0.0013 31.5 8.9 90 5-108 123-216 (278)
49 4fdd_A Transportin-1; heat rep 57.9 2E+02 0.007 30.9 19.9 77 25-106 127-205 (852)
50 2f31_A Diaphanous protein homo 56.9 17 0.00057 33.8 6.1 53 381-433 150-204 (233)
51 3b2a_A TON_1937, putative unch 50.5 50 0.0017 31.7 8.1 76 337-418 35-112 (265)
52 3nmw_A APC variant protein; AR 50.3 22 0.00075 35.2 6.0 75 26-107 263-337 (354)
53 2qk2_A LP04448P; mini spindles 49.0 48 0.0016 29.9 7.8 92 5-106 35-129 (242)
54 1mhq_A ADP-ribosylation factor 48.3 47 0.0016 28.9 7.2 69 338-410 41-116 (148)
55 3nmw_A APC variant protein; AR 47.6 31 0.0011 34.1 6.7 70 352-421 97-167 (354)
56 3d0w_A YFLH protein; GRAM-posi 45.2 10 0.00036 31.5 2.2 24 164-188 66-89 (104)
57 3opb_A SWI5-dependent HO expre 45.1 3.5E+02 0.012 29.8 25.9 95 337-435 656-754 (778)
58 3tt9_A Plakophilin-2; cell adh 44.7 36 0.0012 31.8 6.2 103 4-115 29-133 (233)
59 3opb_A SWI5-dependent HO expre 44.5 47 0.0016 36.8 7.9 108 28-145 656-767 (778)
60 1x5b_A Signal transducing adap 43.9 48 0.0017 29.2 6.7 59 352-410 65-125 (163)
61 1juq_A ADP-ribosylation factor 43.7 53 0.0018 29.2 6.9 59 352-410 63-128 (171)
62 3ldz_A STAM-1, signal transduc 41.7 48 0.0017 28.4 6.1 58 352-409 55-113 (140)
63 3nmz_A APC variant protein; pr 41.4 43 0.0015 34.5 6.7 71 352-422 213-284 (458)
64 3nmz_A APC variant protein; pr 40.1 34 0.0012 35.2 5.7 73 27-106 380-452 (458)
65 2vgl_B AP-2 complex subunit be 39.8 57 0.002 34.0 7.5 85 5-99 141-226 (591)
66 3grl_A General vesicular trans 39.6 54 0.0018 35.6 7.3 169 8-187 42-243 (651)
67 2bnx_A Diaphanous protein homo 37.8 41 0.0014 33.8 5.8 53 381-433 154-208 (386)
68 3zyq_A Hepatocyte growth facto 37.1 46 0.0016 30.9 5.6 59 352-410 58-118 (226)
69 3b2a_A TON_1937, putative unch 36.6 69 0.0024 30.7 6.7 97 17-120 16-122 (265)
70 1dvp_A HRS, hepatocyte growth 35.7 54 0.0019 30.1 5.9 58 352-409 55-114 (220)
71 1qgr_A Protein (importin beta 34.8 3.4E+02 0.012 28.6 12.8 99 4-108 583-683 (876)
72 2qk1_A Protein STU2; STU2P, XM 34.6 1.2E+02 0.0041 27.9 8.2 97 5-107 36-136 (249)
73 2bpt_A Importin beta-1 subunit 31.4 4.8E+02 0.016 27.4 14.6 97 4-108 575-672 (861)
74 3g2s_A C-terminal fragment of 31.1 1E+02 0.0035 26.8 6.6 70 337-410 50-126 (149)
75 3grl_A General vesicular trans 29.9 90 0.0031 33.8 7.1 92 27-123 123-222 (651)
76 2qk2_A LP04448P; mini spindles 27.1 3.3E+02 0.011 24.1 10.9 76 328-414 91-166 (242)
77 2fv2_A RCD1 required for cell 25.9 1.1E+02 0.0039 29.3 6.3 120 20-153 40-172 (268)
78 2vgl_B AP-2 complex subunit be 24.6 1.9E+02 0.0066 29.9 8.5 73 25-107 120-192 (591)
79 4fdd_A Transportin-1; heat rep 24.0 1.5E+02 0.0053 31.8 7.8 90 24-120 43-135 (852)
80 2of3_A ZYG-9; multifunctional 22.4 2.5E+02 0.0085 26.7 8.0 62 43-112 180-244 (266)
81 1ibr_B P95, importin beta-1 su 21.7 3.1E+02 0.01 26.2 8.8 72 26-106 366-439 (462)
82 3vld_A DNA mismatch repair pro 21.2 2E+02 0.0067 30.2 7.4 69 333-406 71-141 (500)
83 1k1g_A SF1-BO isoform; splicin 21.2 59 0.002 27.8 3.0 57 383-441 71-128 (131)
84 3rru_A TOM1L1 protein; structu 20.0 1.1E+02 0.0039 26.6 4.7 67 28-103 55-129 (152)
No 1
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=99.91 E-value=1.3e-24 Score=218.02 Aligned_cols=162 Identities=14% Similarity=0.128 Sum_probs=149.7
Q ss_pred hhhhcCCCCccc-cchhhhccchHHHHHHHH-HhhhhhhhcccccchhhhhhHHHHHHHHHHhh-----hccccccchHH
Q psy1379 263 KVRLSGLPDTDT-LSSDVSGQVRLYFSIQFL-LDCFAVLVNHSQAGLCVMLAHCLLSFVELMDH-----GIVSWNILETV 335 (446)
Q Consensus 263 ~~k~~aL~~l~~-yS~aVtgin~t~fa~efl-~dgl~~l~~~~e~g~~~~La~~L~aF~eLm~~-----~i~swd~l~~~ 335 (446)
.+++.+|.++.. ++-|.+ ||.||+ ++|+..+.++++++.+++++|+|+||.+||+| |+++ ...
T Consensus 133 ~~lr~aLfsLk~~~q~D~~------Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs----~~~ 202 (339)
T 3dad_A 133 PELRRSLFSLKQIFQEDKD------LVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVA----HSD 202 (339)
T ss_dssp HHHHHHHHHHHHHHHTCTT------HHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHH----CHH
T ss_pred HHHHHHHHHHHHHhhcchH------HHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhC----CHH
Confidence 345666777777 888999 999999 99999999999999999999999999999999 7777 689
Q ss_pred HHHHHHHhhcCCCCCCchHHHHHHHHHHhhhhhcCchhhhHHhhhcc----------hhhhhhhcc---cCChHHHHhHH
Q psy1379 336 FIKTVADHVNNPNPVPEKEIVQASLSILESIALNSVGKFSQVENHLT----------LTNLVMHLQ---NQSPIIQQNAI 402 (446)
Q Consensus 336 Fikki~~~vn~~~~~~d~~il~~~l~iLE~~vl~s~~~~~~v~~Ev~----------l~~l~~~lq---~~~~~~~~~a~ 402 (446)
||++++++++. .++.|++.||+||+++|.+|+..+..|.++++ +++|+.||+ ++|+++|+|||
T Consensus 203 fI~~lyslv~s----~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~am 278 (339)
T 3dad_A 203 TIQWLYTLCAS----LSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTV 278 (339)
T ss_dssp HHHHHHHGGGC----SCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHH
T ss_pred HHHHHHHHHcC----ccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHH
Confidence 99999999984 48999999999999999999999999999999 999999999 89999999999
Q ss_pred HHHHHHhccCCchh-HHHhhHhhhhhhhHHHHHhccc
Q psy1379 403 ALINALFIKAEPSK-RKVISATMCSKQVRNAILTSVL 438 (446)
Q Consensus 403 al~nal~~~a~~~~-r~~~~~~l~~~~~r~~i~~~ii 438 (446)
+|||++|.+||+.+ |.+|++.|+++++|++|.+++=
T Consensus 279 tLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~ 315 (339)
T 3dad_A 279 TLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLG 315 (339)
T ss_dssp HHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHS
T ss_pred HHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHh
Confidence 99999999999866 9999999999999999999763
No 2
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=99.83 E-value=6.5e-21 Score=191.23 Aligned_cols=142 Identities=13% Similarity=0.101 Sum_probs=126.1
Q ss_pred ChhhHHHHHHHHHhcCCcccccC--chHHHHHHHHhhcCCCCCCCchhhhHHHHHHHHHhhCCCCCccchhhhhcccc--
Q psy1379 1 MLAHCLLSFVELMDHGIVSWNIL--ETVFIKTVADHVNNPNPVPEKEIVQASLSILESIALNSVGKFSQFSQVENHLT-- 76 (446)
Q Consensus 1 ~Lay~L~a~~~Lme~~~~~W~~l--~~~fI~ki~~~v~~~~~~~~~~i~~~alsIL~~~V~~s~~~y~gf~~v~~~v~-- 76 (446)
+++|+|+||++||+|. .||+.+ ++.||++|+++|++ .+.+|+|+||+||+.+|..|+..| ..|.++|+
T Consensus 176 ~q~Y~L~AL~~LM~~v-~Gm~gvvs~~~fI~~lyslv~s----~~~~V~k~AL~LL~v~V~~se~~~---~lv~~av~~v 247 (339)
T 3dad_A 176 YQSYILRALGQLMLFV-DGMLGVVAHSDTIQWLYTLCAS----LSRLVVKTALKLLLVFVEYSENNA---PLFIRAVNSV 247 (339)
T ss_dssp HHHHHHHHHHHHTTSH-HHHHHHHHCHHHHHHHHHGGGC----SCHHHHHHHHHHHHHHHHHCGGGH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcc-ccccchhCCHHHHHHHHHHHcC----ccHHHHHHHHHHHHHHHccCcccc---hHHHHHHHHh
Confidence 4799999999999994 477543 79999999999995 479999999999999999998665 99999998
Q ss_pred --------hhHHhhhcc---CCChHHHHhHHHHHHHHhhccCChh-hHHHHHHhhhhhhHHHHHHhhhcCCCCCCchhhh
Q psy1379 77 --------LTNLVMHLQ---NQSPIIQQNAIALINALFIKAEPSK-RKVISATMCSKQVRNAILTSVLQPSGGQVGAEMA 144 (446)
Q Consensus 77 --------~~~lv~~L~---~~d~~iq~nalaLiNaL~~~a~~~~-~~~~~~~L~~~~~r~~v~~~ii~~~~~~~~~e~a 144 (446)
+++|+.+|+ ++|.++|.|||+|||+++.++++.+ |.+++++|+++|+++.|.++ + ++...+.|+.
T Consensus 248 ~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~-l--~~~~~~~~l~ 324 (339)
T 3dad_A 248 ASTTGAPPWANLVSILEEKNGADPELLVYTVTLINKTLAALPDQDSFYDVTDALEQQGMEALVQRH-L--GTAGTDVDLR 324 (339)
T ss_dssp HHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHH-H--SCTTSCHHHH
T ss_pred hhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHH-H--hccCCCHHHH
Confidence 999999998 8999999999999999999999866 99999999999999999985 3 3343567999
Q ss_pred hcchHHHHH
Q psy1379 145 HQLYVLQTL 153 (446)
Q Consensus 145 h~L~~~Q~l 153 (446)
.||..|+.-
T Consensus 325 ~Ql~iyE~~ 333 (339)
T 3dad_A 325 TQLVLYENA 333 (339)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988874
No 3
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=97.36 E-value=0.0014 Score=67.03 Aligned_cols=172 Identities=14% Similarity=0.146 Sum_probs=126.3
Q ss_pred hhHHHHHHHHHhcCCcccccC--chHHHHHHHHhhcCCCCCCCchhhhHHHHHHHHHhhCCC-CCccchhhhhcccc---
Q psy1379 3 AHCLLSFVELMDHGIVSWNIL--ETVFIKTVADHVNNPNPVPEKEIVQASLSILESIALNSV-GKFSQFSQVENHLT--- 76 (446)
Q Consensus 3 ay~L~a~~~Lme~~~~~W~~l--~~~fI~ki~~~v~~~~~~~~~~i~~~alsIL~~~V~~s~-~~y~gf~~v~~~v~--- 76 (446)
.+++.||-.+|... .|-+.+ .+..|..++..+.+. .+.+...++-||..++.-+. .+ |+..|-++++
T Consensus 138 ~~~l~CLkalmN~~-~G~~~vl~~~~~i~~l~~~L~s~----~~~~~~~aleLL~~lc~~~~~~g--G~~~VL~Al~~~~ 210 (383)
T 3eg5_B 138 HEIIRCLKAFMNNK-FGIKTMLETEEGILLLVRAMDPA----VPNMMIDAAKLLSALCILPQPED--MNERVLEAMTERA 210 (383)
T ss_dssp HHHHHHHHHHTSSH-HHHHHHHTCSSHHHHHHHTCCTT----SHHHHHHHHHHHHHHHTCCSSTT--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcch-hhHHHHHcChHHHHHHHHHhCCC----chHHHHHHHHHHHHHHhCcCcCC--cHHHHHHHHHHHH
Confidence 46889999999863 244432 577899999998874 67888889999988776653 22 3577766653
Q ss_pred -------hhHHhhhccC-CChHHHHhHHHHHHHHhhccCC-hhhHHHHHHhhhhhhHHHHHHhhhcCCCCCCchhhhhcc
Q psy1379 77 -------LTNLVMHLQN-QSPIIQQNAIALINALFIKAEP-SKRKVISATMCSKQVRNAILTSVLQPSGGQVGAEMAHQL 147 (446)
Q Consensus 77 -------~~~lv~~L~~-~d~~iq~nalaLiNaL~~~a~~-~~~~~~~~~L~~~~~r~~v~~~ii~~~~~~~~~e~ah~L 147 (446)
|..+|..|.+ .+.+.+.++|+|||+++..+++ ..|-.+-..+...|+.+.+-+ ++ ... .+++-.||
T Consensus 211 ~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~--lr-~~~--~~~L~~Qi 285 (383)
T 3eg5_B 211 EMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQE--LR-EIE--NEDMKVQL 285 (383)
T ss_dssp HHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHH--HT-TSC--CHHHHHHH
T ss_pred HhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCChHHHHHH--Hh-cCC--ChhHHHHH
Confidence 8999999987 7999999999999999998876 457799999999999988766 44 322 46788888
Q ss_pred hHHHHHHHHHHHHHhc----ccCCCCCHHHHHHHHHHHHHhcccc
Q psy1379 148 YVLQTLTLGLLEQRMN----TKMDPQDQDAHDKIKELRRVAFEID 188 (446)
Q Consensus 148 ~~~Q~l~l~~Le~r~~----~~~d~~~~~h~~~L~~Lw~~a~p~~ 188 (446)
-.|....-...++... +..|.+|| .+....||.......
T Consensus 286 ~~fe~~~~eD~~el~~r~~~~~~d~~d~--~~~~~~l~~~~~~t~ 328 (383)
T 3eg5_B 286 CVFDEQGDEDFFDLKGRLDDIRMEMDDF--GEVFQIILNTVKDSK 328 (383)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCSH--HHHHHHHHHHTTTST
T ss_pred HHHHHHHHHhHHHHHhhccccCcCcCCH--HHHHHHHHHHhcCCc
Confidence 8887776554443322 23455664 567888888776543
No 4
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=97.30 E-value=0.079 Score=55.20 Aligned_cols=318 Identities=13% Similarity=0.086 Sum_probs=174.9
Q ss_pred hHHHHHHHHHhcCC-cccc-cCchHHHHHHHHhhcCCCCCCCchhhhHHHHHHHHHhhCCCCCccchhhhhcccchhHHh
Q psy1379 4 HCLLSFVELMDHGI-VSWN-ILETVFIKTVADHVNNPNPVPEKEIVQASLSILESIALNSVGKFSQFSQVENHLTLTNLV 81 (446)
Q Consensus 4 y~L~a~~~Lme~~~-~~W~-~l~~~fI~ki~~~v~~~~~~~~~~i~~~alsIL~~~V~~s~~~y~gf~~v~~~v~~~~lv 81 (446)
.|+++|..|+.... -..+ .+....|.+++.++... .+..+...|..+|.++..+++..- ..|.+.=.++.|+
T Consensus 95 ~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~---~~~~~q~~Aa~aL~nia~~~~~~~---~~vv~~Gaip~Lv 168 (529)
T 3tpo_A 95 QATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKT---DCSPIQFESAWALTNIASGTSEQT---KAVVDGGAIPAFI 168 (529)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCT---TCHHHHHHHHHHHHHHHTSCHHHH---HHHHHTTHHHHHH
T ss_pred HHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCC---CCHHHHHHHHHHHHHHHcCCHHHH---HHHHHCCCHHHHH
Confidence 36777777775432 1122 34567788899999775 467888889999999988776433 4555555688999
Q ss_pred hhccCCChHHHHhHHHHHHHHhhccCChhhHHHHHHhhhhhhHHHHHHhhhcCCCCCCchhhhhcchHHHHHHHHHHHHH
Q psy1379 82 MHLQNQSPIIQQNAIALINALFIKAEPSKRKVISATMCSKQVRNAILTSVLQPSGGQVGAEMAHQLYVLQTLTLGLLEQR 161 (446)
Q Consensus 82 ~~L~~~d~~iq~nalaLiNaL~~~a~~~~~~~~~~~L~~~~~r~~v~~~ii~~~~~~~~~e~ah~L~~~Q~l~l~~Le~r 161 (446)
..|++.+..++.+|+..+-.|-.+. ++.-+.+-+.|....+.. ++. ... . .. .-..+++.....+..-
T Consensus 169 ~LL~s~~~~v~e~A~~aL~nLa~~~-----~~~r~~i~~~g~i~~Ll~-lL~-~~~-~-~~---~~~~~~~~a~~~L~nl 236 (529)
T 3tpo_A 169 SLLASPHAHISEQAVWALGNIAGAG-----SAFRDLVIKHGAIDPLLA-LLA-VPD-L-ST---LACGYLRNLTWTLSNL 236 (529)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHTTC-----HHHHHHHHHTTCHHHHHH-TTC-SSC-G-GG---SCHHHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHhccC-----HHHHHHHHHcCCcHHHHH-HHh-ccc-h-hH---hHHHHHHHHHHHHHHH
Confidence 9999999999999988777765432 122233344566666666 443 211 1 11 1122233323333333
Q ss_pred hcccCCCCCHH-HHHHHHHHHHHhccccccCCCCCccccccCCCchhhhhhccccCCCcccccccCCchHhhHhHHHHHH
Q psy1379 162 MNTKMDPQDQD-AHDKIKELRRVAFEIDVIGGVDASSKRQMGGYAKDYKKLGFKYDINPAQDFTETPPGMLALDCMIYFA 240 (446)
Q Consensus 162 ~~~~~d~~~~~-h~~~L~~Lw~~a~p~~~~~~~~~~~~R~~~~~s~~Wk~LGFq~~~dP~~DFr~~~~G~LgL~nL~yFa 240 (446)
..-+-...... ....+..|..+... .|| +.+ .-+..+|.|.+
T Consensus 237 ~~~~~~~~~~~~~~~~lp~L~~LL~~------------------------------~~~--~v~-----~~a~~aL~~l~ 279 (529)
T 3tpo_A 237 CRNKNPAPPLDAVEQILPTLVRLLHH------------------------------NDP--EVL-----ADSCWAISYLT 279 (529)
T ss_dssp HCCCTTCCCHHHHHHHHHHHHHHTTS------------------------------SCH--HHH-----HHHHHHHHHHH
T ss_pred HhcccchhhHHHHhhHHHHHHHHhcC------------------------------CcH--HHH-----HHHHHHHHHhh
Confidence 32221122211 12334344443321 111 111 12445556666
Q ss_pred HhChHHHHHHHHhhhcchhhhhhhhhcCCCCccccchhhhccchHHHHHHHHHhhhhhhhcccccchhhhhhHHHHHHHH
Q psy1379 241 RNHPEAYTKQKATKKTLEGTAEKVRLSGLPDTDTLSSDVSGQVRLYFSIQFLLDCFAVLVNHSQAGLCVMLAHCLLSFVE 320 (446)
Q Consensus 241 ~~~~d~fskllleQ~~~~~~q~~~k~~aL~~l~~yS~aVtgin~t~fa~efl~dgl~~l~~~~e~g~~~~La~~L~aF~e 320 (446)
...++... .+......+ .+.+++. ++...+..++++++-.
T Consensus 280 ~~~~~~~~-~v~~~g~i~----------------------------~Lv~lL~-----------~~~~~v~~~a~~aL~n 319 (529)
T 3tpo_A 280 DGPNERIE-MVVKKGVVP----------------------------QLVKLLG-----------ATELPIVTPALRAIGN 319 (529)
T ss_dssp SSCHHHHH-HHHTTTCHH----------------------------HHHHHHT-----------CSCHHHHHHHHHHHHH
T ss_pred hhhhhhHH-HHHhccchH----------------------------HHHHHhc-----------CCChhHHHHHHHHHHH
Confidence 54444322 222111110 1222220 1111122333333333
Q ss_pred HHhhhcc-ccccchHHHHHHHHHhhcCCCCCCchHHHHHHHHHHhhhhhcCchhhhHHhhhcchhhhhhhcccCChHHHH
Q psy1379 321 LMDHGIV-SWNILETVFIKTVADHVNNPNPVPEKEIVQASLSILESIALNSVGKFSQVENHLTLTNLVMHLQNQSPIIQQ 399 (446)
Q Consensus 321 Lm~~~i~-swd~l~~~Fikki~~~vn~~~~~~d~~il~~~l~iLE~~vl~s~~~~~~v~~Ev~l~~l~~~lq~~~~~~~~ 399 (446)
+.+++.. .-..+....+..++.+++.+ +..+...+...|-++..+++...+.|...=-++.|+..|+..+..+|.
T Consensus 320 l~~~~~~~~~~i~~~g~l~~L~~LL~~~----~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~ 395 (529)
T 3tpo_A 320 IVTGTDEQTQKVIDAGALAVFPSLLTNP----KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQK 395 (529)
T ss_dssp HTTSCHHHHHHHHHTTGGGGHHHHTTCS----SHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHH
T ss_pred HHccchHHHHHHhhcccHHHHHHHHcCC----CHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHH
Confidence 3222110 01111122233345566543 567888999999999998887677776665688899999999999999
Q ss_pred hHHHHHHHHhccCCchhHHHh
Q psy1379 400 NAIALINALFIKAEPSKRKVI 420 (446)
Q Consensus 400 ~a~al~nal~~~a~~~~r~~~ 420 (446)
.|...|--|..++++...+.+
T Consensus 396 ~A~~aL~nl~~~~~~~~~~~l 416 (529)
T 3tpo_A 396 AAAWAITNYTSGGTVEQIVYL 416 (529)
T ss_dssp HHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHH
Confidence 998777777777777655543
No 5
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=96.99 E-value=0.0053 Score=62.72 Aligned_cols=171 Identities=13% Similarity=0.145 Sum_probs=119.0
Q ss_pred hhHHHHHHHHHhcCCcccccC--chHHHHHHHHhhcCCCCCCCchhhhHHHHHHHHHhhCCCCCccc-hhhhhccc----
Q psy1379 3 AHCLLSFVELMDHGIVSWNIL--ETVFIKTVADHVNNPNPVPEKEIVQASLSILESIALNSVGKFSQ-FSQVENHL---- 75 (446)
Q Consensus 3 ay~L~a~~~Lme~~~~~W~~l--~~~fI~ki~~~v~~~~~~~~~~i~~~alsIL~~~V~~s~~~y~g-f~~v~~~v---- 75 (446)
.+++.|+-.+|... .|-+.+ .+..|..++..+++. .+.+...++.+|..++.-+.. +| +..|-+++
T Consensus 76 ~~~l~CLkalmN~~-~Gl~~vl~~~~~i~~l~~sL~s~----~~~~r~~vleLL~alc~~~~~--~G~~~~VL~Al~~~~ 148 (386)
T 2bnx_A 76 HEIIRCLKAFMNNK-FGIKTMLETEEGILLLVRAMDPA----VPNMMIDAAKLLSALCILPQP--EDMNERVLEAMTERA 148 (386)
T ss_dssp HHHHHHHHHHTSSH-HHHHHHHHSSSHHHHHHHTCCTT----SHHHHHHHHHHHHHHHTCCSS--TTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCH-HHHHHHHcCcHHHHHHHHHhCCC----CchHHHHHHHHHHHHHcCCCC--CChHHHHHHHHHHHH
Confidence 46788888888763 244433 466788888888764 678888899999887765542 13 35554443
Q ss_pred ------chhHHhhhcc-CCChHHHHhHHHHHHHHhhccCC-hhhHHHHHHhhhhhhHHHHHHhhhcCCCCCCchhhhhcc
Q psy1379 76 ------TLTNLVMHLQ-NQSPIIQQNAIALINALFIKAEP-SKRKVISATMCSKQVRNAILTSVLQPSGGQVGAEMAHQL 147 (446)
Q Consensus 76 ------~~~~lv~~L~-~~d~~iq~nalaLiNaL~~~a~~-~~~~~~~~~L~~~~~r~~v~~~ii~~~~~~~~~e~ah~L 147 (446)
.|..+|..|. +.+.+.+..+|+|||+|+..+++ ..|-.+-..+...|+-+.+-+ ++ ... .+++--||
T Consensus 149 ~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~~il~~--Lr-~~~--~~~L~~Qi 223 (386)
T 2bnx_A 149 EMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQE--LR-EIE--NEDMKVQL 223 (386)
T ss_dssp HHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHHHH--HT-TCC--CHHHHHHH
T ss_pred HhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHHH--Hh-ccC--ChhHHHHH
Confidence 4788999998 58899999999999999999887 457799999999999988765 33 322 46777777
Q ss_pred hHHHHHHHHHHHHHh----cccCCCCCHHHHHHHHHHHHHhccc
Q psy1379 148 YVLQTLTLGLLEQRM----NTKMDPQDQDAHDKIKELRRVAFEI 187 (446)
Q Consensus 148 ~~~Q~l~l~~Le~r~----~~~~d~~~~~h~~~L~~Lw~~a~p~ 187 (446)
=.|....-...++.. .+..|.+|| .+....||......
T Consensus 224 ~~fe~~~~eD~~el~~r~~~i~~d~~d~--~~~~~~l~~~~~~t 265 (386)
T 2bnx_A 224 CVFDEQGDEDFFDLKGRLDDIRMEMDDF--GEVFQIILNTVKDS 265 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCCH--HHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHhhhhcCCCCCCCH--HHHHHHHHHHHcCC
Confidence 777766543332221 233455555 46677777766543
No 6
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=96.96 E-value=0.0034 Score=59.54 Aligned_cols=139 Identities=15% Similarity=0.176 Sum_probs=100.0
Q ss_pred hhHHHHHHHHHhcCCcccccC--chHHHHHHHHhhcCCCCCCCchhhhHHHHHHHHHhhCCCCCccc-hhhhhcc-----
Q psy1379 3 AHCLLSFVELMDHGIVSWNIL--ETVFIKTVADHVNNPNPVPEKEIVQASLSILESIALNSVGKFSQ-FSQVENH----- 74 (446)
Q Consensus 3 ay~L~a~~~Lme~~~~~W~~l--~~~fI~ki~~~v~~~~~~~~~~i~~~alsIL~~~V~~s~~~y~g-f~~v~~~----- 74 (446)
-+++.|+-.+|... .|-+.+ .+..|..++..+++ +.+.+...++.+|..++.-+.. +| +..|-++
T Consensus 72 ~~~l~CLkalmn~~-~G~~~vl~~~~~i~~l~~~L~s----~~~~~r~~~leLL~~lc~~~~~--~G~~~~VL~Al~~~~ 144 (233)
T 2f31_A 72 HEIIRCLKAFMNNK-FGIKTMLETEEGILLLVRAMDP----AVPNMMIDAAKLLSALCILPQP--EDMNERVLEAMTERA 144 (233)
T ss_dssp HHHHHHHHHHTSSH-HHHHHHHTSSSHHHHHHTTCCT----TSHHHHHHHHHHHHHHHTCSSS--SCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCh-HHHHHHHcCcHHHHHHHHHhCC----CCchHHHHHHHHHHHHHhCCCC--CChHHHHHHHHHHHH
Confidence 46788888888763 244432 46678889888875 4678888899999877665541 13 3555433
Q ss_pred -----cchhHHhhhcc-CCChHHHHhHHHHHHHHhhccCC-hhhHHHHHHhhhhhhHHHHHHhhhcCCCCCCchhhhhcc
Q psy1379 75 -----LTLTNLVMHLQ-NQSPIIQQNAIALINALFIKAEP-SKRKVISATMCSKQVRNAILTSVLQPSGGQVGAEMAHQL 147 (446)
Q Consensus 75 -----v~~~~lv~~L~-~~d~~iq~nalaLiNaL~~~a~~-~~~~~~~~~L~~~~~r~~v~~~ii~~~~~~~~~e~ah~L 147 (446)
..|..+|..|. +.+.+.+..+|+|||+++..+++ ..|-.+-..+...|+.+.+-+ ++ ... .+++.-|+
T Consensus 145 ~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~--l~-~~~--~~~L~~Qi 219 (233)
T 2f31_A 145 EMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQE--LR-EIE--NEDMKVQL 219 (233)
T ss_dssp HHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHH--HH-HCC--CHHHHHHH
T ss_pred HhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHHH--Hh-ccC--CHHHHHHH
Confidence 35889999998 48889999999999999999876 457789999999999987755 33 211 35666666
Q ss_pred hHHHHH
Q psy1379 148 YVLQTL 153 (446)
Q Consensus 148 ~~~Q~l 153 (446)
=.|...
T Consensus 220 ~~fe~~ 225 (233)
T 2f31_A 220 CVFDEQ 225 (233)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555554
No 7
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=96.93 E-value=0.15 Score=53.04 Aligned_cols=318 Identities=13% Similarity=0.098 Sum_probs=167.2
Q ss_pred hHHHHHHHHHhcCC-ccc-ccCchHHHHHHHHhhcCCCCCCCchhhhHHHHHHHHHhhCCCCCccchhhhhcccchhHHh
Q psy1379 4 HCLLSFVELMDHGI-VSW-NILETVFIKTVADHVNNPNPVPEKEIVQASLSILESIALNSVGKFSQFSQVENHLTLTNLV 81 (446)
Q Consensus 4 y~L~a~~~Lme~~~-~~W-~~l~~~fI~ki~~~v~~~~~~~~~~i~~~alsIL~~~V~~s~~~y~gf~~v~~~v~~~~lv 81 (446)
.|.++|..|+.... -.. +.+....|-+.|+++... .+..+...|...|.++...++..- +.|-+.=.++.||
T Consensus 76 ~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~---~~~~lq~~Aa~aL~nias~~~e~~---~~vv~~GaIp~Lv 149 (510)
T 3ul1_B 76 QATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKT---DCSPIQFESAWALTNIASGTSEQT---KAVVDGGAIPAFI 149 (510)
T ss_dssp HHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCT---TCHHHHHHHHHHHHHHHTSCHHHH---HHHHHTTHHHHHH
T ss_pred HHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCC---CCHHHHHHHHHHHHHHhcCCHHHH---HHHHHCCCHHHHH
Confidence 36677777775321 112 234555778889998764 457888889999999987765432 4444444588999
Q ss_pred hhccCCChHHHHhHHHHHHHHhhccCChhhHHHHHHhhhhhhHHHHHHhhhcCCCCCCchhhhhcchHHHHHHHHHHHHH
Q psy1379 82 MHLQNQSPIIQQNAIALINALFIKAEPSKRKVISATMCSKQVRNAILTSVLQPSGGQVGAEMAHQLYVLQTLTLGLLEQR 161 (446)
Q Consensus 82 ~~L~~~d~~iq~nalaLiNaL~~~a~~~~~~~~~~~L~~~~~r~~v~~~ii~~~~~~~~~e~ah~L~~~Q~l~l~~Le~r 161 (446)
+.|++.+.+++.+|+..+-.|-.+.+ +.-+.+-+.|....+.. +++ .. +....-..+++.....+..-
T Consensus 150 ~lL~s~~~~v~e~A~~aL~nLa~d~~-----~~r~~v~~~G~i~~Ll~-lL~-~~-----~~~~~~~~~~~~a~~~L~nl 217 (510)
T 3ul1_B 150 SLLASPHAHISEQAVWALGNIAGDGS-----AFRDLVIKHGAIDPLLA-LLA-VP-----DLSTLACGYLRNLTWTLSNL 217 (510)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHTTCH-----HHHHHHHHTTCHHHHHH-HTC-SS-----CGGGSCHHHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHHhCCH-----HHHHHHHHcCChHHHHH-HHH-hc-----cchhhhHHHHHHHHHHHHHH
Confidence 99999999999999888877765321 22333445566666666 553 21 11111122222222333322
Q ss_pred hcccCCCCCHH-HHHHHHHHHHHhccccccCCCCCccccccCCCchhhhhhccccCCCcccccccCCchHhhHhHHHHHH
Q psy1379 162 MNTKMDPQDQD-AHDKIKELRRVAFEIDVIGGVDASSKRQMGGYAKDYKKLGFKYDINPAQDFTETPPGMLALDCMIYFA 240 (446)
Q Consensus 162 ~~~~~d~~~~~-h~~~L~~Lw~~a~p~~~~~~~~~~~~R~~~~~s~~Wk~LGFq~~~dP~~DFr~~~~G~LgL~nL~yFa 240 (446)
..-+-...... ....+.-|..+... .|| +.+ .-+..+|.|.+
T Consensus 218 ~~~~~~~~~~~~~~~~lp~L~~LL~~------------------------------~~~--~v~-----~~A~~aL~~L~ 260 (510)
T 3ul1_B 218 CRNKNPAPPLDAVEQILPTLVRLLHH------------------------------NDP--EVL-----ADSCWAISYLT 260 (510)
T ss_dssp HCCCSSCCCHHHHHHHHHHHHHHTTC------------------------------SCH--HHH-----HHHHHHHHHHT
T ss_pred hhcccchhHHHHHHhHHHHHHHHHhc------------------------------CCH--HHH-----HHHHHHHHHHh
Confidence 22221111111 12233333333211 111 112 12334444555
Q ss_pred HhChHHHHHHHHhhhcchhhhhhhhhcCCCCccccchhhhccchHHHHHHHHHhhhhhhhcccccchhhhhhHHHHHHHH
Q psy1379 241 RNHPEAYTKQKATKKTLEGTAEKVRLSGLPDTDTLSSDVSGQVRLYFSIQFLLDCFAVLVNHSQAGLCVMLAHCLLSFVE 320 (446)
Q Consensus 241 ~~~~d~fskllleQ~~~~~~q~~~k~~aL~~l~~yS~aVtgin~t~fa~efl~dgl~~l~~~~e~g~~~~La~~L~aF~e 320 (446)
...++. .+.+......+ ...+++ ..+...+...+++++-.
T Consensus 261 ~~~~~~-~~~i~~~g~i~----------------------------~Lv~lL-----------~~~~~~v~~~al~aL~n 300 (510)
T 3ul1_B 261 DGPNER-IEMVVKKGVVP----------------------------QLVKLL-----------GATELPIVTPALRAIGN 300 (510)
T ss_dssp SSCHHH-HHHHHTTTCHH----------------------------HHHHHH-----------TCSCHHHHHHHHHHHHH
T ss_pred hchhhh-HHHHHhcccch----------------------------hhhhhh-----------cCCChhhhhHHHHHHHH
Confidence 433332 22221111110 122222 11111222333333333
Q ss_pred HHhhhcc-ccccchHHHHHHHHHhhcCCCCCCchHHHHHHHHHHhhhhhcCchhhhHHhhhcchhhhhhhcccCChHHHH
Q psy1379 321 LMDHGIV-SWNILETVFIKTVADHVNNPNPVPEKEIVQASLSILESIALNSVGKFSQVENHLTLTNLVMHLQNQSPIIQQ 399 (446)
Q Consensus 321 Lm~~~i~-swd~l~~~Fikki~~~vn~~~~~~d~~il~~~l~iLE~~vl~s~~~~~~v~~Ev~l~~l~~~lq~~~~~~~~ 399 (446)
+..++.. .-..+....+..++.+++.+ +..+...+...|-++..+++...+.|...=-++.|+..++..+..+|.
T Consensus 301 l~~~~~~~~~~i~~~g~l~~L~~LL~~~----~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~ 376 (510)
T 3ul1_B 301 IVTGTDEQTQKVIDAGALAVFPSLLTNP----KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQK 376 (510)
T ss_dssp HTTSCHHHHHHHHHTTGGGGCC-CTTCS----SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHH
T ss_pred hhcCCHHHHHHHhhccchHHHHHHhcCC----CHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHH
Confidence 3221100 00000111111222344332 567889999999999998887777777766688899999999999999
Q ss_pred hHHHHHHHHhccCCchhHHHh
Q psy1379 400 NAIALINALFIKAEPSKRKVI 420 (446)
Q Consensus 400 ~a~al~nal~~~a~~~~r~~~ 420 (446)
.|...|--|..++++..+..+
T Consensus 377 ~Aa~aL~Nl~~~~~~~~~~~L 397 (510)
T 3ul1_B 377 EAAWAITNYTSGGTVEQIVYL 397 (510)
T ss_dssp HHHHHHHHHHHHCCHHHHHHH
T ss_pred HHHHHHHHHHccCCHHHHHHH
Confidence 988777777777777665543
No 8
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=95.73 E-value=1.9 Score=44.34 Aligned_cols=308 Identities=10% Similarity=0.063 Sum_probs=161.1
Q ss_pred hHHHHHHHHHhcC-Cccccc-CchHHHHHHHHhhcCCCCCCCchhhhHHHHHHHHHhhCCCCCccchhhhhcccchhHHh
Q psy1379 4 HCLLSFVELMDHG-IVSWNI-LETVFIKTVADHVNNPNPVPEKEIVQASLSILESIALNSVGKFSQFSQVENHLTLTNLV 81 (446)
Q Consensus 4 y~L~a~~~Lme~~-~~~W~~-l~~~fI~ki~~~v~~~~~~~~~~i~~~alsIL~~~V~~s~~~y~gf~~v~~~v~~~~lv 81 (446)
.|+.+|..++..+ ...++. +....|..++.++... .+..+...|...|..+...++... ..+...-.++.|+
T Consensus 106 ~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~---~~~~v~~~A~~~L~~l~~~~~~~~---~~~~~~g~i~~Lv 179 (530)
T 1wa5_B 106 SATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMREN---QPEMLQLEAAWALTNIASGTSAQT---KVVVDADAVPLFI 179 (530)
T ss_dssp HHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTT---SCHHHHHHHHHHHHHHTTSCHHHH---HHHHHTTCHHHHH
T ss_pred HHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCC---CCHHHHHHHHHHHHHHhCCCHHHH---HHHHHCCCHHHHH
Confidence 4667777777653 122222 2345677888888764 368888899999999987654322 3343444588999
Q ss_pred hhccCCChHHHHhHHHHHHHHhhccCChhhHHHHHHhhhhhhHHHHHHhhhcCCCCCCchhhhhcchHHHHHHHHHHHHH
Q psy1379 82 MHLQNQSPIIQQNAIALINALFIKAEPSKRKVISATMCSKQVRNAILTSVLQPSGGQVGAEMAHQLYVLQTLTLGLLEQR 161 (446)
Q Consensus 82 ~~L~~~d~~iq~nalaLiNaL~~~a~~~~~~~~~~~L~~~~~r~~v~~~ii~~~~~~~~~e~ah~L~~~Q~l~l~~Le~r 161 (446)
..|++.+..++.+|+..+-.|..+.++ .+. .+-..|+-..+.. +++ .
T Consensus 180 ~lL~~~~~~vr~~A~~aL~~l~~~~~~-~~~----~~~~~~~l~~L~~-ll~-~-------------------------- 226 (530)
T 1wa5_B 180 QLLYTGSVEVKEQAIWALGNVAGDSTD-YRD----YVLQCNAMEPILG-LFN-S-------------------------- 226 (530)
T ss_dssp HHHHHCCHHHHHHHHHHHHHHHTTCHH-HHH----HHHHTTCHHHHHH-GGG-S--------------------------
T ss_pred HHHcCCCHHHHHHHHHHHHHHhCCCcc-chH----HHHHcCcHHHHHH-Hhc-c--------------------------
Confidence 999999999999999998888764221 122 2222344444444 332 1
Q ss_pred hcccCCCCCHHHHHHHHHHHHHhccccccCCCCCccccccCCCchhhhhhccccCCCcccccccCCchHhhHhHHHHHHH
Q psy1379 162 MNTKMDPQDQDAHDKIKELRRVAFEIDVIGGVDASSKRQMGGYAKDYKKLGFKYDINPAQDFTETPPGMLALDCMIYFAR 241 (446)
Q Consensus 162 ~~~~~d~~~~~h~~~L~~Lw~~a~p~~~~~~~~~~~~R~~~~~s~~Wk~LGFq~~~dP~~DFr~~~~G~LgL~nL~yFa~ 241 (446)
++..-.+.++..|+.++....+.. ...... +..+.--+-+. . .|| +.+ .-++..|.+++.
T Consensus 227 ------~~~~v~~~a~~~L~~L~~~~~~~~---~~~~~~-~~l~~L~~lL~--~-~d~--~v~-----~~a~~~L~~L~~ 286 (530)
T 1wa5_B 227 ------NKPSLIRTATWTLSNLCRGKKPQP---DWSVVS-QALPTLAKLIY--S-MDT--ETL-----VDACWAISYLSD 286 (530)
T ss_dssp ------CCHHHHHHHHHHHHHHHCCSSSCC---CHHHHG-GGHHHHHHHTT--C-CCH--HHH-----HHHHHHHHHHHS
T ss_pred ------CCHHHHHHHHHHHHHHhCCCCCCC---cHHHHH-hHHHHHHHHHc--C-CCH--HHH-----HHHHHHHHHHhC
Confidence 111122344444555443221000 000000 00111111111 1 221 222 234555556665
Q ss_pred hChHHHHHHHHhhhcchhhhhhhhhcCCCCccccchhhhccchHHHHHHHHHhhhhhhhcccccchhhhhhHHHHHHHHH
Q psy1379 242 NHPEAYTKQKATKKTLEGTAEKVRLSGLPDTDTLSSDVSGQVRLYFSIQFLLDCFAVLVNHSQAGLCVMLAHCLLSFVEL 321 (446)
Q Consensus 242 ~~~d~fskllleQ~~~~~~q~~~k~~aL~~l~~yS~aVtgin~t~fa~efl~dgl~~l~~~~e~g~~~~La~~L~aF~eL 321 (446)
..++....++.. ...+ ...+++ .++...+...++.++..+
T Consensus 287 ~~~~~~~~~~~~-~~v~----------------------------~Lv~lL-----------~~~~~~v~~~a~~~L~~l 326 (530)
T 1wa5_B 287 GPQEAIQAVIDV-RIPK----------------------------RLVELL-----------SHESTLVQTPALRAVGNI 326 (530)
T ss_dssp SCHHHHHHHHHT-TCHH----------------------------HHHHGG-----------GCSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhc-CcHH----------------------------HHHHHH-----------CCCChhhHHHHHHHHHHH
Confidence 555544333221 1110 111111 111111222222222222
Q ss_pred Hhhhcc-ccccchHHHHHHHHHhhcCCCCCCchHHHHHHHHHHhhhhhcCchhhhHHhhhcchhhhhhhcccCChHHHHh
Q psy1379 322 MDHGIV-SWNILETVFIKTVADHVNNPNPVPEKEIVQASLSILESIALNSVGKFSQVENHLTLTNLVMHLQNQSPIIQQN 400 (446)
Q Consensus 322 m~~~i~-swd~l~~~Fikki~~~vn~~~~~~d~~il~~~l~iLE~~vl~s~~~~~~v~~Ev~l~~l~~~lq~~~~~~~~~ 400 (446)
..++.. .-..+...++..++.++..+ +..+...++..|-++...++...+.+-..=-++.|+..|+..++.++..
T Consensus 327 ~~~~~~~~~~~~~~~~l~~L~~lL~~~----~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~ 402 (530)
T 1wa5_B 327 VTGNDLQTQVVINAGVLPALRLLLSSP----KENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKE 402 (530)
T ss_dssp TTSCHHHHHHHHHTTHHHHHHHHTTCS----CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHH
T ss_pred HcCCHHHHHHHHHcchHHHHHHHHcCC----CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHH
Confidence 211100 00011234566677777654 6788999999999998776644444444445778888888899999999
Q ss_pred HHHHHHHHhccCCc
Q psy1379 401 AIALINALFIKAEP 414 (446)
Q Consensus 401 a~al~nal~~~a~~ 414 (446)
|...|..|...+++
T Consensus 403 a~~aL~~l~~~~~~ 416 (530)
T 1wa5_B 403 ACWAISNASSGGLQ 416 (530)
T ss_dssp HHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhcCCC
Confidence 99888888877655
No 9
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=95.43 E-value=1.6 Score=44.61 Aligned_cols=95 Identities=12% Similarity=0.088 Sum_probs=66.9
Q ss_pred HHHHHHHHHhcCC-cc-cccCchHHHHHHHHhhcCCCCCCCchhhhHHHHHHHHHhhCCCCCccchhhhhcccchhHHhh
Q psy1379 5 CLLSFVELMDHGI-VS-WNILETVFIKTVADHVNNPNPVPEKEIVQASLSILESIALNSVGKFSQFSQVENHLTLTNLVM 82 (446)
Q Consensus 5 ~L~a~~~Lme~~~-~~-W~~l~~~fI~ki~~~v~~~~~~~~~~i~~~alsIL~~~V~~s~~~y~gf~~v~~~v~~~~lv~ 82 (446)
|+.++..++..+. -. -..+....|..++.++... .+..+...|+..|.++...++... ..+.+.=.++.|+.
T Consensus 94 A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~---~~~~v~~~A~~~L~~l~~~~~~~~---~~~~~~g~i~~L~~ 167 (528)
T 4b8j_A 94 ATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTRE---DFPQLQFEAAWALTNIASGTSENT---KVVIDHGAVPIFVK 167 (528)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCT---TCHHHHHHHHHHHHHHHTSCHHHH---HHHHHTTHHHHHHH
T ss_pred HHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCC---CCHHHHHHHHHHHHHHhCCCHHHH---HHHHhCCcHHHHHH
Confidence 5566666655431 01 1123445678888888874 348888899999999988665333 44444445788999
Q ss_pred hccCCChHHHHhHHHHHHHHhhc
Q psy1379 83 HLQNQSPIIQQNAIALINALFIK 105 (446)
Q Consensus 83 ~L~~~d~~iq~nalaLiNaL~~~ 105 (446)
.|.+.+..++.+|+..+-.|..+
T Consensus 168 lL~~~~~~v~~~a~~aL~~l~~~ 190 (528)
T 4b8j_A 168 LLGSSSDDVREQAVWALGNVAGD 190 (528)
T ss_dssp HTTCSCHHHHHHHHHHHHHHHHT
T ss_pred HhcCCCHHHHHHHHHHHHHHhCC
Confidence 99999999999999998888754
No 10
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=94.75 E-value=3.5 Score=40.51 Aligned_cols=313 Identities=11% Similarity=0.041 Sum_probs=162.8
Q ss_pred hHHHHHHHHHhc-CCccccc-Cch-HHHHHHHHhhcCCCCCCCchhhhHHHHHHHHHhhCCCCCccchhhhhcccchhHH
Q psy1379 4 HCLLSFVELMDH-GIVSWNI-LET-VFIKTVADHVNNPNPVPEKEIVQASLSILESIALNSVGKFSQFSQVENHLTLTNL 80 (446)
Q Consensus 4 y~L~a~~~Lme~-~~~~W~~-l~~-~fI~ki~~~v~~~~~~~~~~i~~~alsIL~~~V~~s~~~y~gf~~v~~~v~~~~l 80 (446)
.|+.++..++.. +...++. +.. .+|..++.++... .+..+...|..+|..+...++... ..+...=.++.|
T Consensus 39 ~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~---~~~~v~~~a~~~L~~l~~~~~~~~---~~~~~~~~i~~L 112 (450)
T 2jdq_A 39 SATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRK---ENCTLQFESAWVLTNIASGNSLQT---RIVIQAGAVPIF 112 (450)
T ss_dssp HHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCT---TCHHHHHHHHHHHHHHHSSCHHHH---HHHHHTTHHHHH
T ss_pred HHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCC---CCHHHHHHHHHHHHHHhcCCHHHH---HHHHhCCCHHHH
Confidence 466777777642 1112222 233 7888888888774 378899999999999987654322 233333357889
Q ss_pred hhhccCCChHHHHhHHHHHHHHhhccCChhhHHHHHHhhhhhhHHHHHHhhhcCCCCCCchhhhhcchHHHHHHHHHHHH
Q psy1379 81 VMHLQNQSPIIQQNAIALINALFIKAEPSKRKVISATMCSKQVRNAILTSVLQPSGGQVGAEMAHQLYVLQTLTLGLLEQ 160 (446)
Q Consensus 81 v~~L~~~d~~iq~nalaLiNaL~~~a~~~~~~~~~~~L~~~~~r~~v~~~ii~~~~~~~~~e~ah~L~~~Q~l~l~~Le~ 160 (446)
+..|++.|+.++..|+..+-.|..+.. ..+.. +-+.|+...+.. +++ .
T Consensus 113 ~~lL~~~~~~vr~~a~~~L~~l~~~~~-~~~~~----~~~~~~i~~L~~-~l~-~------------------------- 160 (450)
T 2jdq_A 113 IELLSSEFEDVQEQAVWALGNIAGDST-MCRDY----VLDCNILPPLLQ-LFS-K------------------------- 160 (450)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHHTTCH-HHHHH----HHHTTCHHHHHH-HTT-S-------------------------
T ss_pred HHHHcCCCHHHHHHHHHHHHHHccCCH-HHHHH----HHHCCCHHHHHH-Hhc-C-------------------------
Confidence 999999999999999988888776431 11221 112233333333 221 0
Q ss_pred HhcccCCCCCHHHHHHHHHHHHHhccccccCCCCCccccccCCCchhhhhhccccCCCcccccccCCchHhhHhHHHHHH
Q psy1379 161 RMNTKMDPQDQDAHDKIKELRRVAFEIDVIGGVDASSKRQMGGYAKDYKKLGFKYDINPAQDFTETPPGMLALDCMIYFA 240 (446)
Q Consensus 161 r~~~~~d~~~~~h~~~L~~Lw~~a~p~~~~~~~~~~~~R~~~~~s~~Wk~LGFq~~~dP~~DFr~~~~G~LgL~nL~yFa 240 (446)
|++..-.+.++.-|+.++....+.+ ....-. +..+.--+-+. . .|| +.+ .-+...|.+++
T Consensus 161 ------~~~~~v~~~a~~~L~~l~~~~~~~~---~~~~~~-~~l~~L~~~l~--~-~~~--~v~-----~~a~~~L~~l~ 220 (450)
T 2jdq_A 161 ------QNRLTMTRNAVWALSNLCRGKSPPP---EFAKVS-PCLNVLSWLLF--V-SDT--DVL-----ADACWALSYLS 220 (450)
T ss_dssp ------CCCHHHHHHHHHHHHHHHCCSSSCC---CGGGTG-GGHHHHHHHTT--C-CCH--HHH-----HHHHHHHHHHT
T ss_pred ------CCCHHHHHHHHHHHHHHhCCCCCCC---CHHHHH-HHHHHHHHHHc--c-CCH--HHH-----HHHHHHHHHHH
Confidence 1222334555666666664321000 000000 00000000110 1 111 111 11233333333
Q ss_pred HhChHHHHHHHHhhhcchhhhhhhhhcCCCCccccchhhhccchHHHHHHHHHhhhhhhhcccccchhhhhhHHHHHHHH
Q psy1379 241 RNHPEAYTKQKATKKTLEGTAEKVRLSGLPDTDTLSSDVSGQVRLYFSIQFLLDCFAVLVNHSQAGLCVMLAHCLLSFVE 320 (446)
Q Consensus 241 ~~~~d~fskllleQ~~~~~~q~~~k~~aL~~l~~yS~aVtgin~t~fa~efl~dgl~~l~~~~e~g~~~~La~~L~aF~e 320 (446)
...++....+.. ..+...+.....++..++...++.++..
T Consensus 221 ~~~~~~~~~~~~----------------------------------------~~~i~~L~~ll~~~~~~v~~~a~~~L~~ 260 (450)
T 2jdq_A 221 DGPNDKIQAVID----------------------------------------AGVCRRLVELLMHNDYKVVSPALRAVGN 260 (450)
T ss_dssp SSSHHHHHHHHH----------------------------------------TTTHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHH----------------------------------------cCcHHHHHHHHCCCchhHHHHHHHHHHH
Confidence 333322111110 0011111111112222334444455555
Q ss_pred HHhhhcccc-ccchHHHHHHHHHhhcCCCCCCchHHHHHHHHHHhhhhhcCchhhhHHhhhcchhhhhhhcccCChHHHH
Q psy1379 321 LMDHGIVSW-NILETVFIKTVADHVNNPNPVPEKEIVQASLSILESIALNSVGKFSQVENHLTLTNLVMHLQNQSPIIQQ 399 (446)
Q Consensus 321 Lm~~~i~sw-d~l~~~Fikki~~~vn~~~~~~d~~il~~~l~iLE~~vl~s~~~~~~v~~Ev~l~~l~~~lq~~~~~~~~ 399 (446)
+..+..... ..+....+..++.+++.+ +..+...++..|-++...++...+.+-+.=-++.|+..|+..++.++.
T Consensus 261 l~~~~~~~~~~~~~~~~l~~L~~ll~~~----~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~ 336 (450)
T 2jdq_A 261 IVTGDDIQTQVILNCSALQSLLHLLSSP----KESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRK 336 (450)
T ss_dssp HTTSCHHHHHHHHTTTHHHHHHHHTTCS----SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHH
T ss_pred HhhCChHHHHHHHHCccHHHHHHHHcCC----CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHH
Confidence 443221100 112234667777888654 578999999999999886654444444444477888888889999999
Q ss_pred hHHHHHHHHhccCCchhHH
Q psy1379 400 NAIALINALFIKAEPSKRK 418 (446)
Q Consensus 400 ~a~al~nal~~~a~~~~r~ 418 (446)
.|...+-.|..++++...+
T Consensus 337 ~a~~~L~~l~~~~~~~~~~ 355 (450)
T 2jdq_A 337 EAAWAITNATSGGSAEQIK 355 (450)
T ss_dssp HHHHHHHHHHHHCCHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHH
Confidence 9998888887776555444
No 11
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=93.67 E-value=1.9 Score=39.08 Aligned_cols=71 Identities=20% Similarity=0.216 Sum_probs=57.3
Q ss_pred HHHHHHHHhhcCCCCCCchHHHHHHHHHHhhhhhcCchhhhHHhhhcchhhhhhhcccCChHHHHhHHHHHHHHh
Q psy1379 335 VFIKTVADHVNNPNPVPEKEIVQASLSILESIALNSVGKFSQVENHLTLTNLVMHLQNQSPIIQQNAIALINALF 409 (446)
Q Consensus 335 ~Fikki~~~vn~~~~~~d~~il~~~l~iLE~~vl~s~~~~~~v~~Ev~l~~l~~~lq~~~~~~~~~a~al~nal~ 409 (446)
..+..++..++.+ |..+...++..|.+++..++.....+.+.=-++.|+..++..++.++.+|...|-.|.
T Consensus 180 ~~i~~L~~ll~~~----~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~ 250 (252)
T 4db8_A 180 GALPALVQLLSSP----NEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 250 (252)
T ss_dssp TCHHHHHHGGGCS----SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC
T ss_pred CCHHHHHHHHCCC----CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHh
Confidence 4566777888654 7789999999999999888776777766666888999999999999999987776543
No 12
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=93.59 E-value=3.8 Score=45.65 Aligned_cols=116 Identities=11% Similarity=0.084 Sum_probs=75.1
Q ss_pred HHHHHHHhcCCcccccC-chHHHHHHHHhhcCCCCCCCchhhhHHHHHHHHHhhCCCCC-----------ccch------
Q psy1379 7 LSFVELMDHGIVSWNIL-ETVFIKTVADHVNNPNPVPEKEIVQASLSILESIALNSVGK-----------FSQF------ 68 (446)
Q Consensus 7 ~a~~~Lme~~~~~W~~l-~~~fI~ki~~~v~~~~~~~~~~i~~~alsIL~~~V~~s~~~-----------y~gf------ 68 (446)
-++..|-..+.+-|+.. +..+|.+.++++.+ .+..+..+|+.+|.+++..+... |++=
T Consensus 401 eaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s----~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~ 476 (810)
T 3now_A 401 DGLAYLTLDAECKEKLIEDKASIHALMDLARG----GNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEH 476 (810)
T ss_dssp HHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHT----TCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSS
T ss_pred HHHHHHhCCcHHHHHHHHccchHHHHHHHhCC----CChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCcccc
Confidence 33333333323345554 57899999999986 47899999999999998855211 1110
Q ss_pred -----hhhh---ccc----chhHHhhhccCCChHHHHhHHHHHHHHhhccCChhhHHHHHHhhhhhhHHHHHHhhhc
Q psy1379 69 -----SQVE---NHL----TLTNLVMHLQNQSPIIQQNAIALINALFIKAEPSKRKVISATMCSKQVRNAILTSVLQ 133 (446)
Q Consensus 69 -----~~v~---~~v----~~~~lv~~L~~~d~~iq~nalaLiNaL~~~a~~~~~~~~~~~L~~~~~r~~v~~~ii~ 133 (446)
..+. +.| .++.||..|.+.++.+|.+|...|-.|-. +. +....+-+.|....++. +++
T Consensus 477 ~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~---d~---~~r~~Vv~~Gaip~Lv~-LL~ 546 (810)
T 3now_A 477 ELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCG---LK---ELRGKVVQEGGVKALLR-MAL 546 (810)
T ss_dssp CHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHT---SH---HHHHHHHHTTHHHHHHH-HHH
T ss_pred ccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcC---CH---HHHHHHHHCCCHHHHHH-HHc
Confidence 0111 111 36889999999999999999988888843 21 23444555677777766 554
No 13
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=93.39 E-value=9.2 Score=40.36 Aligned_cols=311 Identities=14% Similarity=0.135 Sum_probs=161.2
Q ss_pred CchHHHHHHHHhhcCCCCCCCchhhhHHHHHHHHHhhCCCCCccchhhhhcccchhHHhhhccCC-ChHHHHhHHHHHHH
Q psy1379 23 LETVFIKTVADHVNNPNPVPEKEIVQASLSILESIALNSVGKFSQFSQVENHLTLTNLVMHLQNQ-SPIIQQNAIALINA 101 (446)
Q Consensus 23 l~~~fI~ki~~~v~~~~~~~~~~i~~~alsIL~~~V~~s~~~y~gf~~v~~~v~~~~lv~~L~~~-d~~iq~nalaLiNa 101 (446)
+....|..++.++.. ++..|.+.|+..|..+........ ..+..+-.++.|++.|.+. |.+++.+|...+-.
T Consensus 11 ~~~g~i~~Lv~lL~~----~~~~vr~~A~~~L~~La~~~~~~~---~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~ 83 (644)
T 2z6h_A 11 LATRAIPELTKLLND----EDQVVVNKAAVMVHQLSKKEASRH---AIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHN 83 (644)
T ss_dssp -CTTTHHHHHHHHTC----SCHHHHHHHHHHHHHHHTSTTHHH---HHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred hhhchHHHHHHHHcC----CCHHHHHHHHHHHHHHHCCChhHH---HHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 456678888899885 478999999999999987765332 3333333478899999874 89999999988776
Q ss_pred HhhccCChhhHHHHHHhhhhhhHHHHHHhhhcCCCCCCchhhhhcchHHHHHHHHHHHHHhcccCCCCCHHHHHH-----
Q psy1379 102 LFIKAEPSKRKVISATMCSKQVRNAILTSVLQPSGGQVGAEMAHQLYVLQTLTLGLLEQRMNTKMDPQDQDAHDK----- 176 (446)
Q Consensus 102 L~~~a~~~~~~~~~~~L~~~~~r~~v~~~ii~~~~~~~~~e~ah~L~~~Q~l~l~~Le~r~~~~~d~~~~~h~~~----- 176 (446)
|-.. ++. ...+.+.|....+.. +++ +. + -..|......|.+-... .++ +++.
T Consensus 84 Ls~~--~~~----~~~i~~~g~i~~Lv~-lL~-~~---~-------~~v~~~A~~aL~nL~~~---~~~--~~~~v~~~g 140 (644)
T 2z6h_A 84 LSHH--REG----LLAIFKSGGIPALVK-MLG-SP---V-------DSVLFYAITTLHNLLLH---QEG--AKMAVRLAG 140 (644)
T ss_dssp HTTS--HHH----HHHHHTTTHHHHHHH-HTT-CS---S-------HHHHHHHHHHHHHHHHH---STT--HHHHHHHTT
T ss_pred HhcC--hhh----HHHHHHcCCHHHHHH-HHh-CC---C-------HHHHHHHHHHHHHHHhC---cch--hHHHHHHCC
Confidence 6543 122 233334466666665 443 21 1 12333333333332221 111 1111
Q ss_pred -HHHHHHHhccccccCCCCCccccccCCCchhhhhhccccCCCcccccccCCchHhhHhHHHHHHHhChHHHHHHHHhhh
Q psy1379 177 -IKELRRVAFEIDVIGGVDASSKRQMGGYAKDYKKLGFKYDINPAQDFTETPPGMLALDCMIYFARNHPEAYTKQKATKK 255 (446)
Q Consensus 177 -L~~Lw~~a~p~~~~~~~~~~~~R~~~~~s~~Wk~LGFq~~~dP~~DFr~~~~G~LgL~nL~yFa~~~~d~fskllleQ~ 255 (446)
+..|-.+.. . .+| +++ . .++.+|.-.+..+++. +..+.+..
T Consensus 141 ~i~~Lv~lL~-----------------------------~-~~~--~~~--~---~a~~~L~~La~~~~~~-~~~i~~~g 182 (644)
T 2z6h_A 141 GLQKMVALLN-----------------------------K-TNV--KFL--A---ITTDCLQILAYGNQES-KLIILASG 182 (644)
T ss_dssp HHHHHHHGGG-----------------------------C-CCH--HHH--H---HHHHHHHHHHTTCHHH-HHHHHHTT
T ss_pred ChHHHHHHHC-----------------------------c-CCH--HHH--H---HHHHHHHHHHhcCcHH-HHHHHHcC
Confidence 111222111 1 112 222 1 1122232233222222 11111111
Q ss_pred cchhhh--------hhhhhcCCCCccccchhhhccchHHHHHHHH-HhhhhhhhcccccchhhhhhHHHHHHHHHHhhhc
Q psy1379 256 TLEGTA--------EKVRLSGLPDTDTLSSDVSGQVRLYFSIQFL-LDCFAVLVNHSQAGLCVMLAHCLLSFVELMDHGI 326 (446)
Q Consensus 256 ~~~~~q--------~~~k~~aL~~l~~yS~aVtgin~t~fa~efl-~dgl~~l~~~~e~g~~~~La~~L~aF~eLm~~~i 326 (446)
+.+..- +..+..++..++..+.... ....++ ..++..+.....++...+...++..+..|-.+.
T Consensus 183 ~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~------~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~- 255 (644)
T 2z6h_A 183 GPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSS------NKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAA- 255 (644)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTT------HHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGC-
T ss_pred ChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcc------cHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcc-
Confidence 110000 0000000000011111111 112222 223333444444444445556666666664432
Q ss_pred cccccchHHHHHHHHHhhcCCCCCCchHHHHHHHHHHhhhhhcCchhhhHHhhhcchhhhhhhcccCC--hHHHHhHHHH
Q psy1379 327 VSWNILETVFIKTVADHVNNPNPVPEKEIVQASLSILESIALNSVGKFSQVENHLTLTNLVMHLQNQS--PIIQQNAIAL 404 (446)
Q Consensus 327 ~swd~l~~~Fikki~~~vn~~~~~~d~~il~~~l~iLE~~vl~s~~~~~~v~~Ev~l~~l~~~lq~~~--~~~~~~a~al 404 (446)
-.++.. ...+..++..++.. |..+...+...|-++..+++..++.+.+.=-++.|+..|...+ +.++..|+..
T Consensus 256 ~~~~~~-~~~i~~Lv~lL~~~----d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~a 330 (644)
T 2z6h_A 256 TKQEGM-EGLLGTLVQLLGSD----DINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICA 330 (644)
T ss_dssp TTCCSC-HHHHHHHHHHTTCS----CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhhhhh-hhHHHHHHHHHcCC----CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHH
Confidence 334433 46788888888653 6789999999999998887766777766656888888888632 6888888887
Q ss_pred HHHHhccCC
Q psy1379 405 INALFIKAE 413 (446)
Q Consensus 405 ~nal~~~a~ 413 (446)
+-.|..+.+
T Consensus 331 L~nL~~~~~ 339 (644)
T 2z6h_A 331 LRHLTSRHQ 339 (644)
T ss_dssp HHHHTSSST
T ss_pred HHHHhcCCc
Confidence 777765434
No 14
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=92.84 E-value=0.69 Score=41.61 Aligned_cols=118 Identities=13% Similarity=0.090 Sum_probs=78.8
Q ss_pred hhhhhcccccchhhhhhHHHHHHHHHHhhhc-cccccchHHHHHHHHHhhcCCCCCCchHHHHHHHHHHhhhhhcCchhh
Q psy1379 296 FAVLVNHSQAGLCVMLAHCLLSFVELMDHGI-VSWNILETVFIKTVADHVNNPNPVPEKEIVQASLSILESIALNSVGKF 374 (446)
Q Consensus 296 l~~l~~~~e~g~~~~La~~L~aF~eLm~~~i-~swd~l~~~Fikki~~~vn~~~~~~d~~il~~~l~iLE~~vl~s~~~~ 374 (446)
+..+.....++..++...+..+...|-.+.. ..-..+....+..++.+++.+ |..+...++..|-++...++...
T Consensus 88 i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~----~~~~~~~a~~~L~~l~~~~~~~~ 163 (252)
T 4hxt_A 88 VEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTST----DSEVQKEAARALANIASGPDEAI 163 (252)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS----CHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC----CHHHHHHHHHHHHHHHcCCHHHH
Confidence 3333333334333455555555555543221 111123335677888888654 67899999999999998877665
Q ss_pred hHHhhhcchhhhhhhcccCChHHHHhHHHHHHHHhccCCchhHH
Q psy1379 375 SQVENHLTLTNLVMHLQNQSPIIQQNAIALINALFIKAEPSKRK 418 (446)
Q Consensus 375 ~~v~~Ev~l~~l~~~lq~~~~~~~~~a~al~nal~~~a~~~~r~ 418 (446)
+.+.+.=-++.|+..++..++.++..|+..+-.|..+ ++..++
T Consensus 164 ~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~ 206 (252)
T 4hxt_A 164 KAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASG-PTSAIK 206 (252)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS-BHHHHH
T ss_pred HHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcC-CHHHHH
Confidence 6666666789999999999999999999999888863 344443
No 15
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=92.40 E-value=7.2 Score=39.87 Aligned_cols=73 Identities=10% Similarity=-0.003 Sum_probs=54.0
Q ss_pred HHHHHHHHhhcCCCCCCCchhhhHHHHHHHHHhhCCCCCccchhhhhcccchhHHhhhccCCChHHHHhHHHHHHHHhhc
Q psy1379 26 VFIKTVADHVNNPNPVPEKEIVQASLSILESIALNSVGKFSQFSQVENHLTLTNLVMHLQNQSPIIQQNAIALINALFIK 105 (446)
Q Consensus 26 ~fI~ki~~~v~~~~~~~~~~i~~~alsIL~~~V~~s~~~y~gf~~v~~~v~~~~lv~~L~~~d~~iq~nalaLiNaL~~~ 105 (446)
..|..++.++.. .+..+.+.|+..|..++.+..... ..+...-.++.|+..|.+.|..++.+|+..+-.|-..
T Consensus 215 ~~l~~L~~ll~~----~~~~v~~~a~~~L~~L~~~~~~~~---~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~ 287 (530)
T 1wa5_B 215 NAMEPILGLFNS----NKPSLIRTATWTLSNLCRGKKPQP---DWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDG 287 (530)
T ss_dssp TCHHHHHHGGGS----CCHHHHHHHHHHHHHHHCCSSSCC---CHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSS
T ss_pred CcHHHHHHHhcc----CCHHHHHHHHHHHHHHhCCCCCCC---cHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCC
Confidence 456677777775 468899999999999987762222 2222233467889999999999999999988888754
No 16
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=91.04 E-value=15 Score=37.33 Aligned_cols=96 Identities=15% Similarity=0.098 Sum_probs=72.3
Q ss_pred hhHHHHHHHHHhcCCccc-ccCchHHHHHHHHhhcCCCCCCCchhhhHHHHHHHHHhhCCCCCccchhhhhcccchhHHh
Q psy1379 3 AHCLLSFVELMDHGIVSW-NILETVFIKTVADHVNNPNPVPEKEIVQASLSILESIALNSVGKFSQFSQVENHLTLTNLV 81 (446)
Q Consensus 3 ay~L~a~~~Lme~~~~~W-~~l~~~fI~ki~~~v~~~~~~~~~~i~~~alsIL~~~V~~s~~~y~gf~~v~~~v~~~~lv 81 (446)
..|..++..|..++.-.+ .......|..++.++.+ .+..+.+.|...|.++...++..- ..|.+.=.++.||
T Consensus 20 ~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s----~~~~~~~~A~~aL~nLa~~~~~~k---~~i~~~G~i~~Lv 92 (457)
T 1xm9_A 20 AIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRS----PNQNVQQAAAGALRNLVFRSTTNK---LETRRQNGIREAV 92 (457)
T ss_dssp HHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTS----SCHHHHHHHHHHHHHHHSSCHHHH---HHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcC----CCHHHHHHHHHHHHHHhcCCHHHH---HHHHHcCCHHHHH
Confidence 356777777776543345 45567788999999986 368899999999999987643322 4444555689999
Q ss_pred hhcc-CCChHHHHhHHHHHHHHhhc
Q psy1379 82 MHLQ-NQSPIIQQNAIALINALFIK 105 (446)
Q Consensus 82 ~~L~-~~d~~iq~nalaLiNaL~~~ 105 (446)
+.|. +.+..++.+|...+=.|-..
T Consensus 93 ~lL~~~~~~~~~~~a~~aL~nLa~~ 117 (457)
T 1xm9_A 93 SLLRRTGNAEIQKQLTGLLWNLSST 117 (457)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHHHTS
T ss_pred HHHhhCCCHHHHHHHHHHHHHHhcC
Confidence 9999 88999999998888777766
No 17
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=90.50 E-value=16 Score=37.01 Aligned_cols=75 Identities=12% Similarity=0.069 Sum_probs=57.9
Q ss_pred HHHHHHHHhhcCCCCCCCchhhhHHHHHHHHHhhCCCCCccchhhhhcccchhHHhhhc-cCCChHHHHhHHHHHHHHhh
Q psy1379 26 VFIKTVADHVNNPNPVPEKEIVQASLSILESIALNSVGKFSQFSQVENHLTLTNLVMHL-QNQSPIIQQNAIALINALFI 104 (446)
Q Consensus 26 ~fI~ki~~~v~~~~~~~~~~i~~~alsIL~~~V~~s~~~y~gf~~v~~~v~~~~lv~~L-~~~d~~iq~nalaLiNaL~~ 104 (446)
..|..++.++.. ++..|...|+..|.++...++... ..+...=.++.|+..| ...+..++.++...+-.|..
T Consensus 160 g~i~~L~~lL~~----~~~~v~~~a~~aL~~l~~~~~~~~---~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~ 232 (528)
T 4b8j_A 160 GAVPIFVKLLGS----SSDDVREQAVWALGNVAGDSPKCR---DLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCR 232 (528)
T ss_dssp THHHHHHHHTTC----SCHHHHHHHHHHHHHHHHTCHHHH---HHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHC
T ss_pred CcHHHHHHHhcC----CCHHHHHHHHHHHHHHhCCChhhH---HHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHc
Confidence 466777777776 368999999999999987765432 4444444578899999 67899999999999999988
Q ss_pred ccC
Q psy1379 105 KAE 107 (446)
Q Consensus 105 ~a~ 107 (446)
..+
T Consensus 233 ~~~ 235 (528)
T 4b8j_A 233 GKP 235 (528)
T ss_dssp SSS
T ss_pred CCC
Confidence 753
No 18
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=90.06 E-value=1.3 Score=43.23 Aligned_cols=96 Identities=8% Similarity=0.059 Sum_probs=69.2
Q ss_pred hHHHHHHHHHhcC-CcccccCchHHHHHHHHhhcCCCCCCCchhhhHHHHHHHHHhhCCCCCccchhhhhcccchhHHhh
Q psy1379 4 HCLLSFVELMDHG-IVSWNILETVFIKTVADHVNNPNPVPEKEIVQASLSILESIALNSVGKFSQFSQVENHLTLTNLVM 82 (446)
Q Consensus 4 y~L~a~~~Lme~~-~~~W~~l~~~fI~ki~~~v~~~~~~~~~~i~~~alsIL~~~V~~s~~~y~gf~~v~~~v~~~~lv~ 82 (446)
+|..++-.+...+ ...+..+....|...+.++.+. ++.++.+.|+--|.+++-+.+.. .+.+...=-++.|+.
T Consensus 101 ~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~---~~~~v~~~A~~ALsnl~~~~~~~---~~~~~~~ggi~~L~~ 174 (296)
T 1xqr_A 101 RAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRD---ACDTVRVKALFAISCLVREQEAG---LLQFLRLDGFSVLMR 174 (296)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHC---SCHHHHHHHHHHHHHHHTTCHHH---HHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccC---CCHHHHHHHHHHHHHHHcCCcHH---HHHHHHCCCHHHHHH
Confidence 4555555555432 1233444556777888888764 46788899999999998776533 255554445889999
Q ss_pred hccCCChHHHHhHHHHHHHHhhc
Q psy1379 83 HLQNQSPIIQQNAIALINALFIK 105 (446)
Q Consensus 83 ~L~~~d~~iq~nalaLiNaL~~~ 105 (446)
.|++.|..++..|..+|-.|...
T Consensus 175 lL~~~d~~v~~~A~~aLs~L~~~ 197 (296)
T 1xqr_A 175 AMQQQVQKLKVKSAFLLQNLLVG 197 (296)
T ss_dssp HHHSSCHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999876
No 19
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=88.97 E-value=2 Score=37.81 Aligned_cols=109 Identities=17% Similarity=0.202 Sum_probs=74.1
Q ss_pred hhhhcccccchhhhhhHHHHHHHHHHhhhccc-cccchHHHHHHHHHhhcCCCCCCchHHHHHHHHHHhhhhhcCchhhh
Q psy1379 297 AVLVNHSQAGLCVMLAHCLLSFVELMDHGIVS-WNILETVFIKTVADHVNNPNPVPEKEIVQASLSILESIALNSVGKFS 375 (446)
Q Consensus 297 ~~l~~~~e~g~~~~La~~L~aF~eLm~~~i~s-wd~l~~~Fikki~~~vn~~~~~~d~~il~~~l~iLE~~vl~s~~~~~ 375 (446)
..+.....++...+...+..+...+..++.-. -..+....+..++.+++.+ |..+...++..|-++...++....
T Consensus 99 ~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~----~~~v~~~a~~aL~~l~~~~~~~~~ 174 (210)
T 4db6_A 99 PALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP----NEQILQEALWALSNIASGGNEQKQ 174 (210)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS----CHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCC----CHHHHHHHHHHHHHHHcCCcHHHH
Confidence 33444444443344445555555554322111 1123445778888888664 678999999999999998877777
Q ss_pred HHhhhcchhhhhhhcccCChHHHHhHHHHHHHHh
Q psy1379 376 QVENHLTLTNLVMHLQNQSPIIQQNAIALINALF 409 (446)
Q Consensus 376 ~v~~Ev~l~~l~~~lq~~~~~~~~~a~al~nal~ 409 (446)
.+.+.=-++.|+..++..++.++.+|...+..|-
T Consensus 175 ~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 175 AVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp HHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred HHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 7766666888999999999999999998887664
No 20
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=87.92 E-value=5.4 Score=35.99 Aligned_cols=82 Identities=18% Similarity=0.234 Sum_probs=63.6
Q ss_pred HHHHHHHHhhcCCCCCCchHHHHHHHHHHhhhhhcCchhhhHHhhhcchhhhhhhcccCChHHHHhHHHHHHHHhccCCc
Q psy1379 335 VFIKTVADHVNNPNPVPEKEIVQASLSILESIALNSVGKFSQVENHLTLTNLVMHLQNQSPIIQQNAIALINALFIKAEP 414 (446)
Q Consensus 335 ~Fikki~~~vn~~~~~~d~~il~~~l~iLE~~vl~s~~~~~~v~~Ev~l~~l~~~lq~~~~~~~~~a~al~nal~~~a~~ 414 (446)
..+..++.++... |..+...++..|.++...++...+.+.+.=-++.|+..|...++.++.+|+..+-.|... ++
T Consensus 138 ~~i~~L~~lL~~~----~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~ 212 (252)
T 4db8_A 138 GALPALVQLLSSP----NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG-GN 212 (252)
T ss_dssp THHHHHHHGGGCS----CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTS-CH
T ss_pred CCHHHHHHHHhCC----CHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcC-CH
Confidence 3567778888654 678999999999999988876666666666688999999999999999999998888743 44
Q ss_pred hhHHHhh
Q psy1379 415 SKRKVIS 421 (446)
Q Consensus 415 ~~r~~~~ 421 (446)
..++.+.
T Consensus 213 ~~~~~~~ 219 (252)
T 4db8_A 213 EQKQAVK 219 (252)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
No 21
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=87.91 E-value=13 Score=38.16 Aligned_cols=107 Identities=13% Similarity=0.145 Sum_probs=61.3
Q ss_pred cccccchhhhhhHHHHHHHHHHhhhcccc--ccchHHHHHHHHHhhcCCCCCCchHHHHHHHHHHhhhhh-----cCchh
Q psy1379 301 NHSQAGLCVMLAHCLLSFVELMDHGIVSW--NILETVFIKTVADHVNNPNPVPEKEIVQASLSILESIAL-----NSVGK 373 (446)
Q Consensus 301 ~~~e~g~~~~La~~L~aF~eLm~~~i~sw--d~l~~~Fikki~~~vn~~~~~~d~~il~~~l~iLE~~vl-----~s~~~ 373 (446)
....++..++-..+..+...+..++.... -.+....++.++..++. .|.+++..+|..|+++.. .....
T Consensus 384 ~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~----~d~~i~~~~L~aL~nil~~~~~~~~~~~ 459 (529)
T 3tpo_A 384 GVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSA----KDTKIIQVILDAISNIFQAAEKLGETEK 459 (529)
T ss_dssp HHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGC----SCHHHHHHHHHHHHHHHHHHHTTTCHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcC----CCHHHHHHHHHHHHHHHHHhHhccChHH
Confidence 33334443344444445555554432211 11233445666777755 388999999999998863 23333
Q ss_pred hhHHhhhcchhhhhhhccc-CChHHHHhHHHHHHHHhcc
Q psy1379 374 FSQVENHLTLTNLVMHLQN-QSPIIQQNAIALINALFIK 411 (446)
Q Consensus 374 ~~~v~~Ev~l~~l~~~lq~-~~~~~~~~a~al~nal~~~ 411 (446)
+...-.|..--+.+..||. .|+.|...|..+|.--|.-
T Consensus 460 ~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~ 498 (529)
T 3tpo_A 460 LSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSV 498 (529)
T ss_dssp HHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCC
Confidence 4444444432233344444 8999999999999998854
No 22
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=87.65 E-value=4 Score=36.42 Aligned_cols=99 Identities=10% Similarity=0.096 Sum_probs=69.6
Q ss_pred hhhhHHHHHHHHHHhh-hccccccchHHHHHHHHHhhcCCCCCCchHHHHHHHHHHhhhhhcCchhhhHHhhhcchhhhh
Q psy1379 309 VMLAHCLLSFVELMDH-GIVSWNILETVFIKTVADHVNNPNPVPEKEIVQASLSILESIALNSVGKFSQVENHLTLTNLV 387 (446)
Q Consensus 309 ~~La~~L~aF~eLm~~-~i~swd~l~~~Fikki~~~vn~~~~~~d~~il~~~l~iLE~~vl~s~~~~~~v~~Ev~l~~l~ 387 (446)
.+...+..++..+-.+ ....-..+....+..++..++.+ |..+...++..|.++...++.....+.++=.++.|+
T Consensus 59 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~----~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~ 134 (252)
T 4hxt_A 59 EVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTST----DSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLV 134 (252)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS----SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcCC----CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHH
Confidence 3444444444444433 11111122334566777888653 678999999999999977776677777766789999
Q ss_pred hhcccCChHHHHhHHHHHHHHhcc
Q psy1379 388 MHLQNQSPIIQQNAIALINALFIK 411 (446)
Q Consensus 388 ~~lq~~~~~~~~~a~al~nal~~~ 411 (446)
..+...++.++.+|+..+-.|...
T Consensus 135 ~~l~~~~~~~~~~a~~~L~~l~~~ 158 (252)
T 4hxt_A 135 KLLTSTDSEVQKEAARALANIASG 158 (252)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCHHHHHHHHHHHHHHHcC
Confidence 999999999999999988888754
No 23
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=86.99 E-value=3.9 Score=35.92 Aligned_cols=75 Identities=20% Similarity=0.229 Sum_probs=60.3
Q ss_pred HHHHHHHHhhcCCCCCCchHHHHHHHHHHhhhhhcCchhhhHHhhhcchhhhhhhcccCChHHHHhHHHHHHHHhccCC
Q psy1379 335 VFIKTVADHVNNPNPVPEKEIVQASLSILESIALNSVGKFSQVENHLTLTNLVMHLQNQSPIIQQNAIALINALFIKAE 413 (446)
Q Consensus 335 ~Fikki~~~vn~~~~~~d~~il~~~l~iLE~~vl~s~~~~~~v~~Ev~l~~l~~~lq~~~~~~~~~a~al~nal~~~a~ 413 (446)
..+..++.+++.+ |..+...++..|.++...++.....+.+.=-++.|+..++..++.++.+|+..+..|....+
T Consensus 96 g~i~~L~~lL~~~----~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~ 170 (210)
T 4db6_A 96 GALPALVQLLSSP----NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 170 (210)
T ss_dssp TCHHHHHHHTTCS----CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCH
T ss_pred CCHHHHHHHHcCC----cHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCc
Confidence 3456677888664 67899999999999998877666666655568999999999999999999999988886543
No 24
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=86.98 E-value=26 Score=34.95 Aligned_cols=68 Identities=15% Similarity=0.154 Sum_probs=50.8
Q ss_pred HHHHHHHhhcCCCCCCchHHHHHHHHHHhhhhhcCchhhhHHhhhcchhhhhhhcccCChHHHHhHHHHHHHH
Q psy1379 336 FIKTVADHVNNPNPVPEKEIVQASLSILESIALNSVGKFSQVENHLTLTNLVMHLQNQSPIIQQNAIALINAL 408 (446)
Q Consensus 336 Fikki~~~vn~~~~~~d~~il~~~l~iLE~~vl~s~~~~~~v~~Ev~l~~l~~~lq~~~~~~~~~a~al~nal 408 (446)
.+..++.++... +..+...+...|.++... +.....+.+.=.++.|...+...|+.++.+|...+..|
T Consensus 461 ~v~~l~~ll~~~----~~~v~~~a~~~l~~l~~~-~~~~~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 461 TIPLFVQLLYSP----IENIQRVAAGVLCELAQD-KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528 (529)
T ss_dssp CHHHHHHGGGCS----CHHHHHHHHHHHHHHTTS-HHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred CccHHHHHHcCC----chHHHHHHHHHHHHHhcC-HHHHHHHHHcCChHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 345667777654 568999999999988754 33466666666688888888889999999998776543
No 25
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=85.39 E-value=28 Score=33.81 Aligned_cols=75 Identities=13% Similarity=0.080 Sum_probs=56.2
Q ss_pred hHHHHHHHHhhcCCCCCCCchhhhHHHHHHHHHhhCCCCCccchhhhhcccchhHHhhhccC-CChHHHHhHHHHHHHHh
Q psy1379 25 TVFIKTVADHVNNPNPVPEKEIVQASLSILESIALNSVGKFSQFSQVENHLTLTNLVMHLQN-QSPIIQQNAIALINALF 103 (446)
Q Consensus 25 ~~fI~ki~~~v~~~~~~~~~~i~~~alsIL~~~V~~s~~~y~gf~~v~~~v~~~~lv~~L~~-~d~~iq~nalaLiNaL~ 103 (446)
...|..++.++.. ++..+...|+..|.++...++... ..+...-.++.|+..|++ .+..++.+|+..+-.|.
T Consensus 106 ~~~i~~L~~lL~~----~~~~vr~~a~~~L~~l~~~~~~~~---~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~ 178 (450)
T 2jdq_A 106 AGAVPIFIELLSS----EFEDVQEQAVWALGNIAGDSTMCR---DYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLC 178 (450)
T ss_dssp TTHHHHHHHHTTC----SCHHHHHHHHHHHHHHHTTCHHHH---HHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHcC----CCHHHHHHHHHHHHHHccCCHHHH---HHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Confidence 4567777777776 478899999999999987764322 333333357888999985 78999999999888888
Q ss_pred hcc
Q psy1379 104 IKA 106 (446)
Q Consensus 104 ~~a 106 (446)
...
T Consensus 179 ~~~ 181 (450)
T 2jdq_A 179 RGK 181 (450)
T ss_dssp CCS
T ss_pred CCC
Confidence 765
No 26
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=84.18 E-value=57 Score=36.25 Aligned_cols=97 Identities=12% Similarity=0.113 Sum_probs=65.5
Q ss_pred hHHHHHHHHHhcC--CcccccCc----hHHHHHHHHhhcCCCCCCCchhhhHHHHHHHHHhhCCCCCccchhhhhcccch
Q psy1379 4 HCLLSFVELMDHG--IVSWNILE----TVFIKTVADHVNNPNPVPEKEIVQASLSILESIALNSVGKFSQFSQVENHLTL 77 (446)
Q Consensus 4 y~L~a~~~Lme~~--~~~W~~l~----~~fI~ki~~~v~~~~~~~~~~i~~~alsIL~~~V~~s~~~y~gf~~v~~~v~~ 77 (446)
+|+.++..+-..+ .-+-..+. ...+..++.++.+. ..+..+.+.|..-|..+...+...- +++...=.+
T Consensus 349 ~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~--~~d~~v~~~AveaLayLS~~~~vk~---~lv~d~g~I 423 (810)
T 3now_A 349 RALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKP--GKDKDIRRWAADGLAYLTLDAECKE---KLIEDKASI 423 (810)
T ss_dssp HHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCS--SCCSSHHHHHHHHHHHHTTSHHHHH---HHHHCHHHH
T ss_pred HHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHHHhCCcHHHH---HHHHccchH
Confidence 4566666665321 11223443 35567777888774 2377888888888887765554332 344444458
Q ss_pred hHHhhhccCCChHHHHhHHHHHHHHhhc
Q psy1379 78 TNLVMHLQNQSPIIQQNAIALINALFIK 105 (446)
Q Consensus 78 ~~lv~~L~~~d~~iq~nalaLiNaL~~~ 105 (446)
+.||..|++.|..+|..++..+-.|-..
T Consensus 424 p~LV~LL~s~d~~i~~~al~~L~NLt~~ 451 (810)
T 3now_A 424 HALMDLARGGNQSCLYGVVTTFVNLCNA 451 (810)
T ss_dssp HHHHHHHHTTCGGGHHHHHHHHHHHTTC
T ss_pred HHHHHHhCCCChHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999888774
No 27
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=83.02 E-value=40 Score=33.62 Aligned_cols=110 Identities=16% Similarity=0.176 Sum_probs=74.3
Q ss_pred hhcccccchhhhhhHHHHHHHHHHhhhccccccchHHHHHHHHHhhcCCCCCCchHHHHHHHHHHhhhhhcCchhhhHHh
Q psy1379 299 LVNHSQAGLCVMLAHCLLSFVELMDHGIVSWNILETVFIKTVADHVNNPNPVPEKEIVQASLSILESIALNSVGKFSQVE 378 (446)
Q Consensus 299 l~~~~e~g~~~~La~~L~aF~eLm~~~i~swd~l~~~Fikki~~~vn~~~~~~d~~il~~~l~iLE~~vl~s~~~~~~v~ 378 (446)
+.....++...+...+...+..|-.+. -.++.. ...+..++.++... |..+...+...|-++..+++...+.+.
T Consensus 232 L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~~-~~~i~~L~~ll~~~----~~~v~~~a~~~L~~L~~~~~~~~~~~~ 305 (529)
T 1jdh_A 232 LGLHLTDPSQRLVQNCLWTLRNLSDAA-TKQEGM-EGLLGTLVQLLGSD----DINVVTCAAGILSNLTCNNYKNKMMVC 305 (529)
T ss_dssp HHTTTTSSCHHHHHHHHHHHHHHHTTC-TTCSCC-HHHHHHHHHHTTCS----CHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHhCCChHHHHHHHHHHHHHhcCC-hhhHHH-HhHHHHHHHHHcCC----CHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 334444443334444555555554432 334433 46788888888543 778999999999999888776677777
Q ss_pred hhcchhhhhhhccc--CChHHHHhHHHHHHHHhccCCc
Q psy1379 379 NHLTLTNLVMHLQN--QSPIIQQNAIALINALFIKAEP 414 (446)
Q Consensus 379 ~Ev~l~~l~~~lq~--~~~~~~~~a~al~nal~~~a~~ 414 (446)
+.-.++.|+..|.. .++.++..|+..+-.|....++
T Consensus 306 ~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~ 343 (529)
T 1jdh_A 306 QVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQE 343 (529)
T ss_dssp HTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTT
T ss_pred HcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCch
Confidence 66678888888876 3478999998888887655444
No 28
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=82.72 E-value=3.4 Score=40.17 Aligned_cols=131 Identities=11% Similarity=0.118 Sum_probs=82.3
Q ss_pred HHHHHH-Hhhhhhhhc-ccccchhhhhhHHHHHHHHHHhhhc-cccccchHHHHHHHHHhhcCCCCCCchHHHHHHHHHH
Q psy1379 287 FSIQFL-LDCFAVLVN-HSQAGLCVMLAHCLLSFVELMDHGI-VSWNILETVFIKTVADHVNNPNPVPEKEIVQASLSIL 363 (446)
Q Consensus 287 fa~efl-~dgl~~l~~-~~e~g~~~~La~~L~aF~eLm~~~i-~swd~l~~~Fikki~~~vn~~~~~~d~~il~~~l~iL 363 (446)
.+..|. ..|+..++. ...++...+...+..+.-.+-..+. ..+..+.+..+..++..++.. .+..+...|+.-|
T Consensus 73 na~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~---~~~~v~~~A~~AL 149 (296)
T 1xqr_A 73 NAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRD---ACDTVRVKALFAI 149 (296)
T ss_dssp HHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHC---SCHHHHHHHHHHH
T ss_pred hHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccC---CCHHHHHHHHHHH
Confidence 344444 344444444 4444433333444444433333221 223334445667777888643 2567899999999
Q ss_pred hhhhhcCchhhhHHhhhcchhhhhhhcccCChHHHHhHHHHHHHHhccCCchhHHHhh
Q psy1379 364 ESIALNSVGKFSQVENHLTLTNLVMHLQNQSPIIQQNAIALINALFIKAEPSKRKVIS 421 (446)
Q Consensus 364 E~~vl~s~~~~~~v~~Ev~l~~l~~~lq~~~~~~~~~a~al~nal~~~a~~~~r~~~~ 421 (446)
-+++-+.+...+.+...=-++-|+..|++.++.+|.+|..+|..|... +++.++.+.
T Consensus 150 snl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~-~~~~~~~vv 206 (296)
T 1xqr_A 150 SCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG-HPEHKGTLC 206 (296)
T ss_dssp HHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHH
T ss_pred HHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC-ChHHHHHHH
Confidence 999988775555565544588899999999999999999999988877 455555443
No 29
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=82.41 E-value=11 Score=33.19 Aligned_cols=95 Identities=12% Similarity=0.167 Sum_probs=60.7
Q ss_pred chhHHhhhccCCChHHHHhHHHHHHHHhhccCChhhHHHHHHhhhhhhHHHHHHhhhcCCCCCCchhhhhcchHHHHHHH
Q psy1379 76 TLTNLVMHLQNQSPIIQQNAIALINALFIKAEPSKRKVISATMCSKQVRNAILTSVLQPSGGQVGAEMAHQLYVLQTLTL 155 (446)
Q Consensus 76 ~~~~lv~~L~~~d~~iq~nalaLiNaL~~~a~~~~~~~~~~~L~~~~~r~~v~~~ii~~~~~~~~~e~ah~L~~~Q~l~l 155 (446)
....|.++|++.++..|..||.|+.+++.+|++. |-..+.++.+-..+.+ ++. . .-.+ +-.+ ..++...+
T Consensus 49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~----fh~eias~~Fl~eL~k-l~~-~-k~~~-~~~~--~~Vk~kil 118 (149)
T 3g2s_A 49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKR----FHDEVGKFRFLNELIK-VVS-P-KYLG-SRTS--EKVKNKIL 118 (149)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHH----HHHHHTSHHHHHHHHH-HHC-T-TTTG-GGSC--HHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHH----HHHHHhhHHHHHHHHH-HHc-c-cccC-CCCC--HHHHHHHH
Confidence 3456778889999999999999999999999952 3333333344334444 442 1 1001 1111 57788889
Q ss_pred HHHHHHhcccCCCCCHHHHHHHHHHHH
Q psy1379 156 GLLEQRMNTKMDPQDQDAHDKIKELRR 182 (446)
Q Consensus 156 ~~Le~r~~~~~d~~~~~h~~~L~~Lw~ 182 (446)
.+++.|... | +++|.-.+.-+.|.+
T Consensus 119 ~li~~W~~~-f-~~~p~i~~~Y~~Lk~ 143 (149)
T 3g2s_A 119 ELLYSWTVG-L-PEEVKIAEAYQMLKK 143 (149)
T ss_dssp HHHHHHHHH-C-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHH-h-CCCchHHHHHHHHHH
Confidence 999999875 3 556765555555544
No 30
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=81.87 E-value=13 Score=32.50 Aligned_cols=96 Identities=14% Similarity=0.144 Sum_probs=59.5
Q ss_pred hhHHhhhccCCChHHHHhHHHHHHHHhhccCChhhHHHHHHhhhhhhHHHHHHhhhcCCCCCCchhhhhcchHHHHHHHH
Q psy1379 77 LTNLVMHLQNQSPIIQQNAIALINALFIKAEPSKRKVISATMCSKQVRNAILTSVLQPSGGQVGAEMAHQLYVLQTLTLG 156 (446)
Q Consensus 77 ~~~lv~~L~~~d~~iq~nalaLiNaL~~~a~~~~~~~~~~~L~~~~~r~~v~~~ii~~~~~~~~~e~ah~L~~~Q~l~l~ 156 (446)
...|.++|++.|+..|..||.|+.+++.+|++ .|-..+.++.+-..+.+ ++. . .-.+. -.+ ..+|...+.
T Consensus 40 ~rai~krl~~~n~~vql~AL~LLe~~vkNCG~----~fh~evas~~Fl~eL~k-l~~-~-k~~~~-~~~--~~Vk~kil~ 109 (148)
T 1mhq_A 40 PWLLAHKIQSPQEKEALYALTVLEMCMNHCGE----KFHSEVAKFRFLNELIK-VLS-P-KYLGS-WAT--GKVKGRVIE 109 (148)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCH----HHHHHHTSHHHHHHHHH-TTC-C-STTSC-CCC--HHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCH----HHHHHHhhHHHHHHHHH-HHc-c-ccCCC-CCC--HHHHHHHHH
Confidence 45577888889999999999999999999984 33333344444444444 442 1 10000 011 467777788
Q ss_pred HHHHHhcccCCCCCHHHHHHHHHHHHHh
Q psy1379 157 LLEQRMNTKMDPQDQDAHDKIKELRRVA 184 (446)
Q Consensus 157 ~Le~r~~~~~d~~~~~h~~~L~~Lw~~a 184 (446)
+++.|... | +.+|.-.++-+.|..-.
T Consensus 110 li~~W~~~-f-~~~p~i~~~y~~Lk~~G 135 (148)
T 1mhq_A 110 ILFSWTVW-F-PEDIKIRDAYQMLKKQG 135 (148)
T ss_dssp HHHHHHHH-C-TTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHH-c-CCCchHHHHHHHHHHcC
Confidence 88888875 3 45565555555554433
No 31
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=80.45 E-value=70 Score=34.76 Aligned_cols=98 Identities=16% Similarity=0.217 Sum_probs=65.7
Q ss_pred hhhHHHHHHHHHHhhhccccccchHHHHHHHHHhhcCCCCCCchHHHHHHHHHHhhhhhcCchhhhHHhhhcchhhhhhh
Q psy1379 310 MLAHCLLSFVELMDHGIVSWNILETVFIKTVADHVNNPNPVPEKEIVQASLSILESIALNSVGKFSQVENHLTLTNLVMH 389 (446)
Q Consensus 310 ~La~~L~aF~eLm~~~i~swd~l~~~Fikki~~~vn~~~~~~d~~il~~~l~iLE~~vl~s~~~~~~v~~Ev~l~~l~~~ 389 (446)
+...+..+...|.... ..+... ...+..++..++.. |..+...++..|-++...++.....+.+.--++.|+..
T Consensus 376 ~~~~a~~~L~~L~~~~-~~~~~~-~~~i~~Lv~lL~~~----d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~l 449 (780)
T 2z6g_A 376 LVQNCLWTLRNLSDAA-TKQEGM-EGLLGTLVQLLGSD----DINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRT 449 (780)
T ss_dssp HHHHHHHHHHHHHTTC-TTCSCC-HHHHHHHHHHTTCS----CHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhccc-hhhhhh-hhHHHHHHHHHcCC----CHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence 4444444455554433 234333 56778888888653 67899999999999988877667777766678888888
Q ss_pred ccc-CC-hHHHHhHHHHHHHHhccCC
Q psy1379 390 LQN-QS-PIIQQNAIALINALFIKAE 413 (446)
Q Consensus 390 lq~-~~-~~~~~~a~al~nal~~~a~ 413 (446)
|.. .+ +.++..|+..+-.|....+
T Consensus 450 L~~~~~~~~v~~~Al~aL~nL~~~~~ 475 (780)
T 2z6g_A 450 VLRAGDREDITEPAICALRHLTSRHQ 475 (780)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTSSST
T ss_pred HHccCCHHHHHHHHHHHHHHHHhcCc
Confidence 876 33 3778777777666654333
No 32
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=77.84 E-value=15 Score=32.96 Aligned_cols=96 Identities=15% Similarity=0.206 Sum_probs=60.9
Q ss_pred hhHHhhhccCCChHHHHhHHHHHHHHhhccCChhhHHHHHHhhhhhhHHHHHHhhhcCCCCCCchhhhhcchHHHHHHHH
Q psy1379 77 LTNLVMHLQNQSPIIQQNAIALINALFIKAEPSKRKVISATMCSKQVRNAILTSVLQPSGGQVGAEMAHQLYVLQTLTLG 156 (446)
Q Consensus 77 ~~~lv~~L~~~d~~iq~nalaLiNaL~~~a~~~~~~~~~~~L~~~~~r~~v~~~ii~~~~~~~~~e~ah~L~~~Q~l~l~ 156 (446)
...|.++|++.++..|..||.|+.+|+.+|+.. |-..+.++.+-..+.+ ++. . ...++ -.+ ..++...+.
T Consensus 52 ~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~----Fh~evas~~Fl~eL~k-l~~-~-k~~~~-~~~--~~Vk~kil~ 121 (171)
T 1juq_A 52 VRLLAHKIQSPQEWEALQALTVLEACMKNCGRR----FHNEVGKFRFLNELIK-VVS-P-KYLGD-RVS--EKVKTKVIE 121 (171)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHH----HHHHHTSHHHHHHHHH-HHC-C-CCCCT-TSC--HHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHH----HHHHHhhHHHHHHHHH-Hhc-c-ccCCC-CCC--HHHHHHHHH
Confidence 456788899999999999999999999998842 2333333333333333 442 1 11111 111 477888899
Q ss_pred HHHHHhcccCCCCCHHHHHHHHHHHHHh
Q psy1379 157 LLEQRMNTKMDPQDQDAHDKIKELRRVA 184 (446)
Q Consensus 157 ~Le~r~~~~~d~~~~~h~~~L~~Lw~~a 184 (446)
+++.|... | +.+|.-+++-+.|....
T Consensus 122 li~~W~~~-f-~~~~~i~~~y~~Lk~~G 147 (171)
T 1juq_A 122 LLYSWTMA-L-PEEAKIKDAYHMLKRQG 147 (171)
T ss_dssp HHHHHHHH-C-TTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHH-c-CCCcHHHHHHHHHHHCC
Confidence 99999875 3 45666555555555543
No 33
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=77.59 E-value=12 Score=37.73 Aligned_cols=144 Identities=15% Similarity=0.135 Sum_probs=82.7
Q ss_pred HHHHHHHhhhhhhhcccc----cc-------hhhhhhHHHHHHHHHHhh--hccccccchHHHHHHHHHhhcCCCCCCch
Q psy1379 287 FSIQFLLDCFAVLVNHSQ----AG-------LCVMLAHCLLSFVELMDH--GIVSWNILETVFIKTVADHVNNPNPVPEK 353 (446)
Q Consensus 287 fa~efl~dgl~~l~~~~e----~g-------~~~~La~~L~aF~eLm~~--~i~swd~l~~~Fikki~~~vn~~~~~~d~ 353 (446)
+..+|..+|+..+.+... .+ .......+++.+-.+|.+ |.-..= =....+..++.-+..+ ..
T Consensus 102 WV~~F~~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl-~~~~~i~~l~~~L~s~----~~ 176 (383)
T 3eg5_B 102 WVQTFGAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTML-ETEEGILLLVRAMDPA----VP 176 (383)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHH-TCSSHHHHHHHTCCTT----SH
T ss_pred HHHHHHHccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHH-cChHHHHHHHHHhCCC----ch
Confidence 566666677765433211 11 113445556666566552 211100 0112355666666443 34
Q ss_pred HHHHHHHHHHhhhhhcCc-h-hhhHHh----------hhcchhhhhhhccc-CChHHHHhHHHHHHHHhccCCc-hhHHH
Q psy1379 354 EIVQASLSILESIALNSV-G-KFSQVE----------NHLTLTNLVMHLQN-QSPIIQQNAIALINALFIKAEP-SKRKV 419 (446)
Q Consensus 354 ~il~~~l~iLE~~vl~s~-~-~~~~v~----------~Ev~l~~l~~~lq~-~~~~~~~~a~al~nal~~~a~~-~~r~~ 419 (446)
.+-..++.+|=-+..-+. . .+..|- +..+++.++..|.+ .+.+.++.+|.|||++...+++ ..|-.
T Consensus 177 ~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~ 256 (383)
T 3eg5_B 177 NMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVH 256 (383)
T ss_dssp HHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 555566666643332221 1 133332 22468899999987 6889999999999999999887 66777
Q ss_pred hhHhhhhhhhHHHHHh
Q psy1379 420 ISATMCSKQVRNAILT 435 (446)
Q Consensus 420 ~~~~l~~~~~r~~i~~ 435 (446)
+-..+...++-..+-+
T Consensus 257 lR~ef~~~Gl~~il~~ 272 (383)
T 3eg5_B 257 IRSELMRLGLHQVLQE 272 (383)
T ss_dssp HHHHHHHTTHHHHHHH
T ss_pred HHHHHHHCChHHHHHH
Confidence 7777777776665543
No 34
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=75.68 E-value=95 Score=33.70 Aligned_cols=78 Identities=14% Similarity=0.126 Sum_probs=58.6
Q ss_pred HHHHHHHhhcCCCCCCchHHHHHHHHHHhhhhhcCchhhhHHhhhcchhhhhhhcccCChHHHHhHHHHHHHHhccCCch
Q psy1379 336 FIKTVADHVNNPNPVPEKEIVQASLSILESIALNSVGKFSQVENHLTLTNLVMHLQNQSPIIQQNAIALINALFIKAEPS 415 (446)
Q Consensus 336 Fikki~~~vn~~~~~~d~~il~~~l~iLE~~vl~s~~~~~~v~~Ev~l~~l~~~lq~~~~~~~~~a~al~nal~~~a~~~ 415 (446)
.+..++.++... +..+...++..|.++... +.....+.+.=-++.|+..+...|+.++.+|...+..|....+..
T Consensus 594 ~i~~Lv~lL~~~----~~~v~~~a~~aL~~L~~~-~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~~~~~~ 668 (780)
T 2z6g_A 594 TIPLFVQLLYSP----IENIQRVAAGVLCELAQD-KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQD 668 (780)
T ss_dssp CHHHHHHGGGCS----CHHHHHHHHHHHHHHHTS-HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHTTSCTT
T ss_pred cHHHHHHHHcCC----CHHHHHHHHHHHHHHhcC-HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHh
Confidence 345566777654 668999999999888754 334566666556888888899999999999999999988777654
Q ss_pred hHH
Q psy1379 416 KRK 418 (446)
Q Consensus 416 ~r~ 418 (446)
-++
T Consensus 669 ~~~ 671 (780)
T 2z6g_A 669 YKK 671 (780)
T ss_dssp HHH
T ss_pred hhc
Confidence 443
No 35
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=75.38 E-value=30 Score=30.35 Aligned_cols=94 Identities=11% Similarity=0.172 Sum_probs=55.6
Q ss_pred chhHHhhhcc-CCChHHHHhHHHHHHHHhhccCChhhHHHHHHhhhhhhHHH-HHHhhhcCCCCCCchhhhhcchHHHHH
Q psy1379 76 TLTNLVMHLQ-NQSPIIQQNAIALINALFIKAEPSKRKVISATMCSKQVRNA-ILTSVLQPSGGQVGAEMAHQLYVLQTL 153 (446)
Q Consensus 76 ~~~~lv~~L~-~~d~~iq~nalaLiNaL~~~a~~~~~~~~~~~L~~~~~r~~-v~~~ii~~~~~~~~~e~ah~L~~~Q~l 153 (446)
....|.++|+ ..++..|..||.|+.+|+.+|++. |-..+.++.+-.. +.+ ++. ...... ..++..
T Consensus 54 a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~----fh~eva~~~fl~e~Lvk-~~~-~k~~~~-------~~Vk~k 120 (157)
T 1elk_A 54 ALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHR----FHVLVASQDFVESVLVR-TIL-PKNNPP-------TIVHDK 120 (157)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHH----HHHHHTSHHHHHHHTHH-HHS-TTTCCC-------HHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHH----HHHHHhhHHHHHHHHHH-Hhc-cCCCCc-------HHHHHH
Confidence 3456888997 489999999999999999999842 3333333333333 223 332 111111 356777
Q ss_pred HHHHHHHHhcc-cCCCCCHHHHHHHHHHHH
Q psy1379 154 TLGLLEQRMNT-KMDPQDQDAHDKIKELRR 182 (446)
Q Consensus 154 ~l~~Le~r~~~-~~d~~~~~h~~~L~~Lw~ 182 (446)
.+.+++.|... +.+|+-..-++.-+.|..
T Consensus 121 il~li~~W~~~f~~~p~l~~i~~~Y~~Lk~ 150 (157)
T 1elk_A 121 VLNLIQSWADAFRSSPDLTGVVTIYEDLRR 150 (157)
T ss_dssp HHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcchHHHHHHHHHHHH
Confidence 78888888763 234443444444444443
No 36
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=74.49 E-value=88 Score=32.72 Aligned_cols=74 Identities=14% Similarity=0.114 Sum_probs=55.4
Q ss_pred HHHHHHHhhcCCCCCCchHHHHHHHHHHhhhhhcCchhhhHHhhhcchhhhhhhcccCChHHHHhHHHHHHHHhccCCc
Q psy1379 336 FIKTVADHVNNPNPVPEKEIVQASLSILESIALNSVGKFSQVENHLTLTNLVMHLQNQSPIIQQNAIALINALFIKAEP 414 (446)
Q Consensus 336 Fikki~~~vn~~~~~~d~~il~~~l~iLE~~vl~s~~~~~~v~~Ev~l~~l~~~lq~~~~~~~~~a~al~nal~~~a~~ 414 (446)
.+..++.++... +..+...++..|.++... +.....+++.=.++.|...++..|+.++.+|...+..|....+.
T Consensus 458 ~i~~Lv~lL~~~----~~~v~~~a~~aL~~l~~~-~~~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~~~~~~ 531 (644)
T 2z6h_A 458 TIPLFVQLLYSP----IENIQRVAAGVLCELAQD-KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQ 531 (644)
T ss_dssp CHHHHHHHTTCS----CHHHHHHHHHHHHHHHTS-HHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTTSCH
T ss_pred cHHHHHHHHcCC----CHHHHHHHHHHHHHHHcC-HHHHHHHHHcCChhHHHHHHcCCCHHHHHHHHHHHHHHhccCcH
Confidence 455566777553 567999999999998754 33466666665688888899999999999988888777766654
No 37
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=74.16 E-value=21 Score=31.65 Aligned_cols=73 Identities=14% Similarity=0.243 Sum_probs=46.3
Q ss_pred chhHHhhhccCCChHHHHhHHHHHHHHhhccCChhhHHHHHHhhhhhhHHHHHHhhhcCCCCCCchhhhhcchHHHHHHH
Q psy1379 76 TLTNLVMHLQNQSPIIQQNAIALINALFIKAEPSKRKVISATMCSKQVRNAILTSVLQPSGGQVGAEMAHQLYVLQTLTL 155 (446)
Q Consensus 76 ~~~~lv~~L~~~d~~iq~nalaLiNaL~~~a~~~~~~~~~~~L~~~~~r~~v~~~ii~~~~~~~~~e~ah~L~~~Q~l~l 155 (446)
....|.++|+..++..|..||.|+.+|+.+|+..= -..+.++.+-..+.+ ++. .. . | ..++...+
T Consensus 53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~F----h~evas~~Fl~el~~-l~~-~~--~-----~--~~Vk~kil 117 (163)
T 1x5b_A 53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGKIF----HLEVCSRDFATEVRA-VIK-NK--A-----H--PKVCEKLK 117 (163)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHH----HHHHTSHHHHHHHHH-HHH-TT--C-----C--HHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHH----HHHHhhHHHHHHHHH-HHc-cC--C-----C--HHHHHHHH
Confidence 34567888999999999999999999999998532 222222233222333 332 11 1 1 25666667
Q ss_pred HHHHHHhc
Q psy1379 156 GLLEQRMN 163 (446)
Q Consensus 156 ~~Le~r~~ 163 (446)
.+++.|..
T Consensus 118 ~li~~W~~ 125 (163)
T 1x5b_A 118 SLMVEWSE 125 (163)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77777765
No 38
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=70.67 E-value=34 Score=31.82 Aligned_cols=107 Identities=7% Similarity=0.076 Sum_probs=77.1
Q ss_pred HHHHHHHHhcCCcccccC--chHHHHHHHHhhcCCCCCCCchhhhHHHHHHHHHhhCCCCCccchhhhhccc---chhHH
Q psy1379 6 LLSFVELMDHGIVSWNIL--ETVFIKTVADHVNNPNPVPEKEIVQASLSILESIALNSVGKFSQFSQVENHL---TLTNL 80 (446)
Q Consensus 6 L~a~~~Lme~~~~~W~~l--~~~fI~ki~~~v~~~~~~~~~~i~~~alsIL~~~V~~s~~~y~gf~~v~~~v---~~~~l 80 (446)
-.|+..++++=. .|... -+.++.++...+.+. +..+-+.++..|.+++.+.+... ..+.+.+ -++.|
T Consensus 125 ~~al~~i~~~~~-~~~~~~~l~~ll~~l~~~l~~k----~~~vk~~al~~l~~~~~~~~~~~---~~l~~~l~~~iip~l 196 (249)
T 2qk1_A 125 RKALLTICKYYD-PLASSGRNEDMLKDILEHMKHK----TPQIRMECTQLFNASMKEEKDGY---STLQRYLKDEVVPIV 196 (249)
T ss_dssp HHHHHHHHHHSC-TTCTTCTTHHHHHHHHHHTTCS----SHHHHHHHHHHHHHHHHHCCSCS---HHHHHHHTTTHHHHH
T ss_pred HHHHHHHHHHcc-ccccCCcHHHHHHHHHHHHcCC----ChHHHHHHHHHHHHHHHHcCCcc---hhHHHHHHHHHHHHH
Confidence 344555555411 12222 357899999998774 57899999999999998876422 2233334 26788
Q ss_pred hhhccCCChHHHHhHHHHHHHHhhccCChhhHHHHHHhhh
Q psy1379 81 VMHLQNQSPIIQQNAIALINALFIKAEPSKRKVISATMCS 120 (446)
Q Consensus 81 v~~L~~~d~~iq~nalaLiNaL~~~a~~~~~~~~~~~L~~ 120 (446)
.+.+..++..+...|...+.++.+.-++..-..+++.|.+
T Consensus 197 ~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~Ld~ 236 (249)
T 2qk1_A 197 IQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHLDN 236 (249)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGHHHHHHSCH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhH
Confidence 8889999999999999999999988887777777777744
No 39
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=69.57 E-value=22 Score=31.33 Aligned_cols=137 Identities=11% Similarity=0.089 Sum_probs=71.3
Q ss_pred ccccCchHHHHHHHHhhcCCCCCCCchhhhHHHHHHHHHhhCCCCCccchhhhhcccchhHHhhhccC-CChHHHHhHHH
Q psy1379 19 SWNILETVFIKTVADHVNNPNPVPEKEIVQASLSILESIALNSVGKFSQFSQVENHLTLTNLVMHLQN-QSPIIQQNAIA 97 (446)
Q Consensus 19 ~W~~l~~~fI~ki~~~v~~~~~~~~~~i~~~alsIL~~~V~~s~~~y~gf~~v~~~v~~~~lv~~L~~-~d~~iq~nala 97 (446)
+-|-++..|=..|-.-.+... +..+. ..-|.|-+.+ ...+. .+.-....|.++|+. .++..|..||.
T Consensus 9 ~~~~~~t~~~~~IekATs~~l--~~~Dw-~~ileicD~I-n~~~~--------~pkeA~ral~KRl~~~~n~~~~l~AL~ 76 (152)
T 3rru_A 9 SHDPYATSVGHLIEKATFAGV--QTEDW-GQFMHICDII-NTTQD--------GPKDAVKALKKRISKNYNHKEIQLTLS 76 (152)
T ss_dssp --CGGGSHHHHHHHHHTCSSC--CSCCH-HHHHHHHHHH-HHSTT--------HHHHHHHHHHHHHTTCCBHHHHHHHHH
T ss_pred CCCCCCChHHHHHHHHcCCCC--CCccH-HHHHHHHHHH-hCCCc--------cHHHHHHHHHHHHcCCCChHHHHHHHH
Confidence 345555555444444444442 22333 2455555543 33331 122335567888885 68889999999
Q ss_pred HHHHHhhccCChhhHHHHHHhhhhhhHHH-HHHhhhcCCCCCCchhhhhcchHHHHHHHHHHHHHhcc-cCCCCCHHHHH
Q psy1379 98 LINALFIKAEPSKRKVISATMCSKQVRNA-ILTSVLQPSGGQVGAEMAHQLYVLQTLTLGLLEQRMNT-KMDPQDQDAHD 175 (446)
Q Consensus 98 LiNaL~~~a~~~~~~~~~~~L~~~~~r~~-v~~~ii~~~~~~~~~e~ah~L~~~Q~l~l~~Le~r~~~-~~d~~~~~h~~ 175 (446)
|+.+++.+|+.. |-..+.++.+-.- +.+ ++. ....+. ..++...+.+++.|... +-||+-+.-.+
T Consensus 77 LLe~cvkNCG~~----fh~eiask~Fl~e~L~k-l~~-~~~~~~-------~~Vk~kil~li~~Wa~~F~~~p~l~~i~~ 143 (152)
T 3rru_A 77 LIDMCVQNCGPS----FQSLIVKKEFVKENLVK-LLN-PRYNLP-------LDIQNRILNFIKTWSQGFPGGVDVSEVKE 143 (152)
T ss_dssp HHHHHHHHSCHH----HHHHHSSHHHHTTTTGG-GGS-GGGCCC-------HHHHHHHHHHHHHHHTCCSSSCCCHHHHH
T ss_pred HHHHHHHhcCHH----HHHHHHhhHhHHHHHHH-Hhc-CCCCCc-------HHHHHHHHHHHHHHHHHhCCCCcchHHHH
Confidence 999999999953 2223333332221 222 332 111111 35777778888888862 22343343444
Q ss_pred HHHHH
Q psy1379 176 KIKEL 180 (446)
Q Consensus 176 ~L~~L 180 (446)
+-+.|
T Consensus 144 ~Y~~L 148 (152)
T 3rru_A 144 VYLDL 148 (152)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 43333
No 40
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=68.93 E-value=19 Score=33.20 Aligned_cols=93 Identities=10% Similarity=0.159 Sum_probs=57.8
Q ss_pred hhHHhhhccCCChHHHHhHHHHHHHHhhccCChhhHHHHHHhhhhhhHHHHHHhhhcCCCCCCchhhhhcchHHHHHHHH
Q psy1379 77 LTNLVMHLQNQSPIIQQNAIALINALFIKAEPSKRKVISATMCSKQVRNAILTSVLQPSGGQVGAEMAHQLYVLQTLTLG 156 (446)
Q Consensus 77 ~~~lv~~L~~~d~~iq~nalaLiNaL~~~a~~~~~~~~~~~L~~~~~r~~v~~~ii~~~~~~~~~e~ah~L~~~Q~l~l~ 156 (446)
...|.++|++.|+..|..||.|+++++.++++. |-..+.++.+-..+.+ ++. . . .. ..+|...+.
T Consensus 44 ~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~----f~~eva~~~fl~~l~~-l~~-~-~-~~-------~~Vk~kil~ 108 (220)
T 1dvp_A 44 FAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAP----VHEEVFTKENCEMFSS-FLE-S-T-PH-------ENVRQKMLE 108 (220)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHH----HHHHHSSHHHHHHHHH-HHH-H-C-SC-------HHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHH----HHHHHHhHHHHHHHHH-Hhc-C-C-Cc-------HHHHHHHHH
Confidence 445778888999999999999999999998742 2222222222222222 332 1 1 11 366888888
Q ss_pred HHHHHhcc-cCCCCCHHHHHHHHHHHHHh
Q psy1379 157 LLEQRMNT-KMDPQDQDAHDKIKELRRVA 184 (446)
Q Consensus 157 ~Le~r~~~-~~d~~~~~h~~~L~~Lw~~a 184 (446)
+++.|... +-||.-....+....|....
T Consensus 109 li~~W~~~f~~~~~~~~i~~~y~~Lk~~G 137 (220)
T 1dvp_A 109 LVQTWAYAFRSSDKYQAIKDTMTILKAKG 137 (220)
T ss_dssp HHHHHHHHTTTCSSCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhhcC
Confidence 99999864 22444444566666666655
No 41
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=68.00 E-value=10 Score=40.59 Aligned_cols=115 Identities=8% Similarity=0.092 Sum_probs=84.8
Q ss_pred hHHHHHHHHHhcCCcccccCchHHHHHHHHhhcCCCCCC----CchhhhHHHHHHHHHhhCCCCCccchhhhhcccchhH
Q psy1379 4 HCLLSFVELMDHGIVSWNILETVFIKTVADHVNNPNPVP----EKEIVQASLSILESIALNSVGKFSQFSQVENHLTLTN 79 (446)
Q Consensus 4 y~L~a~~~Lme~~~~~W~~l~~~fI~ki~~~v~~~~~~~----~~~i~~~alsIL~~~V~~s~~~y~gf~~v~~~v~~~~ 79 (446)
.+..|+.+|-.+.. .++.+....|.++|.++....+.+ ...++-+|+..|.+++..++..- +.|.+.=-++.
T Consensus 374 ~A~~aL~nLs~~~~-~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~---~~I~~~g~I~~ 449 (584)
T 3l6x_A 374 AASGALRNLAVDAR-NKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAA---KKLRETQGIEK 449 (584)
T ss_dssp HHHHHHHHHHTTCS-CHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHH---HHHHHTTHHHH
T ss_pred HHHHHHHHHhCChh-HHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHH---HHHHHCCChHH
Confidence 45666777776653 677778888999999998752111 24567789999999998876543 66666656899
Q ss_pred HhhhccCC--ChHHHHhHHHHHHHHhhccCChhhHHHHHHhhhhhhHHHHH
Q psy1379 80 LVMHLQNQ--SPIIQQNAIALINALFIKAEPSKRKVISATMCSKQVRNAIL 128 (446)
Q Consensus 80 lv~~L~~~--d~~iq~nalaLiNaL~~~a~~~~~~~~~~~L~~~~~r~~v~ 128 (446)
|+..|.+. .+.++..|-.++-.|+.+ +++-+.+++.|+++.-.
T Consensus 450 Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~------~elr~~~kk~G~~~~~f 494 (584)
T 3l6x_A 450 LVLINKSGNRSEKEVRAAALVLQTIWGY------KELRKPLEKEGWKKSDF 494 (584)
T ss_dssp HHHHHTCSSSCHHHHHHHHHHHHHHHTS------HHHHHHHHTTTCCGGGG
T ss_pred HHHHHhCCCCChHHHHHHHHHHHHHHcC------HHHHHHHHHcCCCHHHh
Confidence 99999875 889999999999999875 55666666777776443
No 42
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=66.94 E-value=1.1e+02 Score=30.96 Aligned_cols=98 Identities=16% Similarity=0.136 Sum_probs=62.8
Q ss_pred hhhhHHHHHHHHHHhhhccccc-cchHHHHHHHHHhhcCCCCCCchHHHHHHHHHHhhhhhcCchhhhHHhhhcchhhhh
Q psy1379 309 VMLAHCLLSFVELMDHGIVSWN-ILETVFIKTVADHVNNPNPVPEKEIVQASLSILESIALNSVGKFSQVENHLTLTNLV 387 (446)
Q Consensus 309 ~~La~~L~aF~eLm~~~i~swd-~l~~~Fikki~~~vn~~~~~~d~~il~~~l~iLE~~vl~s~~~~~~v~~Ev~l~~l~ 387 (446)
++...+..++..|-++....-. ......+.+++.++... +..+...++..|.+++-.++.....+-+.=-++.|+
T Consensus 247 ~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~----~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~ 322 (510)
T 3ul1_B 247 EVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGAT----ELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFP 322 (510)
T ss_dssp HHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCS----CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC
T ss_pred HHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCC----ChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHH
Confidence 4455555555555443211101 12233456677888654 668999999999999988876555565555577788
Q ss_pred hhcccCChHHHHhHHHHHHHHhc
Q psy1379 388 MHLQNQSPIIQQNAIALINALFI 410 (446)
Q Consensus 388 ~~lq~~~~~~~~~a~al~nal~~ 410 (446)
..|...++.++..|...+--|..
T Consensus 323 ~LL~~~~~~v~~~A~~aL~nl~a 345 (510)
T 3ul1_B 323 SLLTNPKTNIQKEATWTMSNITA 345 (510)
T ss_dssp -CTTCSSHHHHHHHHHHHHHHTT
T ss_pred HHhcCCCHHHHHHHHHHHHHHHc
Confidence 88888888888887766655543
No 43
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=65.58 E-value=27 Score=32.43 Aligned_cols=86 Identities=12% Similarity=0.216 Sum_probs=54.0
Q ss_pred hhHHhhhccCCChHHHHhHHHHHHHHhhccCChhh-----HHHHHHhhhhhhHHHHHHhhhcCCCCCCchhhhhcchHHH
Q psy1379 77 LTNLVMHLQNQSPIIQQNAIALINALFIKAEPSKR-----KVISATMCSKQVRNAILTSVLQPSGGQVGAEMAHQLYVLQ 151 (446)
Q Consensus 77 ~~~lv~~L~~~d~~iq~nalaLiNaL~~~a~~~~~-----~~~~~~L~~~~~r~~v~~~ii~~~~~~~~~e~ah~L~~~Q 151 (446)
...|.++|++.|+..|..||.|+.+++.++++.=. ++|++.|. + |+. . ... ..++
T Consensus 47 ~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~---------~-l~~-~--~~~-------~~Vk 106 (226)
T 3zyq_A 47 VNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELK---------D-LLK-R--QVE-------VNVR 106 (226)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHH---------H-HHH-H--CCC-------HHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHH---------H-Hhc-c--CCC-------HHHH
Confidence 45577888889999999999999999999985321 34444332 2 332 1 111 4677
Q ss_pred HHHHHHHHHHhccc-CCCCCHHHHHHHHHHHH
Q psy1379 152 TLTLGLLEQRMNTK-MDPQDQDAHDKIKELRR 182 (446)
Q Consensus 152 ~l~l~~Le~r~~~~-~d~~~~~h~~~L~~Lw~ 182 (446)
...+.+++.|...- -||.=+.-.++-+.|..
T Consensus 107 ~kil~li~~W~~~f~~~~~l~~i~~~Y~~Lk~ 138 (226)
T 3zyq_A 107 NKILYLIQAWAHAFRNEPKYKVVQDTYQIMKV 138 (226)
T ss_dssp HHHHHHHHHHHHHTTTCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcchHHHHHHHHHHHh
Confidence 88899999998742 12222224444444444
No 44
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=64.64 E-value=24 Score=30.37 Aligned_cols=32 Identities=16% Similarity=0.353 Sum_probs=28.1
Q ss_pred hhHHhhhccCCChHHHHhHHHHHHHHhhccCC
Q psy1379 77 LTNLVMHLQNQSPIIQQNAIALINALFIKAEP 108 (446)
Q Consensus 77 ~~~lv~~L~~~d~~iq~nalaLiNaL~~~a~~ 108 (446)
...|.++|...++..|..||.|+.+++.+++.
T Consensus 44 ~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~ 75 (140)
T 3ldz_A 44 LRSIMRRVNHKDPHVAMQALTLLGACVSNCGK 75 (140)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHHhcCH
Confidence 45577788888999999999999999999985
No 45
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=62.17 E-value=21 Score=33.37 Aligned_cols=70 Identities=10% Similarity=0.118 Sum_probs=52.8
Q ss_pred HHHHHhhcCCCCCCchHHHHHHHHHHhhhhhcCchhhhHHhhhcchhhhhhhcccCChHHHHhHHHHHHHHh
Q psy1379 338 KTVADHVNNPNPVPEKEIVQASLSILESIALNSVGKFSQVENHLTLTNLVMHLQNQSPIIQQNAIALINALF 409 (446)
Q Consensus 338 kki~~~vn~~~~~~d~~il~~~l~iLE~~vl~s~~~~~~v~~Ev~l~~l~~~lq~~~~~~~~~a~al~nal~ 409 (446)
..++.+++.++ .+.++...++..+-++..+++..+..|.+.=.++.|+..|...++.+|.+|.+.+--|-
T Consensus 11 ~~lV~lL~s~~--~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa 80 (233)
T 3tt9_A 11 ERAVSMLEADH--MLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLV 80 (233)
T ss_dssp HHHHHTCCSSC--CCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCC--chHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 44556775542 12267777888888888887767778877666899999999999999999887776654
No 46
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=59.98 E-value=32 Score=34.78 Aligned_cols=98 Identities=14% Similarity=0.090 Sum_probs=72.3
Q ss_pred hhhHHHHHHHHHHhhhcccc-ccchHHHHHHHHHhhcCCCCCCchHHHHHHHHHHhhhhhcCchhhhHHhhhcchhhhhh
Q psy1379 310 MLAHCLLSFVELMDHGIVSW-NILETVFIKTVADHVNNPNPVPEKEIVQASLSILESIALNSVGKFSQVENHLTLTNLVM 388 (446)
Q Consensus 310 ~La~~L~aF~eLm~~~i~sw-d~l~~~Fikki~~~vn~~~~~~d~~il~~~l~iLE~~vl~s~~~~~~v~~Ev~l~~l~~ 388 (446)
....+..++..|-.++...+ .......+..++.+++.+ |..+...|+.-|-++...++..+..|.+.=-++.|+.
T Consensus 18 ~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~----~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~ 93 (457)
T 1xm9_A 18 YQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSP----NQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVS 93 (457)
T ss_dssp HHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSS----CHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCC----CHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHH
Confidence 34455555555443333334 444556778888888754 6678999999999999876767777777667999999
Q ss_pred hcc-cCChHHHHhHHHHHHHHhcc
Q psy1379 389 HLQ-NQSPIIQQNAIALINALFIK 411 (446)
Q Consensus 389 ~lq-~~~~~~~~~a~al~nal~~~ 411 (446)
.|. ..++.+|.+|...+--|-..
T Consensus 94 lL~~~~~~~~~~~a~~aL~nLa~~ 117 (457)
T 1xm9_A 94 LLRRTGNAEIQKQLTGLLWNLSST 117 (457)
T ss_dssp HHTTCCCHHHHHHHHHHHHHHHTS
T ss_pred HHhhCCCHHHHHHHHHHHHHHhcC
Confidence 999 78999999998888777765
No 47
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=59.27 E-value=27 Score=37.27 Aligned_cols=88 Identities=11% Similarity=0.131 Sum_probs=65.3
Q ss_pred ccccccchHHHHHHHHHhhcCCCCCCchHHHHHHHHHHhhhhhcCchhhhHHhhhcchhhhhhhcccCChHHHHhHHHHH
Q psy1379 326 IVSWNILETVFIKTVADHVNNPNPVPEKEIVQASLSILESIALNSVGKFSQVENHLTLTNLVMHLQNQSPIIQQNAIALI 405 (446)
Q Consensus 326 i~swd~l~~~Fikki~~~vn~~~~~~d~~il~~~l~iLE~~vl~s~~~~~~v~~Ev~l~~l~~~lq~~~~~~~~~a~al~ 405 (446)
...|..-. +..++.++... |..+...|+..|-++...++..+..|.+.=-++.|+..|...++.+|.+|...|
T Consensus 42 ~~~~~~~~---i~~LV~~L~s~----~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL 114 (584)
T 3l6x_A 42 PPNWRQPE---LPEVIAMLGFR----LDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGAL 114 (584)
T ss_dssp CCCCCCCC---HHHHHHHTTCS----CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHH
T ss_pred CCCccccc---HHHHHHHHCCC----CHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHH
Confidence 45665443 34566777553 667888889999999887766677777766789999999999999999999888
Q ss_pred HHHhccCCchhHHHh
Q psy1379 406 NALFIKAEPSKRKVI 420 (446)
Q Consensus 406 nal~~~a~~~~r~~~ 420 (446)
--|-.+.+++-|..|
T Consensus 115 ~nLa~~~~~~nk~~I 129 (584)
T 3l6x_A 115 KNISFGRDQDNKIAI 129 (584)
T ss_dssp HHHTSSSCHHHHHHH
T ss_pred HHHHccCCHHHHHHH
Confidence 777665444455544
No 48
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=58.10 E-value=38 Score=31.54 Aligned_cols=90 Identities=11% Similarity=0.161 Sum_probs=62.3
Q ss_pred HHHHHHHHHhcCCcccccCchHHHHHHHHhhcCCCCCCCchhhhHHHHHHHHHhhCCCCCccchhhhh--cccc--hhHH
Q psy1379 5 CLLSFVELMDHGIVSWNILETVFIKTVADHVNNPNPVPEKEIVQASLSILESIALNSVGKFSQFSQVE--NHLT--LTNL 80 (446)
Q Consensus 5 ~L~a~~~Lme~~~~~W~~l~~~fI~ki~~~v~~~~~~~~~~i~~~alsIL~~~V~~s~~~y~gf~~v~--~~v~--~~~l 80 (446)
++.++..+++... ....++..+...+.+. ++.+...++..|..++.. | |+..+. +.+. ++.+
T Consensus 123 a~~~l~~~~~~~~-----~~~~~~e~l~~~l~~K----npkv~~~~l~~l~~~l~~----f-g~~~~~~k~~l~~i~~~l 188 (278)
T 4ffb_C 123 SMSCILSLCGLDT-----SITQSVELVIPFFEKK----LPKLIAAAANCVYELMAA----F-GLTNVNVQTFLPELLKHV 188 (278)
T ss_dssp HHHHHHHHHHTSS-----SSHHHHHHHGGGGGCS----CHHHHHHHHHHHHHHHHH----H-TTTTCCHHHHHHHHGGGH
T ss_pred HHHHHHHHHHhcC-----cHHHHHHHHHHHHhcc----CHHHHHHHHHHHHHHHHH----h-CCCcCCchhHHHHHHHHH
Confidence 5566666666532 2345667777777664 588999999999998875 2 334432 2222 3567
Q ss_pred hhhccCCChHHHHhHHHHHHHHhhccCC
Q psy1379 81 VMHLQNQSPIIQQNAIALINALFIKAEP 108 (446)
Q Consensus 81 v~~L~~~d~~iq~nalaLiNaL~~~a~~ 108 (446)
...|+.+|..+...|+.++-.|++..++
T Consensus 189 ~k~l~d~~~~VR~aA~~l~~~ly~~~G~ 216 (278)
T 4ffb_C 189 PQLAGHGDRNVRSQTMNLIVEIYKVTGN 216 (278)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHHTC---
T ss_pred HHHHhCCcHHHHHHHHHHHHHHHHHhCc
Confidence 7788999999999999999999987664
No 49
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=57.90 E-value=2e+02 Score=30.85 Aligned_cols=77 Identities=14% Similarity=0.319 Sum_probs=53.3
Q ss_pred hHHHHHHHHhhcCCCCCCCchhhhHHHHHHHHHhhCCCCCccchhhhhccc--chhHHhhhccCCChHHHHhHHHHHHHH
Q psy1379 25 TVFIKTVADHVNNPNPVPEKEIVQASLSILESIALNSVGKFSQFSQVENHL--TLTNLVMHLQNQSPIIQQNAIALINAL 102 (446)
Q Consensus 25 ~~fI~ki~~~v~~~~~~~~~~i~~~alsIL~~~V~~s~~~y~gf~~v~~~v--~~~~lv~~L~~~d~~iq~nalaLiNaL 102 (446)
++++..+++.+.+. +.++.++|+.+|..++...+... +-..+...+ -++.+++.+++.+..++..|+.-++.+
T Consensus 127 p~ll~~L~~~l~~~----~~~~r~~al~~L~~i~~~~~~~~-~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~ 201 (852)
T 4fdd_A 127 PDLLPKLCSLLDSE----DYNTCEGAFGALQKICEDSAEIL-DSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQF 201 (852)
T ss_dssp TTHHHHHHHHHSCS----SHHHHHHHHHHHHHHHHHHTTHH-HHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCC----CHHHHHHHHHHHHHHHHHhHHHh-chhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 45677777788763 67899999999999987765321 000111112 256778888899999999999888877
Q ss_pred hhcc
Q psy1379 103 FIKA 106 (446)
Q Consensus 103 ~~~a 106 (446)
+...
T Consensus 202 ~~~~ 205 (852)
T 4fdd_A 202 IISR 205 (852)
T ss_dssp TTTT
T ss_pred Hhcc
Confidence 7543
No 50
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=56.93 E-value=17 Score=33.85 Aligned_cols=53 Identities=23% Similarity=0.266 Sum_probs=39.5
Q ss_pred cchhhhhhhccc-CChHHHHhHHHHHHHHhccCCc-hhHHHhhHhhhhhhhHHHH
Q psy1379 381 LTLTNLVMHLQN-QSPIIQQNAIALINALFIKAEP-SKRKVISATMCSKQVRNAI 433 (446)
Q Consensus 381 v~l~~l~~~lq~-~~~~~~~~a~al~nal~~~a~~-~~r~~~~~~l~~~~~r~~i 433 (446)
..++.++.++.+ .+.+.++.+|.+||++...+++ ..|-.+-..+..-++-..+
T Consensus 150 ~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il 204 (233)
T 2f31_A 150 ERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVL 204 (233)
T ss_dssp CTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHH
T ss_pred chHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHH
Confidence 467778888874 6779999999999999999887 5566666655555554443
No 51
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=50.49 E-value=50 Score=31.71 Aligned_cols=76 Identities=11% Similarity=0.117 Sum_probs=60.3
Q ss_pred HHHHHHhhcCCCCCCchHHHHHHHHHHhhhhhc--CchhhhHHhhhcchhhhhhhcccCChHHHHhHHHHHHHHhccCCc
Q psy1379 337 IKTVADHVNNPNPVPEKEIVQASLSILESIALN--SVGKFSQVENHLTLTNLVMHLQNQSPIIQQNAIALINALFIKAEP 414 (446)
Q Consensus 337 ikki~~~vn~~~~~~d~~il~~~l~iLE~~vl~--s~~~~~~v~~Ev~l~~l~~~lq~~~~~~~~~a~al~nal~~~a~~ 414 (446)
+.-+..+++.. |..+.-++|.+||.+.-. +......+++ .+++++..+...|+.+..+|+=.|+.|+-+.|.
T Consensus 35 l~~L~~LL~dk----D~~vk~raL~~LeellK~~~~~l~~~~~e~--~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL 108 (265)
T 3b2a_A 35 LFLILELAGED----DETTRLRAFVALGEILKRADSDLRMMVLER--HLDVFINALSQENEKVTIKALRALGYLVKDVPM 108 (265)
T ss_dssp HHHHHHHTTSS----CHHHHHHHHHHHHHHHHHSCHHHHHHHHHH--HHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCB
T ss_pred HHHHHHHHhcc----chHHHHHHHHHHHHHHHhccccccHHHHHH--HHHHHHHHHhccchhHHHHHHHHHHHHHcCCCC
Confidence 34455667554 788999999999988866 3333455555 699999999999999999999999999999987
Q ss_pred hhHH
Q psy1379 415 SKRK 418 (446)
Q Consensus 415 ~~r~ 418 (446)
++..
T Consensus 109 ~~~~ 112 (265)
T 3b2a_A 109 GSKT 112 (265)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 6654
No 52
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=50.32 E-value=22 Score=35.19 Aligned_cols=75 Identities=12% Similarity=0.144 Sum_probs=56.7
Q ss_pred HHHHHHHHhhcCCCCCCCchhhhHHHHHHHHHhhCCCCCccchhhhhcccchhHHhhhccCCChHHHHhHHHHHHHHhhc
Q psy1379 26 VFIKTVADHVNNPNPVPEKEIVQASLSILESIALNSVGKFSQFSQVENHLTLTNLVMHLQNQSPIIQQNAIALINALFIK 105 (446)
Q Consensus 26 ~fI~ki~~~v~~~~~~~~~~i~~~alsIL~~~V~~s~~~y~gf~~v~~~v~~~~lv~~L~~~d~~iq~nalaLiNaL~~~ 105 (446)
..|..++.++.+ .+..+.+.|...|.+++..++..- +.+.+.=.++.|+..|++.+..++.+|...+-.|...
T Consensus 263 g~i~~Lv~lL~~----~~~~v~~~A~~aL~nLa~~~~~~~---~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~ 335 (354)
T 3nmw_A 263 NCLQTLLQHLKS----HSLTIVSNACGTLWNLSARNPKDQ---EALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN 335 (354)
T ss_dssp THHHHHHHHTTC----SCHHHHHHHHHHHHHHTSSCHHHH---HHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHcC----CChHHHHHHHHHHHHHhCCCHHHH---HHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 345666677765 357788899999998876554332 4555555689999999999999999999999998876
Q ss_pred cC
Q psy1379 106 AE 107 (446)
Q Consensus 106 a~ 107 (446)
.+
T Consensus 336 ~~ 337 (354)
T 3nmw_A 336 RP 337 (354)
T ss_dssp CC
T ss_pred CH
Confidence 43
No 53
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=49.00 E-value=48 Score=29.86 Aligned_cols=92 Identities=11% Similarity=0.159 Sum_probs=64.5
Q ss_pred HHHHHHHHHhc-CCcccccCchHHHHHHHHhhcCCCCCCCchhhhHHHHHHHHHhhCCCCCccchhhhhccc--chhHHh
Q psy1379 5 CLLSFVELMDH-GIVSWNILETVFIKTVADHVNNPNPVPEKEIVQASLSILESIALNSVGKFSQFSQVENHL--TLTNLV 81 (446)
Q Consensus 5 ~L~a~~~Lme~-~~~~W~~l~~~fI~ki~~~v~~~~~~~~~~i~~~alsIL~~~V~~s~~~y~gf~~v~~~v--~~~~lv 81 (446)
++.++..+++. +.+.-..+ .+++.-+...+... .+++|.+.|+..|..++..-.. .+.+.+ -++.|+
T Consensus 35 a~~~L~~l~~~~~~~~~~~~-~~i~~~L~~~l~kd---~~~~V~~~a~~~l~~la~~l~~------~~~~~~~~ilp~ll 104 (242)
T 2qk2_A 35 SLEVLEKLLTDHPKLENGEY-GALVSALKKVITKD---SNVVLVAMAGKCLALLAKGLAK------RFSNYASACVPSLL 104 (242)
T ss_dssp HHHHHHHHHHHCSSBCCCCC-HHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHHHHHGG------GGHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCCCCCCH-HHHHHHHHHHhccC---CCHHHHHHHHHHHHHHHHHHhh------hHHHHHHHHHHHHH
Confidence 56667777764 43222233 56777777777522 4789999999999999854321 123333 378889
Q ss_pred hhccCCChHHHHhHHHHHHHHhhcc
Q psy1379 82 MHLQNQSPIIQQNAIALINALFIKA 106 (446)
Q Consensus 82 ~~L~~~d~~iq~nalaLiNaL~~~a 106 (446)
..+...++.++..+...+.+++...
T Consensus 105 ~~l~d~~~~vr~~a~~aL~~~~~~~ 129 (242)
T 2qk2_A 105 EKFKEKKPNVVTALREAIDAIYAST 129 (242)
T ss_dssp HGGGCCCHHHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999998754
No 54
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=48.33 E-value=47 Score=28.89 Aligned_cols=69 Identities=17% Similarity=0.230 Sum_probs=46.9
Q ss_pred HHHHHhhcCCCCCCchHHHHHHHHHHhhhhhcCchh-hhHHhhhcchhhhhhhccc------CChHHHHhHHHHHHHHhc
Q psy1379 338 KTVADHVNNPNPVPEKEIVQASLSILESIALNSVGK-FSQVENHLTLTNLVMHLQN------QSPIIQQNAIALINALFI 410 (446)
Q Consensus 338 kki~~~vn~~~~~~d~~il~~~l~iLE~~vl~s~~~-~~~v~~Ev~l~~l~~~lq~------~~~~~~~~a~al~nal~~ 410 (446)
+-|..-++.+ ++.+.-.||.+||..|.|--.. ...|..+==+++|+..+.. +++.++.+.+.||.+.-.
T Consensus 41 rai~krl~~~----n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 41 WLLAHKIQSP----QEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV 116 (148)
T ss_dssp HHHHHHHTCS----SHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCC----CHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 3344444443 6789999999999999995322 3444433235667666652 578999999999987543
No 55
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=47.63 E-value=31 Score=34.05 Aligned_cols=70 Identities=16% Similarity=0.205 Sum_probs=52.5
Q ss_pred chHHHHHHHHHHhhhhhcCchhhhHHhhhcc-hhhhhhhcccCChHHHHhHHHHHHHHhccCCchhHHHhh
Q psy1379 352 EKEIVQASLSILESIALNSVGKFSQVENHLT-LTNLVMHLQNQSPIIQQNAIALINALFIKAEPSKRKVIS 421 (446)
Q Consensus 352 d~~il~~~l~iLE~~vl~s~~~~~~v~~Ev~-l~~l~~~lq~~~~~~~~~a~al~nal~~~a~~~~r~~~~ 421 (446)
+..+...|+..|-++..++...+..|..+=. ++.|+..|.+.++.+|.+|.+.+-.|-...++..|..+.
T Consensus 97 ~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~ 167 (354)
T 3nmw_A 97 SITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLR 167 (354)
T ss_dssp HHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHH
Confidence 4568888999999999887655666643333 889999999999999999998887775544455565554
No 56
>3d0w_A YFLH protein; GRAM-positive bacterium, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Bacillus subtilis}
Probab=45.21 E-value=10 Score=31.49 Aligned_cols=24 Identities=29% Similarity=0.309 Sum_probs=20.0
Q ss_pred ccCCCCCHHHHHHHHHHHHHhcccc
Q psy1379 164 TKMDPQDQDAHDKIKELRRVAFEID 188 (446)
Q Consensus 164 ~~~d~~~~~h~~~L~~Lw~~a~p~~ 188 (446)
..+||.|+ .++.|++||..+-+++
T Consensus 66 ~~vdP~N~-EerlLkELW~Va~eeE 89 (104)
T 3d0w_A 66 KHEEPQNG-EEMLLQELWSVADEDE 89 (104)
T ss_dssp TCCCCCSH-HHHHHHHHHHHCCHHH
T ss_pred HcCCCCCH-HHHHHHHHHHhCCHHH
Confidence 48899998 4789999999996654
No 57
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=45.15 E-value=3.5e+02 Score=29.84 Aligned_cols=95 Identities=13% Similarity=0.121 Sum_probs=66.0
Q ss_pred HHHHHHhhcCCCCCCchHHHHHHHHHHhhhhhcCchh-hhHHhhhcchhhhhhhccc--CChHHHHhHHHHHHHHhccCC
Q psy1379 337 IKTVADHVNNPNPVPEKEIVQASLSILESIALNSVGK-FSQVENHLTLTNLVMHLQN--QSPIIQQNAIALINALFIKAE 413 (446)
Q Consensus 337 ikki~~~vn~~~~~~d~~il~~~l~iLE~~vl~s~~~-~~~v~~Ev~l~~l~~~lq~--~~~~~~~~a~al~nal~~~a~ 413 (446)
++-++.+++. -|..+...|.+.|=++.-.++.- ...++++=-++.++..++. .++.+|.+++.++..|..-++
T Consensus 656 L~lLV~Ll~s----~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~~ 731 (778)
T 3opb_A 656 FNILVKLLQL----SDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVIP 731 (778)
T ss_dssp HHHHHHGGGC----SCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHcC----CCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhhc
Confidence 4456677744 37788888888888876555432 3444444457788888888 899999999999999997555
Q ss_pred c-hhHHHhhHhhhhhhhHHHHHh
Q psy1379 414 P-SKRKVISATMCSKQVRNAILT 435 (446)
Q Consensus 414 ~-~~r~~~~~~l~~~~~r~~i~~ 435 (446)
+ ...+.+......+.++.+..+
T Consensus 732 ~~~~~~~~~~~~~~~~l~~~l~~ 754 (778)
T 3opb_A 732 DNGTNEVYPLLQENQKLKDALNM 754 (778)
T ss_dssp STTTTSCCHHHHSCHHHHHHHHH
T ss_pred cCCChHHHHHHhcChHHHHHHHH
Confidence 3 333555555546666666655
No 58
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=44.71 E-value=36 Score=31.83 Aligned_cols=103 Identities=8% Similarity=0.019 Sum_probs=69.9
Q ss_pred hHHHHHHHHHhcCC-cccccCchHHHHHHHHhhcCCCCCCCchhhhHHHHHHHHHhhCCCCCccchhhhhcccchhHHhh
Q psy1379 4 HCLLSFVELMDHGI-VSWNILETVFIKTVADHVNNPNPVPEKEIVQASLSILESIALNSVGKFSQFSQVENHLTLTNLVM 82 (446)
Q Consensus 4 y~L~a~~~Lme~~~-~~W~~l~~~fI~ki~~~v~~~~~~~~~~i~~~alsIL~~~V~~s~~~y~gf~~v~~~v~~~~lv~ 82 (446)
.+..++..|-..+. ..+.......|...+.++.+. +..+.+.|...|.++...++..- ..|.+.=.++.||+
T Consensus 29 ~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~----~~~vq~~Aa~aL~nLa~~~~~nk---~~I~~~GaI~~Lv~ 101 (233)
T 3tt9_A 29 AAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQ----NEDVQRAVCGALRNLVFEDNDNK---LEVAELNGVPRLLQ 101 (233)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCC----CHHHHHHHHHHHHHHHTTCHHHH---HHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCC----CHHHHHHHHHHHHHHHhCCHHHH---HHHHHcCCHHHHHH
Confidence 45556666664432 223345566788889998764 68899999999999977554322 45555556899999
Q ss_pred hcc-CCChHHHHhHHHHHHHHhhccCChhhHHHH
Q psy1379 83 HLQ-NQSPIIQQNAIALINALFIKAEPSKRKVIS 115 (446)
Q Consensus 83 ~L~-~~d~~iq~nalaLiNaL~~~a~~~~~~~~~ 115 (446)
.|. +.+..+|.+|.+.+=.|=. .+.-+..++
T Consensus 102 lL~~~~~~~~~e~a~~aL~nLS~--~~~~k~~i~ 133 (233)
T 3tt9_A 102 VLKQTRDLETKKQITGLLWNLSS--NDKLKNLMI 133 (233)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHT--SGGGHHHHH
T ss_pred HHccCCCHHHHHHHHHHHHHHHc--ChhhHHHHH
Confidence 998 4799999999866666632 233444444
No 59
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=44.53 E-value=47 Score=36.80 Aligned_cols=108 Identities=15% Similarity=0.193 Sum_probs=73.2
Q ss_pred HHHHHHhhcCCCCCCCchhhhHHHHHHHHHhhCCCCCccchhhh-hcccchhHHhhhccC--CChHHHHhHHHHHHHHhh
Q psy1379 28 IKTVADHVNNPNPVPEKEIVQASLSILESIALNSVGKFSQFSQV-ENHLTLTNLVMHLQN--QSPIIQQNAIALINALFI 104 (446)
Q Consensus 28 I~ki~~~v~~~~~~~~~~i~~~alsIL~~~V~~s~~~y~gf~~v-~~~v~~~~lv~~L~~--~d~~iq~nalaLiNaL~~ 104 (446)
++-.+.++.. .+..+.+.|..+|..+-..++..- +.+ ...=-++.++..++. .|++++.+++.++..|..
T Consensus 656 L~lLV~Ll~s----~D~~~r~AAagALAnLts~~~~ia---~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 656 FNILVKLLQL----SDVESQRAVAAIFANIATTIPLIA---KELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFE 728 (778)
T ss_dssp HHHHHHGGGC----SCHHHHHHHHHHHHHHHHHCHHHH---HHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcC----CCHHHHHHHHHHHHHhcCCChHHH---HHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 5567777755 478888888888887744443211 222 222236788888888 899999999999999998
Q ss_pred ccCCh-hhHHHHHHhhhhhhHHHHHHhhhcCCCCCCchhhhh
Q psy1379 105 KAEPS-KRKVISATMCSKQVRNAILTSVLQPSGGQVGAEMAH 145 (446)
Q Consensus 105 ~a~~~-~~~~~~~~L~~~~~r~~v~~~ii~~~~~~~~~e~ah 145 (446)
-++++ ....+.+..+....+.++.+ +++ ++ ..++|.+.
T Consensus 729 ~~~~~~~~~~~~~~~~~~~l~~~l~~-~lk-~~-~~~~e~~~ 767 (778)
T 3opb_A 729 VIPDNGTNEVYPLLQENQKLKDALNM-SLK-RG-DSGPEFSA 767 (778)
T ss_dssp TCCSTTTTSCCHHHHSCHHHHHHHHH-HHS-SS-SSCSSTTS
T ss_pred hhccCCChHHHHHHhcChHHHHHHHH-HHh-CC-CchHHHHH
Confidence 66543 33455555557778888877 775 44 45666654
No 60
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=43.94 E-value=48 Score=29.23 Aligned_cols=59 Identities=15% Similarity=0.138 Sum_probs=42.0
Q ss_pred chHHHHHHHHHHhhhhhcCchhhh-HHhhhcchhhhhhhccc-CChHHHHhHHHHHHHHhc
Q psy1379 352 EKEIVQASLSILESIALNSVGKFS-QVENHLTLTNLVMHLQN-QSPIIQQNAIALINALFI 410 (446)
Q Consensus 352 d~~il~~~l~iLE~~vl~s~~~~~-~v~~Ev~l~~l~~~lq~-~~~~~~~~a~al~nal~~ 410 (446)
++.+.-+||.+||..|.|--..|. +|...==+++|+..+.. .++.++.+.+.||.+.-.
T Consensus 65 n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~ 125 (163)
T 1x5b_A 65 VPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSE 125 (163)
T ss_dssp SHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence 567888999999999999533333 45433224566665554 788999999999987543
No 61
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=43.65 E-value=53 Score=29.23 Aligned_cols=59 Identities=19% Similarity=0.247 Sum_probs=42.2
Q ss_pred chHHHHHHHHHHhhhhhcCchhhh-HHhhhcchhhhhhhcc------cCChHHHHhHHHHHHHHhc
Q psy1379 352 EKEIVQASLSILESIALNSVGKFS-QVENHLTLTNLVMHLQ------NQSPIIQQNAIALINALFI 410 (446)
Q Consensus 352 d~~il~~~l~iLE~~vl~s~~~~~-~v~~Ev~l~~l~~~lq------~~~~~~~~~a~al~nal~~ 410 (446)
++.+.-.||.+||..|.|--..|. +|...==+++|+..+. ..++.++.+.+.||.+.-.
T Consensus 63 n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 128 (171)
T 1juq_A 63 QEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM 128 (171)
T ss_dssp SHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 678999999999999999632332 4433322666776664 3578999999999987543
No 62
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=41.69 E-value=48 Score=28.40 Aligned_cols=58 Identities=16% Similarity=0.163 Sum_probs=42.4
Q ss_pred chHHHHHHHHHHhhhhhcCchhhh-HHhhhcchhhhhhhcccCChHHHHhHHHHHHHHh
Q psy1379 352 EKEIVQASLSILESIALNSVGKFS-QVENHLTLTNLVMHLQNQSPIIQQNAIALINALF 409 (446)
Q Consensus 352 d~~il~~~l~iLE~~vl~s~~~~~-~v~~Ev~l~~l~~~lq~~~~~~~~~a~al~nal~ 409 (446)
++.+.-+||.+||..|-|--..+. .|...==++++...+...++.++.+.+.||.+.-
T Consensus 55 n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~ 113 (140)
T 3ldz_A 55 DPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWT 113 (140)
T ss_dssp SHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 577899999999999998643333 3422223566666666789999999999998754
No 63
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=41.36 E-value=43 Score=34.47 Aligned_cols=71 Identities=15% Similarity=0.202 Sum_probs=52.3
Q ss_pred chHHHHHHHHHHhhhhhcCchhhhHHhhhcc-hhhhhhhcccCChHHHHhHHHHHHHHhccCCchhHHHhhH
Q psy1379 352 EKEIVQASLSILESIALNSVGKFSQVENHLT-LTNLVMHLQNQSPIIQQNAIALINALFIKAEPSKRKVISA 422 (446)
Q Consensus 352 d~~il~~~l~iLE~~vl~s~~~~~~v~~Ev~-l~~l~~~lq~~~~~~~~~a~al~nal~~~a~~~~r~~~~~ 422 (446)
+..+...++..|-++..+++.....|..+-. ++.|+..|...++.+|.+|...|--|-.+.++..|..+.+
T Consensus 213 ~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~ 284 (458)
T 3nmz_A 213 SITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLRE 284 (458)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 4567888999999999888755555643323 8899999999999999999887766654444555665543
No 64
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=40.13 E-value=34 Score=35.22 Aligned_cols=73 Identities=12% Similarity=0.160 Sum_probs=54.0
Q ss_pred HHHHHHHhhcCCCCCCCchhhhHHHHHHHHHhhCCCCCccchhhhhcccchhHHhhhccCCChHHHHhHHHHHHHHhhcc
Q psy1379 27 FIKTVADHVNNPNPVPEKEIVQASLSILESIALNSVGKFSQFSQVENHLTLTNLVMHLQNQSPIIQQNAIALINALFIKA 106 (446)
Q Consensus 27 fI~ki~~~v~~~~~~~~~~i~~~alsIL~~~V~~s~~~y~gf~~v~~~v~~~~lv~~L~~~d~~iq~nalaLiNaL~~~a 106 (446)
.|..++.++.+ .+..+.+.|...|.++...++..- +.+.++=.++.|+..|++.+..++.+|...+..|..+-
T Consensus 380 ~i~~Lv~LL~~----~~~~v~~~A~~aL~nLa~~~~~~~---~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 380 CLQTLLQHLKS----HSLTIVSNACGTLWNLSARNPKDQ---EALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 452 (458)
T ss_dssp HHHHHHHHSSC----SCHHHHHHHHHHHHHHHSSCHHHH---HHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred cHHHHHHHHcC----CChHHHHHHHHHHHHHHcCCHHHH---HHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 34556666655 357788888888888876554322 44544445889999999999999999999999988764
No 65
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=39.76 E-value=57 Score=34.01 Aligned_cols=85 Identities=13% Similarity=0.184 Sum_probs=57.5
Q ss_pred HHHHHHHHHhcCCcccccCc-hHHHHHHHHhhcCCCCCCCchhhhHHHHHHHHHhhCCCCCccchhhhhcccchhHHhhh
Q psy1379 5 CLLSFVELMDHGIVSWNILE-TVFIKTVADHVNNPNPVPEKEIVQASLSILESIALNSVGKFSQFSQVENHLTLTNLVMH 83 (446)
Q Consensus 5 ~L~a~~~Lme~~~~~W~~l~-~~fI~ki~~~v~~~~~~~~~~i~~~alsIL~~~V~~s~~~y~gf~~v~~~v~~~~lv~~ 83 (446)
|..|+..+.+++. +.+. ..|+.++..+++. +++.|...|+..|..+..+++..| -+... .-.+..|++.
T Consensus 141 A~~al~~i~~~~p---~~~~~~~~~~~l~~lL~d----~d~~V~~~A~~aL~~i~~~~~~~~-~~~l~--~~~~~~Ll~~ 210 (591)
T 2vgl_B 141 AAVCVAKLHDINA---QMVEDQGFLDSLRDLIAD----SNPMVVANAVAALSEISESHPNSN-LLDLN--PQNINKLLTA 210 (591)
T ss_dssp HHHHHHHHHHSSC---CCHHHHHHHHHHHHTTSC----SCHHHHHHHHHHHHHHTTSCCSCC-SCCCH--HHHHHHHHHH
T ss_pred HHHHHHHHHhhCh---hhcccccHHHHHHHHhCC----CChhHHHHHHHHHHHHHhhCCCcc-chhcc--HHHHHHHHHc
Confidence 4556666666543 3333 4799999999986 478999999999999988887553 11211 1125667777
Q ss_pred ccCCChHHHHhHHHHH
Q psy1379 84 LQNQSPIIQQNAIALI 99 (446)
Q Consensus 84 L~~~d~~iq~nalaLi 99 (446)
+...|+-.|...+-++
T Consensus 211 l~~~~~~~q~~il~~l 226 (591)
T 2vgl_B 211 LNECTEWGQIFILDCL 226 (591)
T ss_dssp HHHCCHHHHHHHHHHH
T ss_pred CCCCCchHHHHHHHHH
Confidence 7778888877655544
No 66
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=39.62 E-value=54 Score=35.55 Aligned_cols=169 Identities=14% Similarity=0.156 Sum_probs=95.4
Q ss_pred HHHHHHhcCCcccccCchHHHHHHHHhhcCCCCCCCchhhhHHHHHHHHHhhCCCCCcc-----------ch----hhhh
Q psy1379 8 SFVELMDHGIVSWNILETVFIKTVADHVNNPNPVPEKEIVQASLSILESIALNSVGKFS-----------QF----SQVE 72 (446)
Q Consensus 8 a~~~Lme~~~~~W~~l~~~fI~ki~~~v~~~~~~~~~~i~~~alsIL~~~V~~s~~~y~-----------gf----~~v~ 72 (446)
|+..|-+...-.++.+...=+..+++.+... ..|+.+++.+|.+|-.+........+ |. ..++
T Consensus 42 Av~~Lk~~sk~y~~~Vg~~~l~~li~~L~~d--~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~ 119 (651)
T 3grl_A 42 AVRALKSLSKKYRLEVGIQAMEHLIHVLQTD--RSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIK 119 (651)
T ss_dssp HHHHHHHTTTTTTTHHHHHTHHHHHHHHHSC--TTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHhhhhhHHHHHHHHhcc--cccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHc
Confidence 4555555554233444444455666666665 47899999999999877665432110 11 0112
Q ss_pred cccchhHHhhhccCCChHHHHhHHHHHHHHhhccCChhhHH----------HHHHhhh--hhhHH---HHHHhhhcCCCC
Q psy1379 73 NHLTLTNLVMHLQNQSPIIQQNAIALINALFIKAEPSKRKV----------ISATMCS--KQVRN---AILTSVLQPSGG 137 (446)
Q Consensus 73 ~~v~~~~lv~~L~~~d~~iq~nalaLiNaL~~~a~~~~~~~----------~~~~L~~--~~~r~---~v~~~ii~~~~~ 137 (446)
++=.+..|+..|++.|..+..||+.|+-+|...-+..-|+. +++-|.+ -.+|+ .++.+|.+ ++.
T Consensus 120 ~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~-~n~ 198 (651)
T 3grl_A 120 QQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTR-SNG 198 (651)
T ss_dssp STHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHT-TCH
T ss_pred CCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhc-CCH
Confidence 22247889999999999999999999999998766544443 3444543 23444 22233333 222
Q ss_pred CCchhhhhcchHHH---HHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhccc
Q psy1379 138 QVGAEMAHQLYVLQ---TLTLGLLEQRMNTKMDPQDQDAHDKIKELRRVAFEI 187 (446)
Q Consensus 138 ~~~~e~ah~L~~~Q---~l~l~~Le~r~~~~~d~~~~~h~~~L~~Lw~~a~p~ 187 (446)
. .+.|..|. ...++.++..-. .| .-.-+++-|.-|+.++..+
T Consensus 199 ~-----iQklVAFEnaFe~Lf~Ii~~Eg~--~~-Ggivv~DCL~ll~nLLr~N 243 (651)
T 3grl_A 199 A-----IQKIVAFENAFERLLDIITEEGN--SD-GGIVVEDCLILLQNLLKNN 243 (651)
T ss_dssp H-----HHHHHHHTTHHHHHHHHHHHHTG--GG-SHHHHHHHHHHHHHHHTTC
T ss_pred H-----HHHHHHHhccHHHHHHHHHhcCC--Cc-cchhHHHHHHHHHHHHhcC
Confidence 1 23344432 112455544332 11 2245677777777777654
No 67
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=37.76 E-value=41 Score=33.77 Aligned_cols=53 Identities=23% Similarity=0.266 Sum_probs=39.1
Q ss_pred cchhhhhhhccc-CChHHHHhHHHHHHHHhccCCc-hhHHHhhHhhhhhhhHHHH
Q psy1379 381 LTLTNLVMHLQN-QSPIIQQNAIALINALFIKAEP-SKRKVISATMCSKQVRNAI 433 (446)
Q Consensus 381 v~l~~l~~~lq~-~~~~~~~~a~al~nal~~~a~~-~~r~~~~~~l~~~~~r~~i 433 (446)
..++.++.++.+ .+...++.+|.|||++...+++ ..|-.+-..+..-++-..+
T Consensus 154 ~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~~il 208 (386)
T 2bnx_A 154 ERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVL 208 (386)
T ss_dssp CTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHH
T ss_pred hhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHH
Confidence 457778888874 6778999999999999999887 5565555555555554443
No 68
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=37.15 E-value=46 Score=30.91 Aligned_cols=59 Identities=20% Similarity=0.236 Sum_probs=40.9
Q ss_pred chHHHHHHHHHHhhhhhcCchh-hhHHhhhcchhhhhhhccc-CChHHHHhHHHHHHHHhc
Q psy1379 352 EKEIVQASLSILESIALNSVGK-FSQVENHLTLTNLVMHLQN-QSPIIQQNAIALINALFI 410 (446)
Q Consensus 352 d~~il~~~l~iLE~~vl~s~~~-~~~v~~Ev~l~~l~~~lq~-~~~~~~~~a~al~nal~~ 410 (446)
++.+.-+||.+||..|.|.-.. ..+|..+==++.|...+.. .++.++.+.+.||.+.-.
T Consensus 58 n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 118 (226)
T 3zyq_A 58 NPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAH 118 (226)
T ss_dssp SHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 6789999999999999996432 3333322223455544443 678999999999988643
No 69
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=36.60 E-value=69 Score=30.75 Aligned_cols=97 Identities=13% Similarity=0.199 Sum_probs=66.6
Q ss_pred CcccccC--------chHHHHHHHHhhcCCCCCCCchhhhHHHHHHHHHhhCCCCCccchhhhhcccchhHHhhhccCCC
Q psy1379 17 IVSWNIL--------ETVFIKTVADHVNNPNPVPEKEIVQASLSILESIALNSVGKFSQFSQVENHLTLTNLVMHLQNQS 88 (446)
Q Consensus 17 ~~~W~~l--------~~~fI~ki~~~v~~~~~~~~~~i~~~alsIL~~~V~~s~~~y~gf~~v~~~v~~~~lv~~L~~~d 88 (446)
.-+|+.- +.+-+.-+.+++.. .|..+.-++|.+||.+...-+..- --..+++ -++.+|..+.+.|
T Consensus 16 L~sWkiK~a~ela~~~e~~l~~L~~LL~d----kD~~vk~raL~~LeellK~~~~~l-~~~~~e~--~Ld~iI~llk~~d 88 (265)
T 3b2a_A 16 VLSWQILDAVSLALEDKRALFLILELAGE----DDETTRLRAFVALGEILKRADSDL-RMMVLER--HLDVFINALSQEN 88 (265)
T ss_dssp HHTTCHHHHHHHHHHCHHHHHHHHHHTTS----SCHHHHHHHHHHHHHHHHHSCHHH-HHHHHHH--HHHHHHHTCCSTT
T ss_pred HHHhhHHHHHHHHHhchhHHHHHHHHHhc----cchHHHHHHHHHHHHHHHhccccc-cHHHHHH--HHHHHHHHHhccc
Confidence 3478864 23445556677755 478888899999999877643211 0011111 3789999999999
Q ss_pred hHHHHhHHHHHHHHhhccCCh--hhHHHHHHhhh
Q psy1379 89 PIIQQNAIALINALFIKAEPS--KRKVISATMCS 120 (446)
Q Consensus 89 ~~iq~nalaLiNaL~~~a~~~--~~~~~~~~L~~ 120 (446)
..+..+|+=.||.|+-+-+-. ...+.+++|.+
T Consensus 89 Ekval~A~r~L~~LLe~vpL~~~~y~Kl~~aL~d 122 (265)
T 3b2a_A 89 EKVTIKALRALGYLVKDVPMGSKTFLKAAKTLVS 122 (265)
T ss_dssp HHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 999999999999999988743 34555555443
No 70
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=35.65 E-value=54 Score=30.05 Aligned_cols=58 Identities=19% Similarity=0.159 Sum_probs=42.2
Q ss_pred chHHHHHHHHHHhhhhhcCchhh-hHHhhhcchhhhhhhccc-CChHHHHhHHHHHHHHh
Q psy1379 352 EKEIVQASLSILESIALNSVGKF-SQVENHLTLTNLVMHLQN-QSPIIQQNAIALINALF 409 (446)
Q Consensus 352 d~~il~~~l~iLE~~vl~s~~~~-~~v~~Ev~l~~l~~~lq~-~~~~~~~~a~al~nal~ 409 (446)
++.+.-+||.+||..|.|.-..+ ..|..+=-+++|+..+.+ .++.++.+++.||.+.-
T Consensus 55 n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 114 (220)
T 1dvp_A 55 NPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWA 114 (220)
T ss_dssp SHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 67899999999999999974333 444433346666666554 67889999999987654
No 71
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=34.76 E-value=3.4e+02 Score=28.63 Aligned_cols=99 Identities=10% Similarity=0.071 Sum_probs=58.0
Q ss_pred hHHHHHHHHHhc-CCcccccCchHHHHHHHHhhcCCCCCCCchhhhHHHHHHHHHhhCCCCCccchhhhhcccchhHHhh
Q psy1379 4 HCLLSFVELMDH-GIVSWNILETVFIKTVADHVNNPNPVPEKEIVQASLSILESIALNSVGKFSQFSQVENHLTLTNLVM 82 (446)
Q Consensus 4 y~L~a~~~Lme~-~~~~W~~l~~~fI~ki~~~v~~~~~~~~~~i~~~alsIL~~~V~~s~~~y~gf~~v~~~v~~~~lv~ 82 (446)
+++.+|..+... |.-.....-+.++..+...+.... ....+...++..+..++..... .|....++ -++.|+.
T Consensus 583 ~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~--~~~~v~~~a~~~l~~l~~~~~~---~~~~~~~~-~~~~l~~ 656 (876)
T 1qgr_A 583 LLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTA--GSGGVQEDALMAVSTLVEVLGG---EFLKYMEA-FKPFLGI 656 (876)
T ss_dssp HHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHGG---GGGGGHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhcc--CCCCccHHHHHHHHHHHHHHHh---hHHHHHHH-HHHHHHH
Confidence 344555555543 201222334566777777776641 1135677788888888765432 22332222 2466777
Q ss_pred hccCC-ChHHHHhHHHHHHHHhhccCC
Q psy1379 83 HLQNQ-SPIIQQNAIALINALFIKAEP 108 (446)
Q Consensus 83 ~L~~~-d~~iq~nalaLiNaL~~~a~~ 108 (446)
.|+.. +..++..|+.++..|.+...+
T Consensus 657 ~l~~~~~~~vr~~a~~~l~~l~~~~~~ 683 (876)
T 1qgr_A 657 GLKNYAEYQVCLAAVGLVGDLCRALQS 683 (876)
T ss_dssp HHHHCTTHHHHHHHHHHHHHHHHHHGG
T ss_pred HHcCcchHHHHHHHHHHHHHHHHHHHH
Confidence 77776 889999999999999876653
No 72
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=34.63 E-value=1.2e+02 Score=27.92 Aligned_cols=97 Identities=11% Similarity=0.099 Sum_probs=64.9
Q ss_pred HHHHHHH-HHh-cCCcccccCc-hHHHHHHHHhhcCCCCCCCchhhhHHHHHHHHHhhCCC-CCccchhhhhcccchhHH
Q psy1379 5 CLLSFVE-LMD-HGIVSWNILE-TVFIKTVADHVNNPNPVPEKEIVQASLSILESIALNSV-GKFSQFSQVENHLTLTNL 80 (446)
Q Consensus 5 ~L~a~~~-Lme-~~~~~W~~l~-~~fI~ki~~~v~~~~~~~~~~i~~~alsIL~~~V~~s~-~~y~gf~~v~~~v~~~~l 80 (446)
+|.++.. +++ +..+-|..-+ .+++.-+...+... .++.|...|+..|..+...-. .. |..-+-..-++.+
T Consensus 36 al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D---~n~~v~~~A~~al~~la~~l~~~~---f~~~y~~~llp~l 109 (249)
T 2qk1_A 36 ALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKD---ANIQAVALAAQSVELICDKLKTPG---FSKDYVSLVFTPL 109 (249)
T ss_dssp HHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHHHHHCTTT---SCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccC---CCHHHHHHHHHHHHHHHHhccccc---ccHHHHHHHHHHH
Confidence 4566666 664 2232332222 57777788888433 478888999999999875332 22 2311122247889
Q ss_pred hhhccCCChHHHHhHHHHHHHHhhccC
Q psy1379 81 VMHLQNQSPIIQQNAIALINALFIKAE 107 (446)
Q Consensus 81 v~~L~~~d~~iq~nalaLiNaL~~~a~ 107 (446)
+.++......++..+-+.+.+++...+
T Consensus 110 l~~l~dkk~~V~~aa~~al~~i~~~~~ 136 (249)
T 2qk1_A 110 LDRTKEKKPSVIEAIRKALLTICKYYD 136 (249)
T ss_dssp HHGGGCCCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHcc
Confidence 999999999999999999999999874
No 73
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=31.40 E-value=4.8e+02 Score=27.37 Aligned_cols=97 Identities=10% Similarity=0.092 Sum_probs=62.1
Q ss_pred hHHHHHHHHHhc-CCcccccCchHHHHHHHHhhcCCCCCCCchhhhHHHHHHHHHhhCCCCCccchhhhhcccchhHHhh
Q psy1379 4 HCLLSFVELMDH-GIVSWNILETVFIKTVADHVNNPNPVPEKEIVQASLSILESIALNSVGKFSQFSQVENHLTLTNLVM 82 (446)
Q Consensus 4 y~L~a~~~Lme~-~~~~W~~l~~~fI~ki~~~v~~~~~~~~~~i~~~alsIL~~~V~~s~~~y~gf~~v~~~v~~~~lv~ 82 (446)
.++.++..+.+. |. .+....+.++..+...+.... .+ .+...++..+..++...... |....+. -++.|+.
T Consensus 575 ~~~~~l~~l~~~~~~-~~~~~~~~l~~~l~~~l~~~~--~~-~v~~~~~~~l~~l~~~~~~~---~~~~l~~-i~~~l~~ 646 (861)
T 2bpt_A 575 NILTVLAAVIRKSPS-SVEPVADMLMGLFFRLLEKKD--SA-FIEDDVFYAISALAASLGKG---FEKYLET-FSPYLLK 646 (861)
T ss_dssp HHHHHHHHHHHHCGG-GTGGGHHHHHHHHHHHHHSTT--GG-GTHHHHHHHHHHHHHHHGGG---GHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHccCC--CC-cHHHHHHHHHHHHHHHHhhh---HHHHHHH-HHHHHHH
Confidence 455666666654 32 344445678888888887751 22 67777887777776554322 2221111 2456677
Q ss_pred hccCCChHHHHhHHHHHHHHhhccCC
Q psy1379 83 HLQNQSPIIQQNAIALINALFIKAEP 108 (446)
Q Consensus 83 ~L~~~d~~iq~nalaLiNaL~~~a~~ 108 (446)
.|...+..++..++.++..+.+...+
T Consensus 647 ~l~~~~~~vr~~a~~~l~~l~~~~~~ 672 (861)
T 2bpt_A 647 ALNQVDSPVSITAVGFIADISNSLEE 672 (861)
T ss_dssp HHHCTTSHHHHHHHHHHHHHHHHTGG
T ss_pred HhccccHHHHHHHHHHHHHHHHHhch
Confidence 77778889999999999998877653
No 74
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=31.08 E-value=1e+02 Score=26.76 Aligned_cols=70 Identities=16% Similarity=0.289 Sum_probs=47.8
Q ss_pred HHHHHHhhcCCCCCCchHHHHHHHHHHhhhhhcCchhh-hHHhhhcchhhhhhhcc------cCChHHHHhHHHHHHHHh
Q psy1379 337 IKTVADHVNNPNPVPEKEIVQASLSILESIALNSVGKF-SQVENHLTLTNLVMHLQ------NQSPIIQQNAIALINALF 409 (446)
Q Consensus 337 ikki~~~vn~~~~~~d~~il~~~l~iLE~~vl~s~~~~-~~v~~Ev~l~~l~~~lq------~~~~~~~~~a~al~nal~ 409 (446)
++-|..-++.+ ++.+.-.||.+||..|.|--..| ..|..+==+++|+..+. ..++.++.+.+.||.+.-
T Consensus 50 ~ral~krl~~~----n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 125 (149)
T 3g2s_A 50 TRLLAHKIQSP----QEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWT 125 (149)
T ss_dssp HHHHHHHHTCS----SHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCC----CHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHH
Confidence 33344445443 67899999999999999974443 33433323666776664 367899999999998754
Q ss_pred c
Q psy1379 410 I 410 (446)
Q Consensus 410 ~ 410 (446)
.
T Consensus 126 ~ 126 (149)
T 3g2s_A 126 V 126 (149)
T ss_dssp H
T ss_pred H
Confidence 3
No 75
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=29.91 E-value=90 Score=33.81 Aligned_cols=92 Identities=10% Similarity=0.097 Sum_probs=68.8
Q ss_pred HHHHHHHhhcCCCCCCCchhhhHHHHHHHHHhhCCCCCccchhhhhcccchhHHhhhccCCChHHHHhHHHHHHHHhhcc
Q psy1379 27 FIKTVADHVNNPNPVPEKEIVQASLSILESIALNSVGKFSQFSQVENHLTLTNLVMHLQNQSPIIQQNAIALINALFIKA 106 (446)
Q Consensus 27 fI~ki~~~v~~~~~~~~~~i~~~alsIL~~~V~~s~~~y~gf~~v~~~v~~~~lv~~L~~~d~~iq~nalaLiNaL~~~a 106 (446)
.|.-+++++.. .+..+--.++..|+.++.+.+..+ .-.++.....+..||..|.+....++-.|+.||-+|-++.
T Consensus 123 ~i~~Ll~lL~~----~df~vR~~alqlL~~L~~~r~~~~-Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n 197 (651)
T 3grl_A 123 NVTLLLSLLEE----FDFHVRWPGVKLLTSLLKQLGPQV-QQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSN 197 (651)
T ss_dssp HHHHHHHHTTC----CCHHHHHHHHHHHHHHHHHSHHHH-HHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHhcC----ccHHHHHHHHHHHHHHHhcCcHHH-HHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCC
Confidence 34556777765 488898899999999999987644 2223345567999999999999999999999999999876
Q ss_pred CCh--------hhHHHHHHhhhhhh
Q psy1379 107 EPS--------KRKVISATMCSKQV 123 (446)
Q Consensus 107 ~~~--------~~~~~~~~L~~~~~ 123 (446)
.+- -...+++.++..|.
T Consensus 198 ~~iQklVAFEnaFe~Lf~Ii~~Eg~ 222 (651)
T 3grl_A 198 GAIQKIVAFENAFERLLDIITEEGN 222 (651)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHTG
T ss_pred HHHHHHHHHhccHHHHHHHHHhcCC
Confidence 532 24555666666654
No 76
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=27.11 E-value=3.3e+02 Score=24.08 Aligned_cols=76 Identities=12% Similarity=0.305 Sum_probs=56.7
Q ss_pred ccccchHHHHHHHHHhhcCCCCCCchHHHHHHHHHHhhhhhcCchhhhHHhhhcchhhhhhhcccCChHHHHhHHHHHHH
Q psy1379 328 SWNILETVFIKTVADHVNNPNPVPEKEIVQASLSILESIALNSVGKFSQVENHLTLTNLVMHLQNQSPIIQQNAIALINA 407 (446)
Q Consensus 328 swd~l~~~Fikki~~~vn~~~~~~d~~il~~~l~iLE~~vl~s~~~~~~v~~Ev~l~~l~~~lq~~~~~~~~~a~al~na 407 (446)
.|..+-..++..+...+..+ +..+-+.+..-|..++.+.+ +.. -++.+...|+..++.++..++..|..
T Consensus 91 ~~~~~~~~ilp~ll~~l~d~----~~~vr~~a~~aL~~~~~~~~--~~~-----ll~~l~~~l~~~~~~vr~~~l~~l~~ 159 (242)
T 2qk2_A 91 RFSNYASACVPSLLEKFKEK----KPNVVTALREAIDAIYASTS--LEA-----QQESIVESLSNKNPSVKSETALFIAR 159 (242)
T ss_dssp GGHHHHHHHHHHHHHGGGCC----CHHHHHHHHHHHHHHHTTSC--HHH-----HHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCC----CHHHHHHHHHHHHHHHHcCC--HHH-----HHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 55666666777777777654 45788888888888877654 211 35678888888999999999999999
Q ss_pred HhccCCc
Q psy1379 408 LFIKAEP 414 (446)
Q Consensus 408 l~~~a~~ 414 (446)
++.+..+
T Consensus 160 ~l~~~~~ 166 (242)
T 2qk2_A 160 ALTRTQP 166 (242)
T ss_dssp HHTTCCG
T ss_pred HHHHcCC
Confidence 8877653
No 77
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=25.85 E-value=1.1e+02 Score=29.35 Aligned_cols=120 Identities=15% Similarity=0.363 Sum_probs=77.0
Q ss_pred cccCc--hHHHHHHHHhhcCCCCCCC-----chhhhHHHHHHHHHhhCCCCCccchhhhhcccch--hHHhhhccC--CC
Q psy1379 20 WNILE--TVFIKTVADHVNNPNPVPE-----KEIVQASLSILESIALNSVGKFSQFSQVENHLTL--TNLVMHLQN--QS 88 (446)
Q Consensus 20 W~~l~--~~fI~ki~~~v~~~~~~~~-----~~i~~~alsIL~~~V~~s~~~y~gf~~v~~~v~~--~~lv~~L~~--~d 88 (446)
|..+. ..++..|++.--.-+ ++. .|-+=.||++|-++.+|+.++- ..+...|++ -...+--.. .-
T Consensus 40 W~S~Gtia~LLQEIisiYp~ls-pp~Lt~~~SnRVcnaLaLlQcvAshpetr~---~Fl~a~iplyLyPfL~t~sk~r~f 115 (268)
T 2fv2_A 40 WHSFGTIAALLQEIVNIYPSIN-PPTLTAHQSNRVCNALALLQCVASHPETRS---AFLAAHIPLFLYPFLHTVSKTRPF 115 (268)
T ss_dssp HHSTTHHHHHHHHHHHTGGGBT-TBCCCHHHHHHHHHHHHHHHHHHHCTTTHH---HHHHTTGGGGTHHHHHCCCCSHHH
T ss_pred HhccCHHHHHHHHHHHHcccCC-CcccCHHHHhHHHHHHHHHHHHHcCcchhh---HHHHccchHHhhhhhccccCCCcc
Confidence 77664 456666666543311 111 2344559999999999998876 668888873 222222222 34
Q ss_pred hHHHHhHHHHHHHHhhccCChhhHHHHHHhhhhhhHHHHHHhhhcCCCCCCchhhhhcc--hHHHHH
Q psy1379 89 PIIQQNAIALINALFIKAEPSKRKVISATMCSKQVRNAILTSVLQPSGGQVGAEMAHQL--YVLQTL 153 (446)
Q Consensus 89 ~~iq~nalaLiNaL~~~a~~~~~~~~~~~L~~~~~r~~v~~~ii~~~~~~~~~e~ah~L--~~~Q~l 153 (446)
+-+...+|+.|-||. |.++ ++.+..|-+..+.--.++ +|. .|.|+..-+ +.+|..
T Consensus 116 E~LRLtsLGVIgaLv-K~dd---~eVi~fLL~tEiiplCLr-ime-----~GselSKtvAtfIlqKI 172 (268)
T 2fv2_A 116 EYLRLTSLGVIGALV-KTDE---QEVINFLLTTEIIPLCLR-IME-----SGSELSKTVATFILQKI 172 (268)
T ss_dssp HHHHHHHHHHHHHHG-GGCC---HHHHHHHHHTTHHHHHHH-HHH-----HSCHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHh-ccCc---HHHHHHHHhhhHHHHHHH-HHh-----hccHHHHHHHHHHHHHH
Confidence 567888999999999 5554 478888888888877777 776 345555433 444544
No 78
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=24.55 E-value=1.9e+02 Score=29.90 Aligned_cols=73 Identities=11% Similarity=0.165 Sum_probs=50.8
Q ss_pred hHHHHHHHHhhcCCCCCCCchhhhHHHHHHHHHhhCCCCCccchhhhhcccchhHHhhhccCCChHHHHhHHHHHHHHhh
Q psy1379 25 TVFIKTVADHVNNPNPVPEKEIVQASLSILESIALNSVGKFSQFSQVENHLTLTNLVMHLQNQSPIIQQNAIALINALFI 104 (446)
Q Consensus 25 ~~fI~ki~~~v~~~~~~~~~~i~~~alsIL~~~V~~s~~~y~gf~~v~~~v~~~~lv~~L~~~d~~iq~nalaLiNaL~~ 104 (446)
+.++..+...+.. +++.|-+.|.--|..+...++. .+..+--++.|...|.+.|+.++.+|+.++..+..
T Consensus 120 ~~l~~~l~~~L~d----~~~~VRk~A~~al~~i~~~~p~------~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~ 189 (591)
T 2vgl_B 120 EYLCEPLRKCLKD----EDPYVRKTAAVCVAKLHDINAQ------MVEDQGFLDSLRDLIADSNPMVVANAVAALSEISE 189 (591)
T ss_dssp HHHHHHHHHHSSC----SCHHHHHHHHHHHHHHHHSSCC------CHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCC----CChHHHHHHHHHHHHHHhhChh------hcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHh
Confidence 3444556666654 4678877777777777766553 23322235778888899999999999999999877
Q ss_pred ccC
Q psy1379 105 KAE 107 (446)
Q Consensus 105 ~a~ 107 (446)
+.+
T Consensus 190 ~~~ 192 (591)
T 2vgl_B 190 SHP 192 (591)
T ss_dssp SCC
T ss_pred hCC
Confidence 654
No 79
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=23.98 E-value=1.5e+02 Score=31.83 Aligned_cols=90 Identities=17% Similarity=0.176 Sum_probs=59.7
Q ss_pred chHHHHHHHHhhcCCCCCCCchhhhHHHHHHHHHhhCCCCCccchhhhhccc---chhHHhhhccCCChHHHHhHHHHHH
Q psy1379 24 ETVFIKTVADHVNNPNPVPEKEIVQASLSILESIALNSVGKFSQFSQVENHL---TLTNLVMHLQNQSPIIQQNAIALIN 100 (446)
Q Consensus 24 ~~~fI~ki~~~v~~~~~~~~~~i~~~alsIL~~~V~~s~~~y~gf~~v~~~v---~~~~lv~~L~~~d~~iq~nalaLiN 100 (446)
.++|......++...+ ..+..|-+.|.-.|++.+... | ..+.++. -.+.|++.|.+.+..++..+-..|-
T Consensus 43 ~p~~~~~l~~il~~~~-~~~~~vR~~a~~~Lkn~i~~~---w---~~~~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~ 115 (852)
T 4fdd_A 43 YPDFNNYLIFVLTKLK-SEDEPTRSLSGLILKNNVKAH---F---QNFPNGVTDFIKSECLNNIGDSSPLIRATVGILIT 115 (852)
T ss_dssp SHHHHHHHHHHHHTCT-TSCHHHHHHHHHHHHHHTTTS---G---GGCCHHHHHHHHHHHHTTTTCSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhccC-CCChHHHHHHHHHHHHHHHHc---c---CCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 4666666666666411 256777777777888777542 2 2222221 1466777788888999988888888
Q ss_pred HHhhccCChhhHHHHHHhhh
Q psy1379 101 ALFIKAEPSKRKVISATMCS 120 (446)
Q Consensus 101 aL~~~a~~~~~~~~~~~L~~ 120 (446)
.+.++.....|++++..|.+
T Consensus 116 ~ia~~~~~~~wp~ll~~L~~ 135 (852)
T 4fdd_A 116 TIASKGELQNWPDLLPKLCS 135 (852)
T ss_dssp HHHHHTTTTTCTTHHHHHHH
T ss_pred HHHHhcCccccHHHHHHHHH
Confidence 88887767788877766643
No 80
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=22.40 E-value=2.5e+02 Score=26.73 Aligned_cols=62 Identities=16% Similarity=0.147 Sum_probs=42.5
Q ss_pred CchhhhHHHHHHHHHhhCCCCCccchhhhhcccch---hHHhhhccCCChHHHHhHHHHHHHHhhccCChhhH
Q psy1379 43 EKEIVQASLSILESIALNSVGKFSQFSQVENHLTL---TNLVMHLQNQSPIIQQNAIALINALFIKAEPSKRK 112 (446)
Q Consensus 43 ~~~i~~~alsIL~~~V~~s~~~y~gf~~v~~~v~~---~~lv~~L~~~d~~iq~nalaLiNaL~~~a~~~~~~ 112 (446)
+..+-..+|..+.+++... |-. +...+ +.+..++..+|..+...|+..+..+++.+++.=|+
T Consensus 180 N~R~R~e~l~~l~~li~~~-----G~~---~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~v~k 244 (266)
T 2of3_A 180 NARQRSECLLVIEYYITNA-----GIS---PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQMWK 244 (266)
T ss_dssp CHHHHHHHHHHHHHHHHHH-----CSG---GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred CHHHHHHHHHHHHHHHHhc-----CCC---ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 3555555666666665542 223 23346 77888888899999999999999988888875443
No 81
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=21.67 E-value=3.1e+02 Score=26.20 Aligned_cols=72 Identities=13% Similarity=0.217 Sum_probs=48.5
Q ss_pred HHHHHHHHhhcCCCCCCCchhhhHHHHHHHHHhhCCCCCccchhhhhcccc--hhHHhhhccCCChHHHHhHHHHHHHHh
Q psy1379 26 VFIKTVADHVNNPNPVPEKEIVQASLSILESIALNSVGKFSQFSQVENHLT--LTNLVMHLQNQSPIIQQNAIALINALF 103 (446)
Q Consensus 26 ~fI~ki~~~v~~~~~~~~~~i~~~alsIL~~~V~~s~~~y~gf~~v~~~v~--~~~lv~~L~~~d~~iq~nalaLiNaL~ 103 (446)
.++..+..++.. ++..+-..|+..|.+++...... .+.+.++ ++.|+..|.+.++.++..|...+-.+.
T Consensus 366 ~~~~~l~~~l~~----~~~~~r~aal~~l~~l~~~~~~~-----~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~ 436 (462)
T 1ibr_B 366 HVLPFIKEHIKN----PDWRYRDAAVMAFGCILEGPEPS-----QLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRIC 436 (462)
T ss_dssp HHHHHHHHHTTC----SSHHHHHHHHHHHHHTSSSSCTT-----TTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC----CChHHHHHHHHHHHHHhcCCcHH-----HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 344444444443 46888888999998887643311 1233333 678889999999999999888887777
Q ss_pred hcc
Q psy1379 104 IKA 106 (446)
Q Consensus 104 ~~a 106 (446)
...
T Consensus 437 ~~~ 439 (462)
T 1ibr_B 437 ELL 439 (462)
T ss_dssp HHG
T ss_pred Hhc
Confidence 654
No 82
>3vld_A DNA mismatch repair protein HSM3; heat repeat, RPT1, chaperone; HET: DNA; 2.05A {Saccharomyces cerevisiae} PDB: 3vle_A* 3vlf_A* 4a3v_A* 4a3t_A*
Probab=21.22 E-value=2e+02 Score=30.15 Aligned_cols=69 Identities=13% Similarity=0.184 Sum_probs=53.8
Q ss_pred hHHHHHHHHHhhcCCC--CCCchHHHHHHHHHHhhhhhcCchhhhHHhhhcchhhhhhhcccCChHHHHhHHHHHH
Q psy1379 333 ETVFIKTVADHVNNPN--PVPEKEIVQASLSILESIALNSVGKFSQVENHLTLTNLVMHLQNQSPIIQQNAIALIN 406 (446)
Q Consensus 333 ~~~Fikki~~~vn~~~--~~~d~~il~~~l~iLE~~vl~s~~~~~~v~~Ev~l~~l~~~lq~~~~~~~~~a~al~n 406 (446)
...++.+|.+.+..+. ...|.+- -+.+|+.++-..+ |+.|-+..|.|+++.-|++.++.+..-|.-.|.
T Consensus 71 ~~~ll~~Ik~iL~~~~~~~~lD~~~---Li~Ll~~il~~~~--Fd~VLevysve~i~~aL~S~~~~l~~~~ckVI~ 141 (500)
T 3vld_A 71 VKPLLATIKRFLTSNVSYDSLNYDY---LLDVVDKLVPMAD--FDDVLEVYSAEDLVKALRSEIDPLKVAACRVIE 141 (500)
T ss_dssp CHHHHHHHHHHHHCSSCCTTCCHHH---HHHHHHHHHHHSC--HHHHHHHSCHHHHHHHHTSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccccccCHHH---HHHHHHHHHhcCC--HHHHHHhCCHHHHHHHHhcCChHHHHHHHHHhc
Confidence 4578888888884441 2366544 7899999999887 999999999999999999988877666555444
No 83
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=21.16 E-value=59 Score=27.79 Aligned_cols=57 Identities=14% Similarity=0.092 Sum_probs=38.5
Q ss_pred hhhhhhhcccCChHHHHhHHHHHHHHhccCCchhHHHhhHhhhhhhhHH-HHHhccccCC
Q psy1379 383 LTNLVMHLQNQSPIIQQNAIALINALFIKAEPSKRKVISATMCSKQVRN-AILTSVLQPS 441 (446)
Q Consensus 383 l~~l~~~lq~~~~~~~~~a~al~nal~~~a~~~~r~~~~~~l~~~~~r~-~i~~~ii~~~ 441 (446)
.++++.++...+++--.+|+.+|+.|+..+-+.+ +--+.+.+.|+|. ++++-..|..
T Consensus 71 ~e~lhV~I~a~~~e~~~~A~~~I~~ll~~~~~~p--~~~d~~k~~Ql~eLa~~nGt~r~~ 128 (131)
T 1k1g_A 71 DEPLHALVTANTMENVKKAVEQIRNILKQGIETP--EDQNDLRKMQLRELARLNGTLRED 128 (131)
T ss_dssp SCCEEEEEEESSHHHHHHHHHHHHHHHTTTTSCC--TTSSGGGGGGGHHHHHHHTCCC--
T ss_pred CCCeEEEEEECCHHHHHHHHHHHHHHHhccCCCC--ccHHHHHHHHHHHHHHHcCcCCCc
Confidence 4678888888888888899999999997742211 2235566677777 5555555543
No 84
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=20.05 E-value=1.1e+02 Score=26.60 Aligned_cols=67 Identities=19% Similarity=0.280 Sum_probs=42.5
Q ss_pred HHHHHHhhcCCCCCCCchhhhHHHHHHHHHhhCCCCCccchhhhhcccc----hh-HHhhhccC---CChHHHHhHHHHH
Q psy1379 28 IKTVADHVNNPNPVPEKEIVQASLSILESIALNSVGKFSQFSQVENHLT----LT-NLVMHLQN---QSPIIQQNAIALI 99 (446)
Q Consensus 28 I~ki~~~v~~~~~~~~~~i~~~alsIL~~~V~~s~~~y~gf~~v~~~v~----~~-~lv~~L~~---~d~~iq~nalaLi 99 (446)
+.-|..-|..+ .++++...||.+|+.+|.|--..| -.+|. +. .|++.+.. .+..++...+.||
T Consensus 55 ~ral~KRl~~~---~n~~~~l~AL~LLe~cvkNCG~~f------h~eiask~Fl~e~L~kl~~~~~~~~~~Vk~kil~li 125 (152)
T 3rru_A 55 VKALKKRISKN---YNHKEIQLTLSLIDMCVQNCGPSF------QSLIVKKEFVKENLVKLLNPRYNLPLDIQNRILNFI 125 (152)
T ss_dssp HHHHHHHHTTC---CBHHHHHHHHHHHHHHHHHSCHHH------HHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCC---CChHHHHHHHHHHHHHHHhcCHHH------HHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHHHHHH
Confidence 33344444432 467888889999999999985332 33443 23 35665543 3457888888888
Q ss_pred HHHh
Q psy1379 100 NALF 103 (446)
Q Consensus 100 NaL~ 103 (446)
-+.=
T Consensus 126 ~~Wa 129 (152)
T 3rru_A 126 KTWS 129 (152)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7754
Done!