Query psy13791
Match_columns 90
No_of_seqs 105 out of 1088
Neff 5.5
Searched_HMMs 46136
Date Fri Aug 16 20:37:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13791.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13791hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01401 PncB_like Nicotinate p 100.0 8.4E-30 1.8E-34 200.2 8.2 75 2-77 143-225 (377)
2 PLN02885 nicotinate phosphorib 100.0 3.6E-29 7.9E-34 203.8 8.1 76 2-77 143-218 (545)
3 PRK12484 nicotinate phosphorib 100.0 7.2E-29 1.6E-33 197.9 8.1 83 2-85 132-214 (443)
4 PRK05321 nicotinate phosphorib 100.0 1.6E-28 3.6E-33 194.1 7.9 74 2-76 149-227 (400)
5 COG1488 PncB Nicotinic acid ph 100.0 2E-28 4.4E-33 193.6 8.0 84 2-85 140-227 (405)
6 TIGR01514 NAPRTase nicotinate 100.0 2.2E-28 4.8E-33 193.1 8.0 83 2-84 145-243 (394)
7 TIGR01513 NAPRTase_put putativ 99.9 3.1E-28 6.7E-33 194.4 8.1 83 2-85 129-211 (443)
8 PRK09243 nicotinate phosphorib 99.9 7.8E-28 1.7E-32 192.7 8.0 84 1-85 137-220 (464)
9 cd01570 NAPRTase_A Nicotinate 99.9 3.4E-27 7.5E-32 181.7 7.5 83 2-85 129-211 (327)
10 cd01567 NAPRTase_PncB Nicotina 99.9 1.7E-23 3.7E-28 160.8 7.6 81 1-82 127-220 (343)
11 PRK07188 nicotinate phosphorib 99.9 1.4E-22 3E-27 158.2 7.9 84 1-86 113-197 (352)
12 KOG2511|consensus 99.8 3E-22 6.6E-27 156.8 0.8 85 2-86 138-222 (420)
13 PF04095 NAPRTase: Nicotinate 99.8 5.6E-21 1.2E-25 142.0 3.8 62 19-81 1-65 (245)
14 cd01569 PBEF_like pre-B-cell c 99.8 2.4E-19 5.3E-24 142.4 7.3 84 2-86 142-248 (407)
15 PRK09198 putative nicotinate p 99.8 2.8E-19 6E-24 143.9 6.2 84 2-86 144-249 (463)
16 PHA02594 nadV nicotinamide pho 99.8 3.8E-19 8.2E-24 143.3 6.8 84 2-86 147-256 (470)
17 PRK08662 nicotinate phosphorib 99.8 5.6E-19 1.2E-23 137.3 7.3 82 1-84 111-192 (343)
18 cd01571 NAPRTase_B Nicotinate 99.7 3.6E-16 7.8E-21 119.6 8.1 85 1-87 94-182 (302)
19 cd00516 PRTase_typeII Phosphor 99.6 2.2E-15 4.7E-20 112.2 6.3 81 1-84 92-174 (281)
20 PF01729 QRPTase_C: Quinolinat 98.7 6.3E-08 1.4E-12 69.1 7.1 75 4-87 1-75 (169)
21 cd01568 QPRTase_NadC Quinolina 97.6 0.00011 2.3E-09 55.6 4.8 48 1-50 99-146 (269)
22 TIGR00078 nadC nicotinate-nucl 97.3 0.00054 1.2E-08 51.9 5.2 53 1-55 96-148 (265)
23 cd01573 modD_like ModD; Quinol 97.3 0.00061 1.3E-08 51.8 5.2 48 1-49 98-146 (272)
24 cd01572 QPRTase Quinolinate ph 96.9 0.0021 4.5E-08 48.8 4.9 46 1-48 100-145 (268)
25 PRK05848 nicotinate-nucleotide 96.7 0.0031 6.7E-08 48.2 4.7 45 1-47 100-144 (273)
26 PRK07896 nicotinate-nucleotide 96.3 0.0074 1.6E-07 46.6 4.6 44 1-46 118-161 (289)
27 PRK05742 nicotinate-nucleotide 96.2 0.0087 1.9E-07 45.9 4.6 50 1-52 108-157 (277)
28 PRK08385 nicotinate-nucleotide 95.3 0.034 7.5E-07 42.7 4.7 47 1-48 100-147 (278)
29 PRK09016 quinolinate phosphori 94.2 0.089 1.9E-06 40.9 4.6 44 1-46 127-170 (296)
30 PRK06106 nicotinate-nucleotide 93.8 0.11 2.5E-06 39.9 4.5 44 1-46 112-155 (281)
31 PRK07428 nicotinate-nucleotide 93.1 0.18 3.9E-06 38.9 4.6 45 1-47 114-158 (288)
32 PRK08072 nicotinate-nucleotide 92.6 0.25 5.3E-06 37.9 4.7 44 1-46 106-149 (277)
33 PLN02716 nicotinate-nucleotide 89.6 0.56 1.2E-05 36.8 4.1 42 1-46 120-161 (308)
34 PRK06559 nicotinate-nucleotide 88.4 0.88 1.9E-05 35.3 4.4 44 1-46 115-158 (290)
35 TIGR01334 modD putative molybd 83.1 2.4 5.2E-05 32.6 4.4 43 1-46 102-147 (277)
36 PRK06543 nicotinate-nucleotide 81.7 2.7 5.8E-05 32.5 4.3 44 1-46 107-150 (281)
37 PRK06978 nicotinate-nucleotide 76.0 5.3 0.00011 31.1 4.3 44 1-46 124-167 (294)
38 COG0157 NadC Nicotinate-nucleo 73.7 6.7 0.00014 30.6 4.3 44 1-46 106-149 (280)
39 PRK06096 molybdenum transport 66.3 11 0.00024 29.1 4.1 45 1-46 103-148 (284)
40 PF08696 Dna2: DNA replication 45.2 9.9 0.00021 27.7 0.8 13 63-75 92-104 (209)
41 KOG3008|consensus 44.4 28 0.00061 27.0 3.1 49 1-50 113-162 (300)
42 TIGR00246 tRNA_RlmH_YbeA rRNA 34.8 21 0.00046 25.1 1.1 33 42-75 99-134 (153)
43 COG0796 MurI Glutamate racemas 29.5 2E+02 0.0043 22.3 5.7 64 6-70 19-101 (269)
44 KOG2468|consensus 29.1 25 0.00054 29.5 0.8 38 50-87 348-385 (510)
45 PF02590 SPOUT_MTase: Predicte 27.7 26 0.00057 24.6 0.6 33 42-75 102-137 (155)
46 COG3737 Uncharacterized conser 25.0 1.1E+02 0.0025 21.2 3.3 55 5-61 57-113 (127)
47 PRK00103 rRNA large subunit me 25.0 36 0.00079 23.9 0.9 33 42-75 102-137 (157)
48 PF13693 HTH_35: Winged helix- 23.1 50 0.0011 21.0 1.2 39 35-76 3-41 (78)
49 TIGR01012 Sa_S2_E_A ribosomal 20.6 1.4E+02 0.0029 22.0 3.2 32 7-40 51-82 (196)
50 PF11592 AvrPto: Central core 20.6 50 0.0011 22.3 0.9 70 10-85 14-91 (105)
51 PHA01813 hypothetical protein 20.3 32 0.00069 20.7 -0.1 22 59-81 11-32 (58)
52 PTZ00254 40S ribosomal protein 20.3 1.6E+02 0.0035 22.5 3.7 33 7-40 60-92 (249)
No 1
>cd01401 PncB_like Nicotinate phosphoribosyltransferase (NAPRTase), related to PncB. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products. This subgroup is present in bacteria, archea and funghi.
Probab=99.96 E-value=8.4e-30 Score=200.23 Aligned_cols=75 Identities=27% Similarity=0.290 Sum_probs=70.8
Q ss_pred hhHHHHHHHHHHHh-----CCCCceeEecCCCCCChhh---HHHHHHHHhcCcchhhhhHHHHHhcCCCCccchhhHHHH
Q psy13791 2 LLMATNAARYRLAA-----GRNVSLLEFGLRRAQGPDG---GLSASKYAYAGGFDGTSNVLAGKMYNIPVRGTHAHAYIT 73 (90)
Q Consensus 2 s~iAtka~ri~~aA-----~~~~~v~~fG~RR~~~~~~---~~~~~raa~igG~~gtSnv~~a~~~gl~~~GTmaH~~iq 73 (90)
++|+||++||+.+| + +++|+|||+|||||+++ ++..+|++++|||+|||||++|++|||||+|||||||||
T Consensus 143 ~~~atKa~r~~~~a~~~~~~-~~~~~eFGtRRr~~~~~q~~~~~~~raa~~ggf~GTSNv~~a~~~gi~~~GTmAHe~v~ 221 (377)
T cd01401 143 EKLEEKLERLLEEAKRRDLN-GFRFSDFGTRRRFSYEVQETVLKGLKQAAPGYLTGTSNVHFAMKYGLTPIGTVAHEWFM 221 (377)
T ss_pred HHHHHHHHHHHHHhhcccCC-CCeEEEecccccCChHHHHHHHHHHHHHhhccCceehhHHHHHHcCCCCccchhHHHHH
Confidence 57999999999999 6 79999999999999877 688999999999999999999999999999999999999
Q ss_pred hhCC
Q psy13791 74 SFNG 77 (90)
Q Consensus 74 ~~~~ 77 (90)
+|++
T Consensus 222 ~~~~ 225 (377)
T cd01401 222 AHQA 225 (377)
T ss_pred Hhhc
Confidence 9984
No 2
>PLN02885 nicotinate phosphoribosyltransferase
Probab=99.96 E-value=3.6e-29 Score=203.83 Aligned_cols=76 Identities=70% Similarity=1.147 Sum_probs=73.0
Q ss_pred hhHHHHHHHHHHHhCCCCceeEecCCCCCChhhHHHHHHHHhcCcchhhhhHHHHHhcCCCCccchhhHHHHhhCC
Q psy13791 2 LLMATNAARYRLAAGRNVSLLEFGLRRAQGPDGGLSASKYAYAGGFDGTSNVLAGKMYNIPVRGTHAHAYITSFNG 77 (90)
Q Consensus 2 s~iAtka~ri~~aA~~~~~v~~fG~RR~~~~~~~~~~~raa~igG~~gtSnv~~a~~~gl~~~GTmaH~~iq~~~~ 77 (90)
|+||||++|++.+|+++++|+|||+||+|+++++..++|++|+|||+|||||+++++||||++|||||||||+|++
T Consensus 143 s~iAT~aar~~~aa~~~~~v~eFG~RRaqg~d~~~~~~raa~igGf~gTSNv~aa~~~gip~~GTmAHs~i~af~~ 218 (545)
T PLN02885 143 SLVATNAARHRLVAGKSKVLLEFGLRRAQGPDGGISASKYCYLGGFDATSNVEAGRLFGIPVRGTHSHAFVSSYMG 218 (545)
T ss_pred HHHHHHHHHHHHHhcCCCeEEECCCccCcCccHHHHHHHHHHhCCceeehHHHHHHhCCCCCccchHhHHHHhccc
Confidence 7899999999999865799999999999999999999999999999999999999999999999999999999974
No 3
>PRK12484 nicotinate phosphoribosyltransferase; Provisional
Probab=99.95 E-value=7.2e-29 Score=197.94 Aligned_cols=83 Identities=39% Similarity=0.591 Sum_probs=79.8
Q ss_pred hhHHHHHHHHHHHhCCCCceeEecCCCCCChhhHHHHHHHHhcCcchhhhhHHHHHhcCCCCccchhhHHHHhhCCHHHH
Q psy13791 2 LLMATNAARYRLAAGRNVSLLEFGLRRAQGPDGGLSASKYAYAGGFDGTSNVLAGKMYNIPVRGTHAHAYITSFNGLNEL 81 (90)
Q Consensus 2 s~iAtka~ri~~aA~~~~~v~~fG~RR~~~~~~~~~~~raa~igG~~gtSnv~~a~~~gl~~~GTmaH~~iq~~~~~~~a 81 (90)
|+||||++||+.+|+ +++|+|||+||+||++.+..++|++++|||+||||+++|++||+|++|||||||||+|++|.+|
T Consensus 132 s~iATka~ri~~aa~-~~~l~dFG~Rr~~~~~~a~~~~raa~i~gf~GTSnv~aa~~~gi~~~GTmaHs~i~a~~~e~~A 210 (443)
T PRK12484 132 SLIASKAARCVLAAA-GRPVVDFGARRAHGTDAACYVARASYLAGAAGTSNVLAARQYGIPASGTMAHSFVEAFPDEVAA 210 (443)
T ss_pred HHHHHHHHHHHHhcC-CCeEEECCCCCCCChHHHHHHHHHHHhcCcceeecHHHHHHCCCCceeeCHHHHHHhcccHHHH
Confidence 789999999999998 7999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhh
Q psy13791 82 QLKV 85 (90)
Q Consensus 82 ~~~~ 85 (90)
|...
T Consensus 211 f~~~ 214 (443)
T PRK12484 211 FRAF 214 (443)
T ss_pred HHHH
Confidence 8653
No 4
>PRK05321 nicotinate phosphoribosyltransferase; Provisional
Probab=99.95 E-value=1.6e-28 Score=194.11 Aligned_cols=74 Identities=23% Similarity=0.263 Sum_probs=68.3
Q ss_pred hhHHHHHHHHHHHhCC--CCceeEecCCCCCChhhH---HHHHHHHhcCcchhhhhHHHHHhcCCCCccchhhHHHHhhC
Q psy13791 2 LLMATNAARYRLAAGR--NVSLLEFGLRRAQGPDGG---LSASKYAYAGGFDGTSNVLAGKMYNIPVRGTHAHAYITSFN 76 (90)
Q Consensus 2 s~iAtka~ri~~aA~~--~~~v~~fG~RR~~~~~~~---~~~~raa~igG~~gtSnv~~a~~~gl~~~GTmaH~~iq~~~ 76 (90)
+.++||+.|++++ ++ +++|+|||+||+||++++ +.+++++++|||+|||||++|++|||||+|||||||||+|+
T Consensus 149 ~~iatKa~r~~~a-~~~~~~~~~eFGtRR~~~~~~~~~~v~a~~~~~~ggf~GTSNv~aa~~~gi~~~GTmAHe~v~~~~ 227 (400)
T PRK05321 149 RRLWEKIELLKAL-PDLSGFKIADFGTRRRFSFEWQEEVVEALKEGLPGAFVGTSNVHLAMKLGLTPIGTMAHEWFMAHQ 227 (400)
T ss_pred HHHHHHHHHHHhc-cccCCCeEEEeccccccChhhHHHHHHHHHHHhhcCCceehHHHHHHHcCCCCccchhhHHHHHHh
Confidence 5689999999887 31 699999999999998876 88899999999999999999999999999999999999996
No 5
>COG1488 PncB Nicotinic acid phosphoribosyltransferase [Coenzyme metabolism]
Probab=99.95 E-value=2e-28 Score=193.64 Aligned_cols=84 Identities=45% Similarity=0.590 Sum_probs=78.9
Q ss_pred hhHHHHHHHHHHHhCCCCceeEecCCCCCChhhHHHHHHHHhcCcchhhhhHHHHHhcCCCCccchhhHHHHhhC----C
Q psy13791 2 LLMATNAARYRLAAGRNVSLLEFGLRRAQGPDGGLSASKYAYAGGFDGTSNVLAGKMYNIPVRGTHAHAYITSFN----G 77 (90)
Q Consensus 2 s~iAtka~ri~~aA~~~~~v~~fG~RR~~~~~~~~~~~raa~igG~~gtSnv~~a~~~gl~~~GTmaH~~iq~~~----~ 77 (90)
|+|+||++|++.+|+++++|+|||+||+|+.+++..+.+++++|||+||||++++++||++|+|||||||||+|+ +
T Consensus 140 ~~iatka~r~~~~a~~~~~v~dFGtRr~~~~~~~~~~~raa~igg~~GtSnv~~a~~~g~~~~GTmaHa~i~~~~~~~~~ 219 (405)
T COG1488 140 SLIATKAARVKDAAGKGFPVLDFGTRRRHSADAQPWIGRAAYIGGFDGTSNVLAAKKYGIKPIGTMAHALIQAFGQLFGD 219 (405)
T ss_pred HHHHHHHHHHHHhhcCCCeEEeccCcccccchhHHHHHHHHHHhcccccchHHHHHHcCCCCcCcchhHHHHHhhcccch
Confidence 689999999999993379999999999999889999999999999999999999999999999999999999998 7
Q ss_pred HHHHHhhh
Q psy13791 78 LNELQLKV 85 (90)
Q Consensus 78 ~~~a~~~~ 85 (90)
+.+||+..
T Consensus 220 e~~A~~~~ 227 (405)
T COG1488 220 EVAAFRAW 227 (405)
T ss_pred HHHHHHHH
Confidence 99998654
No 6
>TIGR01514 NAPRTase nicotinate phosphoribosyltransferase. This model represents nicotinate phosphoribosyltransferase, the first enzyme in the salvage pathway of NAD biosynthesis from nicontinate (niacin). Members are primary proteobacterial but also include yeasts and Methanosarcina acetivorans. A related family, apparently non-overlapping in species distribution, is TIGR01513. Members of that family differ in substantially in sequence and have a long C-terminal extension missing from this family, but are proposed also to act as nicotinate phosphoribosyltransferase (see model TIGR01513).
Probab=99.95 E-value=2.2e-28 Score=193.12 Aligned_cols=83 Identities=20% Similarity=0.163 Sum_probs=73.1
Q ss_pred hhHHHHHHHHHHHhC------CCCceeEecCCCCCChhhHHH---HHHHHhcCcchhhhhHHHHHhcCCCCccchhhHHH
Q psy13791 2 LLMATNAARYRLAAG------RNVSLLEFGLRRAQGPDGGLS---ASKYAYAGGFDGTSNVLAGKMYNIPVRGTHAHAYI 72 (90)
Q Consensus 2 s~iAtka~ri~~aA~------~~~~v~~fG~RR~~~~~~~~~---~~raa~igG~~gtSnv~~a~~~gl~~~GTmaH~~i 72 (90)
+.++||+.||+.+++ .+++|+|||+|||||+++|.. .+|++++|||+|||||++|++|||||+||||||||
T Consensus 145 ~~iatKa~rl~~~a~~~~~~~~~~~~~eFGtRRr~s~~~q~~~~~~~r~a~~~gf~GTSNv~~a~~~gi~~~GTmaHe~v 224 (394)
T TIGR01514 145 EVLESKLDQLKAEIAAETMFENGFRFSEFGTRRRFSLEVQDLVTQGLKQAAPSWLLGTSNVHLAKKLGLKPIGTVAHEWF 224 (394)
T ss_pred HHHHHHHHHHHHHhhcccccCCCCeeEeecccccccHHHHHHHHHHHHHHhhccCceechHHHHHHcCCCCcccchHHHH
Confidence 569999999999883 269999999999999777654 47999999999999999999999999999999999
Q ss_pred HhhC-------CHHHHHhh
Q psy13791 73 TSFN-------GLNELQLK 84 (90)
Q Consensus 73 q~~~-------~~~~a~~~ 84 (90)
|+|+ ++.+||..
T Consensus 225 ~~~~~~~~~~~~e~~Af~~ 243 (394)
T TIGR01514 225 QGHQAISEYRNAQKVALEC 243 (394)
T ss_pred HHhcccccccccHHHHHHH
Confidence 9999 47776643
No 7
>TIGR01513 NAPRTase_put putative nicotinate phosphoribosyltransferase. Most members of this family are Gram-positive bacteria. An additional set of mutually closely related archaeal sequences score between the trusted and noise cutoffs.
Probab=99.95 E-value=3.1e-28 Score=194.40 Aligned_cols=83 Identities=58% Similarity=0.852 Sum_probs=79.4
Q ss_pred hhHHHHHHHHHHHhCCCCceeEecCCCCCChhhHHHHHHHHhcCcchhhhhHHHHHhcCCCCccchhhHHHHhhCCHHHH
Q psy13791 2 LLMATNAARYRLAAGRNVSLLEFGLRRAQGPDGGLSASKYAYAGGFDGTSNVLAGKMYNIPVRGTHAHAYITSFNGLNEL 81 (90)
Q Consensus 2 s~iAtka~ri~~aA~~~~~v~~fG~RR~~~~~~~~~~~raa~igG~~gtSnv~~a~~~gl~~~GTmaH~~iq~~~~~~~a 81 (90)
|+||||++||+.+++ +++++|||+||+|++++++.++|++++|||+||||++++++||+|++|||||||||+|++|.+|
T Consensus 129 s~iATka~r~~~aa~-~~~l~dFG~Rr~~~~~~~~~~~raa~igG~~GTSnv~aa~~~gi~~~GTmaHs~i~~~~~e~~A 207 (443)
T TIGR01513 129 TLIATKAARIVLAAG-GKPLLEFGLRRAQGPDAALKAARAAYIGGADGTSNVLAGRLYGIPVSGTMAHSFVMSFDNELAA 207 (443)
T ss_pred HHHHHHHHHHHHHcC-CCeEEecCCCCCCccHHHHHHHHHHHcCCceeechHHHHHhCCCCceEecHHHHHHhcccHHHH
Confidence 789999999999998 7999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhh
Q psy13791 82 QLKV 85 (90)
Q Consensus 82 ~~~~ 85 (90)
|...
T Consensus 208 f~~~ 211 (443)
T TIGR01513 208 FRAY 211 (443)
T ss_pred HHHH
Confidence 8654
No 8
>PRK09243 nicotinate phosphoribosyltransferase; Validated
Probab=99.95 E-value=7.8e-28 Score=192.74 Aligned_cols=84 Identities=55% Similarity=0.781 Sum_probs=80.2
Q ss_pred ChhHHHHHHHHHHHhCCCCceeEecCCCCCChhhHHHHHHHHhcCcchhhhhHHHHHhcCCCCccchhhHHHHhhCCHHH
Q psy13791 1 MLLMATNAARYRLAAGRNVSLLEFGLRRAQGPDGGLSASKYAYAGGFDGTSNVLAGKMYNIPVRGTHAHAYITSFNGLNE 80 (90)
Q Consensus 1 ~s~iAtka~ri~~aA~~~~~v~~fG~RR~~~~~~~~~~~raa~igG~~gtSnv~~a~~~gl~~~GTmaH~~iq~~~~~~~ 80 (90)
+|+||||++|++++++ +++|+|||+||+|+++.++.++|++++|||+||||++++++||+|++|||||+|||+|++|.+
T Consensus 137 ~s~iATka~r~~~~a~-~~~v~dFG~Rr~~~~~~a~~~~raa~iggf~gTSnv~aa~~ygi~~~GTmaHs~i~~~~~e~~ 215 (464)
T PRK09243 137 QTLIATKAARIVSAAG-GRPLLEFGSRRAQGPDAAVWAARAAYIGGFDATSNVLAGKRYGIPVSGTMAHSFVQAFDDEYE 215 (464)
T ss_pred HHHHHHHHHHHHHhcc-CCeEEecccccCCchHHHHHHHHHHhcCCccccccHHHHHHcCCCCcccchhHHHHhccCHHH
Confidence 3789999999999998 799999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhh
Q psy13791 81 LQLKV 85 (90)
Q Consensus 81 a~~~~ 85 (90)
||...
T Consensus 216 Af~~~ 220 (464)
T PRK09243 216 AFRAY 220 (464)
T ss_pred HHHHH
Confidence 99764
No 9
>cd01570 NAPRTase_A Nicotinate phosphoribosyltransferase (NAPRTase), subgroup A. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products. This subgroup is present in bacteria and eukaryota (except funghi).
Probab=99.94 E-value=3.4e-27 Score=181.74 Aligned_cols=83 Identities=61% Similarity=0.925 Sum_probs=78.5
Q ss_pred hhHHHHHHHHHHHhCCCCceeEecCCCCCChhhHHHHHHHHhcCcchhhhhHHHHHhcCCCCccchhhHHHHhhCCHHHH
Q psy13791 2 LLMATNAARYRLAAGRNVSLLEFGLRRAQGPDGGLSASKYAYAGGFDGTSNVLAGKMYNIPVRGTHAHAYITSFNGLNEL 81 (90)
Q Consensus 2 s~iAtka~ri~~aA~~~~~v~~fG~RR~~~~~~~~~~~raa~igG~~gtSnv~~a~~~gl~~~GTmaH~~iq~~~~~~~a 81 (90)
|+||||+++++++++ +++|+|||+||+|+.++++..++++++|||.||||++++++||+|++|||||||||+|+++.+|
T Consensus 129 s~iATka~~~~~~~~-~~~~~dFG~Rr~~s~~~~~~~~~aa~iggf~gTSnv~~a~~~g~~~~GT~aHs~i~~~~~e~~A 207 (327)
T cd01570 129 TLIATKAARVRLAAG-GRPLLEFGLRRAQGPDAALSAARAAYIGGFDGTSNVLAGKLYGIPVSGTMAHSFVQAFDDELAA 207 (327)
T ss_pred HHHHHHHHHHHHhcC-CCEEEECCCCCCCccHHHHHHHHHHhcCCceeeehHHHHHHcCCCcccccHHHHHHhhhhHHHH
Confidence 789999999999987 7999999999999998999999999999999999999999999999999999999999998888
Q ss_pred Hhhh
Q psy13791 82 QLKV 85 (90)
Q Consensus 82 ~~~~ 85 (90)
+...
T Consensus 208 ~~~~ 211 (327)
T cd01570 208 FRAF 211 (327)
T ss_pred HHHH
Confidence 7643
No 10
>cd01567 NAPRTase_PncB Nicotinate phosphoribosyltransferase (NAPRTase) family. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=99.89 E-value=1.7e-23 Score=160.84 Aligned_cols=81 Identities=44% Similarity=0.646 Sum_probs=75.5
Q ss_pred ChhHHHHHHHHHHHhCCC------------CceeEecCCCCCChhhHHHHHHHHhcCcchhhhhHHHHHhcCCCCccchh
Q psy13791 1 MLLMATNAARYRLAAGRN------------VSLLEFGLRRAQGPDGGLSASKYAYAGGFDGTSNVLAGKMYNIPVRGTHA 68 (90)
Q Consensus 1 ~s~iAtka~ri~~aA~~~------------~~v~~fG~RR~~~~~~~~~~~raa~igG~~gtSnv~~a~~~gl~~~GTma 68 (90)
+|++||++.+++++++ . +++.|||+||+++++.++.++++++++||.||||+++++++|++++||||
T Consensus 127 ~t~~at~~~~~~~~a~-~~~~~~~~~~~~~~~~~dFGtRr~~s~~~~~~~~~a~~~~~~~gtSn~~~a~~~~~~~iGT~~ 205 (343)
T cd01567 127 ATSIATKAARKKLAAG-GLLETKDNLEELGFKLHDFGTRRRHSPEAALSGGRAALIGGFGGTSNVAAAKKLGIPPIGTMA 205 (343)
T ss_pred HHHHHHHHHHHHHHHH-HHHhcccccccCCCeEEecCCCCcCChHHHHHHHHHHhcCCCCccHHHHHHHhcCCCccChHH
Confidence 4789999999999987 5 89999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhCC-HHHHH
Q psy13791 69 HAYITSFNG-LNELQ 82 (90)
Q Consensus 69 H~~iq~~~~-~~~a~ 82 (90)
|||||+|++ +.+++
T Consensus 206 Hs~i~a~~~~~~~~~ 220 (343)
T cd01567 206 HSWIQAFGALEEAAF 220 (343)
T ss_pred HHHHHHhhccHHHHH
Confidence 999999997 55554
No 11
>PRK07188 nicotinate phosphoribosyltransferase; Provisional
Probab=99.87 E-value=1.4e-22 Score=158.23 Aligned_cols=84 Identities=25% Similarity=0.184 Sum_probs=78.4
Q ss_pred ChhHHHHHHHHHHHhCCCCceeEecCCCCCChhhHHHHHHHHhcCcchhhhhHHHHHhcCCCCccchhhHHHHhhC-CHH
Q psy13791 1 MLLMATNAARYRLAAGRNVSLLEFGLRRAQGPDGGLSASKYAYAGGFDGTSNVLAGKMYNIPVRGTHAHAYITSFN-GLN 79 (90)
Q Consensus 1 ~s~iAtka~ri~~aA~~~~~v~~fG~RR~~~~~~~~~~~raa~igG~~gtSnv~~a~~~gl~~~GTmaH~~iq~~~-~~~ 79 (90)
+|+||||+++++++|+ ++++++|||||.| |..+..+.||+++||++++||++++..||+|++|||||+|||+|+ ++.
T Consensus 113 ~SgIAT~a~r~v~aA~-~~~~~~~gTRKt~-p~~~~~~~~Aa~igG~~~~s~~a~~~~~g~~~~GTmpH~li~~~~g~~~ 190 (352)
T PRK07188 113 RTSVATNAYNVVQAAN-EKPVIFMGDRADH-YLQQAGDGYAAYIGGISAFSTHAQNEWWGKSGFGTMPHALIQMFNGDVV 190 (352)
T ss_pred HHHHHHHHHHHHHHhC-CCCeEEEecCCCC-ccchhHhhHHhhcCCcHHHHHHHHHhcCCCCCcchHHHHHHHHCCCcHH
Confidence 5899999999999998 8999999999988 577888999999999999999999999999999999999999996 899
Q ss_pred HHHhhhc
Q psy13791 80 ELQLKVS 86 (90)
Q Consensus 80 ~a~~~~~ 86 (90)
+||.++.
T Consensus 191 ~A~~a~~ 197 (352)
T PRK07188 191 EACKAYH 197 (352)
T ss_pred HHHHHHH
Confidence 9996653
No 12
>KOG2511|consensus
Probab=99.84 E-value=3e-22 Score=156.85 Aligned_cols=85 Identities=46% Similarity=0.764 Sum_probs=78.9
Q ss_pred hhHHHHHHHHHHHhCCCCceeEecCCCCCChhhHHHHHHHHhcCcchhhhhHHHHHhcCCCCccchhhHHHHhhCCHHHH
Q psy13791 2 LLMATNAARYRLAAGRNVSLLEFGLRRAQGPDGGLSASKYAYAGGFDGTSNVLAGKMYNIPVRGTHAHAYITSFNGLNEL 81 (90)
Q Consensus 2 s~iAtka~ri~~aA~~~~~v~~fG~RR~~~~~~~~~~~raa~igG~~gtSnv~~a~~~gl~~~GTmaH~~iq~~~~~~~a 81 (90)
++++|++.+-++.+++.+.++|||+|||++|+..+.+.+..|+|||+|||||+++++||||+.||++|||+|.|.+..|-
T Consensus 138 ~~~~~da~~~r~~~g~k~~~leFG~RR~rgp~G~m~Askycy~ggf~~TSNV~~~k~ygip~~GT~aH~~v~~fas~~e~ 217 (420)
T KOG2511|consen 138 YFKFVDADWHREVQGEKAEFLEFGTRRRRGPQGAMKASKYCYLGGFLGTSNVLFAKKYGIPVRGTVAHEWVMGFASIDEI 217 (420)
T ss_pred HheeeccccchhccchhhHHhhhhhhhccCCccchhhhcccccccccchhHHHHHHHcCCCcccchhhhhhhhcccHHHH
Confidence 56789999999998877789999999999999999999999999999999999999999999999999999999988888
Q ss_pred Hhhhc
Q psy13791 82 QLKVS 86 (90)
Q Consensus 82 ~~~~~ 86 (90)
..+.+
T Consensus 218 ~~~~~ 222 (420)
T KOG2511|consen 218 YDKAN 222 (420)
T ss_pred HHHHH
Confidence 76654
No 13
>PF04095 NAPRTase: Nicotinate phosphoribosyltransferase (NAPRTase) family; InterPro: IPR015977 Nicotinate phosphoribosyltransferase (2.4.2.11 from EC) is the rate-limiting enzyme that catalyses the first reaction in the NAD salvage synthesis. This family also contains a number of closely related proteins for which a catalytic activity has not been experimentally demonstrated.; GO: 0004516 nicotinate phosphoribosyltransferase activity, 0009435 NAD biosynthetic process, 0005737 cytoplasm; PDB: 3OS4_B 1VLP_C 2F7F_A 1YIR_D 1YBE_B 2H3D_A 2H3B_B 2GVL_B 2IM5_B 2G96_B ....
Probab=99.82 E-value=5.6e-21 Score=142.05 Aligned_cols=62 Identities=47% Similarity=0.695 Sum_probs=51.4
Q ss_pred CceeEecCCCCCChhhHHHHHH---HHhcCcchhhhhHHHHHhcCCCCccchhhHHHHhhCCHHHH
Q psy13791 19 VSLLEFGLRRAQGPDGGLSASK---YAYAGGFDGTSNVLAGKMYNIPVRGTHAHAYITSFNGLNEL 81 (90)
Q Consensus 19 ~~v~~fG~RR~~~~~~~~~~~r---aa~igG~~gtSnv~~a~~~gl~~~GTmaH~~iq~~~~~~~a 81 (90)
++++|||+||+||++.+....+ +++++||.|||||+++++||||++|||+|+|+|+|+ ++++
T Consensus 1 ~~l~eFG~Rr~~s~~~~~~~~~~~~~a~~~gf~gTSnv~a~~~~~ip~~GT~aH~~~~~~~-e~~~ 65 (245)
T PF04095_consen 1 FRLHEFGTRRAHSFEAADLGGRALRAAYIGGFDGTSNVLAAMKYGIPAVGTMAHEWVMAFG-ELEA 65 (245)
T ss_dssp GSEEE-TTTTSSSHHHHHHHHHHHHHHHTTTEEEESBHHHHHHHT-EBE-HHHHHHHHHHH-HHHH
T ss_pred CceeecCCCCcCChHHHHHHHHHHHHhccCceeccChHHHHHhcCCCcccceeEEEeccch-hhhh
Confidence 3689999999998666655554 899999999999999999999999999999999996 5555
No 14
>cd01569 PBEF_like pre-B-cell colony-enhancing factor (PBEF)-like. The mammalian members of this group of nicotinate phosphoribosyltransferases (NAPRTases) were originally identified as genes whose expression is upregulated upon activation in lymphoid cells. In general, nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis.
Probab=99.79 E-value=2.4e-19 Score=142.42 Aligned_cols=84 Identities=21% Similarity=0.275 Sum_probs=77.2
Q ss_pred hhHHHHHHHHHHHhCC------------CCceeEecCCCCCChhhHHHHHHHHhcCcchhhhhHHH-----HHhcCCCCc
Q psy13791 2 LLMATNAARYRLAAGR------------NVSLLEFGLRRAQGPDGGLSASKYAYAGGFDGTSNVLA-----GKMYNIPVR 64 (90)
Q Consensus 2 s~iAtka~ri~~aA~~------------~~~v~~fG~RR~~~~~~~~~~~raa~igG~~gtSnv~~-----a~~~gl~~~ 64 (90)
|+|||||+||+++++. ++++.|||.||.|+++.....+ +++++||.||||+.+ ++.||+|..
T Consensus 142 s~vAT~A~r~k~~~~~~~~~t~~~~~~~~~~l~DFG~Rra~~~eaa~~~~-aAhL~~F~gTdtv~A~~~~~~~~yg~~~~ 220 (407)
T cd01569 142 STVATISREYKKILRKYAKETSDNLEFLPFQLHDFGMRGMSSLESAALGG-AAHLVNFKGTDTIPALDAAYAYYYEDPMA 220 (407)
T ss_pred HHHHHHHHHHHHHHHHHhhhcccccccCCCeEEecCCCCCCchHHHHHHH-HHHHcCCccchhhhhhhHHHHHhcCCCcc
Confidence 7899999999999952 6899999999999988888888 889999999999999 899999999
Q ss_pred cc----hhhHHHHhhC--CHHHHHhhhc
Q psy13791 65 GT----HAHAYITSFN--GLNELQLKVS 86 (90)
Q Consensus 65 GT----maH~~iq~~~--~~~~a~~~~~ 86 (90)
|| ++|+|||+|+ +|.||++...
T Consensus 221 G~sIPa~eHS~i~s~~~~~E~~AF~~~~ 248 (407)
T cd01569 221 GFSIPAAEHSTMTAWGRERELEAFRNLL 248 (407)
T ss_pred cccccHHHhHHHHhCCCccHHHHHHHHH
Confidence 99 9999999999 9999997654
No 15
>PRK09198 putative nicotinate phosphoribosyltransferase; Provisional
Probab=99.78 E-value=2.8e-19 Score=143.91 Aligned_cols=84 Identities=24% Similarity=0.272 Sum_probs=74.6
Q ss_pred hhHHHHHHHHHHHhCC------------CCceeEecCCCCCChhhHHHHHHHHhcCcchhhhhHHHH----HhcCCCCcc
Q psy13791 2 LLMATNAARYRLAAGR------------NVSLLEFGLRRAQGPDGGLSASKYAYAGGFDGTSNVLAG----KMYNIPVRG 65 (90)
Q Consensus 2 s~iAtka~ri~~aA~~------------~~~v~~fG~RR~~~~~~~~~~~raa~igG~~gtSnv~~a----~~~gl~~~G 65 (90)
|+|||||+||+.+++. ++++.|||+||.|+.+....+. +++++||.||||+.+. +.||+|..|
T Consensus 144 s~vAT~A~r~~~~~~~~~~~t~~~~~~~~~~l~dFG~Rr~~~~eaa~~~~-aA~l~gF~GTd~v~a~~~a~~~yg~~~~g 222 (463)
T PRK09198 144 STVATISWEYKQLIRQYLEKTADDLDFLPFQLHDFGARGMSSLESAALGG-AAHLVSFLGTDTIPALLYAERYYNADMAG 222 (463)
T ss_pred HHHHHHHHHHHHHHHHhhhhcccccccCCCeEEecCCCCCCchHHHHHHH-HHHHhCCCcccchhhhHHHHHhcCCCccc
Confidence 7899999999999752 6899999999999987777777 8999999999999999 899999777
Q ss_pred ----chhhHHHHhhC--CHHHHHhhhc
Q psy13791 66 ----THAHAYITSFN--GLNELQLKVS 86 (90)
Q Consensus 66 ----TmaH~~iq~~~--~~~~a~~~~~ 86 (90)
+++|+||++|+ +|.|||+...
T Consensus 223 ~siPa~~HS~i~~~g~~~E~eAf~~~~ 249 (463)
T PRK09198 223 FSIPATEHSVMTSWGREGELEAYRNMI 249 (463)
T ss_pred CCccccchhheeecCCccHHHHHHHHH
Confidence 66999999998 6999997543
No 16
>PHA02594 nadV nicotinamide phosphoribosyl transferase; Provisional
Probab=99.77 E-value=3.8e-19 Score=143.35 Aligned_cols=84 Identities=21% Similarity=0.271 Sum_probs=75.4
Q ss_pred hhHHHHHHHHHHHhC-------CC------CceeEecCCCCCChhhHHHHHHHHhcCcchhhhhHHH----HHhcC---C
Q psy13791 2 LLMATNAARYRLAAG-------RN------VSLLEFGLRRAQGPDGGLSASKYAYAGGFDGTSNVLA----GKMYN---I 61 (90)
Q Consensus 2 s~iAtka~ri~~aA~-------~~------~~v~~fG~RR~~~~~~~~~~~raa~igG~~gtSnv~~----a~~~g---l 61 (90)
|+|||||+||+++++ ++ .++.|||+||++|++..... ++++++||.||||+.+ ++.|| +
T Consensus 147 s~vAT~A~r~~~~~~~~~~~t~~~~~~~~~~~l~DFG~Rra~g~eaa~~~-~aAhl~gF~gTdtv~A~~~a~~~Yg~~~~ 225 (470)
T PHA02594 147 STVATLSRECKKILKKYLKETSDNEDEVLDFQLHDFGARGMSSGESAALG-GLAHLYNFKGTDTVEALYMAKRYYGDDEV 225 (470)
T ss_pred HHHHHHHHHHHHHHHHHhhhccCccccccCceeeeccCCCCCChHHHHHH-HHHHhcCCccccchhHHHHHHHHhCCccc
Confidence 789999999999975 23 58999999999998888777 8999999999999955 99999 9
Q ss_pred CCcc----chhhHHHHhhC--CHHHHHhhhc
Q psy13791 62 PVRG----THAHAYITSFN--GLNELQLKVS 86 (90)
Q Consensus 62 ~~~G----TmaH~~iq~~~--~~~~a~~~~~ 86 (90)
|..| ||+|+|||+|+ +|.+|++...
T Consensus 226 ~~~G~SIPa~eHS~~~s~~~~~E~~AF~~~~ 256 (470)
T PHA02594 226 EMAGISVPAREHSTMCSYGAENEDEAFKNSL 256 (470)
T ss_pred cccccccchhhhhhhhhcCCchHHHHHHHHH
Confidence 9999 99999999999 8999997654
No 17
>PRK08662 nicotinate phosphoribosyltransferase; Reviewed
Probab=99.77 E-value=5.6e-19 Score=137.33 Aligned_cols=82 Identities=37% Similarity=0.466 Sum_probs=75.4
Q ss_pred ChhHHHHHHHHHHHhCCCCceeEecCCCCCChhhHHHHHHHHhcCcchhhhhHHHHHhcCCCCccchhhHHHHhhCCHHH
Q psy13791 1 MLLMATNAARYRLAAGRNVSLLEFGLRRAQGPDGGLSASKYAYAGGFDGTSNVLAGKMYNIPVRGTHAHAYITSFNGLNE 80 (90)
Q Consensus 1 ~s~iAtka~ri~~aA~~~~~v~~fG~RR~~~~~~~~~~~raa~igG~~gtSnv~~a~~~gl~~~GTmaH~~iq~~~~~~~ 80 (90)
||+||||+++++++++ ++++.+||||+.+ |.......+|+++||+++|||++.+++++++|+|||||+||++|+++.+
T Consensus 111 ~SgIAT~t~~~v~aa~-~~~v~~~~TRKt~-Pg~r~l~k~Av~~GGg~~hs~~~~~~~~k~~~~gtm~H~~I~~fg~~~~ 188 (343)
T PRK08662 111 ASGIATAAARCKEAAG-DKPVLSFGARHVH-PAIAPMMDRAAYIGGCDGVSGVLGAELLGIEPSGTMPHALILIFGDQVE 188 (343)
T ss_pred HHHHHHHHHHHHHhcC-CCcEEEeccCCCC-HhHHHHHHhhhccccccccchHHHHHHcCCCCCcCcccHHHHHcCCHHH
Confidence 5899999999999998 7999999999987 5688889999999999999999999999999999999999999998876
Q ss_pred HHhh
Q psy13791 81 LQLK 84 (90)
Q Consensus 81 a~~~ 84 (90)
|..+
T Consensus 189 A~~~ 192 (343)
T PRK08662 189 AWKA 192 (343)
T ss_pred HHHH
Confidence 6543
No 18
>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=99.65 E-value=3.6e-16 Score=119.57 Aligned_cols=85 Identities=36% Similarity=0.481 Sum_probs=75.4
Q ss_pred ChhHHHHHHHHHHHhCCCCceeEecCCCCCChhhHHHHHHHHhcCcchhhhhHHHHHhcCCCCccchhhHHHHhhCC-HH
Q psy13791 1 MLLMATNAARYRLAAGRNVSLLEFGLRRAQGPDGGLSASKYAYAGGFDGTSNVLAGKMYNIPVRGTHAHAYITSFNG-LN 79 (90)
Q Consensus 1 ~s~iAtka~ri~~aA~~~~~v~~fG~RR~~~~~~~~~~~raa~igG~~gtSnv~~a~~~gl~~~GTmaH~~iq~~~~-~~ 79 (90)
||+|||++++++++++ +.++..||||+.+ |.......||+++||+.+++|.+..+.+.++++|||+|+|||+|++ +.
T Consensus 94 ~SgIAT~t~~~v~~~~-~~~~~i~~TRKt~-Pg~r~~~k~Av~~GGg~~hr~~l~d~~l~~~~~Gti~H~~I~~~g~~~~ 171 (302)
T cd01571 94 ASSIATNAARVKLAAG-DKPVISFGDRRDH-PAIQPMDGRAAYIGGCDGVSTVLGAELLGEKPSGTMPHALIQIFGGDQV 171 (302)
T ss_pred HHHHHHHHHHHHHHcC-CCcEEEeecccCC-cchhHHHHHHHHhcCccceehHHHHhhcCCCceechhhHHHHHcCchHH
Confidence 6899999999999998 6999999999987 5678889999999999999999999999999999999999999997 44
Q ss_pred ---HHHhhhcc
Q psy13791 80 ---ELQLKVSS 87 (90)
Q Consensus 80 ---~a~~~~~~ 87 (90)
++|++++.
T Consensus 172 ~A~~~~~~~~p 182 (302)
T cd01571 172 EAWKAFDETYP 182 (302)
T ss_pred HHHHHHHHHCC
Confidence 44455443
No 19
>cd00516 PRTase_typeII Phosphoribosyltransferase (PRTase) type II; This family contains two enzymes that play an important role in NAD production by either allowing quinolinic acid (QA) , quinolinate phosphoribosyl transferase (QAPRTase), or nicotinic acid (NA), nicotinate phosphoribosyltransferase (NAPRTase), to be used in the synthesis of NAD. QAPRTase catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide, an important step in the de novo synthesis of NAD. NAPRTase catalyses a similar reaction leading to NAMN and pyrophosphate, using nicotinic acid an PPRP as substrates, used in the NAD salvage pathway.
Probab=99.59 E-value=2.2e-15 Score=112.24 Aligned_cols=81 Identities=30% Similarity=0.310 Sum_probs=74.1
Q ss_pred ChhHHHHHHHHHHHhCCC--CceeEecCCCCCChhhHHHHHHHHhcCcchhhhhHHHHHhcCCCCccchhhHHHHhhCCH
Q psy13791 1 MLLMATNAARYRLAAGRN--VSLLEFGLRRAQGPDGGLSASKYAYAGGFDGTSNVLAGKMYNIPVRGTHAHAYITSFNGL 78 (90)
Q Consensus 1 ~s~iAtka~ri~~aA~~~--~~v~~fG~RR~~~~~~~~~~~raa~igG~~gtSnv~~a~~~gl~~~GTmaH~~iq~~~~~ 78 (90)
+|+|||++++++++++ + +++.+||||++++ .......+|..+||+.++||.+.++.++.++.|||+|+|+|+| ++
T Consensus 92 ~sgiAt~t~~~v~~~~-~~~~~~~~~gtRk~~p-~~~~~~~~A~~~gG~~~hr~~l~~~~l~~~~h~t~~h~~~~~~-~~ 168 (281)
T cd00516 92 LSGIATATARYVEAAK-GANTKVHDFGTRKTTP-GLRLLEKYAVLIGGGDGHRNGLSDAILIKDNHGTMAHSIIQAF-GE 168 (281)
T ss_pred HHHHHHHHHHHHHHhc-CCCCCeEEeecCCCCc-chhHHhhHHHhhccccccccchhhhhcCCCCeEecCcHHHHhc-CH
Confidence 5899999999999997 5 8999999999986 8999999999999999999999999999999999999999998 56
Q ss_pred HHHHhh
Q psy13791 79 NELQLK 84 (90)
Q Consensus 79 ~~a~~~ 84 (90)
.+++.+
T Consensus 169 ~~a~~~ 174 (281)
T cd00516 169 LAAVKA 174 (281)
T ss_pred HHHHHH
Confidence 666543
No 20
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=98.70 E-value=6.3e-08 Score=69.12 Aligned_cols=75 Identities=20% Similarity=0.113 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHhCCCCceeEecCCCCCChhhHHHHHHHHhcCcchhhhhHHHHHhcCCCCccchhhHHHHhhCCHHHHHh
Q psy13791 4 MATNAARYRLAAGRNVSLLEFGLRRAQGPDGGLSASKYAYAGGFDGTSNVLAGKMYNIPVRGTHAHAYITSFNGLNELQL 83 (90)
Q Consensus 4 iAtka~ri~~aA~~~~~v~~fG~RR~~~~~~~~~~~raa~igG~~gtSnv~~a~~~gl~~~GTmaH~~iq~~~~~~~a~~ 83 (90)
|||++++++++++ +.++.-++||..+ |.......+|.++||.. .+++|+...++++|..+.+|++..+++.
T Consensus 1 IAT~t~~~v~~a~-~~~~~i~~TRKt~-Pg~r~l~~~Av~~GGg~-------~hR~gl~d~ili~~nHi~~~g~i~~av~ 71 (169)
T PF01729_consen 1 IATATRRMVDAAK-GTKIRIADTRKTI-PGLRPLEKYAVLAGGGD-------NHRLGLSDMILIKDNHIAFFGGIEEAVK 71 (169)
T ss_dssp HHHHHHHHHHHTT-TSSSEEEEGSGS--TTTHHHHHHHHHHTTSB-------HHHSSTTSSEEE-HHHHHHHSSHHHHHH
T ss_pred ChhHHHHHHHHhC-CCCEEEeecCCCC-cccCHHHHHHHHhcCce-------eEECCCCCcEEehHHHHHHhCCHHHHHH
Confidence 8999999999998 6899999999766 78999999999999987 7789999999999999999999999997
Q ss_pred hhcc
Q psy13791 84 KVSS 87 (90)
Q Consensus 84 ~~~~ 87 (90)
+..+
T Consensus 72 ~~~~ 75 (169)
T PF01729_consen 72 AARQ 75 (169)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
No 21
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=97.60 E-value=0.00011 Score=55.59 Aligned_cols=48 Identities=27% Similarity=0.191 Sum_probs=42.3
Q ss_pred ChhHHHHHHHHHHHhCCCCceeEecCCCCCChhhHHHHHHHHhcCcchhh
Q psy13791 1 MLLMATNAARYRLAAGRNVSLLEFGLRRAQGPDGGLSASKYAYAGGFDGT 50 (90)
Q Consensus 1 ~s~iAtka~ri~~aA~~~~~v~~fG~RR~~~~~~~~~~~raa~igG~~gt 50 (90)
||+|||++++++++++ +.++..|+||+.+ |.......||..+||....
T Consensus 99 ~sgIAT~t~~~v~~a~-~~~~~i~~TRKt~-Pg~r~~~k~Av~~GGg~~h 146 (269)
T cd01568 99 LSGIATATRRYVEAAR-GTKARIADTRKTT-PGLRLLEKYAVRAGGGDNH 146 (269)
T ss_pred HHHHHHHHHHHHHHhC-CCCEEEeecCCCC-hhhHHHHHHHHHhCCCccc
Confidence 6899999999999998 6899999999876 6888999999999985543
No 22
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=97.28 E-value=0.00054 Score=51.93 Aligned_cols=53 Identities=23% Similarity=0.162 Sum_probs=45.0
Q ss_pred ChhHHHHHHHHHHHhCCCCceeEecCCCCCChhhHHHHHHHHhcCcchhhhhHHH
Q psy13791 1 MLLMATNAARYRLAAGRNVSLLEFGLRRAQGPDGGLSASKYAYAGGFDGTSNVLA 55 (90)
Q Consensus 1 ~s~iAtka~ri~~aA~~~~~v~~fG~RR~~~~~~~~~~~raa~igG~~gtSnv~~ 55 (90)
||+|||++++++++++ +.++.-++||..+ |......-||.+.||......-..
T Consensus 96 ~SGIAT~t~~~v~~~~-~~~~~i~~TRKt~-Pg~r~l~k~Av~~GGg~~HR~~L~ 148 (265)
T TIGR00078 96 LSGIATATRKYVEAAR-GTNVRIADTRKTT-PGLRLLEKYAVRVGGGDNHRLGLS 148 (265)
T ss_pred HHHHHHHHHHHHHHhc-CCCeEEEecCCCC-hhhhHHHHHHHHhcCCcccCCCcc
Confidence 6999999999999998 6889999999866 788899999999998766554443
No 23
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=97.25 E-value=0.00061 Score=51.75 Aligned_cols=48 Identities=29% Similarity=0.142 Sum_probs=40.2
Q ss_pred ChhHHHHHHHHHHHhC-CCCceeEecCCCCCChhhHHHHHHHHhcCcchh
Q psy13791 1 MLLMATNAARYRLAAG-RNVSLLEFGLRRAQGPDGGLSASKYAYAGGFDG 49 (90)
Q Consensus 1 ~s~iAtka~ri~~aA~-~~~~v~~fG~RR~~~~~~~~~~~raa~igG~~g 49 (90)
||+|||++++++++++ .+..+--++||+.+ |..-...-||.++||...
T Consensus 98 ~SGIAT~t~~~v~~~~~~~~~~~i~~TRKt~-Pg~r~~~k~Av~~GGg~~ 146 (272)
T cd01573 98 ASGIATATAEMVAAARAVNPDIVVATTRKAF-PGTRKLALKAILAGGAVP 146 (272)
T ss_pred HHHHHHHHHHHHHHHhhcCCCcEEEEeCCCC-ccchHHHHHHHHhcCccc
Confidence 6999999999999984 13456667799887 788899999999999776
No 24
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=96.86 E-value=0.0021 Score=48.78 Aligned_cols=46 Identities=24% Similarity=0.182 Sum_probs=40.7
Q ss_pred ChhHHHHHHHHHHHhCCCCceeEecCCCCCChhhHHHHHHHHhcCcch
Q psy13791 1 MLLMATNAARYRLAAGRNVSLLEFGLRRAQGPDGGLSASKYAYAGGFD 48 (90)
Q Consensus 1 ~s~iAtka~ri~~aA~~~~~v~~fG~RR~~~~~~~~~~~raa~igG~~ 48 (90)
||+|||++++++++++ +.++.-++||..+ |......-||..+||..
T Consensus 100 ~SGIAT~t~~~v~~a~-~~~~~i~~TRKt~-Pg~r~~~k~Av~~GGg~ 145 (268)
T cd01572 100 LSGIATLTRRYVEALA-GTKARILDTRKTT-PGLRLLEKYAVRCGGGD 145 (268)
T ss_pred HHHHHHHHHHHHHHhC-CCCEEEEeCCCCC-hhhHHHHHHHHHhCCCc
Confidence 6899999999999998 6899999999766 67888899999999755
No 25
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=96.68 E-value=0.0031 Score=48.22 Aligned_cols=45 Identities=20% Similarity=0.118 Sum_probs=40.4
Q ss_pred ChhHHHHHHHHHHHhCCCCceeEecCCCCCChhhHHHHHHHHhcCcc
Q psy13791 1 MLLMATNAARYRLAAGRNVSLLEFGLRRAQGPDGGLSASKYAYAGGF 47 (90)
Q Consensus 1 ~s~iAtka~ri~~aA~~~~~v~~fG~RR~~~~~~~~~~~raa~igG~ 47 (90)
||+|||++++++++++ +.++.-++||..+ |......-+|.++||.
T Consensus 100 ~SGIAT~t~~~v~~~~-~~~~~i~~TRKt~-Pg~r~~~k~Av~~GGg 144 (273)
T PRK05848 100 SSGIATLTSRYVEALE-SHKVKLLDTRKTR-PLLRIFEKYSVRNGGA 144 (273)
T ss_pred HHHHHHHHHHHHHHhc-CCCeEEEecCCCC-cchhHHHHHHHHhCCC
Confidence 6999999999999998 6899999999765 7888999999999985
No 26
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=96.27 E-value=0.0074 Score=46.63 Aligned_cols=44 Identities=18% Similarity=0.078 Sum_probs=39.1
Q ss_pred ChhHHHHHHHHHHHhCCCCceeEecCCCCCChhhHHHHHHHHhcCc
Q psy13791 1 MLLMATNAARYRLAAGRNVSLLEFGLRRAQGPDGGLSASKYAYAGG 46 (90)
Q Consensus 1 ~s~iAtka~ri~~aA~~~~~v~~fG~RR~~~~~~~~~~~raa~igG 46 (90)
||+|||+++++++++. +.++.-++||..+ |..-...-||..+||
T Consensus 118 ~SGIAT~t~~~v~~~~-~~~~~i~~TRKT~-Pg~R~l~k~AV~~GG 161 (289)
T PRK07896 118 LSGIATATAAWVDAVA-GTKAKIRDTRKTL-PGLRALQKYAVRCGG 161 (289)
T ss_pred HHHHHHHHHHHHHHhc-CCCeEEEecCCCC-CcchHHHHHHHHhCC
Confidence 6999999999999997 6888999999866 678888899999998
No 27
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=96.19 E-value=0.0087 Score=45.85 Aligned_cols=50 Identities=18% Similarity=0.165 Sum_probs=41.9
Q ss_pred ChhHHHHHHHHHHHhCCCCceeEecCCCCCChhhHHHHHHHHhcCcchhhhh
Q psy13791 1 MLLMATNAARYRLAAGRNVSLLEFGLRRAQGPDGGLSASKYAYAGGFDGTSN 52 (90)
Q Consensus 1 ~s~iAtka~ri~~aA~~~~~v~~fG~RR~~~~~~~~~~~raa~igG~~gtSn 52 (90)
||+|||+++++++++. +.++.-++||..+ |..-...-||..+||...+..
T Consensus 108 ~SGIAT~T~~~v~~~~-~~~~~i~~TRKt~-Pg~R~~~k~Av~~GGg~~HR~ 157 (277)
T PRK05742 108 LSGVATRARHYADLVA-GTQVKLLDTRKTL-PGLRLAQKYAVTCGGCHNHRI 157 (277)
T ss_pred HHHHHHHHHHHHHHhc-CCCeEEEecCCCC-CchhHHHHHHHHhcCCccccC
Confidence 6999999999999997 6788888999765 788888899999998655544
No 28
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=95.27 E-value=0.034 Score=42.69 Aligned_cols=47 Identities=23% Similarity=0.161 Sum_probs=39.4
Q ss_pred ChhHHHHHHHHHHHhC-CCCceeEecCCCCCChhhHHHHHHHHhcCcch
Q psy13791 1 MLLMATNAARYRLAAG-RNVSLLEFGLRRAQGPDGGLSASKYAYAGGFD 48 (90)
Q Consensus 1 ~s~iAtka~ri~~aA~-~~~~v~~fG~RR~~~~~~~~~~~raa~igG~~ 48 (90)
||+|||+++++++++. .+.++.-++||..+ |......-+|..+||..
T Consensus 100 ~SGIAT~T~~~v~~~~~~~~~~~i~~TRKt~-Pg~R~l~k~Av~~GGg~ 147 (278)
T PRK08385 100 MSGIATETRKLVELVKAVNPKVRVAGTRKTL-PGLRLLDKKAIIIGGGE 147 (278)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEEeCCCC-hhhhHHHHHHHHhcCCc
Confidence 6999999999999983 24778888999866 78888899999999755
No 29
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=94.22 E-value=0.089 Score=40.91 Aligned_cols=44 Identities=18% Similarity=0.165 Sum_probs=37.1
Q ss_pred ChhHHHHHHHHHHHhCCCCceeEecCCCCCChhhHHHHHHHHhcCc
Q psy13791 1 MLLMATNAARYRLAAGRNVSLLEFGLRRAQGPDGGLSASKYAYAGG 46 (90)
Q Consensus 1 ~s~iAtka~ri~~aA~~~~~v~~fG~RR~~~~~~~~~~~raa~igG 46 (90)
||+|||+++++++++. +.++.=++||... |..-...-+|..+||
T Consensus 127 ~SGIAT~T~~~v~~~~-~~~~~i~~TRKT~-Pg~R~l~k~AV~~GG 170 (296)
T PRK09016 127 LSGVATEVRRYVELLA-GTNTQLLDTRKTL-PGLRSALKYAVLCGG 170 (296)
T ss_pred HHHHHHHHHHHHHHhc-CCCeEEEecCCCC-CchhHHHHHHHHhcC
Confidence 6999999999999996 5777778899765 677778888888887
No 30
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=93.79 E-value=0.11 Score=39.95 Aligned_cols=44 Identities=20% Similarity=0.102 Sum_probs=38.0
Q ss_pred ChhHHHHHHHHHHHhCCCCceeEecCCCCCChhhHHHHHHHHhcCc
Q psy13791 1 MLLMATNAARYRLAAGRNVSLLEFGLRRAQGPDGGLSASKYAYAGG 46 (90)
Q Consensus 1 ~s~iAtka~ri~~aA~~~~~v~~fG~RR~~~~~~~~~~~raa~igG 46 (90)
||+|||++++++++++ +.++-=++||... |..-...-+|..+||
T Consensus 112 ~SGIAT~T~~~V~~~~-~~~~~i~~TRKT~-PG~R~l~k~AV~~GG 155 (281)
T PRK06106 112 LSGIATATASIVAAIA-GTKAKVVCTRKTT-PGLRALEKYAVRAGG 155 (281)
T ss_pred HHHHHHHHHHHHHHhc-CCCeEEEEeCCCC-CchhHHHHHHHHhcC
Confidence 6999999999999997 5788999999755 677778888888887
No 31
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=93.13 E-value=0.18 Score=38.92 Aligned_cols=45 Identities=18% Similarity=0.150 Sum_probs=38.0
Q ss_pred ChhHHHHHHHHHHHhCCCCceeEecCCCCCChhhHHHHHHHHhcCcc
Q psy13791 1 MLLMATNAARYRLAAGRNVSLLEFGLRRAQGPDGGLSASKYAYAGGF 47 (90)
Q Consensus 1 ~s~iAtka~ri~~aA~~~~~v~~fG~RR~~~~~~~~~~~raa~igG~ 47 (90)
||+|||+++++++++. +.++.=.+||... |..-...-||..+||.
T Consensus 114 ~SGIAT~T~~~v~~~~-~~~~~i~~TRKt~-Pg~R~l~k~AV~~GGg 158 (288)
T PRK07428 114 LSGIATLTRQYVEKIA-DLPTQLVDTRKTT-PGLRLLEKYATQVGGA 158 (288)
T ss_pred HHHHHHHHHHHHHHhc-CCCeEEEecCCCC-CcchHHHHHHHHhcCc
Confidence 6999999999999996 5778888999765 6777888888888873
No 32
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=92.63 E-value=0.25 Score=37.90 Aligned_cols=44 Identities=20% Similarity=0.170 Sum_probs=35.9
Q ss_pred ChhHHHHHHHHHHHhCCCCceeEecCCCCCChhhHHHHHHHHhcCc
Q psy13791 1 MLLMATNAARYRLAAGRNVSLLEFGLRRAQGPDGGLSASKYAYAGG 46 (90)
Q Consensus 1 ~s~iAtka~ri~~aA~~~~~v~~fG~RR~~~~~~~~~~~raa~igG 46 (90)
||+|||+++++++++. +.++-=.+||... |-.-...-+|...||
T Consensus 106 ~sGIAT~t~~~v~~~~-~~~~~i~~TRKt~-Pg~R~~~k~Av~~GG 149 (277)
T PRK08072 106 MSGIATMTRKAVLALD-DSHIRICDTRKTT-PGLRMFDKYAVVCGG 149 (277)
T ss_pred HHHHHHHHHHHHHHhc-CCCeEEEecCCCC-cchhHHHHHHHHhcC
Confidence 6999999999999997 5778889999765 666667777777775
No 33
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=89.62 E-value=0.56 Score=36.76 Aligned_cols=42 Identities=24% Similarity=0.180 Sum_probs=32.9
Q ss_pred ChhHHHHHHHHHHHhCCCCceeEecCCCCCChhhHHHHHHHHhcCc
Q psy13791 1 MLLMATNAARYRLAAGRNVSLLEFGLRRAQGPDGGLSASKYAYAGG 46 (90)
Q Consensus 1 ~s~iAtka~ri~~aA~~~~~v~~fG~RR~~~~~~~~~~~raa~igG 46 (90)
||+|||+.++++++++ +..| .+||... |-.-...-+|..+||
T Consensus 120 ~SGIAT~T~~~V~~~~-~~~I--~~TRKT~-PGlR~l~k~AV~~GG 161 (308)
T PLN02716 120 MSGIATLTKAMADAAK-PACI--LETRKTA-PGLRLVDKWAVLIGG 161 (308)
T ss_pred HHHHHHHHHHHHHHhC-cCEE--eeecCCC-CcchHHHHHHHHhcC
Confidence 6999999999999987 3444 4599765 667777778888886
No 34
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=88.40 E-value=0.88 Score=35.33 Aligned_cols=44 Identities=25% Similarity=0.292 Sum_probs=34.9
Q ss_pred ChhHHHHHHHHHHHhCCCCceeEecCCCCCChhhHHHHHHHHhcCc
Q psy13791 1 MLLMATNAARYRLAAGRNVSLLEFGLRRAQGPDGGLSASKYAYAGG 46 (90)
Q Consensus 1 ~s~iAtka~ri~~aA~~~~~v~~fG~RR~~~~~~~~~~~raa~igG 46 (90)
||+|||+.+++++++. +.++-=.+||-.. |-.-...-+|...||
T Consensus 115 ~SGIAT~T~~~V~~~~-~~~~~i~~TRKT~-PG~R~l~k~AV~~GG 158 (290)
T PRK06559 115 LSGIASMTAAYVEALG-DDRIKVFDTRKTT-PNLRLFEKYAVRVGG 158 (290)
T ss_pred HHHHHHHHHHHHHHhc-CCCeEEEeecCCC-CcchHHHHHHHHhcC
Confidence 6999999999999986 4556666999655 677777788888886
No 35
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=83.10 E-value=2.4 Score=32.58 Aligned_cols=43 Identities=23% Similarity=0.050 Sum_probs=31.6
Q ss_pred ChhHHHHHHHHHHHhC---CCCceeEecCCCCCChhhHHHHHHHHhcCc
Q psy13791 1 MLLMATNAARYRLAAG---RNVSLLEFGLRRAQGPDGGLSASKYAYAGG 46 (90)
Q Consensus 1 ~s~iAtka~ri~~aA~---~~~~v~~fG~RR~~~~~~~~~~~raa~igG 46 (90)
||+|||+.+++++++. .+..|++ ||-.. |..-...-+|...||
T Consensus 102 ~SGIAT~T~~~V~~~~~~~~~~~I~~--TRKT~-Pg~R~l~k~Av~~GG 147 (277)
T TIGR01334 102 SCGVATYTHKMVTLAKKISPMAVVAC--TRKAI-PLTRPLAVKAVLAAG 147 (277)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCEEEe--cCCCC-CChhHHHHHHHHhCC
Confidence 6999999999999884 2456665 88654 566666677777675
No 36
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=81.74 E-value=2.7 Score=32.48 Aligned_cols=44 Identities=20% Similarity=0.134 Sum_probs=32.6
Q ss_pred ChhHHHHHHHHHHHhCCCCceeEecCCCCCChhhHHHHHHHHhcCc
Q psy13791 1 MLLMATNAARYRLAAGRNVSLLEFGLRRAQGPDGGLSASKYAYAGG 46 (90)
Q Consensus 1 ~s~iAtka~ri~~aA~~~~~v~~fG~RR~~~~~~~~~~~raa~igG 46 (90)
||+|||+.++++++++ +.++-=-.||-.. |-.-...-+|...||
T Consensus 107 ~SGIAT~T~~~V~~~~-~~~~~i~~TRKT~-PG~R~l~k~AV~~GG 150 (281)
T PRK06543 107 MSGIATLTAAFVDAVN-GTRARIVDTRKTT-PGLRIFERYAVRCGG 150 (281)
T ss_pred HHHHHHHHHHHHHHhc-CCCCEEEeCCCCC-CcchHHHHHHHHhcC
Confidence 6999999999999987 3444445788544 666666777777775
No 37
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=75.96 E-value=5.3 Score=31.14 Aligned_cols=44 Identities=18% Similarity=0.176 Sum_probs=34.5
Q ss_pred ChhHHHHHHHHHHHhCCCCceeEecCCCCCChhhHHHHHHHHhcCc
Q psy13791 1 MLLMATNAARYRLAAGRNVSLLEFGLRRAQGPDGGLSASKYAYAGG 46 (90)
Q Consensus 1 ~s~iAtka~ri~~aA~~~~~v~~fG~RR~~~~~~~~~~~raa~igG 46 (90)
||+|||+.+++++++. +.++-=-+||-.. |..-...-+|...||
T Consensus 124 ~SGIAT~T~~~V~~~~-~~~~~I~dTRKT~-PGlR~lekyAV~~GG 167 (294)
T PRK06978 124 LSGVASATRRYVDRIA-GTRARILDTRKTL-PGLRLAQKYAVRVGG 167 (294)
T ss_pred HHHHHHHHHHHHHHhh-CCCcEEEecCCCC-CchhHHHHHHHHhcC
Confidence 6999999999999986 5666667899755 666666777777776
No 38
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=73.68 E-value=6.7 Score=30.56 Aligned_cols=44 Identities=25% Similarity=0.175 Sum_probs=35.1
Q ss_pred ChhHHHHHHHHHHHhCCCCceeEecCCCCCChhhHHHHHHHHhcCc
Q psy13791 1 MLLMATNAARYRLAAGRNVSLLEFGLRRAQGPDGGLSASKYAYAGG 46 (90)
Q Consensus 1 ~s~iAtka~ri~~aA~~~~~v~~fG~RR~~~~~~~~~~~raa~igG 46 (90)
||+|||..++++++++ +.++-=-.||-.. |-.-.-.-+|..+||
T Consensus 106 lSGIAT~T~~~V~~~~-~~~~~i~~TRKT~-PglR~leKyAV~~GG 149 (280)
T COG0157 106 LSGIATATARMVEALR-GTNVRIADTRKTT-PGLRLLEKYAVRAGG 149 (280)
T ss_pred HhhHHHHHHHHHHHhh-ccCcEEEeccCCC-ccHHHHHHHHHHhcC
Confidence 6999999999999998 6788888899755 555556666667776
No 39
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=66.27 E-value=11 Score=29.13 Aligned_cols=45 Identities=18% Similarity=0.002 Sum_probs=31.7
Q ss_pred ChhHHHHHHHHHHHhCC-CCceeEecCCCCCChhhHHHHHHHHhcCc
Q psy13791 1 MLLMATNAARYRLAAGR-NVSLLEFGLRRAQGPDGGLSASKYAYAGG 46 (90)
Q Consensus 1 ~s~iAtka~ri~~aA~~-~~~v~~fG~RR~~~~~~~~~~~raa~igG 46 (90)
||+|||+.++++++++. +.++-=..||-.. |..-...-+|...||
T Consensus 103 ~SGIAT~T~~~V~~~~~~~~~~~I~~TRKT~-Pg~R~l~k~AV~~GG 148 (284)
T PRK06096 103 SCGVSDYLAQMLALLRERYPDGNIACTRKAI-PGTRLLATQAVLAAG 148 (284)
T ss_pred HHHHHHHHHHHHHHHHhhCCCcEEEecCcCC-CchhHHHHHHHHcCC
Confidence 69999999999998731 2234444578644 566667777777886
No 40
>PF08696 Dna2: DNA replication factor Dna2; InterPro: IPR014808 Dna2 is a DNA replication factor with single-stranded DNA-dependent ATPase, ATP-dependent nuclease, (5'-flap endonuclease) and helicase activities. It is required for Okazaki fragment processing and is involved in DNA repair pathways []. ; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication
Probab=45.21 E-value=9.9 Score=27.70 Aligned_cols=13 Identities=23% Similarity=0.289 Sum_probs=11.5
Q ss_pred CccchhhHHHHhh
Q psy13791 63 VRGTHAHAYITSF 75 (90)
Q Consensus 63 ~~GTmaH~~iq~~ 75 (90)
.+|||-||++|..
T Consensus 92 l~GtIvHelfQ~~ 104 (209)
T PF08696_consen 92 LIGTIVHELFQKA 104 (209)
T ss_pred eeeeeHHHHHHHH
Confidence 4899999999975
No 41
>KOG3008|consensus
Probab=44.36 E-value=28 Score=27.03 Aligned_cols=49 Identities=24% Similarity=0.070 Sum_probs=34.4
Q ss_pred ChhHHHHHHHHHHHhCC-CCceeEecCCCCCChhhHHHHHHHHhcCcchhh
Q psy13791 1 MLLMATNAARYRLAAGR-NVSLLEFGLRRAQGPDGGLSASKYAYAGGFDGT 50 (90)
Q Consensus 1 ~s~iAtka~ri~~aA~~-~~~v~~fG~RR~~~~~~~~~~~raa~igG~~gt 50 (90)
||.|||.+..++++|.. |-+--=-|||..- |-.-...-++..+||++..
T Consensus 113 ~SGIATa~~~~~~aAr~~g~~g~IagTRKTt-PGLRlveKy~~LvGG~~~H 162 (300)
T KOG3008|consen 113 CSGIATAAAAAVEAARGAGWTGHIAGTRKTT-PGLRLVEKYGLLVGGAASH 162 (300)
T ss_pred hccHHHHHHHHHHHHhcCCCcceecccccCC-cchhhhhhhceeecccccc
Confidence 79999999999999851 2233445888643 5555566677788887654
No 42
>TIGR00246 tRNA_RlmH_YbeA rRNA large subunit m3Psi methyltransferase RlmH. This protein, in the SPOUT methyltransferase family, previously designated YbeA in E. coli, was shown to be responsible for a further modification, a methylation, to a pseudouridine base in ribosomal large subunit RNA.
Probab=34.84 E-value=21 Score=25.06 Aligned_cols=33 Identities=18% Similarity=0.290 Sum_probs=23.2
Q ss_pred HhcCcchhhhhHHHHHh---cCCCCccchhhHHHHhh
Q psy13791 42 AYAGGFDGTSNVLAGKM---YNIPVRGTHAHAYITSF 75 (90)
Q Consensus 42 a~igG~~gtSnv~~a~~---~gl~~~GTmaH~~iq~~ 75 (90)
.+|||..|.|+-...+- +.+-++ |+||++.-..
T Consensus 99 FvIGGa~G~~~~v~~~a~~~lSLS~m-TfpH~larlv 134 (153)
T TIGR00246 99 LLIGGPEGLSPTCKAAAEQSWSLSKL-TLPHPLVRVI 134 (153)
T ss_pred EEEcCCCcCCHHHHHhcCceEEeecC-CCcHHHHHHH
Confidence 36899999998876654 333333 8999987654
No 43
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=29.54 E-value=2e+02 Score=22.27 Aligned_cols=64 Identities=13% Similarity=0.031 Sum_probs=38.7
Q ss_pred HHHHHHHHHhCCCCceeEecCCCCCCh-----hhHHHHHHH-------HhcC----cchhhhhHHHHH---hcCCCCccc
Q psy13791 6 TNAARYRLAAGRNVSLLEFGLRRAQGP-----DGGLSASKY-------AYAG----GFDGTSNVLAGK---MYNIPVRGT 66 (90)
Q Consensus 6 tka~ri~~aA~~~~~v~~fG~RR~~~~-----~~~~~~~ra-------a~ig----G~~gtSnv~~a~---~~gl~~~GT 66 (90)
|-.+.+++.-+ +..++++|+..+.-+ +....-... -++. -|.--|.+.+.. +|++|.+|+
T Consensus 19 sVlrei~~~LP-~e~~iY~~D~a~~PYG~ks~e~I~~~~~~i~~~l~~~~ik~lVIACNTASa~al~~LR~~~~iPVvGv 97 (269)
T COG0796 19 SVLREIRRQLP-DEDIIYVGDTARFPYGEKSEEEIRERTLEIVDFLLERGIKALVIACNTASAVALEDLREKFDIPVVGV 97 (269)
T ss_pred HHHHHHHHHCC-CCcEEEEecCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCCEEEEecchHHHHHHHHHHHhCCCCEEEe
Confidence 55677777777 699999999976542 111111111 1111 255555555544 489999999
Q ss_pred hhhH
Q psy13791 67 HAHA 70 (90)
Q Consensus 67 maH~ 70 (90)
+|..
T Consensus 98 iPai 101 (269)
T COG0796 98 IPAI 101 (269)
T ss_pred ccch
Confidence 9864
No 44
>KOG2468|consensus
Probab=29.11 E-value=25 Score=29.55 Aligned_cols=38 Identities=16% Similarity=0.186 Sum_probs=30.3
Q ss_pred hhhHHHHHhcCCCCccchhhHHHHhhCCHHHHHhhhcc
Q psy13791 50 TSNVLAGKMYNIPVRGTHAHAYITSFNGLNELQLKVSS 87 (90)
Q Consensus 50 tSnv~~a~~~gl~~~GTmaH~~iq~~~~~~~a~~~~~~ 87 (90)
+--++.-|.++|||.|.+-|++.-.|-|+.|+-+...+
T Consensus 348 Fl~lE~IR~~ri~PlG~~l~~fl~~F~DeRDsGpLIiS 385 (510)
T KOG2468|consen 348 FLFLEYIRFLRIPPLGSALHLFLSRFTDERDSGPLIIS 385 (510)
T ss_pred HHHHHHHHHhcCCCchHHHHHHHHHhcccccCCceeHH
Confidence 33455667799999999999999999999887655443
No 45
>PF02590 SPOUT_MTase: Predicted SPOUT methyltransferase; InterPro: IPR003742 This family of proteins are predicted to be SPOUT methyltransferases []. ; GO: 0008168 methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1VH0_E 4FAK_A 1TO0_G 1O6D_A 1NS5_B.
Probab=27.65 E-value=26 Score=24.57 Aligned_cols=33 Identities=21% Similarity=0.270 Sum_probs=16.9
Q ss_pred HhcCcchhhhhHHHHHh---cCCCCccchhhHHHHhh
Q psy13791 42 AYAGGFDGTSNVLAGKM---YNIPVRGTHAHAYITSF 75 (90)
Q Consensus 42 a~igG~~gtSnv~~a~~---~gl~~~GTmaH~~iq~~ 75 (90)
.+|||-.|.|+-...+- +.+-++ |+||++.-..
T Consensus 102 F~IGG~~G~~~~~~~~a~~~lSLS~m-TfpH~larlv 137 (155)
T PF02590_consen 102 FIIGGADGLSEEVRKRADEKLSLSKM-TFPHQLARLV 137 (155)
T ss_dssp EEE-BTTB--HHHHHH-SEEEES-SS----HHHHHHH
T ss_pred EEEecCCCCCHHHHhhcCceEEEecC-CCcHHHHHHH
Confidence 45899999998776654 334333 8999997654
No 46
>COG3737 Uncharacterized conserved protein [Function unknown]
Probab=25.03 E-value=1.1e+02 Score=21.22 Aligned_cols=55 Identities=24% Similarity=0.164 Sum_probs=35.3
Q ss_pred HHHHHHHHHHhCCCCceeEecCCCCCC--hhhHHHHHHHHhcCcchhhhhHHHHHhcCC
Q psy13791 5 ATNAARYRLAAGRNVSLLEFGLRRAQG--PDGGLSASKYAYAGGFDGTSNVLAGKMYNI 61 (90)
Q Consensus 5 Atka~ri~~aA~~~~~v~~fG~RR~~~--~~~~~~~~raa~igG~~gtSnv~~a~~~gl 61 (90)
.++-.++++.|+ +..|+=+||-.++- |.-...+.++.-|+ ..=-||-++.+-||+
T Consensus 57 ~e~f~~vl~~a~-~~EilliGTG~~~rf~p~~l~aal~~~gIs-ve~Mst~AA~RTYNv 113 (127)
T COG3737 57 PEDFERVLAEAP-DVEILLIGTGARLRFPPPKLRAALKAAGIS-VEPMSTGAAVRTYNV 113 (127)
T ss_pred HHHHHHHHhcCC-CceEEEEecCccccCCCHHHHHHHHHcCCc-cccccchhhHHHHHH
Confidence 466677888777 56777777665544 44445555555553 666677777777764
No 47
>PRK00103 rRNA large subunit methyltransferase; Provisional
Probab=25.01 E-value=36 Score=23.93 Aligned_cols=33 Identities=21% Similarity=0.317 Sum_probs=22.7
Q ss_pred HhcCcchhhhhHHHHHh---cCCCCccchhhHHHHhh
Q psy13791 42 AYAGGFDGTSNVLAGKM---YNIPVRGTHAHAYITSF 75 (90)
Q Consensus 42 a~igG~~gtSnv~~a~~---~gl~~~GTmaH~~iq~~ 75 (90)
-+|||..|.|.-...+- +.+-++ |+||++.-..
T Consensus 102 F~IGGa~G~~~~v~~~a~~~lSLS~m-TfpH~larlv 137 (157)
T PRK00103 102 FVIGGADGLSPAVKKRADQSLSLSKL-TLPHQLVRVL 137 (157)
T ss_pred EEEcCccccCHHHHHhcCceEEeccC-CCcHHHHHHH
Confidence 35899999988776543 333333 8999987654
No 48
>PF13693 HTH_35: Winged helix-turn-helix DNA-binding; PDB: 1NEQ_A 1NER_A.
Probab=23.10 E-value=50 Score=20.95 Aligned_cols=39 Identities=18% Similarity=0.059 Sum_probs=24.5
Q ss_pred HHHHHHHHhcCcchhhhhHHHHHhcCCCCccchhhHHHHhhC
Q psy13791 35 GLSASKYAYAGGFDGTSNVLAGKMYNIPVRGTHAHAYITSFN 76 (90)
Q Consensus 35 ~~~~~raa~igG~~gtSnv~~a~~~gl~~~GTmaH~~iq~~~ 76 (90)
...+-+|++- -.|+|--.+++.+|+.+ +|+..+|...+.
T Consensus 3 h~adI~AaL~--krG~sL~~lsr~~Gl~~-~tl~nal~r~~p 41 (78)
T PF13693_consen 3 HRADIKAALR--KRGTSLAALSREAGLSS-STLRNALRRPWP 41 (78)
T ss_dssp -HHHHHHHHC--TTS--HHHHHHHHSS-H-HHHHHTTTSS-H
T ss_pred CHHHHHHHHH--HcCCCHHHHHHHcCCCH-HHHHHHHcCCCh
Confidence 3445555543 46788889999999987 888888776653
No 49
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=20.64 E-value=1.4e+02 Score=21.95 Aligned_cols=32 Identities=22% Similarity=0.188 Sum_probs=18.8
Q ss_pred HHHHHHHHhCCCCceeEecCCCCCChhhHHHHHH
Q psy13791 7 NAARYRLAAGRNVSLLEFGLRRAQGPDGGLSASK 40 (90)
Q Consensus 7 ka~ri~~aA~~~~~v~~fG~RR~~~~~~~~~~~r 40 (90)
+|++++.... +..|+..|+|+. ........+.
T Consensus 51 ~A~~~i~~i~-~~~ILfVgtk~~-~~~~V~~~A~ 82 (196)
T TIGR01012 51 VAAKFLVRIE-PEDILVVSARIY-GQKPVLKFAK 82 (196)
T ss_pred HHHHHHHHhh-CCeEEEEecCHH-HHHHHHHHHH
Confidence 3444544444 579999999973 3344444433
No 50
>PF11592 AvrPto: Central core of the bacterial effector protein AvrPto; InterPro: IPR020996 This entry represents the bacterial effector protein AvrPto, from Pseudomonas syringae and in particular the central core region of the protein that consists of a three-helix bundle motif. AvrPto is part of a type III secretion system from P.syringae which is involved in the bacterial speck disease of tomato. In resistant plants, AvrPto interacts with the host Pto kinase, which elicits an antibacterial defence response. In plants lacking resistance, the Pto kinase is not present and AvrPto acts as a virulence factor, promoting bacterial growth []. ; PDB: 1R5E_A 2QKW_A.
Probab=20.61 E-value=50 Score=22.27 Aligned_cols=70 Identities=17% Similarity=0.049 Sum_probs=40.2
Q ss_pred HHHHHhCCCCceeEecCCCCCChhhHHHHHHHHhcCcchhhhhHHHHHh--------cCCCCccchhhHHHHhhCCHHHH
Q psy13791 10 RYRLAAGRNVSLLEFGLRRAQGPDGGLSASKYAYAGGFDGTSNVLAGKM--------YNIPVRGTHAHAYITSFNGLNEL 81 (90)
Q Consensus 10 ri~~aA~~~~~v~~fG~RR~~~~~~~~~~~raa~igG~~gtSnv~~a~~--------~gl~~~GTmaH~~iq~~~~~~~a 81 (90)
++.++|+-..+.-+|=.+.+ +..+|.-|-+-+.-|=|+..+-- ..-.-.||-||+.|+...+-.-+
T Consensus 14 ~LaeaagLpr~qh~Fi~n~a------p~sLR~~yn~L~r~Tq~~l~~Adi~HR~mtg~s~~~~g~~~~e~V~~m~s~is~ 87 (105)
T PF11592_consen 14 QLAEAAGLPREQHAFINNEA------PQSLRDRYNNLYRRTQRTLDMADIQHRYMTGDSGVNPGTTPHENVNSMRSAISA 87 (105)
T ss_dssp HHHHHSS--CHHHCCCTTTS-------CCHHHHHHHHHHHHHHHHHHHCCCHCCCTTSSCECSSS-HHHHHHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHccCC------CHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHHHH
Confidence 45666653345555554431 23344444444555555554422 13455899999999999999999
Q ss_pred Hhhh
Q psy13791 82 QLKV 85 (90)
Q Consensus 82 ~~~~ 85 (90)
|...
T Consensus 88 W~dM 91 (105)
T PF11592_consen 88 WSDM 91 (105)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9543
No 51
>PHA01813 hypothetical protein
Probab=20.34 E-value=32 Score=20.70 Aligned_cols=22 Identities=23% Similarity=0.437 Sum_probs=16.1
Q ss_pred cCCCCccchhhHHHHhhCCHHHH
Q psy13791 59 YNIPVRGTHAHAYITSFNGLNEL 81 (90)
Q Consensus 59 ~gl~~~GTmaH~~iq~~~~~~~a 81 (90)
|+...-||-||+.-| |++..++
T Consensus 11 y~~~i~~~~~h~i~~-fe~~~~~ 32 (58)
T PHA01813 11 YCDEIKGHFPHQISM-FEDLYDA 32 (58)
T ss_pred EehhhcccChhHHHH-HHhhhce
Confidence 667788999999888 4544443
No 52
>PTZ00254 40S ribosomal protein SA; Provisional
Probab=20.30 E-value=1.6e+02 Score=22.46 Aligned_cols=33 Identities=21% Similarity=0.128 Sum_probs=19.7
Q ss_pred HHHHHHHHhCCCCceeEecCCCCCChhhHHHHHH
Q psy13791 7 NAARYRLAAGRNVSLLEFGLRRAQGPDGGLSASK 40 (90)
Q Consensus 7 ka~ri~~aA~~~~~v~~fG~RR~~~~~~~~~~~r 40 (90)
+|++++....++..|+.+|+|+ +++..+...+.
T Consensus 60 ~Aa~~i~~i~~~~~Il~Vstr~-~~~~~V~k~A~ 92 (249)
T PTZ00254 60 LAARVIAAIENPADVVVVSSRP-YGQRAVLKFAQ 92 (249)
T ss_pred HHHHHHHHHhCCCcEEEEEcCH-HHHHHHHHHHH
Confidence 3444444332368899999996 45455555444
Done!