RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1379
(446 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 78.2 bits (192), Expect = 2e-15
Identities = 72/474 (15%), Positives = 134/474 (28%), Gaps = 163/474 (34%)
Query: 8 SFVELMDHGIVSWNILETVFIKTVADHVNNPNPVPEKEIVQASLSILESIAL--NSVGKF 65
+ EL+ F+ V+ V +++ L+ E+ L N +
Sbjct: 56 TPAELVGK-----------FLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDI--- 101
Query: 66 SQFSQVENHLTLTNLVMHLQNQSPIIQQNAIALI----NALFIKAEPSKRKVISATMCSK 121
H L L ++ LI A + P +K SA +
Sbjct: 102 --------H----ALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAV 149
Query: 122 QVRNAILTSVLQPSGGQVGA------EMAHQLYVLQTLTLGLLEQRMNTKMDPQDQDAHD 175
NA L ++ GGQ G E+ LY + +G L + + + D
Sbjct: 150 GEGNAQLVAIF---GGQ-GNTDDYFEELRD-LYQTYHVLVGDLIKFSAETLSELIRTTLD 204
Query: 176 KIKELRRVAFEIDVIGGVDASSKRQMGGYAKDYKKLGFKYDINPAQDFTETPP------G 229
K + ++++ ++ S P +D+ + P G
Sbjct: 205 AEKVFTQG---LNILEWLENPSNT-------------------PDKDYLLSIPISCPLIG 242
Query: 230 MLALDCMIYFARNHPEAYTKQKATKKTLEGTAEKVRLSGLPDTDTLSSDVSGQVRLYFSI 289
++ L + A+ G L S + G
Sbjct: 243 VIQLAHYVVTAKLL------------------------GF-TPGELRSYLKG-------- 269
Query: 290 QFLLDCFAVLVNHSQAGLCVMLAHCLLSFVELMDHGIVSWNILETVFIKTVADHVNNPNP 349
LV + + SF + + +F V + PN
Sbjct: 270 --ATGHSQGLV----TAVAIAETDSWESFFVSVR------KAITVLFFIGVRCYEAYPNT 317
Query: 350 VPEKEIVQASLSILESIA---LNSVG-KFSQVENHLTLTNLVMHLQNQSPIIQQNAIALI 405
I++ SL E + L+ QV++++ TN HL + I+L+
Sbjct: 318 SLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTN--SHLPAGKQV----EISLV 371
Query: 406 N------------ALF--------IKAEP---------SKRKV--------ISA 422
N +L+ KA S+RK+ +++
Sbjct: 372 NGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVAS 425
Score = 50.0 bits (119), Expect = 1e-06
Identities = 59/360 (16%), Positives = 99/360 (27%), Gaps = 146/360 (40%)
Query: 2 LAH----CL---LSFVELMDH---------GIV---------SW--------NILETVFI 28
LAH + EL + G+V SW + +F
Sbjct: 246 LAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFF 305
Query: 29 KTVADHVNNPNPVPEKEIVQASLSILESIA---LNSVGKFSQFSQVENHLTLTNLVMHLQ 85
V + PN I++ SL E + L S+ +Q QV++++ TN HL
Sbjct: 306 IGVRCYEAYPNTSLPPSILEDSLENNEGVPSPML-SISNLTQ-EQVQDYVNKTN--SHLP 361
Query: 86 NQSPIIQQNAIALINALFIKAEPSKRKVISATMCSKQVRNAILTSVLQPSGGQVGAEMAH 145
+ I+L+N +N +++ G +
Sbjct: 362 AGKQV----EISLVNG------A---------------KNLVVS----------GPPQS- 385
Query: 146 QLYVLQTLTLGLLEQRMNTKMD----PQDQ----------------------DAHDKIKE 179
L L L L + + + +D P + A D I +
Sbjct: 386 ----LYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINK 441
Query: 180 -LRRVAFEIDVIGGVDASSKRQMGGYAKDYKKLGFK-YDINPAQDFTETPPGMLALDC-M 236
L + + AKD + YD D +
Sbjct: 442 DLVKNNVSFN----------------AKD---IQIPVYDTFDGSDLRVLSGSISERIVDC 482
Query: 237 IYFARNHPEAYTKQKAT-----------------KKTLEGTAEKVRLSGLPDTDTLSSDV 279
I E T+ KAT + +GT +V ++G D + D
Sbjct: 483 IIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINP-DDDY 541
Score = 46.6 bits (110), Expect = 2e-05
Identities = 53/321 (16%), Positives = 96/321 (29%), Gaps = 91/321 (28%)
Query: 122 QVRNAILTSVLQPSGGQVGAEMAHQLYVLQTLTLGLLEQRMNTKMDPQDQDAHDKIKELR 181
Q++ + +P+ G + L LG + + +P D++ L
Sbjct: 32 QLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLV----EPSKVGQFDQVLNLC 87
Query: 182 RVAFEIDVIGGVDASSKRQMGGYAKDYKKLGFKYDIN--PAQDFTETPPGMLALDCMI-- 237
FE + G DI+ A+ E ++ +I
Sbjct: 88 LTEFENCYLEGN----------------------DIHALAAKLLQENDTTLVKTKELIKN 125
Query: 238 YF-ARNHPEAYTKQKATKKTLEGTAEKVRLSGLPDTDTLSSDVSGQVRL----------- 285
Y AR K+ + + S L + G +L
Sbjct: 126 YITARI---------MAKRPFDKKSN----SAL-----FRAVGEGNAQLVAIFGGQGNTD 167
Query: 286 -YFS-IQFLLDCFAVLVN---HSQAGLCVMLAHCLLSFVELMDHG--IVSWNILETVFIK 338
YF ++ L + VLV A L L ++ G I+ W
Sbjct: 168 DYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEW--------- 218
Query: 339 TVADHVNNPNPVPEKE-IVQASLSI-LESIALNSVGKFSQVENHLTLT--NLVMHLQNQS 394
+ NP+ P+K+ ++ +S L I + + + L T L +L+ +
Sbjct: 219 -----LENPSNTPDKDYLLSIPISCPL--IGVIQLAHYVVTAKLLGFTPGELRSYLKGAT 271
Query: 395 PIIQQNAIALINALFIKAEPS 415
Q L+ A+ I S
Sbjct: 272 GHSQ----GLVTAVAIAETDS 288
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 50.6 bits (120), Expect = 8e-07
Identities = 71/461 (15%), Positives = 135/461 (29%), Gaps = 132/461 (28%)
Query: 1 MLAHCLLSFVELMDHGIVSWNILETVFIKTVADH-VNNPNPVPEKEIVQASLSILESIAL 59
+L+ +FV+ D V ++ +++ K DH + + + V + L S
Sbjct: 21 ILSVFEDAFVDNFDCKDVQ-DMPKSILSKEEIDHIIMSKDAVSGTLRL---FWTLLSKQE 76
Query: 60 NSVGKFSQFSQVENHLTLTNLVMHLQNQSPIIQQNAIALINALFIKAEPSKRKVISATMC 119
V KF VE L + N L++ IK E
Sbjct: 77 EMVQKF-----VEEVL----------------RINYKFLMSP--IKTEQR---------- 103
Query: 120 SKQVRNAILTSVLQPSGGQVGAEMAHQLYVLQTLTLGLLEQRMNTKMDPQDQDAH----- 174
QPS M ++Y+ EQR D Q +
Sbjct: 104 -------------QPS-------MMTRMYI---------EQRDRLYNDNQVFAKYNVSRL 134
Query: 175 DKIKELRRVAFEID-----VIGGVDASSKRQMGGYAKDYKKLGFKYDINPAQDFTETPPG 229
+LR+ E+ +I G + G K + + ++ +
Sbjct: 135 QPYLKLRQALLELRPAKNVLIDG--------VLGSGKTW--VA----LDVCLSYKVQ--- 177
Query: 230 MLALDCMIY---FAR-NHPEAYTKQKATKKTLEGTAEKVRLSGLPDTDTLSSDVSGQVRL 285
+D I+ N PE + R + + ++R
Sbjct: 178 -CKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236
Query: 286 YFSIQFLLDCFAVL--VNHSQAGLCVMLAHCLLSFVELMDHGIVSWNILETVFIKTVADH 343
+ +C VL V +++A + IL T K V D
Sbjct: 237 LLKSKPYENCLLVLLNVQNAKA-------------WNAFNLSC---KILLTTRFKQVTDF 280
Query: 344 VNNPNP-VPEKEIVQASLSILESIALNSVGKFSQVENHLTLTNLVMHLQNQSPIIQQNAI 402
++ + +L+ E +L + + +L + +P +
Sbjct: 281 LSAATTTHISLDHHSMTLTPDEVKSL-----LLKYLD-CRPQDLPREVLTTNPR----RL 330
Query: 403 ALINALFIKAEPSKRKVISATMCSKQVRNAILTSV--LQPS 441
++I A I+ + C K + I +S+ L+P+
Sbjct: 331 SII-AESIRDGLATWDNWKHVNCDK-LTTIIESSLNVLEPA 369
Score = 45.2 bits (106), Expect = 4e-05
Identities = 43/332 (12%), Positives = 89/332 (26%), Gaps = 109/332 (32%)
Query: 2 LAHCLLSFVELMDHGIVSWNILETVFIKTVADHVNNPNPVPEKEIVQASLSILESIALNS 61
+ E + G+ +W+ + V + I+++SL++LE
Sbjct: 328 RRLSI--IAESIRDGLATWDNWKHVNCDKL------------TTIIESSLNVLEPAEYRK 373
Query: 62 VGKFSQFSQVENHLTLTNLVMHLQNQSPIIQQNA---IALINALFIKAEPSKRKVISATM 118
+ F + S + +A L++ ++ S V+ +
Sbjct: 374 M--FDRLS--------------------VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKL 411
Query: 119 CSKQVRNAILTSVLQPSGGQVGAEMAHQLYVLQTLTLGLLEQRMNTKMDPQDQDAHDKIK 178
S+++ + E + + L L + N + H I
Sbjct: 412 HKY--------SLVE----KQPKESTISIPSIY---LELKVKLEN------EYALHRSIV 450
Query: 179 ELRRVAFEIDVIGGVDASSKRQMGGYAKDYKKLGFK-YDINPAQDFTETPPGMLALDCMI 237
+ + D D + Y Y +G +I + T M+ LD
Sbjct: 451 DHYNIPKTFD----SDDLIPPYLDQYF--YSHIGHHLKNIEHPERMTLFR--MVFLD--F 500
Query: 238 YFARNHPEAYTKQKATKKTLEGTAEKVRLSGLPDTDTLSS-DVSGQVRLYFS-------- 288
F K+R + S + Q++ Y
Sbjct: 501 RFLEQ--------------------KIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPK 540
Query: 289 --------IQFLLDCFAVLVNHSQAGLCVMLA 312
+ FL L+ L + +A
Sbjct: 541 YERLVNAILDFLPKIEENLICSKYTDL-LRIA 571
Score = 44.1 bits (103), Expect = 1e-04
Identities = 53/370 (14%), Positives = 99/370 (26%), Gaps = 138/370 (37%)
Query: 1 MLAHCLLSFVELMDHGIVSWN------------ILETVFIKTVADHVNNPNP-VPEKEIV 47
+CLL ++ + V N IL T K V D ++ +
Sbjct: 242 PYENCLL----VLLN--V-QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHH 294
Query: 48 QASLSILESIALNSVGKFSQFSQVENHLTLTNLVMHLQNQ----SPIIQQNAIALINALF 103
+L+ E +L ++ L L + +P +++I A
Sbjct: 295 SMTLTPDEVKSL-----LLKY--------LDCRPQDLPREVLTTNPR----RLSII-AES 336
Query: 104 IKAEPSKRKVISATMCSKQVRNAILTSV--LQPSGGQVGAEMAHQLY------------- 148
I+ + C K + I +S+ L+P AE +++
Sbjct: 337 IRDGLATWDNWKHVNCDK-LTTIIESSLNVLEP------AEY-RKMFDRLSVFPPSAHIP 388
Query: 149 --VLQTL-----------------TLGLLEQR--------------MNTKMDPQDQDAHD 175
+L + L+E++ + K++ + H
Sbjct: 389 TILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLE-NEYALHR 447
Query: 176 KIKELRRVAFEIDVIGGVDASSKRQMGGYAKDYKKLGFK-YDINPAQDFTETP------- 227
I + + D D + Y Y +G +I + T
Sbjct: 448 SIVDHYNIPKTFDS----DDLIPPYLDQYF--YSHIGHHLKNIEHPERMTLFRMVFLDFR 501
Query: 228 ---------------PGMLALDCMI-------YFARNHPEAYTKQKATKKTLEGTAEKVR 265
G + L+ + Y N P+ A L E +
Sbjct: 502 FLEQKIRHDSTAWNASGSI-LNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLI 560
Query: 266 LSGLPDTDTL 275
S TD L
Sbjct: 561 CS--KYTDLL 568
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding
domain, ubiquitin-superfold, armadillo repeats,
actin-binding, coiled coil; 2.30A {Homo sapiens}
Length = 339
Score = 33.6 bits (76), Expect = 0.100
Identities = 15/161 (9%), Positives = 48/161 (29%), Gaps = 23/161 (14%)
Query: 5 CLLSFVELMDHGIVSWNILETVFIKTVADHVNNPNPVPEKEIVQASLSILESI------- 57
L+ FV+ M + + ++ ++ + +V+ +L +L
Sbjct: 186 QLMLFVDGMLGVVAHSDTIQWLYTLCASLSRL---------VVKTALKLLLVFVEYSENN 236
Query: 58 ---ALNSVGKFSQFSQVENHLTLTNLVMHLQNQSPIIQQNAIALINALFIKAE-PSKRKV 113
+ +V + + L +++ P + + LIN
Sbjct: 237 APLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLINKTLAALPDQDSFYD 296
Query: 114 ISATMCSKQVRNAILTSVLQPSGGQVGAEMAHQLYVLQTLT 154
++ + + + + + ++ QL + +
Sbjct: 297 VTDALEQQGMEALVQRHL---GTAGTDVDLRTQLVLYENAL 334
Score = 30.9 bits (69), Expect = 0.78
Identities = 19/147 (12%), Positives = 44/147 (29%), Gaps = 29/147 (19%)
Query: 287 FSIQFL----LDCFAVLVNHSQAGL---CVMLAHCLLSFVELMDHGIVSWNILETVFIKT 339
+F+ L C + + + L+ FV+ M + + ++ ++
Sbjct: 152 LVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHSDTIQWLYTLC 211
Query: 340 VADHVNNPNPVPEKEIVQASLSILESI-------------ALNSVGKFSQVENHLTLTNL 386
+ +V+ +L +L A+NSV + L ++
Sbjct: 212 ASLSRL---------VVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSI 262
Query: 387 VMHLQNQSPIIQQNAIALINALFIKAE 413
+ P + + LIN
Sbjct: 263 LEEKNGADPELLVYTVTLINKTLAALP 289
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 31.8 bits (72), Expect = 0.51
Identities = 27/186 (14%), Positives = 54/186 (29%), Gaps = 41/186 (22%)
Query: 219 PAQDFTETPPGMLA----------LDCMIYFARNHPEAYTKQKATKKTLEG---TAEKVR 265
P++D E + + + + + L T + +
Sbjct: 1279 PSEDQNEFLLERTREIHNEAESQLRAAQQQWGNDFYKRDPRIAPLRGALATYGLTIDDLG 1338
Query: 266 LSGLPDTDTLSSDV--SGQVRLYFSIQFLLDCFAVLVNHSQ----------AGLCVMLAH 313
++ T T ++D S + + V+ Q AG M+
Sbjct: 1339 VASFHGTSTKANDKNESATINEMMKHLGRSEGNPVIGV-FQKFLTGHPKGAAGA-WMMNG 1396
Query: 314 CLLSFVELMDHGIVSWNI-LETVFIK-TVADHVNNPNPVPEKEIVQASLSILESIALNSV 371
L ++ GI+ N + V ++V P+ + + V+A S
Sbjct: 1397 ALQI----LNSGIIPGNRNADNVDKILEQFEYVLYPSKTLKTDGVRAVSI-------TSF 1445
Query: 372 GKFSQV 377
G F Q
Sbjct: 1446 G-FGQK 1450
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin,
fusion protein, fluore protein, transcription; HET: CR2;
1.40A {Aequorea victoria} PDB: 3ako_B*
Length = 307
Score = 31.3 bits (70), Expect = 0.55
Identities = 16/81 (19%), Positives = 26/81 (32%), Gaps = 7/81 (8%)
Query: 185 FEIDVIGGVDASSKRQMGGYAKDYKKLGFKYDI-NPA---QDFTETPPGMLALDCMIYFA 240
F + G DA+ + + KL + Q F P M D +F
Sbjct: 30 FSVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTFXVQCFARYPDHMKQHD---FFK 86
Query: 241 RNHPEAYTKQKATKKTLEGTA 261
PE Y +++ +G
Sbjct: 87 SAMPEGYVQERTIFFKDDGNY 107
>2p5x_A ASMTL, N-acetylserotonin O-methyltransferase-like protei;
structural genomics, structural genomics consortium,
unknown function; 2.00A {Homo sapiens}
Length = 230
Score = 27.9 bits (63), Expect = 5.4
Identities = 11/70 (15%), Positives = 21/70 (30%), Gaps = 10/70 (14%)
Query: 209 KKLGFKYDINPAQDFTETPPGMLALDCMIYFARNHPEAYTKQKATKKTLEGTAEKVRLSG 268
G ++++ P+ F E P Y + A +K LE +
Sbjct: 20 SNAGLRFEVVPS-KFKEKLDKASFAT---------PYGYAMETAKQKALEVANRLYQKDL 69
Query: 269 LPDTDTLSSD 278
+ +D
Sbjct: 70 RAPDVVIGAD 79
>2hnh_A DNA polymerase III alpha subunit; DNA replication,
nucleotidyltransferase, beta, PHP, transferase; HET:
DNA; 2.30A {Escherichia coli} PDB: 2hqa_A*
Length = 910
Score = 28.6 bits (65), Expect = 5.8
Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 10/49 (20%)
Query: 158 LEQRMNTKMDPQDQDAHDKIKELRRVAFEIDVIGGVDASSKRQMG--GY 204
LE+R+ +++ + + R+ E+ VI QMG GY
Sbjct: 300 LEERLAFLFPDEEERLKRRPEYDERLETELQVI--------NQMGFPGY 340
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin,
tetra-tricopeptide repeat, binding protein required for
myosin function; 2.99A {Drosophila melanogaster}
Length = 810
Score = 27.9 bits (61), Expect = 9.3
Identities = 11/52 (21%), Positives = 19/52 (36%), Gaps = 1/52 (1%)
Query: 66 SQFSQVENHLTLTNLVMHLQNQSPIIQQNAI-ALINALFIKAEPSKRKVISA 116
S SQ L + + + ++Q+ + AL+ E KR A
Sbjct: 508 SHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQA 559
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.132 0.372
Gapped
Lambda K H
0.267 0.0761 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,283,060
Number of extensions: 366231
Number of successful extensions: 946
Number of sequences better than 10.0: 1
Number of HSP's gapped: 940
Number of HSP's successfully gapped: 26
Length of query: 446
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 349
Effective length of database: 3,993,456
Effective search space: 1393716144
Effective search space used: 1393716144
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.4 bits)