RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13791
(90 letters)
>2f7f_A Nicotinate phosphoribosyltransferase, putative; structural
genomics, PSI; 2.00A {Enterococcus faecalis} SCOP:
c.1.17.1 d.41.2.1
Length = 494
Score = 117 bits (294), Expect = 8e-33
Identities = 38/73 (52%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
Query: 3 LMATNAARYRLAAGRNVSLLEFGLRRAQGPDGGLSASKYAYAGGFDGTSNVLAGKMYNIP 62
L+AT AAR + G + LLEFG RRAQ D + ++ AY GG D TSNV AGK++ IP
Sbjct: 140 LIATKAARIKSVIG-DDPLLEFGTRRAQELDAAIWGTRAAYIGGADATSNVRAGKIFGIP 198
Query: 63 VRGTHAHAYITSF 75
V GTHAH+ + S+
Sbjct: 199 VSGTHAHSLVQSY 211
>2i1o_A Nicotinate phosphoribosyltransferase; ZIN ION, zinc finger M
structural genomics, PSI, protein structure initiative;
2.40A {Thermoplasma acidophilum} PDB: 1ytd_A* 1yte_A*
1ytk_A
Length = 398
Score = 115 bits (290), Expect = 1e-32
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Query: 3 LMATNAARYRLAAGRNVSLLEFGLRRAQGPDGGLSASKYAYAGGFDGTSNVLAGKMYNIP 62
++T A++ RLAAG + FG+RR P + AY GG DG S +L K+ +
Sbjct: 124 GISTKASKVRLAAG-DSPFFSFGIRRMH-PAISPMIDRSAYIGGADGVSGILGAKLIDQD 181
Query: 63 VRGTHAHAYITSFN 76
GT HA
Sbjct: 182 PVGTMPHALSIMLG 195
>2i14_A Nicotinate-nucleotide pyrophosphorylase; ligand binding,
phosphoribosylpyrophosphate, Zn metal ION, structural
genomics, PSI; HET: PCP; 2.90A {Pyrococcus furiosus}
SCOP: c.1.17.1 d.41.2.1
Length = 395
Score = 101 bits (255), Expect = 1e-27
Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Query: 3 LMATNAARYRLAAGRNVSLLEFGLRRAQGPDGGLSASKYAYAGGFDGTSNVLAGKMYNIP 62
+AT A R ++AA + FG+R + + A+ GG DG S VL +M
Sbjct: 120 GIATAALRIKIAAK-FKPVYSFGIRHMHPAIAPM-IDRAAFIGGCDGVSGVLGAEMMGEK 177
Query: 63 VRGTHAHAYITSF 75
GT HA I +
Sbjct: 178 AVGTMPHALIITV 190
>1vlp_A Naprtase, nicotinate phosphoribosyltransferase; structural
genomics, joint center for structural genomics; HET: MSE
MES; 1.75A {Saccharomyces cerevisiae} SCOP: c.1.17.2
d.41.2.2
Length = 441
Score = 85.2 bits (211), Expect = 2e-21
Identities = 17/88 (19%), Positives = 30/88 (34%), Gaps = 10/88 (11%)
Query: 3 LMATNAARYRLAAGRNVSLLEFGLRRAQGPDG----------GLSASKYAYAGGFDGTSN 52
+ + + EFG RR + ++ + GTSN
Sbjct: 168 QLEQAEKKAETLFDNGIRFSEFGTRRRRSLKAQDLIMQGIMKAVNGNPDRNKSLLLGTSN 227
Query: 53 VLAGKMYNIPVRGTHAHAYITSFNGLNE 80
+L K Y + GT AH ++ ++E
Sbjct: 228 ILFAKKYGVKPIGTVAHEWVMGVASISE 255
>1yir_A Naprtase 2, nicotinate phosphoribosyltransferase 2; structural
genomics, protein structure initiative, hypothetical
protein, NYSGXRC, PSI; 2.10A {Pseudomonas aeruginosa}
SCOP: c.1.17.2 d.41.2.2
Length = 408
Score = 83.5 bits (207), Expect = 9e-21
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Query: 18 NVSLLEFGLRRAQG---PDGGLSASKYAYAGGFDGTSNVLAGKMYNIPVRGTHAHAYITS 74
+ +FG RR + +S K + G F GTSNV + ++ GT AH ++ +
Sbjct: 172 GFKMADFGTRRRFSYRVHEAVVSGLKEDFPGCFVGTSNVHLARKLDLKPLGTMAHEWLMA 231
Query: 75 FNGLNE 80
L
Sbjct: 232 HQQLGP 237
>3os4_A Naprtase, nicotinate phosphoribosyltransferase; structural
genomics, center for structural genomics of infec
diseases, csgid, TIM barrel; HET: MSE; 1.60A {Yersinia
pestis}
Length = 407
Score = 81.6 bits (202), Expect = 4e-20
Identities = 14/84 (16%), Positives = 31/84 (36%), Gaps = 6/84 (7%)
Query: 3 LMATNAARYRLAAG----RNVSLLEFGLRRAQGPDG--GLSASKYAYAGGFDGTSNVLAG 56
+ T ++ + + L++FG RR + + ++ GTSN
Sbjct: 149 QLRTKLEQFNALSADIDITHFKLMDFGTRRRFSREIQHTVVSTLKDEFPYLVGTSNYDLA 208
Query: 57 KMYNIPVRGTHAHAYITSFNGLNE 80
+ + GT AH + + ++
Sbjct: 209 RTLALAPVGTQAHEWFQAHQQISP 232
>1ybe_A Naprtase, nicotinate phosphoribosyltransferase; structural
genomics, protein structure initiative, NYSGXRC, PSI;
2.50A {Agrobacterium tumefaciens} SCOP: c.1.17.2
d.41.2.2
Length = 449
Score = 80.7 bits (199), Expect = 8e-20
Identities = 23/83 (27%), Positives = 30/83 (36%), Gaps = 5/83 (6%)
Query: 1 MLLMATNAARYRLAAGRNVSLLEFGLRRA---QGPDGGLSASKYAYAGGFDGTSNVLAGK 57
M R R G +S +FG RR + A K F GTSNVL
Sbjct: 180 KAKMWEKVERLRELPGLRIS--DFGTRRRHSFLWQRWCVEALKEGIGPAFTGTSNVLLAM 237
Query: 58 MYNIPVRGTHAHAYITSFNGLNE 80
++ GT+AH L +
Sbjct: 238 DSDLEAVGTNAHELPMVVAALAQ 260
>2im5_A Nicotinate phosphoribosyltransferase; structural genomics, NYSGXRC,
PSI, protein structure initiative; 2.20A {Porphyromonas
gingivalis}
Length = 394
Score = 73.6 bits (181), Expect = 2e-17
Identities = 19/82 (23%), Positives = 32/82 (39%), Gaps = 3/82 (3%)
Query: 4 MATNAARYRLAAGRNVSLLEFGLRR--AQGPDGGLSASKYAYAG-GFDGTSNVLAGKMYN 60
++ L + FG+RR + + ++ YAG GTSNV +
Sbjct: 145 EEVTRSKGELMREHRATFSIFGMRRRFSLEVEDRVTDILKQYAGESLFGTSNVHLAHKHG 204
Query: 61 IPVRGTHAHAYITSFNGLNELQ 82
+ V GTH H +I + +
Sbjct: 205 LRVSGTHPHEWIQFHGAIYGYK 226
>3dhf_A Nicotinamide phosphoribosyltransferase; NMPRTASE, NAMPRTASE,
visfatin, beryllium fluoride, nicotinamide
D-ribonucleotide, pyrophosphate; HET: NMN; 1.80A {Homo
sapiens} PDB: 3dgr_A* 3dhd_A* 3dkj_A* 3dkl_A* 2gvj_A*
2gvg_A* 2e5b_A 2e5c_A* 2e5d_A 2h3d_A* 2gvl_A 2h3b_A
2g95_A 2g96_A* 2g97_A* 3g8e_A*
Length = 484
Score = 59.3 bits (143), Expect = 3e-12
Identities = 21/102 (20%), Positives = 33/102 (32%), Gaps = 23/102 (22%)
Query: 3 LMATNAARYRL------------AAGRNVSLLEFGLRRAQGPDGGLSASKYAYAGGFDGT 50
+ATN+ + G L +FG R + + A+ F GT
Sbjct: 160 TVATNSREQKKILAKYLLETSGNLDGLEYKLHDFGYRGVSSQETAGIGA-SAHLVNFKGT 218
Query: 51 SNVLAGKM----YNI--PVRGTH----AHAYITSFNGLNELQ 82
V + Y PV G H+ IT++ +E
Sbjct: 219 DTVAGLALIKKYYGTKDPVPGYSVPAAEHSTITAWGKDHEKD 260
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.134 0.383
Gapped
Lambda K H
0.267 0.0699 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,355,623
Number of extensions: 70596
Number of successful extensions: 126
Number of sequences better than 10.0: 1
Number of HSP's gapped: 114
Number of HSP's successfully gapped: 19
Length of query: 90
Length of database: 6,701,793
Length adjustment: 57
Effective length of query: 33
Effective length of database: 5,110,296
Effective search space: 168639768
Effective search space used: 168639768
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.5 bits)