RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13791
         (90 letters)



>d2f7fa1 c.1.17.1 (A:141-485) Putative nicotinate
          phosphoribosyltransferase EF2626 {Enterococcus faecalis
          [TaxId: 1351]}
          Length = 345

 Score =  103 bits (258), Expect = 7e-29
 Identities = 38/77 (49%), Positives = 49/77 (63%), Gaps = 1/77 (1%)

Query: 4  MATNAARYRLAAGRNVSLLEFGLRRAQGPDGGLSASKYAYAGGFDGTSNVLAGKMYNIPV 63
          +AT AAR +   G +  LLEFG RRAQ  D  +  ++ AY GG D TSNV AGK++ IPV
Sbjct: 1  IATKAARIKSVIG-DDPLLEFGTRRAQELDAAIWGTRAAYIGGADATSNVRAGKIFGIPV 59

Query: 64 RGTHAHAYITSFNGLNE 80
           GTHAH+ + S+    E
Sbjct: 60 SGTHAHSLVQSYGNDYE 76


>d1ybea1 c.1.17.2 (A:168-433) Nicotinate
          phosphoribosyltransferase, C-terminal domain
          {Agrobacterium tumefaciens [TaxId: 358]}
          Length = 266

 Score = 89.2 bits (221), Expect = 5e-24
 Identities = 23/83 (27%), Positives = 30/83 (36%), Gaps = 5/83 (6%)

Query: 1  MLLMATNAARYRLAAGRNVSLLEFGLRRAQGP---DGGLSASKYAYAGGFDGTSNVLAGK 57
             M     R R   G  +S  +FG RR          + A K      F GTSNVL   
Sbjct: 13 KAKMWEKVERLRELPGLRIS--DFGTRRRHSFLWQRWCVEALKEGIGPAFTGTSNVLLAM 70

Query: 58 MYNIPVRGTHAHAYITSFNGLNE 80
            ++   GT+AH        L +
Sbjct: 71 DSDLEAVGTNAHELPMVVAALAQ 93


>d1ytda1 c.1.17.1 (A:120-389) Nicotinate phosphoribosyltransferase
          Ta1145 {Thermoplasma acidophilum [TaxId: 2303]}
          Length = 270

 Score = 88.9 bits (220), Expect = 7e-24
 Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 2/72 (2%)

Query: 5  ATNAARYRLAAGRNVSLLEFGLRRAQGPDGGLSASKYAYAGGFDGTSNVLAGKMYNIPVR 64
          +T A++ RLAAG +     FG+RR       +   + AY GG DG S +L  K+ +    
Sbjct: 1  STKASKVRLAAG-DSPFFSFGIRRMHPAISPM-IDRSAYIGGADGVSGILGAKLIDQDPV 58

Query: 65 GTHAHAYITSFN 76
          GT  HA      
Sbjct: 59 GTMPHALSIMLG 70


>d2i14a1 c.1.17.1 (A:111-389) Nicotinate-nucleotide
          pyrophosphorylase PF1904 {Pyrococcus furiosus [TaxId:
          2261]}
          Length = 279

 Score = 87.0 bits (215), Expect = 5e-23
 Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 2/78 (2%)

Query: 3  LMATNAARYRLAAGRNVSLLEFGLRRAQGPDGGLSASKYAYAGGFDGTSNVLAGKMYNIP 62
           +AT A R ++AA     +  FG+R        +   + A+ GG DG S VL  +M    
Sbjct: 4  GIATAALRIKIAAK-FKPVYSFGIRHMHPAIAPM-IDRAAFIGGCDGVSGVLGAEMMGEK 61

Query: 63 VRGTHAHAYITSFNGLNE 80
            GT  HA I +     +
Sbjct: 62 AVGTMPHALIITVGDQVK 79


>d1yira1 c.1.17.2 (A:145-399) Nicotinate
          phosphoribosyltransferase, C-terminal domain
          {Pseudomonas aeruginosa [TaxId: 287]}
          Length = 255

 Score = 85.0 bits (210), Expect = 2e-22
 Identities = 21/79 (26%), Positives = 32/79 (40%), Gaps = 5/79 (6%)

Query: 5  ATNAARYRLAAGRNVSLLEFGLRRAQG---PDGGLSASKYAYAGGFDGTSNVLAGKMYNI 61
              A     AG    + +FG RR       +  +S  K  + G F GTSNV   +  ++
Sbjct: 17 LRREASAEELAGF--KMADFGTRRRFSYRVHEAVVSGLKEDFPGCFVGTSNVHLARKLDL 74

Query: 62 PVRGTHAHAYITSFNGLNE 80
             GT AH ++ +   L  
Sbjct: 75 KPLGTMAHEWLMAHQQLGP 93


>d1vlpa2 c.1.17.2 (A:150-415) Nicotinate
          phosphoribosyltransferase, C-terminal domain {Baker's
          yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 266

 Score = 83.1 bits (205), Expect = 1e-21
 Identities = 19/87 (21%), Positives = 31/87 (35%), Gaps = 10/87 (11%)

Query: 4  MATNAARYRLAAGRNVSLLEFGLRRA----------QGPDGGLSASKYAYAGGFDGTSNV 53
          +     +        +   EFG RR           QG    ++ +         GTSN+
Sbjct: 8  LEQAEKKAETLFDNGIRFSEFGTRRRRSLKAQDLIMQGIMKAVNGNPDRNKSLLLGTSNI 67

Query: 54 LAGKMYNIPVRGTHAHAYITSFNGLNE 80
          L  K Y +   GT AH ++     ++E
Sbjct: 68 LFAKKYGVKPIGTVAHEWVMGVASISE 94


>d2ghvc1 d.318.1.1 (C:320-502) Spike protein S1 {SARS coronavirus
           [TaxId: 227859]}
          Length = 183

 Score = 22.6 bits (48), Expect = 7.9
 Identities = 12/52 (23%), Positives = 18/52 (34%), Gaps = 2/52 (3%)

Query: 39  SKYAYAGGFDGTSNVLAGKMYNIPVRGTHAHAYITSFNGLNELQLKVSSHDV 90
           + Y Y    D    VLA    NI    T  + Y   +      +L+    D+
Sbjct: 87  ADYNYKLPDDFMGCVLAWNTRNIDATSTGNYNYKYRYL--RHGKLRPFERDI 136


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.134    0.383 

Gapped
Lambda     K      H
   0.267   0.0555    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 306,238
Number of extensions: 11559
Number of successful extensions: 43
Number of sequences better than 10.0: 1
Number of HSP's gapped: 35
Number of HSP's successfully gapped: 7
Length of query: 90
Length of database: 2,407,596
Length adjustment: 54
Effective length of query: 36
Effective length of database: 1,666,176
Effective search space: 59982336
Effective search space used: 59982336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.3 bits)