RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13790
(193 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.5 bits (86), Expect = 0.002
Identities = 39/267 (14%), Positives = 68/267 (25%), Gaps = 109/267 (40%)
Query: 24 IWDKKV--------------RNGHIKRITDNDIQSLVLEIVGTNVSTTF----------- 58
+ + K R K++TD + I + S T
Sbjct: 253 VQNAKAWNAFNLSCKILLTTRF---KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK 309
Query: 59 -ISCPAD--PKKTLGIKLPFLVMII-----------KNLKKYF------TFE--VQVLDD 96
+ C P++ L P + II N K E + VL+
Sbjct: 310 YLDCRPQDLPREVLTT-NPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP 368
Query: 97 KNVRRRFRA-----SNYQSTTRV-------KPFICTMPM-------RLDDGWNQIQFNLA 137
R+ F + T + M + L + +
Sbjct: 369 AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPK------ 422
Query: 138 DFTRRAYGTNYIETL-----RVQIHANC----RIRRVYFSDRL---------YS------ 173
+ T Y+E +H + I + + SD L YS
Sbjct: 423 ESTISIPSI-YLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHL 481
Query: 174 ----EDELPAEF-KLFLP---IQNKVK 192
E F +FL ++ K++
Sbjct: 482 KNIEHPERMTLFRMVFLDFRFLEQKIR 508
Score = 30.6 bits (68), Expect = 0.36
Identities = 18/137 (13%), Positives = 39/137 (28%), Gaps = 33/137 (24%)
Query: 76 LVMIIKNLKKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICTMPMR-----LDDGWN 130
++ +++ L D + + R + Q+ ++ + + P L + N
Sbjct: 198 VLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA--ELRRLLKSKPYENCLLVLLNVQN 255
Query: 131 QIQFNLADF-------TRRAYGTNYIETLRVQIHANCRIRRVYFSDRLY----------- 172
+N + TR T+++ I + S L
Sbjct: 256 AKAWNAFNLSCKILLTTRFKQVTDFLSAATT-----THISLDHHSMTLTPDEVKSLLLKY 310
Query: 173 ---SEDELPAEFKLFLP 186
+LP E P
Sbjct: 311 LDCRPQDLPREVLTTNP 327
Score = 26.4 bits (57), Expect = 7.9
Identities = 16/92 (17%), Positives = 34/92 (36%), Gaps = 20/92 (21%)
Query: 80 IKNLKKYFTFEVQVLDDKNVRRRFRASNYQSTTRV------------KPFICTMPMRLDD 127
I++ ++ F + LD + + ++ R + KP+IC D
Sbjct: 484 IEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYIC----DNDP 539
Query: 128 GWNQIQFNLADFTRRAYGTNYI---ETLRVQI 156
+ ++ + DF + N I T ++I
Sbjct: 540 KYERLVNAILDFLPK-IEENLICSKYTDLLRI 570
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 36.1 bits (82), Expect = 0.003
Identities = 8/31 (25%), Positives = 18/31 (58%), Gaps = 5/31 (16%)
Query: 162 IRRVYFSDRLYSEDELPAEFKLFLPIQNKVK 192
++++ S +LY++D PA L I+ ++
Sbjct: 22 LKKLQASLKLYADDSAPA-----LAIKATME 47
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.2 bits (70), Expect = 0.22
Identities = 35/198 (17%), Positives = 54/198 (27%), Gaps = 93/198 (46%)
Query: 10 FLSILYSIGSK----------PLQIWDKKVRNGH--------IKRITDNDIQSLVLEIVG 51
+++L+ IG + P I + + N I +T +Q V +
Sbjct: 299 AITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNK--- 355
Query: 52 TNVSTTFISCPADPKKTLGIKLPFLVMIIKNLKKYFTFEVQVLDDKNVRRRFRASNYQST 111
TN PA K + I L N +
Sbjct: 356 TNSHL-----PAG--KQVEISL-----------------------VNGAKNL-------- 377
Query: 112 TRVKPFICTMPMRLDDGWNQIQFNLADFTRRAYGTNYIETLR-VQIHANCRIRRVYFSDR 170
V + P L YG N TLR + + R+ FS+R
Sbjct: 378 --V---VSGPPQSL------------------YGLN--LTLRKAKAPSGLDQSRIPFSER 412
Query: 171 LYSEDELPAEFKL-FLPI 187
+F FLP+
Sbjct: 413 -------KLKFSNRFLPV 423
Score = 29.6 bits (66), Expect = 0.76
Identities = 20/156 (12%), Positives = 36/156 (23%), Gaps = 79/156 (50%)
Query: 4 NTFQSGFLSILYSIGSKPLQIWDKKVRNGHIKRITDNDIQSLVLEIVGTNVSTTFISCPA 63
F++ +L NDI +L ++
Sbjct: 89 TEFENCYLE--------------------------GNDIHALAAKL------------LQ 110
Query: 64 DPKKTLGIKLPFLVMIIKNLKKYFTFEVQVLDDKNVRRR-----FRASN----------- 107
+ TL +IKN Y +++ + ++ FRA
Sbjct: 111 ENDTTLVKTK----ELIKN---Y--ITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFG 161
Query: 108 ---------------YQS-TTRVKPFICTMPMRLDD 127
YQ+ V I L +
Sbjct: 162 GQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSE 197
Score = 27.3 bits (60), Expect = 4.1
Identities = 16/90 (17%), Positives = 30/90 (33%), Gaps = 12/90 (13%)
Query: 63 ADP--KKTLGIKLPFLVMIIKNLKKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICT 120
AD K T G + + I+ N T K +R + A +++ K
Sbjct: 1649 ADNHFKDTYGFSI---LDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEK 1705
Query: 121 MPMRLDDGWNQIQF-------NLADFTRRA 143
+ +++ F + FT+ A
Sbjct: 1706 IFKEINEHSTSYTFRSEKGLLSATQFTQPA 1735
>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase,
GDP-gulose, GDP-galactose, keto intermediate, vitamin C,
SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP:
c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*
Length = 379
Score = 26.9 bits (60), Expect = 4.5
Identities = 11/59 (18%), Positives = 22/59 (37%), Gaps = 7/59 (11%)
Query: 9 GFLSILYSIGSKPLQIWDKKVRNGHIKRITDNDIQSLVLEIVGTNVSTTFISCPADPKK 67
G L + S +P+ I G + ++ N++ +VL + I P +
Sbjct: 256 GVLRLTKSDFREPVNI-------GSDEMVSMNEMAEMVLSFEEKKLPIHHIPGPEGVRG 307
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 26.6 bits (58), Expect = 5.7
Identities = 10/64 (15%), Positives = 20/64 (31%), Gaps = 15/64 (23%)
Query: 35 KRITDNDIQSLVLEIVGTNVSTTFISCPADPKKTLGIKLPFLVMIIKNLKKYFTFEVQVL 94
+ LV I+ +P + + I+LP I+ + +
Sbjct: 154 SDTKQKGKKFLV------------IA--YEPFENIAIELPPN-EILFSENNDMDNNNDGV 198
Query: 95 DDKN 98
D+ N
Sbjct: 199 DELN 202
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.140 0.418
Gapped
Lambda K H
0.267 0.0515 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,936,481
Number of extensions: 164358
Number of successful extensions: 451
Number of sequences better than 10.0: 1
Number of HSP's gapped: 447
Number of HSP's successfully gapped: 12
Length of query: 193
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 105
Effective length of database: 4,244,745
Effective search space: 445698225
Effective search space used: 445698225
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.5 bits)