RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13790
         (193 letters)



>d2pmaa1 b.50.1.3 (A:26-166) Uncharacterized protein LPG0085
           {Legionella pneumophila [TaxId: 446]}
          Length = 141

 Score = 27.2 bits (60), Expect = 0.92
 Identities = 16/86 (18%), Positives = 33/86 (38%), Gaps = 6/86 (6%)

Query: 80  IKNLKKYFTFEVQVLDDKNVRRRFRASNY--QSTTRVKPFICTMPMRLDDGWNQIQFNLA 137
           +      ++FE + +    ++ R   +N     TT +K  +  + ++L D    I+ NL 
Sbjct: 50  VPTKTGDYSFEGEYVGKVKIKVRSSETNPGLLRTTPIKRPVVLLNIKLGDKVRTIKVNLT 109

Query: 138 DFTRRAY----GTNYIETLRVQIHAN 159
           +  R  Y    G + I      +   
Sbjct: 110 NRKRFLYPLLLGRDAIIDFNGAVDPA 135


>d1v6ta_ c.6.2.5 (A:) Hypothetical protein PH0986 {Pyrococcus
           horikoshii [TaxId: 53953]}
          Length = 254

 Score = 26.8 bits (59), Expect = 1.8
 Identities = 5/33 (15%), Positives = 11/33 (33%)

Query: 143 AYGTNYIETLRVQIHANCRIRRVYFSDRLYSED 175
               +      +      ++    F+DR Y+ D
Sbjct: 141 LVTLSNSRVADIAEEMGLKVAHEVFADRAYNPD 173


>d2hzta1 a.4.5.69 (A:4-98) Putative transcriptional regulator YtcD
           {Bacillus subtilis [TaxId: 1423]}
          Length = 95

 Score = 24.2 bits (52), Expect = 6.1
 Identities = 9/38 (23%), Positives = 11/38 (28%)

Query: 150 ETLRVQIHANCRIRRVYFSDRLYSEDELPAEFKLFLPI 187
           + LR         R VY       E EL    +    I
Sbjct: 44  QQLRELEADGVINRIVYNQVPPKVEYELSEYGRSLEGI 81


>d2iu5a2 a.121.1.1 (A:72-180) Transcriptional activator DhaS
           {Lactococcus lactis [TaxId: 1358]}
          Length = 109

 Score = 24.2 bits (52), Expect = 6.3
 Identities = 13/44 (29%), Positives = 24/44 (54%)

Query: 76  LVMIIKNLKKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFIC 119
           + +I KN + +F  + + L DK +  + + S+Y  +   K FIC
Sbjct: 25  IFVIDKNFEHFFLIQWENLLDKVIFDQEKKSDYHWSDLEKSFIC 68


>d1gtma2 c.58.1.1 (A:3-180) Glutamate dehydrogenase {Archaeon
           Pyrococcus furiosus [TaxId: 2261]}
          Length = 178

 Score = 24.5 bits (53), Expect = 8.3
 Identities = 7/63 (11%), Positives = 19/63 (30%)

Query: 76  LVMIIKNLKKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICTMPMRLDDGWNQIQFN 135
            +  +K  ++     + V  D    + F     Q      P    +    ++  + ++  
Sbjct: 24  ALEFLKRPQRIVEVTIPVEMDDGSVKVFTGFRVQHNWARGPTKGGIRWHPEETLSTVKAL 83

Query: 136 LAD 138
            A 
Sbjct: 84  AAW 86


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.140    0.418 

Gapped
Lambda     K      H
   0.267   0.0575    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 736,597
Number of extensions: 33556
Number of successful extensions: 85
Number of sequences better than 10.0: 1
Number of HSP's gapped: 85
Number of HSP's successfully gapped: 9
Length of query: 193
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 112
Effective length of database: 1,295,466
Effective search space: 145092192
Effective search space used: 145092192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.4 bits)