RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy13791
         (90 letters)



>gnl|CDD|178473 PLN02885, PLN02885, nicotinate phosphoribosyltransferase.
          Length = 545

 Score =  151 bits (383), Expect = 4e-45
 Identities = 56/83 (67%), Positives = 71/83 (85%)

Query: 3   LMATNAARYRLAAGRNVSLLEFGLRRAQGPDGGLSASKYAYAGGFDGTSNVLAGKMYNIP 62
           L+ATNAAR+RL AG++  LLEFGLRRAQGPDGG+SASKY Y GGFD TSNV AG+++ IP
Sbjct: 144 LVATNAARHRLVAGKSKVLLEFGLRRAQGPDGGISASKYCYLGGFDATSNVEAGRLFGIP 203

Query: 63  VRGTHAHAYITSFNGLNELQLKV 85
           VRGTH+HA+++S+ GL+E+  K 
Sbjct: 204 VRGTHSHAFVSSYMGLDEIVDKT 226


>gnl|CDD|238804 cd01570, NAPRTase_A, Nicotinate phosphoribosyltransferase
           (NAPRTase), subgroup A. Nicotinate
           phosphoribosyltransferase catalyses the formation of
           NAMN and PPi from 5-phosphoribosy -1-pyrophosphate
           (PRPP) and nicotinic acid, this is the first, and also
           rate limiting, reaction in the NAD salvage synthesis.
           This salvage pathway serves to recycle NAD degradation
           products. This subgroup is present in bacteria and
           eukaryota (except funghi).
          Length = 327

 Score =  131 bits (331), Expect = 5e-39
 Identities = 51/73 (69%), Positives = 59/73 (80%), Gaps = 1/73 (1%)

Query: 3   LMATNAARYRLAAGRNVSLLEFGLRRAQGPDGGLSASKYAYAGGFDGTSNVLAGKMYNIP 62
           L+AT AAR RLAAG    LLEFGLRRAQGPD  LSA++ AY GGFDGTSNVLAGK+Y IP
Sbjct: 130 LIATKAARVRLAAG-GRPLLEFGLRRAQGPDAALSAARAAYIGGFDGTSNVLAGKLYGIP 188

Query: 63  VRGTHAHAYITSF 75
           V GT AH+++ +F
Sbjct: 189 VSGTMAHSFVQAF 201


>gnl|CDD|236426 PRK09243, PRK09243, nicotinate phosphoribosyltransferase;
           Validated.
          Length = 464

 Score =  121 bits (306), Expect = 2e-34
 Identities = 46/80 (57%), Positives = 57/80 (71%), Gaps = 3/80 (3%)

Query: 3   LMATNAARYRLAAGRNVSLLEFGLRRAQGPDGGLSASKYAYAGGFDGTSNVLAGKMYNIP 62
           L+AT AAR   AAG    LLEFG RRAQGPD  + A++ AY GGFD TSNVLAGK Y IP
Sbjct: 139 LIATKAARIVSAAG-GRPLLEFGSRRAQGPDAAVWAARAAYIGGFDATSNVLAGKRYGIP 197

Query: 63  VRGTHAHAYITSFNGLNELQ 82
           V GT AH+++ +F+  +E +
Sbjct: 198 VSGTMAHSFVQAFD--DEYE 215


>gnl|CDD|233446 TIGR01513, NAPRTase_put, putative nicotinate
           phosphoribosyltransferase.  A deep split separates two
           related families of proteins, one of which includes
           experimentally characterized examples of nicotinate
           phosphoribosyltransferase, an the first enzyme of NAD
           salvage biosynthesis. This model represents the other
           family. Members have a different (longer) spacing of
           several key motifs and have an additional C-terminal
           domain of up to 100 residues. One argument suggesting
           that this family represents the same enzyme is that no
           species has a member of both families. Another is that
           the gene encoding this protein is located near other NAD
           salvage biosynthesis genes in Nostoc and in at least
           four different Gram-positive bacteria. NAD and NADP are
           ubiquitous in life. Most members of this family are
           Gram-positive bacteria. An additional set of mutually
           closely related archaeal sequences score between the
           trusted and noise cutoffs [Biosynthesis of cofactors,
           prosthetic groups, and carriers, Pyridine nucleotides].
          Length = 443

 Score =  115 bits (291), Expect = 2e-32
 Identities = 48/75 (64%), Positives = 57/75 (76%), Gaps = 1/75 (1%)

Query: 3   LMATNAARYRLAAGRNVSLLEFGLRRAQGPDGGLSASKYAYAGGFDGTSNVLAGKMYNIP 62
           L+AT AAR  LAAG    LLEFGLRRAQGPD  L A++ AY GG DGTSNVLAG++Y IP
Sbjct: 130 LIATKAARIVLAAGGKP-LLEFGLRRAQGPDAALKAARAAYIGGADGTSNVLAGRLYGIP 188

Query: 63  VRGTHAHAYITSFNG 77
           V GT AH+++ SF+ 
Sbjct: 189 VSGTMAHSFVMSFDN 203


>gnl|CDD|238801 cd01567, NAPRTase_PncB, Nicotinate phosphoribosyltransferase
           (NAPRTase) family. Nicotinate phosphoribosyltransferase
           catalyses the formation of NAMN and PPi from
           5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic
           acid, this is the first, and also rate limiting,
           reaction in the NAD salvage synthesis. This salvage
           pathway serves to recycle NAD degradation products.
          Length = 343

 Score = 98.9 bits (247), Expect = 2e-26
 Identities = 38/93 (40%), Positives = 48/93 (51%), Gaps = 11/93 (11%)

Query: 3   LMATNAARYRLAAGRNVS-----------LLEFGLRRAQGPDGGLSASKYAYAGGFDGTS 51
            +AT AAR +LAAG  +            L +FG RR   P+  LS  + A  GGF GTS
Sbjct: 129 SIATKAARKKLAAGGLLETKDNLEELGFKLHDFGTRRRHSPEAALSGGRAALIGGFGGTS 188

Query: 52  NVLAGKMYNIPVRGTHAHAYITSFNGLNELQLK 84
           NV A K   IP  GT AH++I +F  L E   +
Sbjct: 189 NVAAAKKLGIPPIGTMAHSWIQAFGALEEAAFE 221


>gnl|CDD|224405 COG1488, PncB, Nicotinic acid phosphoribosyltransferase [Coenzyme
           metabolism].
          Length = 405

 Score = 95.1 bits (237), Expect = 7e-25
 Identities = 39/83 (46%), Positives = 48/83 (57%)

Query: 3   LMATNAARYRLAAGRNVSLLEFGLRRAQGPDGGLSASKYAYAGGFDGTSNVLAGKMYNIP 62
           L+AT AAR + AAG+   +L+FG RR    D      + AY GGFDGTSNVLA K Y I 
Sbjct: 141 LIATKAARVKDAAGKGFPVLDFGTRRRHSADAQPWIGRAAYIGGFDGTSNVLAAKKYGIK 200

Query: 63  VRGTHAHAYITSFNGLNELQLKV 85
             GT AHA I +F  L   ++  
Sbjct: 201 PIGTMAHALIQAFGQLFGDEVAA 223


>gnl|CDD|237112 PRK12484, PRK12484, nicotinate phosphoribosyltransferase;
           Provisional.
          Length = 443

 Score = 85.2 bits (211), Expect = 4e-21
 Identities = 34/74 (45%), Positives = 47/74 (63%), Gaps = 3/74 (4%)

Query: 3   LMATNAARYRLAA-GRNVSLLEFGLRRAQGPDGGLSASKYAYAGGFDGTSNVLAGKMYNI 61
           L+A+ AAR  LAA GR   +++FG RRA G D     ++ +Y  G  GTSNVLA + Y I
Sbjct: 133 LIASKAARCVLAAAGR--PVVDFGARRAHGTDAACYVARASYLAGAAGTSNVLAARQYGI 190

Query: 62  PVRGTHAHAYITSF 75
           P  GT AH+++ +F
Sbjct: 191 PASGTMAHSFVEAF 204


>gnl|CDD|238286 cd00516, PRTase_typeII, Phosphoribosyltransferase (PRTase) type II;
           This family contains two enzymes that play an important
           role in NAD production by either allowing quinolinic
           acid (QA) , quinolinate phosphoribosyl transferase
           (QAPRTase), or nicotinic acid (NA), nicotinate
           phosphoribosyltransferase (NAPRTase), to be used in the
           synthesis of NAD. QAPRTase catalyses the reaction of
           quinolinic acid (QA) with
           5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence
           of Mg2+ to produce nicotinic acid mononucleotide (NAMN),
           pyrophosphate and carbon dioxide, an important step in
           the de novo synthesis of NAD. NAPRTase catalyses a
           similar reaction leading to NAMN and pyrophosphate,
           using nicotinic acid an PPRP as substrates, used in the
           NAD salvage pathway.
          Length = 281

 Score = 75.4 bits (186), Expect = 4e-18
 Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 2/81 (2%)

Query: 3   LMATNAARYRLAA-GRNVSLLEFGLRRAQGPDGGLSASKYAYAGGFDGTSNVLAGKMYNI 61
            +AT  ARY  AA G N  + +FG R+   P   L        GG DG  N L+  +   
Sbjct: 94  GIATATARYVEAAKGANTKVHDFGTRKTT-PGLRLLEKYAVLIGGGDGHRNGLSDAILIK 152

Query: 62  PVRGTHAHAYITSFNGLNELQ 82
              GT AH+ I +F  L  ++
Sbjct: 153 DNHGTMAHSIIQAFGELAAVK 173


>gnl|CDD|202885 pfam04095, NAPRTase, Nicotinate phosphoribosyltransferase
          (NAPRTase) family.  Nicotinate
          phosphoribosyltransferase (EC:2.4.2.11) is the rate
          limiting enzyme that catalyzes the first reaction in
          the NAD salvage synthesis. This family also includes
          Pre-B cell enhancing factor that is a cytokine. This
          family is related to Quinolinate
          phosphoribosyltransferase pfam01729.
          Length = 245

 Score = 59.0 bits (143), Expect = 4e-12
 Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 4/69 (5%)

Query: 20 SLLEFGLRRA---QGPDGGLSASKYAYAGGFDGTSNVLAGKMYNIPVRGTHAHAYITSFN 76
           L +FG RR    +  +   S    A+   F GTSNVLA   Y+IP  GT AH +  +F 
Sbjct: 2  KLHDFGTRRRSSLESQEIVGSGL-EAHLVNFLGTSNVLAAAGYSIPAAGTSAHEWWGAFQ 60

Query: 77 GLNELQLKV 85
           L+  +  +
Sbjct: 61 ELDAFRNML 69


>gnl|CDD|238805 cd01571, NAPRTase_B, Nicotinate phosphoribosyltransferase
           (NAPRTase), subgroup B. Nicotinate
           phosphoribosyltransferase catalyses the formation of
           NAMN and PPi from 5-phosphoribosy -1-pyrophosphate
           (PRPP) and nicotinic acid, this is the first, and also
           rate limiting, reaction in the NAD salvage synthesis.
           This salvage pathway serves to recycle NAD degradation
           products.
          Length = 302

 Score = 58.4 bits (142), Expect = 8e-12
 Identities = 34/84 (40%), Positives = 41/84 (48%), Gaps = 8/84 (9%)

Query: 4   MATNAARYRLAAGRNVSLLEFGLRR---AQGPDGGLSASKYAYAGGFDGTSNVLAGKMYN 60
           +ATNAAR +LAAG    ++ FG RR   A  P  G +A    Y GG DG S VL  ++  
Sbjct: 97  IATNAARVKLAAGDK-PVISFGDRRDHPAIQPMDGRAA----YIGGCDGVSTVLGAELLG 151

Query: 61  IPVRGTHAHAYITSFNGLNELQLK 84
               GT  HA I  F G      K
Sbjct: 152 EKPSGTMPHALIQIFGGDQVEAWK 175


>gnl|CDD|236328 PRK08662, PRK08662, nicotinate phosphoribosyltransferase; Reviewed.
          Length = 343

 Score = 53.3 bits (129), Expect = 6e-10
 Identities = 30/75 (40%), Positives = 37/75 (49%), Gaps = 8/75 (10%)

Query: 4   MATNAARYRLAAGRNVSLLEFGLRR---AQGPDGGLSASKYAYAGGFDGTSNVLAGKMYN 60
           +AT AAR + AAG +  +L FG R    A  P       + AY GG DG S VL  ++  
Sbjct: 114 IATAAARCKEAAG-DKPVLSFGARHVHPAIAP----MMDRAAYIGGCDGVSGVLGAELLG 168

Query: 61  IPVRGTHAHAYITSF 75
           I   GT  HA I  F
Sbjct: 169 IEPSGTMPHALILIF 183


>gnl|CDD|130578 TIGR01514, NAPRTase, nicotinate phosphoribosyltransferase.  This
           model represents nicotinate phosphoribosyltransferase,
           the first enzyme in the salvage pathway of NAD
           biosynthesis from nicontinate (niacin). Members are
           primary proteobacterial but also include yeasts and
           Methanosarcina acetivorans. A related family, apparently
           non-overlapping in species distribution, is TIGR01513.
           Members of that family differ in substantially in
           sequence and have a long C-terminal extension missing
           from this family, but are proposed also to act as
           nicotinate phosphoribosyltransferase (see model
           TIGR01513) [Biosynthesis of cofactors, prosthetic
           groups, and carriers, Pyridine nucleotides].
          Length = 394

 Score = 37.0 bits (86), Expect = 3e-04
 Identities = 20/77 (25%), Positives = 26/77 (33%), Gaps = 8/77 (10%)

Query: 13  LAAGRNV-----SLLEFGLRR---AQGPDGGLSASKYAYAGGFDGTSNVLAGKMYNIPVR 64
             A   +        EFG RR    +  D      K A      GTSNV   K   +   
Sbjct: 157 EIAAETMFENGFRFSEFGTRRRFSLEVQDLVTQGLKQAAPSWLLGTSNVHLAKKLGLKPI 216

Query: 65  GTHAHAYITSFNGLNEL 81
           GT AH +      ++E 
Sbjct: 217 GTVAHEWFQGHQAISEY 233


>gnl|CDD|238695 cd01401, PncB_like, Nicotinate phosphoribosyltransferase
           (NAPRTase), related to PncB. Nicotinate
           phosphoribosyltransferase catalyses the formation of
           NAMN and PPi from 5-phosphoribosy -1-pyrophosphate
           (PRPP) and nicotinic acid, this is the first, and also
           rate limiting, reaction in the NAD salvage synthesis.
           This salvage pathway serves to recycle NAD degradation
           products. This subgroup is present in bacteria, archea
           and funghi.
          Length = 377

 Score = 36.5 bits (85), Expect = 6e-04
 Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 7/55 (12%)

Query: 23  EFGLRR-----AQGPDGGLSASKYAYAGGFDGTSNVLAGKMYNIPVRGTHAHAYI 72
           +FG RR      Q  +  L   K A  G   GTSNV     Y +   GT AH + 
Sbjct: 168 DFGTRRRFSYEVQ--ETVLKGLKQAAPGYLTGTSNVHFAMKYGLTPIGTVAHEWF 220


>gnl|CDD|235406 PRK05321, PRK05321, nicotinate phosphoribosyltransferase;
           Provisional.
          Length = 400

 Score = 36.3 bits (85), Expect = 7e-04
 Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 7/60 (11%)

Query: 18  NVSLLEFGLRR-----AQGPDGGLSASKYAYAGGFDGTSNVLAGKMYNIPVRGTHAHAYI 72
              + +FG RR      Q  +  + A K    G F GTSNV       +   GT AH + 
Sbjct: 166 GFKIADFGTRRRFSFEWQ--EEVVEALKEGLPGAFVGTSNVHLAMKLGLTPIGTMAHEWF 223


>gnl|CDD|205423 pfam13243, Prenyltrans_1, Prenyltransferase-like. 
          Length = 109

 Score = 26.1 bits (58), Expect = 1.6
 Identities = 13/44 (29%), Positives = 15/44 (34%), Gaps = 4/44 (9%)

Query: 1  MLLMATNAARYRLAAGRNVSLLEFGLRRAQGPDGGLSASKYAYA 44
            L     AR   A  + V   E+ L   Q  DGG       YA
Sbjct: 34 RALALAGDARVLEAIKKAV---EW-LLDQQQEDGGFGYDGGEYA 73


>gnl|CDD|216430 pfam01315, Ald_Xan_dh_C, Aldehyde oxidase and xanthine
          dehydrogenase, a/b hammerhead domain. 
          Length = 111

 Score = 24.9 bits (55), Expect = 4.5
 Identities = 8/14 (57%), Positives = 9/14 (64%)

Query: 63 VRGTHAHAYITSFN 76
          VR T AHA I S +
Sbjct: 21 VRSTKAHARIKSID 34


>gnl|CDD|233419 TIGR01450, recC, exodeoxyribonuclease V, gamma subunit.  This model
           describes the gamma subunit of exodeoxyribonuclease V.
           Species containing this protein should also have the
           alpha (TIGR01447) and beta (TIGR00609) subunits.
           Candidates from Borrelia and from the Chlamydias differ
           dramatically and score between trusted and noise cutoffs
           [DNA metabolism, DNA replication, recombination, and
           repair].
          Length = 1067

 Score = 24.7 bits (54), Expect = 7.8
 Identities = 18/63 (28%), Positives = 23/63 (36%), Gaps = 10/63 (15%)

Query: 3   LMATNAARYRLAAGRNVSLLEFGLRR-----AQGPDGGL--SASKYAYAGGFDGTSNVLA 55
           L A +     L A    +   FGL R     A G D G+      Y   GG       LA
Sbjct: 486 LDAEHRRELGLPATDQHNTWRFGLERMLLGYAMGEDAGIWQGVLPYDDVGGLQAE---LA 542

Query: 56  GKM 58
           G++
Sbjct: 543 GRL 545


>gnl|CDD|224446 COG1529, CoxL, Aerobic-type carbon monoxide dehydrogenase, large
          subunit CoxL/CutL homologs [Energy production and
          conversion].
          Length = 731

 Score = 24.6 bits (54), Expect = 8.1
 Identities = 14/42 (33%), Positives = 16/42 (38%), Gaps = 5/42 (11%)

Query: 33 DGGLSASKYAYAGGFDGTSNVLAGKMYNIPVRGTHAHAYITS 74
            G    K  YA        V  G +Y   VR  +AHA I S
Sbjct: 15 GLGKVTGKGRYADDI-----VAPGMLYAAFVRSPYAHARIVS 51


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.319    0.134    0.383 

Gapped
Lambda     K      H
   0.267   0.0825    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,502,070
Number of extensions: 364143
Number of successful extensions: 275
Number of sequences better than 10.0: 1
Number of HSP's gapped: 266
Number of HSP's successfully gapped: 20
Length of query: 90
Length of database: 10,937,602
Length adjustment: 58
Effective length of query: 32
Effective length of database: 8,365,070
Effective search space: 267682240
Effective search space used: 267682240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.0 bits)