Query psy13790
Match_columns 193
No_of_seqs 111 out of 184
Neff 5.9
Searched_HMMs 13730
Date Fri Aug 16 20:36:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13790.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/13790hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v8ha1 b.1.18.19 (A:2-107) Su 28.7 37 0.0027 22.8 4.5 28 72-100 70-97 (106)
2 d1v0aa1 b.18.1.30 (A:4-170) En 24.2 82 0.006 21.8 6.0 23 122-144 103-125 (167)
3 d2q3za1 b.1.18.9 (A:15-145) Tr 20.0 70 0.0051 22.0 4.7 55 83-137 21-82 (131)
4 d2vy4a1 g.37.1.7 (A:53-87) U11 15.1 4.9 0.00036 22.3 -2.2 8 158-165 24-31 (35)
5 d2q3za2 b.1.5.1 (A:472-585) Tr 11.9 1.9E+02 0.014 18.7 5.6 25 82-106 13-37 (114)
6 d1jbja2 b.1.1.4 (A:1-100) CD3 11.6 80 0.0058 21.1 2.9 25 39-66 2-26 (100)
7 d2ozga1 d.106.1.4 (A:291-395) 10.7 2E+02 0.015 18.3 5.7 16 131-146 53-68 (105)
8 d2gycm1 c.55.4.1 (M:3-115) Rib 10.5 79 0.0057 21.3 2.6 25 90-114 34-58 (113)
9 d2j01s1 c.55.4.1 (S:23-108) Ri 10.4 52 0.0038 21.2 1.5 25 89-113 13-37 (86)
10 d2azea1 e.63.1.1 (A:199-346) T 8.9 1.4E+02 0.01 21.1 3.6 36 69-108 57-92 (148)
No 1
>d1v8ha1 b.1.18.19 (A:2-107) Sulfur oxidation protein SoxZ {Thermus thermophilus [TaxId: 274]}
Probab=28.70 E-value=37 Score=22.78 Aligned_cols=28 Identities=21% Similarity=0.262 Sum_probs=23.2
Q ss_pred eecEEEEEEEecCccEEEEEEEEeCCCcE
Q psy13790 72 KLPFLVMIIKNLKKYFTFEVQVLDDKNVR 100 (193)
Q Consensus 72 ~~p~L~lq~k~l~k~F~~ei~i~D~~~~~ 100 (193)
.-|||.+.+++-+.. .++|...|+++..
T Consensus 70 ~NP~~~F~~~~~~~g-~l~v~~~Dn~G~~ 97 (106)
T d1v8ha1 70 ANPLYAFKFKAEKAG-TFTIKLKDTDGDT 97 (106)
T ss_dssp SSCEEEEEEECCSCE-EEEEEEEETTSCE
T ss_pred CCCeEEEEEccCCCc-eEEEEEEECCCCE
Confidence 469999999876544 7999999999986
No 2
>d1v0aa1 b.18.1.30 (A:4-170) Endoglucanase H {Clostridium thermocellum [TaxId: 1515]}
Probab=24.24 E-value=82 Score=21.76 Aligned_cols=23 Identities=26% Similarity=0.618 Sum_probs=18.4
Q ss_pred cCcCCCCceEEEeeHHHHHHHHh
Q psy13790 122 PMRLDDGWNQIQFNLADFTRRAY 144 (193)
Q Consensus 122 Pl~l~~~W~~l~idL~~l~~~~~ 144 (193)
.+...++|+.+.|+..+|....+
T Consensus 103 ~f~~~~~W~~V~IPF~~F~~~~~ 125 (167)
T d1v0aa1 103 SITPDSSWKTIEIPFSSFRRRLD 125 (167)
T ss_dssp EECCCSSCEEEEEEGGGCEECCS
T ss_pred EEecCCccEEEEEEHHHcccccc
Confidence 34567889999999999987654
No 3
>d2q3za1 b.1.18.9 (A:15-145) Transglutaminase N-terminal domain {Human (Homo sapiens), tissue isozyme [TaxId: 9606]}
Probab=20.03 E-value=70 Score=21.96 Aligned_cols=55 Identities=9% Similarity=0.128 Sum_probs=40.2
Q ss_pred cCccEEEEEEEE----eCCCcEEEEEEEeeeeeeeecCcEEEecCcC---CCCceEEEeeHH
Q psy13790 83 LKKYFTFEVQVL----DDKNVRRRFRASNYQSTTRVKPFICTMPMRL---DDGWNQIQFNLA 137 (193)
Q Consensus 83 l~k~F~~ei~i~----D~~~~~rR~~~Sn~~k~~~~~~~~~~iPl~l---~~~W~~l~idL~ 137 (193)
=|+.|.+.|..- |.+.-+-.|.+++--+-...+.+.+.+|+.- .+.|.--...-.
T Consensus 21 RGQ~F~i~l~f~~r~~~~~~d~l~l~~~~G~~P~~~~gT~~~~~~~~~~~~~~W~a~v~~~~ 82 (131)
T d2q3za1 21 RGQPFWLTLHFEGRNYQASVDSLTFSVVTGPAPSQEAGTKARFPLRDAVEEGDWTATVVDQQ 82 (131)
T ss_dssp TTSCEEEEEEESSSCCCTTTEEEEEEEEESSSCCTTTTSEEEEEBCSCCCTTSCEEEEEEEC
T ss_pred CCCcEEEEEEecCcCCCCcccEEEEEEEeCCCCCccCCCEEEEeeccCCCCCCceEEEEecC
Confidence 388999888873 6666788888888776666677888999864 467877655433
No 4
>d2vy4a1 g.37.1.7 (A:53-87) U11/U12 small nuclear ribonucleoprotein 48 kDa protein, U11-48K {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.13 E-value=4.9 Score=22.25 Aligned_cols=8 Identities=50% Similarity=1.302 Sum_probs=4.5
Q ss_pred eeeeeeee
Q psy13790 158 ANCRIRRV 165 (193)
Q Consensus 158 ancrlRrI 165 (193)
|+||||++
T Consensus 24 asCrLRkl 31 (35)
T d2vy4a1 24 ASCRLRKM 31 (35)
T ss_dssp HHHHHHHC
T ss_pred HHhhHhhc
Confidence 45666654
No 5
>d2q3za2 b.1.5.1 (A:472-585) Transglutaminase, two C-terminal domains {Human (Homo sapiens), tissue isozyme [TaxId: 9606]}
Probab=11.86 E-value=1.9e+02 Score=18.74 Aligned_cols=25 Identities=12% Similarity=0.117 Sum_probs=21.1
Q ss_pred ecCccEEEEEEEEeCCCcEEEEEEE
Q psy13790 82 NLKKYFTFEVQVLDDKNVRRRFRAS 106 (193)
Q Consensus 82 ~l~k~F~~ei~i~D~~~~~rR~~~S 106 (193)
++|++|.+-+.+...++..|.+++.
T Consensus 13 ~iG~Df~v~~~~~N~s~~~~~v~l~ 37 (114)
T d2q3za2 13 NMGSDFDVFAHITNNTAEEYVCRLL 37 (114)
T ss_dssp BTTCCEEEEEEEEECSSSCEEEEEE
T ss_pred cCCCCEEEEEEEEeCCCCCEEEEEE
Confidence 4799999999999998888877764
No 6
>d1jbja2 b.1.1.4 (A:1-100) CD3 epsilon chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]}
Probab=11.63 E-value=80 Score=21.13 Aligned_cols=25 Identities=32% Similarity=0.577 Sum_probs=18.1
Q ss_pred ccccceeEEEEEcCCcceeeEEcCCCCC
Q psy13790 39 DNDIQSLVLEIVGTNVSTTFISCPADPK 66 (193)
Q Consensus 39 D~~iks~V~~i~G~~~~~t~I~~P~~~~ 66 (193)
|.+-+.+-+.|.|..+ -++||....
T Consensus 2 d~eq~~ykVSISGTtV---~LTCP~~~~ 26 (100)
T d1jbja2 2 DAENIEYKVSISGTSV---ELTCPLDSD 26 (100)
T ss_dssp CSCCCCCEEEEETTEE---EEECSSCCC
T ss_pred ccccceEEEEEeCCEE---EEECCCCCC
Confidence 4455667789999654 599997643
No 7
>d2ozga1 d.106.1.4 (A:291-395) Putative acetyltransferase Ava4977 {Anabaena variabilis [TaxId: 1172]}
Probab=10.66 E-value=2e+02 Score=18.28 Aligned_cols=16 Identities=6% Similarity=0.191 Sum_probs=14.5
Q ss_pred EEEeeHHHHHHHHhCc
Q psy13790 131 QIQFNLADFTRRAYGT 146 (193)
Q Consensus 131 ~l~idL~~l~~~~~~t 146 (193)
.+.+|++.|++.++|.
T Consensus 53 d~~l~I~~Ls~l~~G~ 68 (105)
T d2ozga1 53 ELQLDIKGLASLYTSL 68 (105)
T ss_dssp CEEEEHHHHHHHHHTS
T ss_pred ceEEcHHHHHHHHhCC
Confidence 4899999999999984
No 8
>d2gycm1 c.55.4.1 (M:3-115) Ribosomal protein L18 (L18p) {Escherichia coli [TaxId: 562]}
Probab=10.46 E-value=79 Score=21.32 Aligned_cols=25 Identities=16% Similarity=0.062 Sum_probs=20.6
Q ss_pred EEEEEeCCCcEEEEEEEeeeeeeee
Q psy13790 90 EVQVLDDKNVRRRFRASNYQSTTRV 114 (193)
Q Consensus 90 ei~i~D~~~~~rR~~~Sn~~k~~~~ 114 (193)
..+|+||.+..--.+.||..++.+.
T Consensus 34 yaQiIdd~~~~tl~saST~~k~~~~ 58 (113)
T d2gycm1 34 YAQVIAPNGSEVLVAASTVEKAIAE 58 (113)
T ss_dssp EEEEEETTTTEEEEEEETTGGGGTS
T ss_pred EEEEEEccCCcEEEEeeehhhhhhh
Confidence 4677899999999999998887653
No 9
>d2j01s1 c.55.4.1 (S:23-108) Ribosomal protein L18 (L18p) {Thermus thermophilus [TaxId: 274]}
Probab=10.41 E-value=52 Score=21.25 Aligned_cols=25 Identities=20% Similarity=0.206 Sum_probs=20.4
Q ss_pred EEEEEEeCCCcEEEEEEEeeeeeee
Q psy13790 89 FEVQVLDDKNVRRRFRASNYQSTTR 113 (193)
Q Consensus 89 ~ei~i~D~~~~~rR~~~Sn~~k~~~ 113 (193)
|..+|+||.+...-.+.||..+..+
T Consensus 13 iyaQiIDd~~~~tl~s~St~~k~~k 37 (86)
T d2j01s1 13 IYAQIIDDEKGVTLVSASSLALKLK 37 (86)
T ss_dssp BCEEEEETTTTEEEEEECSTTTCCC
T ss_pred EEEEEEEcCCCeEEEEEeccchhhc
Confidence 3478889999999999999877654
No 10
>d2azea1 e.63.1.1 (A:199-346) Transcription factor DP-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.88 E-value=1.4e+02 Score=21.13 Aligned_cols=36 Identities=25% Similarity=0.319 Sum_probs=26.1
Q ss_pred cceeecEEEEEEEecCccEEEEEEEEeCCCcEEEEEEEee
Q psy13790 69 LGIKLPFLVMIIKNLKKYFTFEVQVLDDKNVRRRFRASNY 108 (193)
Q Consensus 69 Lgl~~p~L~lq~k~l~k~F~~ei~i~D~~~~~rR~~~Sn~ 108 (193)
=||-+||++++= .+.=++|+.|.+|.... .|-|++.
T Consensus 57 ~~I~LPFIiV~T---~~~t~IdceISeDk~~y-~F~Fn~t 92 (148)
T d2azea1 57 SVIHLPFIIVNT---SKKTVIDCSISNDKFEY-LFNFDNT 92 (148)
T ss_dssp GEEESSCEEEEE---ESSCCEEEEECTTSSEE-EEEESSC
T ss_pred CeeecCEEEEec---CCCCEEEEEEcccceeE-EecCCCC
Confidence 488899998766 55678899988877544 6666553
Done!