BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13791
(90 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2F7F|A Chain A, Crystal Structure Of Enterococcus Faecalis Putative
Nicotinate Phosphoribosyltransferase, New York
Structural Genomics Consortium
Length = 494
Score = 76.6 bits (187), Expect = 3e-15, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
Query: 3 LMATNAARYRLAAGRNVSLLEFGLRRAQGPDGGLSASKYAYAGGFDGTSNVLAGKMYNIP 62
L+AT AAR + G + LLEFG RRAQ D + ++ AY GG D TSNV AGK++ IP
Sbjct: 140 LIATKAARIKSVIGDD-PLLEFGTRRAQELDAAIWGTRAAYIGGADATSNVRAGKIFGIP 198
Query: 63 VRGTHAHAYITSF 75
V GTHAH+ + S+
Sbjct: 199 VSGTHAHSLVQSY 211
>pdb|1YTD|A Chain A, Crystal Structure Of A Nicotinate
Phosphoribosyltransferase From Thermoplasma Acidophilum,
Native Structure
pdb|1YTE|A Chain A, Crystal Structure Of A Nicotinate
Phosphoribosyltransferase From Thermoplasma Acidophilum,
Phosphoribosylpyrophosphate Bound Structure
pdb|1YTK|A Chain A, Crystal Structure Of A Nicotinate
Phosphoribosyltransferase From Thermoplasma Acidophilum
With Nicotinate Mononucleotide
pdb|2I1O|A Chain A, Crystal Structure Of A Nicotinate
Phosphoribosyltransferase From Thermoplasma Acidophilum
Length = 398
Score = 41.6 bits (96), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 4 MATNAARYRLAAGRNVSLLEFGLRRAQGPDGGLSASKYAYAGGFDGTSNVLAGKMYNIPV 63
++T A++ RLAAG + FG+RR P + AY GG DG S +L K+ +
Sbjct: 125 ISTKASKVRLAAG-DSPFFSFGIRRMH-PAISPMIDRSAYIGGADGVSGILGAKLIDQDP 182
Query: 64 RGTHAHA 70
GT HA
Sbjct: 183 VGTMPHA 189
>pdb|2I14|A Chain A, Crystal Structure Of Nicotinate-Nucleotide
Pyrophosphorylase From Pyrococcus Furiosus
pdb|2I14|B Chain B, Crystal Structure Of Nicotinate-Nucleotide
Pyrophosphorylase From Pyrococcus Furiosus
pdb|2I14|C Chain C, Crystal Structure Of Nicotinate-Nucleotide
Pyrophosphorylase From Pyrococcus Furiosus
pdb|2I14|D Chain D, Crystal Structure Of Nicotinate-Nucleotide
Pyrophosphorylase From Pyrococcus Furiosus
pdb|2I14|E Chain E, Crystal Structure Of Nicotinate-Nucleotide
Pyrophosphorylase From Pyrococcus Furiosus
pdb|2I14|F Chain F, Crystal Structure Of Nicotinate-Nucleotide
Pyrophosphorylase From Pyrococcus Furiosus
Length = 395
Score = 34.7 bits (78), Expect = 0.013, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Query: 4 MATNAARYRLAAGRNVSLLEFGLRRAQGPDGGLSASKYAYAGGFDGTSNVLAGKMYNIPV 63
+AT A R ++AA + + FG+R P + A+ GG DG S VL +M
Sbjct: 121 IATAALRIKIAA-KFKPVYSFGIRHMH-PAIAPMIDRAAFIGGCDGVSGVLGAEMMGEKA 178
Query: 64 RGTHAHAYITS 74
GT HA I +
Sbjct: 179 VGTMPHALIIT 189
>pdb|1VLP|A Chain A, Crystal Structure Of A Putative Nicotinate
Phosphoribosyltransferase (Yor209c, Npt1) From
Saccharomyces Cerevisiae At 1.75 A Resolution
pdb|1VLP|B Chain B, Crystal Structure Of A Putative Nicotinate
Phosphoribosyltransferase (Yor209c, Npt1) From
Saccharomyces Cerevisiae At 1.75 A Resolution
pdb|1VLP|C Chain C, Crystal Structure Of A Putative Nicotinate
Phosphoribosyltransferase (Yor209c, Npt1) From
Saccharomyces Cerevisiae At 1.75 A Resolution
pdb|1VLP|D Chain D, Crystal Structure Of A Putative Nicotinate
Phosphoribosyltransferase (Yor209c, Npt1) From
Saccharomyces Cerevisiae At 1.75 A Resolution
Length = 441
Score = 27.7 bits (60), Expect = 1.5, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 49 GTSNVLAGKMYNIPVRGTHAHAYITSFNGLNE 80
GTSN+L K Y + GT AH ++ ++E
Sbjct: 224 GTSNILFAKKYGVKPIGTVAHEWVXGVASISE 255
>pdb|1YIR|A Chain A, Crystal Structure Of A Nicotinate
Phosphoribosyltransferase
pdb|1YIR|B Chain B, Crystal Structure Of A Nicotinate
Phosphoribosyltransferase
pdb|1YIR|C Chain C, Crystal Structure Of A Nicotinate
Phosphoribosyltransferase
pdb|1YIR|D Chain D, Crystal Structure Of A Nicotinate
Phosphoribosyltransferase
Length = 408
Score = 27.7 bits (60), Expect = 1.7, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 21 LLEFGLRRA---QGPDGGLSASKYAYAGGFDGTSNVLAGKMYNIPVRGTHAHAYITSFNG 77
+ +FG RR + + +S K + G F GTSNV + ++ GT AH ++ +
Sbjct: 175 MADFGTRRRFSYRVHEAVVSGLKEDFPGCFVGTSNVHLARKLDLKPLGTMAHEWLMAHQQ 234
Query: 78 L 78
L
Sbjct: 235 L 235
>pdb|2IM5|A Chain A, Crystal Structure Of Nicotinate Phosphoribosyltransferase
From Porphyromonas Gingivalis
pdb|2IM5|B Chain B, Crystal Structure Of Nicotinate Phosphoribosyltransferase
From Porphyromonas Gingivalis
pdb|2IM5|C Chain C, Crystal Structure Of Nicotinate Phosphoribosyltransferase
From Porphyromonas Gingivalis
pdb|2IM5|D Chain D, Crystal Structure Of Nicotinate Phosphoribosyltransferase
From Porphyromonas Gingivalis
Length = 394
Score = 26.9 bits (58), Expect = 2.8, Method: Composition-based stats.
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 43 YAG-GFDGTSNVLAGKMYNIPVRGTHAHAYITSFNG 77
YAG GTSNV + + V GTH H +I F+G
Sbjct: 186 YAGESLFGTSNVHLAHKHGLRVSGTHPHEWI-QFHG 220
>pdb|1YBE|A Chain A, Crystal Structure Of A Nicotinate
Phosphoribosyltransferase
pdb|1YBE|B Chain B, Crystal Structure Of A Nicotinate
Phosphoribosyltransferase
Length = 449
Score = 26.2 bits (56), Expect = 4.6, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 28/69 (40%), Gaps = 5/69 (7%)
Query: 4 MATNAARYRLAAGRNVSLLEFGLRRAQG---PDGGLSASKYAYAGGFDGTSNVLAGKMYN 60
M R R G +S +FG RR + A K F GTSNVL +
Sbjct: 183 MWEKVERLRELPGLRIS--DFGTRRRHSFLWQRWCVEALKEGIGPAFTGTSNVLLAMDSD 240
Query: 61 IPVRGTHAH 69
+ GT+AH
Sbjct: 241 LEAVGTNAH 249
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,612,709
Number of Sequences: 62578
Number of extensions: 99317
Number of successful extensions: 183
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 176
Number of HSP's gapped (non-prelim): 8
length of query: 90
length of database: 14,973,337
effective HSP length: 57
effective length of query: 33
effective length of database: 11,406,391
effective search space: 376410903
effective search space used: 376410903
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)