RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1379
         (446 letters)



>d2nn6d1 d.14.1.4 (D:25-146) Exosome complex exonuclease RRP46
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 122

 Score = 27.4 bits (60), Expect = 1.6
 Identities = 7/27 (25%), Positives = 11/27 (40%)

Query: 178 KELRRVAFEIDVIGGVDASSKRQMGGY 204
             LR  A E +++   D S+    G  
Sbjct: 2   CSLRHFACEQNLLSRPDGSASFLQGDT 28


>d1pc6a_ d.262.1.1 (A:) NinB {Bacteriophage lambda [TaxId: 10710]}
          Length = 141

 Score = 25.9 bits (57), Expect = 6.9
 Identities = 8/32 (25%), Positives = 12/32 (37%), Gaps = 8/32 (25%)

Query: 88  SPIIQQNAIALINA--------LFIKAEPSKR 111
           SP  QQNAI  +          + +  +   R
Sbjct: 10  SPAHQQNAIHAVQQILPDPTKPIVVTIQERNR 41



 Score = 25.9 bits (57), Expect = 6.9
 Identities = 8/32 (25%), Positives = 12/32 (37%), Gaps = 8/32 (25%)

Query: 394 SPIIQQNAIALINA--------LFIKAEPSKR 417
           SP  QQNAI  +          + +  +   R
Sbjct: 10  SPAHQQNAIHAVQQILPDPTKPIVVTIQERNR 41


>d1dofa_ a.127.1.1 (A:) Adenylosuccinate lyase {Archaeon Pyrobaculum
           aerophilum [TaxId: 13773]}
          Length = 402

 Score = 26.1 bits (56), Expect = 9.3
 Identities = 6/18 (33%), Positives = 11/18 (61%)

Query: 171 QDAHDKIKELRRVAFEID 188
            +A+ K KE++ + FE  
Sbjct: 368 AEAYKKAKEVKALTFEYQ 385


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.132    0.372 

Gapped
Lambda     K      H
   0.267   0.0500    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,490,420
Number of extensions: 64650
Number of successful extensions: 124
Number of sequences better than 10.0: 1
Number of HSP's gapped: 124
Number of HSP's successfully gapped: 5
Length of query: 446
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 358
Effective length of database: 1,199,356
Effective search space: 429369448
Effective search space used: 429369448
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.1 bits)