Query psy13790
Match_columns 193
No_of_seqs 111 out of 184
Neff 5.9
Searched_HMMs 29240
Date Fri Aug 16 20:36:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13790.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13790hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3o27_A Putative uncharacterize 39.1 8.5 0.00029 26.2 0.6 33 54-98 22-54 (68)
2 2o62_A Hypothetical protein; s 24.5 2.4E+02 0.0082 23.5 7.4 25 82-106 228-252 (270)
3 1jhj_A APC10; beta sandwich, j 18.5 3.2E+02 0.011 21.2 6.5 90 71-166 58-156 (171)
4 2w7q_A Outer-membrane lipoprot 17.9 3.2E+02 0.011 20.6 9.0 28 87-114 159-186 (204)
5 3jtz_A Integrase; four strande 17.7 1.8E+02 0.0062 19.8 4.4 30 76-108 26-56 (88)
6 2oxg_Z SOXZ protein; immunoglo 17.5 2.4E+02 0.0082 20.1 5.2 29 73-102 72-100 (108)
7 2cov_D Beta-1,3-xylanase; carb 17.1 76 0.0026 22.9 2.3 13 123-135 30-42 (104)
8 3ju0_A Phage integrase; four s 15.6 2.3E+02 0.008 20.1 4.7 30 76-108 26-56 (108)
9 1dmu_A BGLI restriction endonu 15.3 72 0.0025 26.8 2.0 57 31-90 165-224 (299)
10 2yhg_A SDE_182CT, cellulose-bi 14.6 2.4E+02 0.0082 25.4 5.4 14 84-97 409-422 (437)
No 1
>3o27_A Putative uncharacterized protein; swapped-hairpin fold, transcription factor, DNA binding PROT; 2.80A {Sulfolobus islandicus}
Probab=39.11 E-value=8.5 Score=26.16 Aligned_cols=33 Identities=21% Similarity=0.387 Sum_probs=25.3
Q ss_pred cceeeEEcCCCCCcccceeecEEEEEEEecCccEEEEEEEEeCCC
Q psy13790 54 VSTTFISCPADPKKTLGIKLPFLVMIIKNLKKYFTFEVQVLDDKN 98 (193)
Q Consensus 54 ~~~t~I~~P~~~~~sLgl~~p~L~lq~k~l~k~F~~ei~i~D~~~ 98 (193)
..+-||++|++-.+.|||+ -|..|.++|+ |.++
T Consensus 22 ~etyYInIPaeI~kaLgIk----------~gD~fel~ve--~kdg 54 (68)
T 3o27_A 22 HTTFYLLIPKDIAEALDIK----------PDDTFILNME--QKDG 54 (68)
T ss_dssp CCCEEEEECHHHHHHTTCC----------TTCCEEEEEE--EETT
T ss_pred ceEEEEeCcHHHHHHhCCC----------CCCEEEEEEe--cCCC
Confidence 4567899999999999998 4677777766 5454
No 2
>2o62_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; 1.75A {Nostoc punctiforme} SCOP: b.60.1.9 b.60.1.9
Probab=24.49 E-value=2.4e+02 Score=23.45 Aligned_cols=25 Identities=24% Similarity=0.329 Sum_probs=21.8
Q ss_pred ecCccEEEEEEEEeCCCcEEEEEEE
Q psy13790 82 NLKKYFTFEVQVLDDKNVRRRFRAS 106 (193)
Q Consensus 82 ~l~k~F~~ei~i~D~~~~~rR~~~S 106 (193)
..++.|.+|++=.-+.+.++|+.-+
T Consensus 228 ~~~~~F~lev~Wl~~~~~~qrlir~ 252 (270)
T 2o62_A 228 QLRQPLFLEAGWLIQSDLRQRMIRS 252 (270)
T ss_dssp CTTSCEEEEEEEEEETTEEEEEEEE
T ss_pred cCCCcEEEEEEEEeCCCeeEEEEEE
Confidence 4579999999999999999998765
No 3
>1jhj_A APC10; beta sandwich, jellyroll, cell cycle; 1.60A {Homo sapiens} SCOP: b.18.1.9
Probab=18.46 E-value=3.2e+02 Score=21.23 Aligned_cols=90 Identities=9% Similarity=0.158 Sum_probs=52.2
Q ss_pred eeecEEEEEE-Eec-CccEEEEEEE-EeCCCcEEEEEEEeeeeeeeecCcEEEecCcCCCCceEEEeeHHHHHHHHhCcc
Q psy13790 71 IKLPFLVMII-KNL-KKYFTFEVQV-LDDKNVRRRFRASNYQSTTRVKPFICTMPMRLDDGWNQIQFNLADFTRRAYGTN 147 (193)
Q Consensus 71 l~~p~L~lq~-k~l-~k~F~~ei~i-~D~~~~~rR~~~Sn~~k~~~~~~~~~~iPl~l~~~W~~l~idL~~l~~~~~~t~ 147 (193)
..-.++.|++ +.. =....+.++- .|++-+-.++.+.--...-..+ ....+.+.-..||..+.+.-.+ . ...
T Consensus 58 ~qpH~I~i~f~k~v~i~~l~i~vd~~~DeSYtPs~I~v~aG~~~~dL~-ei~~v~l~~p~Gwv~i~l~~~~--~---~~~ 131 (171)
T 1jhj_A 58 SQPHLVNIQFRRKTTVKTLCIYADYKSDESYTPSKISVRVGNNFHNLQ-EIRQLELVEPSGWIHVPLTDNH--K---KPT 131 (171)
T ss_dssp SSSEEEEEEEEEEEEECEEEEEEEHHHHGGGSEEEEEEEEESSTTSCE-EEEEEECSSCEEEEEEECBCTT--S---SBE
T ss_pred CCCeEEEEEECCCceEEEEEEEECCCCCCCCCcEEEEEEEeCCcccce-eEEEEEccCCCEEEEEEeccCC--C---Cce
Confidence 3356777787 333 2567777776 7888888888875433221111 1345666666889888872111 0 012
Q ss_pred eeeEeeEEEeee------eeeeeee
Q psy13790 148 YIETLRVQIHAN------CRIRRVY 166 (193)
Q Consensus 148 y~~~~~i~I~an------crlRrIf 166 (193)
.....+|.|-+| ||||.|=
T Consensus 132 ~~~~IQI~I~~nhqnG~DthIR~ik 156 (171)
T 1jhj_A 132 RTFMIQIAVLANHQNGRDTHMRQIK 156 (171)
T ss_dssp EEEEEEEEEEEEGGGCSSCEECEEE
T ss_pred eEEEEEEEEeccCCCCCccEEEEEE
Confidence 233667777664 5888653
No 4
>2w7q_A Outer-membrane lipoprotein carrier protein; periplasmic chaperone, lipoprotein transport, transport, CHA protein transport; 1.88A {Pseudomonas aeruginosa}
Probab=17.91 E-value=3.2e+02 Score=20.57 Aligned_cols=28 Identities=11% Similarity=0.101 Sum_probs=23.1
Q ss_pred EEEEEEEEeCCCcEEEEEEEeeeeeeee
Q psy13790 87 FTFEVQVLDDKNVRRRFRASNYQSTTRV 114 (193)
Q Consensus 87 F~~ei~i~D~~~~~rR~~~Sn~~k~~~~ 114 (193)
..-.+.+.|..|.+-++.|||+......
T Consensus 159 ~l~~~~i~d~~G~~t~i~f~~~~~n~~l 186 (204)
T 2w7q_A 159 KVNDMQMIDGVGQRTNILFFDVKMNEAL 186 (204)
T ss_dssp EEEEEEEECTTCCEEEEEEEEEEESCCC
T ss_pred cceEEEEEECCCCEEEEEEEccccCCCC
Confidence 5667889999999999999998876544
No 5
>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A
Probab=17.73 E-value=1.8e+02 Score=19.84 Aligned_cols=30 Identities=13% Similarity=0.314 Sum_probs=22.4
Q ss_pred EEEEEEecC-ccEEEEEEEEeCCCcEEEEEEEee
Q psy13790 76 LVMIIKNLK-KYFTFEVQVLDDKNVRRRFRASNY 108 (193)
Q Consensus 76 L~lq~k~l~-k~F~~ei~i~D~~~~~rR~~~Sn~ 108 (193)
|+|.|.|-| +.|.|.-.+ .+.++++.+-++
T Consensus 26 L~L~V~psG~K~w~~ryr~---~Gk~~~~~LG~y 56 (88)
T 3jtz_A 26 LYLLVKPGGSRHWYLKYRI---SGKESRIALGAY 56 (88)
T ss_dssp EEEEECTTSCEEEEEEEEE---TTEEEEEEEEET
T ss_pred eEEEEecCCCEEEEEEEEe---CCeEEEEEeECC
Confidence 678888875 788888764 567788887765
No 6
>2oxg_Z SOXZ protein; immunoglobulin-like beta-sandwich fold, transport protein; 1.40A {Paracoccus denitrificans} PDB: 2ox5_Z 2oxh_Z*
Probab=17.52 E-value=2.4e+02 Score=20.11 Aligned_cols=29 Identities=17% Similarity=0.123 Sum_probs=23.6
Q ss_pred ecEEEEEEEecCccEEEEEEEEeCCCcEEE
Q psy13790 73 LPFLVMIIKNLKKYFTFEVQVLDDKNVRRR 102 (193)
Q Consensus 73 ~p~L~lq~k~l~k~F~~ei~i~D~~~~~rR 102 (193)
-||+.+.+++-+.- .+++...|+++....
T Consensus 72 NP~~~F~~~~~~~g-~l~v~~~Dn~G~~~~ 100 (108)
T 2oxg_Z 72 NPYFEFDAKVDAAG-EFKFTWYDDDGSVYE 100 (108)
T ss_dssp SCEEEEEEEECSSE-EEEEEEEETTSCEEE
T ss_pred CCeEEEEEecCCCc-EEEEEEEECCCCEEE
Confidence 59999999886544 889999999998653
No 7
>2cov_D Beta-1,3-xylanase; carbohydrate-binding module, family 31 CBM, beta-1,3-xylanas binding protein; 1.25A {Alcaligenes SP}
Probab=17.10 E-value=76 Score=22.85 Aligned_cols=13 Identities=31% Similarity=0.680 Sum_probs=11.0
Q ss_pred CcCCCCceEEEee
Q psy13790 123 MRLDDGWNQIQFN 135 (193)
Q Consensus 123 l~l~~~W~~l~id 135 (193)
...+.+|+.||+|
T Consensus 30 ~gWsAgwnY~CLd 42 (104)
T 2cov_D 30 KGWSAGWNYVCLN 42 (104)
T ss_dssp CCCCCSSEEEEET
T ss_pred CCccceeeEEEec
Confidence 3668999999998
No 8
>3ju0_A Phage integrase; four stranded beta-sheet, DNA binding protein; 1.60A {Pectobacterium atrosepticum}
Probab=15.59 E-value=2.3e+02 Score=20.12 Aligned_cols=30 Identities=13% Similarity=0.365 Sum_probs=22.4
Q ss_pred EEEEEEecC-ccEEEEEEEEeCCCcEEEEEEEee
Q psy13790 76 LVMIIKNLK-KYFTFEVQVLDDKNVRRRFRASNY 108 (193)
Q Consensus 76 L~lq~k~l~-k~F~~ei~i~D~~~~~rR~~~Sn~ 108 (193)
|+|.|.|-| +.|.|.-.+ .+.++++.+-.+
T Consensus 26 L~L~V~psG~K~w~~rYr~---~GK~~~~~LG~y 56 (108)
T 3ju0_A 26 MHLLVHPNGSKYWRLSYRF---EKKQRLLALGVY 56 (108)
T ss_dssp EEEEECTTSCEEEEEEEEE---TTEEEEEEEEEE
T ss_pred eEEEEEcCCCEEEEEEEEE---cCceEEEecCCC
Confidence 678888876 788888764 567788877765
No 9
>1dmu_A BGLI restriction endonuclease; protein-DNA complex, active site calcium IONS, alpha/beta structure, A:A mismatch, hydrolase/DNA complex; HET: DNA; 2.20A {Bacillus subtilis} SCOP: c.52.1.4
Probab=15.27 E-value=72 Score=26.83 Aligned_cols=57 Identities=23% Similarity=0.265 Sum_probs=42.7
Q ss_pred CCcEEEeeccccceeEEEEEcCCcceeeEEcCCCCC---cccceeecEEEEEEEecCccEEEE
Q psy13790 31 NGHIKRITDNDIQSLVLEIVGTNVSTTFISCPADPK---KTLGIKLPFLVMIIKNLKKYFTFE 90 (193)
Q Consensus 31 ~G~V~~v~D~~iks~V~~i~G~~~~~t~I~~P~~~~---~sLgl~~p~L~lq~k~l~k~F~~e 90 (193)
+|+ .-++...|+...+.|+|+. ++++-.|+-|. -+=|.+-|.+++.+||...--++|
T Consensus 165 ~G~-W~~f~~Gi~Nn~~ti~G~R--~n~~F~p~lPPlYilsDg~ivpvv~~~iKpvY~m~sl~ 224 (299)
T 1dmu_A 165 NGD-WAQLEGGIQNNQQTIQGPR--SSQIFLPTIPPLYILSDGTIAPVVHLFIKPIYAMRSLT 224 (299)
T ss_dssp CCB-CCSTTSCCBCCCEEEECSS--CEEEECCCBCSEEECTTCCEEEEEEEEEEEEEEEGGGS
T ss_pred CCc-HHHHhcccccCeeeeccCc--CCccccCCCCCeEEecCCceeeEEEEEEehhhhhhhcc
Confidence 455 6677888999999999987 36777777653 344899999999999975443333
No 10
>2yhg_A SDE_182CT, cellulose-binding protein; hydrolase, glycoside hydrolase; HET: BTB; 1.08A {Saccharophagus degradans}
Probab=14.56 E-value=2.4e+02 Score=25.36 Aligned_cols=14 Identities=14% Similarity=0.131 Sum_probs=12.6
Q ss_pred CccEEEEEEEEeCC
Q psy13790 84 KKYFTFEVQVLDDK 97 (193)
Q Consensus 84 ~k~F~~ei~i~D~~ 97 (193)
+..+.|.+.|+|++
T Consensus 409 ~~tl~f~LtVTD~~ 422 (437)
T 2yhg_A 409 GKDIHILLTLRDNG 422 (437)
T ss_dssp TCEEEEEEEEEECS
T ss_pred CcEEEEEEEEEeCC
Confidence 67899999999998
Done!