BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13793
(337 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 98.2 bits (243), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 80/152 (52%), Gaps = 3/152 (1%)
Query: 169 SYNNAMFSSGTR-YQCPLCNKKINTKSNLRRHLQAHKPKGKHTCEICFRIFKTEINLTRH 227
S A G + Y CP C K + +L H + H + + C C + F + +LTRH
Sbjct: 9 SVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRH 68
Query: 228 LECHDTVE-LSCPDCNRVYPTNSTLRAHMISHSTERPHNCPHCEKTFKRNQDLKFHLNQH 286
H + CP+C + + + LRAH +H+ E+P+ CP C K+F + L+ H H
Sbjct: 69 QRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTH 128
Query: 287 TGERPYKCPFCPRTFASSGNCFSHRKRMHEGE 318
TGE+PYKCP C ++F+ N +H +R H GE
Sbjct: 129 TGEKPYKCPECGKSFSREDNLHTH-QRTHTGE 159
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 76/142 (53%), Gaps = 1/142 (0%)
Query: 162 ITASNLLSYNNAMFSSGTRYQCPLCNKKINTKSNLRRHLQAHKPKGKHTCEICFRIFKTE 221
+ S+ L+ + + Y+CP C K + K +L RH + H + + C C + F
Sbjct: 31 FSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQR 90
Query: 222 INLTRHLECHDTVE-LSCPDCNRVYPTNSTLRAHMISHSTERPHNCPHCEKTFKRNQDLK 280
NL H H + +CP+C + + + LRAH +H+ E+P+ CP C K+F R +L
Sbjct: 91 ANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLH 150
Query: 281 FHLNQHTGERPYKCPFCPRTFA 302
H HTGE+PYKCP C ++F+
Sbjct: 151 THQRTHTGEKPYKCPECGKSFS 172
Score = 72.0 bits (175), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 55/111 (49%), Gaps = 1/111 (0%)
Query: 181 YQCPLCNKKINTKSNLRRHLQAHKPKGKHTCEICFRIFKTEINLTRHLECHDTVE-LSCP 239
Y+CP C K + ++NLR H + H + + C C + F +L H H + CP
Sbjct: 78 YKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCP 137
Query: 240 DCNRVYPTNSTLRAHMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGER 290
+C + + L H +H+ E+P+ CP C K+F R L H HTG++
Sbjct: 138 ECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGKK 188
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
Length = 87
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 52/79 (65%), Gaps = 1/79 (1%)
Query: 238 CPDCNRVYPTNSTLRAHMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKCPFC 297
CP+C + + +S L+ H +H+ E+P+ CP C K+F ++ DL+ H HTGE+PYKCP C
Sbjct: 7 CPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCPEC 66
Query: 298 PRTFASSGNCFSHRKRMHE 316
++F+ S + S +R H+
Sbjct: 67 GKSFSRSDH-LSRHQRTHQ 84
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Query: 261 ERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKCPFCPRTFASSGNCFSHRKRMHEGE 318
E+P+ CP C K+F ++ +L+ H HTGE+PYKCP C ++F+ S + H+ R H GE
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQ-RTHTGE 58
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 211 CEICFRIFKTEINLTRHLECHDTVE-LSCPDCNRVYPTNSTLRAHMISHSTERPHNCPHC 269
C C + F NL +H H + CP+C + + +S L+ H +H+ E+P+ CP C
Sbjct: 7 CPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCPEC 66
Query: 270 EKTFKRNQDLKFHLNQHTGER 290
K+F R+ L H H ++
Sbjct: 67 GKSFSRSDHLSRHQRTHQNKK 87
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 235 ELSCPDCNRVYPTNSTLRAHMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKC 294
C C + + +STL H++ HS RP+ C +C K F + D+K H HTGE+P+KC
Sbjct: 1 SFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKC 60
Query: 295 PFCPRTFASSGNCFSHRKRMHEG 317
C + F+ S N +H R H G
Sbjct: 61 QVCGKAFSQSSNLITH-SRKHTG 82
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 211 CEICFRIFKTEINLTRHLECH-DTVELSCPDCNRVYPTNSTLRAHMISHSTERPHNCPHC 269
C+IC + FK L+ HL H DT C C + + S ++ H H+ E+PH C C
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVC 63
Query: 270 EKTFKRNQDLKFHLNQHTG 288
K F ++ +L H +HTG
Sbjct: 64 GKAFSQSSNLITHSRKHTG 82
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 32/63 (50%)
Query: 165 SNLLSYNNAMFSSGTRYQCPLCNKKINTKSNLRRHLQAHKPKGKHTCEICFRIFKTEINL 224
S+ LS + + S Y C C K+ + KS++++H H + H C++C + F NL
Sbjct: 14 SSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNL 73
Query: 225 TRH 227
H
Sbjct: 74 ITH 76
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
To The Adeno-Associated Virus P5 Initiator Element
Length = 124
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 54/101 (53%), Gaps = 4/101 (3%)
Query: 214 CFRIFKTEINLTRHLECHDTVELSCPDCNRVYPTNSTLRAHMISHSTERPHNCPH--CEK 271
C ++F+ + +HL H C +C + + +S L+ H + H+ E+P C C K
Sbjct: 13 CTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGK 72
Query: 272 TFKRNQDLKFHLNQHTGERPYKCPF--CPRTFASSGNCFSH 310
F + +L+ H+ HTG+RPY CPF C + FA S N SH
Sbjct: 73 RFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSH 113
Score = 35.0 bits (79), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
Query: 183 CPLCNKKINTKSNLRRHLQAHKPKGKHTC--EICFRIFKTEINLTRHLECHDTVE-LSCP 239
C C K S L+RH H + C E C + F + NL H+ H CP
Sbjct: 37 CAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCP 96
Query: 240 --DCNRVYPTNSTLRAHMISHSTER 262
CN+ + ++ L++H+++H+ +
Sbjct: 97 FDGCNKKFAQSTNLKSHILTHAKAK 121
>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
Domains From Human Kruppel-Like Factor 5
Length = 100
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 47/77 (61%), Gaps = 2/77 (2%)
Query: 239 PDCNRVYPTNSTLRAHMISHSTERPHNCP--HCEKTFKRNQDLKFHLNQHTGERPYKCPF 296
P C +VY +S L+AH+ +H+ E+P+ C C+ F R+ +L H +HTG +P++C
Sbjct: 21 PGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGV 80
Query: 297 CPRTFASSGNCFSHRKR 313
C R+F+ S + H KR
Sbjct: 81 CNRSFSRSDHLALHMKR 97
Score = 35.4 bits (80), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 33/78 (42%), Gaps = 3/78 (3%)
Query: 184 PLCNKKINTKSNLRRHLQAHKPKGKHTC--EICFRIFKTEINLTRHLECHDTVE-LSCPD 240
P C K S+L+ HL+ H + + C E C F LTRH H + C
Sbjct: 21 PGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGV 80
Query: 241 CNRVYPTNSTLRAHMISH 258
CNR + + L HM H
Sbjct: 81 CNRSFSRSDHLALHMKRH 98
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 36/83 (43%), Gaps = 5/83 (6%)
Query: 209 HTCEI--CFRIFKTEINLTRHLECHDT---VELSCPDCNRVYPTNSTLRAHMISHSTERP 263
H C+ C +++ +L HL H + + C+ + + L H H+ +P
Sbjct: 16 HYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKP 75
Query: 264 HNCPHCEKTFKRNQDLKFHLNQH 286
C C ++F R+ L H+ +H
Sbjct: 76 FQCGVCNRSFSRSDHLALHMKRH 98
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 61/142 (42%), Gaps = 24/142 (16%)
Query: 176 SSGTRYQCPLCNKKINTKSNLRRHLQAHKPKGKHTCEICFRIFKTEINLTRHLECHDTVE 235
S + +CP C+KK +K L+ H + H + C C + + + NL H
Sbjct: 3 SGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEH-------- 54
Query: 236 LSCPDCNRVYPTNSTLRAHMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKCP 295
A + +E+ C C++TF+R +L+ H+ HTGE PYKC
Sbjct: 55 ----------------EARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCS 98
Query: 296 FCPRTFASSGNCFSHRKRMHEG 317
C + F + SH ++H G
Sbjct: 99 SCSQQFMQKKDLQSHMIKLHSG 120
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 51/129 (39%), Gaps = 25/129 (19%)
Query: 161 KITASNLLSYNNAMFSSGTRYQCPLCNKKINTKSNLRRHLQAHKPKGKHTCEICFRIFKT 220
K + L +N + ++CP C K K NL H +
Sbjct: 16 KFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEA-----------------RN 58
Query: 221 EINLTRHLECHDTVELSCPDCNRVYPTNSTLRAHMISHSTERPHNCPHCEKTFKRNQDLK 280
+N + + +C C + LR HM+SH+ E P+ C C + F + +DL+
Sbjct: 59 CMNRSEQV-------FTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQ 111
Query: 281 FHLNQ-HTG 288
H+ + H+G
Sbjct: 112 SHMIKLHSG 120
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 13/94 (13%)
Query: 137 GENEMETPTPKKIGIREKVNWKKTKITASNLLSYN--NAMFSSGTRYQCPLCNKKINTKS 194
GE E P K R++ NLL + N M S + C +C + +
Sbjct: 32 GEKPFECPKCGKCYFRKE-----------NLLEHEARNCMNRSEQVFTCSVCQETFRRRM 80
Query: 195 NLRRHLQAHKPKGKHTCEICFRIFKTEINLTRHL 228
LR H+ +H + + C C + F + +L H+
Sbjct: 81 ELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHM 114
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In
Zinc Finger Protein 278
Length = 95
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 46/86 (53%), Gaps = 2/86 (2%)
Query: 236 LSCPDCNRVYPTNSTLRAHMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGE--RPYK 293
++C C +++ L H +SHS E+P++CP C FKR + +H+ H G +PY
Sbjct: 8 VACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYI 67
Query: 294 CPFCPRTFASSGNCFSHRKRMHEGET 319
C C + F+ + H K++H G +
Sbjct: 68 CQSCGKGFSRPDHLNGHIKQVHSGPS 93
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 43/114 (37%), Gaps = 26/114 (22%)
Query: 176 SSGTRYQCPLCNKKINTKSNLRRHLQAHKPKGKHTCEICFRIFKTEINLTRHLECHDTVE 235
S + C +C K +L RH +H + ++C +C FK + ++ H+ HD
Sbjct: 3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG-- 60
Query: 236 LSCPDCNRVYPTNSTLRAHMISHSTERPHNCPHCEKTFKRNQDLKFHLNQ-HTG 288
S +P+ C C K F R L H+ Q H+G
Sbjct: 61 -----------------------SVGKPYICQSCGKGFSRPDHLNGHIKQVHSG 91
>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 89
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
Query: 241 CNRVYPTNSTLRAHMISHSTERPHNCPH--CEKTFKRNQDLKFHLNQHTGERPYKCPFCP 298
C + Y +S L+AH+ +H+ E+P++C C F R+ +L H +HTG RP++C C
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 72
Query: 299 RTFASSGNCFSHRKR 313
R F+ S + H KR
Sbjct: 73 RAFSRSDHLALHMKR 87
Score = 35.0 bits (79), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 34/88 (38%), Gaps = 5/88 (5%)
Query: 204 KPKGKHTCEI--CFRIFKTEINLTRHLECHDT---VELSCPDCNRVYPTNSTLRAHMISH 258
K HTC+ C + + +L HL H C + + L H H
Sbjct: 1 KRTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKH 60
Query: 259 STERPHNCPHCEKTFKRNQDLKFHLNQH 286
+ RP C C++ F R+ L H+ +H
Sbjct: 61 TGHRPFQCQKCDRAFSRSDHLALHMKRH 88
>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 90
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
Query: 241 CNRVYPTNSTLRAHMISHSTERPHNCPH--CEKTFKRNQDLKFHLNQHTGERPYKCPFCP 298
C + Y +S L+AH+ +H+ E+P++C C F R+ +L H +HTG RP++C C
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 73
Query: 299 RTFASSGNCFSHRKR 313
R F+ S + H KR
Sbjct: 74 RAFSRSDHLALHMKR 88
Score = 35.0 bits (79), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 33/83 (39%), Gaps = 5/83 (6%)
Query: 209 HTCEI--CFRIFKTEINLTRHLECHDT---VELSCPDCNRVYPTNSTLRAHMISHSTERP 263
HTC+ C + + +L HL H C + + L H H+ RP
Sbjct: 7 HTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRP 66
Query: 264 HNCPHCEKTFKRNQDLKFHLNQH 286
C C++ F R+ L H+ +H
Sbjct: 67 FQCQKCDRAFSRSDHLALHMKRH 89
>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
Human Zinc Finger Protein Zic 3
Length = 155
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 45/82 (54%), Gaps = 7/82 (8%)
Query: 238 CPDCNRVYPTNSTLRAHMISHSTERPHNCPH--CEKTFKRNQDLKFHLNQHTGERPYKCP 295
CP + + L H+ H+ E+P CP C K F R+++LK H HTGE+P+KC
Sbjct: 65 CPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCE 124
Query: 296 F--CPRTFASSGNCFSHRKRMH 315
F C R FA+S + +K MH
Sbjct: 125 FEGCDRRFANSSD---RKKHMH 143
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 53/119 (44%), Gaps = 14/119 (11%)
Query: 186 CNKKINTKSNLRRHLQAHKPKG----KHTC--EICFR---IFKTEINLTRHLECHDTVE- 235
C++ +T L H+ G H C E C R FK + L H+ H +
Sbjct: 31 CDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKP 90
Query: 236 LSCP--DCNRVYPTNSTLRAHMISHSTERPHNCPH--CEKTFKRNQDLKFHLNQHTGER 290
CP C +++ + L+ H +H+ E+P C C++ F + D K H++ HT ++
Sbjct: 91 FPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDK 149
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
Length = 90
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 237 SCP--DCNRVYPTNSTLRAHMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKC 294
+CP C+R + +S L H+ H+ ++P C C + F R+ L H+ HTGE+P+ C
Sbjct: 6 ACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFAC 65
Query: 295 PFCPRTFASS 304
C R FA S
Sbjct: 66 DICGRKFARS 75
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Query: 181 YQCPL--CNKKINTKSNLRRHLQAHKPKGKHTCEICFRIFKTEINLTRHLECHDTVE-LS 237
Y CP+ C+++ + SNL RH++ H + C IC R F +LT H+ H + +
Sbjct: 5 YACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 238 CPDCNRVYPTNSTLRAHMISH 258
C C R + + + H H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 72 NGPKPYQCAICPRGYYSDIGLQNHLWSH 99
G KP+QC IC R + L H+ +H
Sbjct: 30 TGQKPFQCRICMRNFSRSDHLTTHIRTH 57
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 237 SCP--DCNRVYPTNSTLRAHMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKC 294
+CP C+R + + +L H+ H+ ++P C C + F R+ L H+ HTGE+P+ C
Sbjct: 6 ACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFAC 65
Query: 295 PFCPRTFASS 304
C R FA S
Sbjct: 66 DICGRKFARS 75
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Query: 181 YQCPL--CNKKINTKSNLRRHLQAHKPKGKHTCEICFRIFKTEINLTRHLECHDTVE-LS 237
Y CP+ C+++ + +L RH++ H + C IC R F +LT H+ H + +
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 238 CPDCNRVYPTNSTLRAHMISH 258
C C R + + + H H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Query: 212 EICFRIFKTEINLTRHLECHDTVE-LSCPDCNRVYPTNSTLRAHMISHSTERPHNCPHCE 270
E C R F +LTRH+ H + C C R + + L H+ +H+ E+P C C
Sbjct: 10 ESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG 69
Query: 271 KTFKRNQDLKFHLNQH 286
+ F R+ + K H H
Sbjct: 70 RKFARSDERKRHTKIH 85
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 72 NGPKPYQCAICPRGYYSDIGLQNHLWSH 99
G KP+QC IC R + L H+ +H
Sbjct: 30 TGQKPFQCRICMRNFSRSDHLTTHIRTH 57
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
Length = 90
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 237 SCP--DCNRVYPTNSTLRAHMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKC 294
+CP C+R + ++ L H+ H+ ++P C C + F R+ L H+ HTGE+P+ C
Sbjct: 6 ACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFAC 65
Query: 295 PFCPRTFASS 304
C R FA S
Sbjct: 66 DICGRKFARS 75
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Query: 181 YQCPL--CNKKINTKSNLRRHLQAHKPKGKHTCEICFRIFKTEINLTRHLECHDTVE-LS 237
Y CP+ C+++ + ++L RH++ H + C IC R F +LT H+ H + +
Sbjct: 5 YACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 238 CPDCNRVYPTNSTLRAHMISH 258
C C R + + + H H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Query: 212 EICFRIFKTEINLTRHLECHDTVE-LSCPDCNRVYPTNSTLRAHMISHSTERPHNCPHCE 270
E C R F +LTRH+ H + C C R + + L H+ +H+ E+P C C
Sbjct: 10 ESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG 69
Query: 271 KTFKRNQDLKFHLNQH 286
+ F R+ + K H H
Sbjct: 70 RKFARSDERKRHTKIH 85
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 72 NGPKPYQCAICPRGYYSDIGLQNHLWSH 99
G KP+QC IC R + L H+ +H
Sbjct: 30 TGQKPFQCRICMRNFSRSDHLTTHIRTH 57
>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
Length = 90
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 237 SCP--DCNRVYPTNSTLRAHMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKC 294
+CP C+R + ++ L H+ H+ ++P C C + F R+ L H+ HTGE+P+ C
Sbjct: 6 ACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFAC 65
Query: 295 PFCPRTFASS 304
C R FA S
Sbjct: 66 DICGRKFARS 75
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Query: 212 EICFRIFKTEINLTRHLECHDTVE-LSCPDCNRVYPTNSTLRAHMISHSTERPHNCPHCE 270
E C R F LTRH+ H + C C R + + L H+ +H+ E+P C C
Sbjct: 10 ESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG 69
Query: 271 KTFKRNQDLKFHLNQH 286
+ F R+ + K H H
Sbjct: 70 RKFARSDERKRHTKIH 85
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Query: 181 YQCPL--CNKKINTKSNLRRHLQAHKPKGKHTCEICFRIFKTEINLTRHLECHDTVE-LS 237
Y CP+ C+++ + + L RH++ H + C IC R F +LT H+ H + +
Sbjct: 5 YACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 238 CPDCNRVYPTNSTLRAHMISH 258
C C R + + + H H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 72 NGPKPYQCAICPRGYYSDIGLQNHLWSH 99
G KP+QC IC R + L H+ +H
Sbjct: 30 TGQKPFQCRICMRNFSRSDHLTTHIRTH 57
>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
Length = 155
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 4/80 (5%)
Query: 243 RVYPTNSTLRAHMISHSTERPHNCPH--CEKTFKRNQDLKFHLNQHTGERPYKCPF--CP 298
R + L HM H+ E+PH C C K++ R ++LK HL HTGE+PY C C
Sbjct: 47 RPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCS 106
Query: 299 RTFASSGNCFSHRKRMHEGE 318
+ F+++ + H+ R H E
Sbjct: 107 KAFSNASDRAKHQNRTHSNE 126
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 64/146 (43%), Gaps = 16/146 (10%)
Query: 186 CNKKINTKSNLRRHLQAHKPKGKHTCEIC--------FRIFKTEINLTRHLECHDTVE-- 235
C+++ +++ L H+ + G+ +C R FK + L H+ H +
Sbjct: 9 CSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPH 68
Query: 236 -LSCPDCNRVYPTNSTLRAHMISHSTERPHNCPH--CEKTFKRNQDLKFHLNQ-HTGERP 291
+ C + Y L+ H+ SH+ E+P+ C H C K F D H N+ H+ E+P
Sbjct: 69 KCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKP 128
Query: 292 YKC--PFCPRTFASSGNCFSHRKRMH 315
Y C P C + + + H K +H
Sbjct: 129 YVCKLPGCTKRYTDPSSLRKHVKTVH 154
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 237 SCP--DCNRVYPTNSTLRAHMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKC 294
+CP C+R + + L H+ H+ ++P C C + F R+ L H+ HTGE+P+ C
Sbjct: 6 ACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFAC 65
Query: 295 PFCPRTFASS 304
C R FA S
Sbjct: 66 DICGRKFARS 75
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Query: 181 YQCPL--CNKKINTKSNLRRHLQAHKPKGKHTCEICFRIFKTEINLTRHLECHDTVE-LS 237
Y CP+ C+++ + L RH++ H + C IC R F +LT H+ H + +
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 238 CPDCNRVYPTNSTLRAHMISH 258
C C R + + + H H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Query: 212 EICFRIFKTEINLTRHLECHDTVE-LSCPDCNRVYPTNSTLRAHMISHSTERPHNCPHCE 270
E C R F LTRH+ H + C C R + + L H+ +H+ E+P C C
Sbjct: 10 ESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG 69
Query: 271 KTFKRNQDLKFHLNQH 286
+ F R+ + K H H
Sbjct: 70 RKFARSDERKRHTKIH 85
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 72 NGPKPYQCAICPRGYYSDIGLQNHLWSH 99
G KP+QC IC R + L H+ +H
Sbjct: 30 TGQKPFQCRICMRNFSRSDHLTTHIRTH 57
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
Length = 87
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 237 SCP--DCNRVYPTNSTLRAHMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKC 294
+CP C+R + + L H+ H+ ++P C C + F R+ L H+ HTGE+P+ C
Sbjct: 5 ACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFAC 64
Query: 295 PFCPRTFASS 304
C R FA S
Sbjct: 65 DICGRKFARS 74
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Query: 181 YQCPL--CNKKINTKSNLRRHLQAHKPKGKHTCEICFRIFKTEINLTRHLECHDTVE-LS 237
Y CP+ C+++ + L RH++ H + C IC R F +LT H+ H + +
Sbjct: 4 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 63
Query: 238 CPDCNRVYPTNSTLRAHMISH 258
C C R + + + H H
Sbjct: 64 CDICGRKFARSDERKRHTKIH 84
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Query: 212 EICFRIFKTEINLTRHLECHDTVE-LSCPDCNRVYPTNSTLRAHMISHSTERPHNCPHCE 270
E C R F LTRH+ H + C C R + + L H+ +H+ E+P C C
Sbjct: 9 ESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG 68
Query: 271 KTFKRNQDLKFHLNQH 286
+ F R+ + K H H
Sbjct: 69 RKFARSDERKRHTKIH 84
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 72 NGPKPYQCAICPRGYYSDIGLQNHLWSH 99
G KP+QC IC R + L H+ +H
Sbjct: 29 TGQKPFQCRICMRNFSRSDHLTTHIRTH 56
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
Zif268- Dna Complex At 2.1 Angstroms
Length = 87
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 237 SCP--DCNRVYPTNSTLRAHMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKC 294
+CP C+R + + L H+ H+ ++P C C + F R+ L H+ HTGE+P+ C
Sbjct: 6 ACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFAC 65
Query: 295 PFCPRTFASS 304
C R FA S
Sbjct: 66 DICGRKFARS 75
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Query: 181 YQCPL--CNKKINTKSNLRRHLQAHKPKGKHTCEICFRIFKTEINLTRHLECHDTVE-LS 237
Y CP+ C+++ + L RH++ H + C IC R F +LT H+ H + +
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 238 CPDCNRVYPTNSTLRAHMISH 258
C C R + + + H H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Query: 212 EICFRIFKTEINLTRHLECHDTVE-LSCPDCNRVYPTNSTLRAHMISHSTERPHNCPHCE 270
E C R F LTRH+ H + C C R + + L H+ +H+ E+P C C
Sbjct: 10 ESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG 69
Query: 271 KTFKRNQDLKFHLNQH 286
+ F R+ + K H H
Sbjct: 70 RKFARSDERKRHTKIH 85
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 72 NGPKPYQCAICPRGYYSDIGLQNHLWSH 99
G KP+QC IC R + L H+ +H
Sbjct: 30 TGQKPFQCRICMRNFSRSDHLTTHIRTH 57
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 237 SCP--DCNRVYPTNSTLRAHMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKC 294
+CP C+R + + L H+ H+ ++P C C + F + L H+ HTGE+P+ C
Sbjct: 6 ACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFAC 65
Query: 295 PFCPRTFAS 303
C R FA+
Sbjct: 66 DICGRKFAT 74
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Query: 181 YQCPL--CNKKINTKSNLRRHLQAHKPKGKHTCEICFRIFKTEINLTRHLECHDTVE-LS 237
Y CP+ C+++ + K+NL H++ H + C IC R F + +L H+ H + +
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFA 64
Query: 238 CPDCNRVYPTNSTLRAHMISH 258
C C R + T T H H
Sbjct: 65 CDICGRKFATLHTRTRHTKIH 85
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 72 NGPKPYQCAICPRGYYSDIGLQNHLWSH 99
G KP+QC IC R + L H+ +H
Sbjct: 30 TGQKPFQCRICMRNFSQQASLNAHIRTH 57
>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding
Domain In Complex With Kaiso Binding Site Dna
pdb|4F6M|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Domain
In Complex With Kaiso Binding Site Dna
pdb|4F6N|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Protein
In Complex With Methylated Cpg Site Dna
Length = 133
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 45/95 (47%)
Query: 234 VELSCPDCNRVYPTNSTLRAHMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYK 293
V C C R Y ++LR H HS E+ + C +CEK F + H HTGER Y+
Sbjct: 21 VYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQ 80
Query: 294 CPFCPRTFASSGNCFSHRKRMHEGETLPDISLDEM 328
C C ++F + SH K +H + D L +
Sbjct: 81 CLACGKSFINYQFMSSHIKSVHSQDPSGDSKLYRL 115
Score = 35.8 bits (81), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Query: 181 YQCPLCNKKINTKSNLRRHLQAHKPKGKHTCEICFRIFKTEINLTRHLECHDTVE--LSC 238
Y C +C + ++LRRH H + K+ C C ++F T+H E H T E C
Sbjct: 23 YICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKH-EIHHTGERRYQC 81
Query: 239 PDCNRVYPTNSTLRAHMISHSTERP 263
C + + + +H+ S ++ P
Sbjct: 82 LACGKSFINYQFMSSHIKSVHSQDP 106
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 53/129 (41%), Gaps = 27/129 (20%)
Query: 184 PLCNKKINTKSNLRRHLQAHKPKGKHTCEICFRIFKTEINLTRHLECHDTVELSCPDCNR 243
P CNK+ S+L+ H + H + + C+ DC R
Sbjct: 12 PGCNKRYFKLSHLQMHSRKHTGEKPYQCDF-------------------------KDCER 46
Query: 244 VYPTNSTLRAHMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKC--PFCPRTF 301
+ + L+ H H+ +P C C++ F R+ LK H HTGE+P+ C P C + F
Sbjct: 47 RFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKF 106
Query: 302 ASSGNCFSH 310
A S H
Sbjct: 107 ARSDELVRH 115
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 69 RRKNGPKPYQCAICPRGYYSDIGLQNHLWSH 99
RR G KP+QC C R + L+ H +H
Sbjct: 59 RRHTGVKPFQCKTCQRKFSRSDHLKTHTRTH 89
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
Length = 90
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Query: 237 SCP--DCNRVYPTNSTLRAHMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKC 294
+CP C+R + + L H+ H+ ++P C C + F ++ L H+ HTGE+P+ C
Sbjct: 6 ACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFAC 65
Query: 295 PFCPRTFAS 303
C R FA+
Sbjct: 66 DICGRKFAT 74
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Query: 181 YQCPL--CNKKINTKSNLRRHLQAHKPKGKHTCEICFRIFKTEINLTRHLECHDTVE-LS 237
Y CP+ C+++ + K+NL H++ H + C IC R F L +H+ H + +
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFA 64
Query: 238 CPDCNRVYPTNSTLRAHMISH 258
C C R + T T H H
Sbjct: 65 CDICGRKFATLHTRDRHTKIH 85
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 73 GPKPYQCAICPRGYYSDIGLQNHLWSH 99
G KP+QC IC R + GL H+ +H
Sbjct: 31 GQKPFQCRICMRNFSQHTGLNQHIRTH 57
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 235 ELSCPDCNRVYPTNSTLRAHMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKC 294
E C C R + + L H +H+ ERP+ C C K F+R L+ H H+ E+P+KC
Sbjct: 17 EFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKC 76
Query: 295 PFCPRTFASSGNCFSHRKRMHEGETLPDIS 324
C + F S H K +H + P +
Sbjct: 77 QECGKGFCQSRTLAVH-KTLHMQTSSPTAA 105
Score = 34.7 bits (78), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Query: 181 YQCPLCNKKINTKSNLRRHLQAHKPKGKHTCEICFRIFKTEINLTRHLECHDTVE-LSCP 239
+ C C + NL H + H + +TC+IC + F+ + +L H H + C
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQ 77
Query: 240 DCNRVYPTNSTLRAHMISH 258
+C + + + TL H H
Sbjct: 78 ECGKGFCQSRTLAVHKTLH 96
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 25/52 (48%)
Query: 260 TERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKCPFCPRTFASSGNCFSHR 311
T++ C C + F ++ +L H HT ERPY C C + F + HR
Sbjct: 14 TKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHR 65
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 238 CPDCNRVYPTNSTLRAHMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKCPFC 297
C C + + L+ HM H+ +P+ C C+ + L HL H+ ERP+KC C
Sbjct: 11 CEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQIC 70
Query: 298 PRTFASSGNCFSHRKRMHEGETLP 321
P +S H R H G++ P
Sbjct: 71 PYASRNSSQLTVHL-RSHTGDSGP 93
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 257 SHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKCPFCPRTFASSGNCFSHRKRMHE 316
S + PH C C K F R LK H+ HTG +PYKC C A S + H R+H
Sbjct: 2 SSGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHL-RIHS 60
Query: 317 GE 318
E
Sbjct: 61 DE 62
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 46/117 (39%), Gaps = 31/117 (26%)
Query: 176 SSGTR--YQCPLCNKKINTKSNLRRHLQAHKPKGKHTCEICFRIFKTEINLTRHLECHDT 233
SSG+ ++C +C K + K L+ H++ CH
Sbjct: 2 SSGSSGPHKCEVCGKCFSRKDKLKTHMR----------------------------CHTG 33
Query: 234 VE-LSCPDCNRVYPTNSTLRAHMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGE 289
V+ C C+ +S+L H+ HS ERP C C + + L HL HTG+
Sbjct: 34 VKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLRSHTGD 90
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 33/70 (47%)
Query: 262 RPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKCPFCPRTFASSGNCFSHRKRMHEGETLP 321
+P C C + F R+ L H+ HTGE+P+ C C R FA S HR H L
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHILPILE 61
Query: 322 DISLDEMSDN 331
D + +S N
Sbjct: 62 DKVEELLSKN 71
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 23/47 (48%)
Query: 236 LSCPDCNRVYPTNSTLRAHMISHSTERPHNCPHCEKTFKRNQDLKFH 282
C C R + + L H+ +H+ E+P C C + F R+ + K H
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 50
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 22/47 (46%)
Query: 181 YQCPLCNKKINTKSNLRRHLQAHKPKGKHTCEICFRIFKTEINLTRH 227
+QC +C + + +L H++ H + C+IC R F RH
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 50
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Zinc Finger Protein 24
Length = 72
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 261 ERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKCPFCPRTFASSGNCFSHRKRMH 315
E+P+ C C K F R+ L H HTGE+PYKC C + F+ + +H +R+H
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH-QRIH 65
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 25/51 (49%)
Query: 237 SCPDCNRVYPTNSTLRAHMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHT 287
C +C + + +S L H H+ E+P+ C C K F +N L H HT
Sbjct: 16 GCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains
Of Human Zinc Finger Protein 297b
Length = 110
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 29/62 (46%)
Query: 240 DCNRVYPTNSTLRAHMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKCPFCPR 299
C + + S HM H RP+ C C K FK L H+ HTG +PY+C C +
Sbjct: 14 QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAK 73
Query: 300 TF 301
F
Sbjct: 74 RF 75
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
Query: 176 SSGTRYQCPLCNKKINTKSNLRRHLQAHKPKGKHTCEICFRIFKTEINLTRHLECHDTVE 235
SSG + C K KS RH+ H + C +C + FK + +L H++ H ++
Sbjct: 5 SSGDKLYPCQCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIK 64
Query: 236 -LSCPDCNRVYPTNSTLRAHMIS 257
C C + + + H+ S
Sbjct: 65 PYECNICAKRFMWRDSFHRHVTS 87
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 28/75 (37%), Gaps = 1/75 (1%)
Query: 214 CFRIFKTEINLTRHLECHDTVE-LSCPDCNRVYPTNSTLRAHMISHSTERPHNCPHCEKT 272
C + F + RH+ H + C C + + L HM H+ +P+ C C K
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKR 74
Query: 273 FKRNQDLKFHLNQHT 287
F H+ T
Sbjct: 75 FMWRDSFHRHVTSCT 89
>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
Form
pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
Length = 57
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 28/51 (54%)
Query: 266 CPHCEKTFKRNQDLKFHLNQHTGERPYKCPFCPRTFASSGNCFSHRKRMHE 316
C +C K F+ N L HL HTGE+PYKC FC A + H +R H+
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHHK 57
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 27/49 (55%)
Query: 238 CPDCNRVYPTNSTLRAHMISHSTERPHNCPHCEKTFKRNQDLKFHLNQH 286
C C + + +N L H+ +H+ E+P+ C CE + L++HL +H
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 261 ERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKCPFCPRTFASSGNCFSHRKRMHEGE 318
++P+ C C+ +F+ +L H HTGE+PY+C C F N +H R+H GE
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTH-TRIHSGE 71
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 26/54 (48%)
Query: 238 CPDCNRVYPTNSTLRAHMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERP 291
C C + L +H H+ E+P+ C C F R +LK H H+GE+P
Sbjct: 20 CDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 19/51 (37%)
Query: 181 YQCPLCNKKINTKSNLRRHLQAHKPKGKHTCEICFRIFKTEINLTRHLECH 231
Y+C C K NL H H + + C IC F NL H H
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIH 68
>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
Length = 73
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
Query: 262 RPHNCP--HCEKTFKRNQDLKFHLNQHTGERPYKCPFCPRTFASSGNCFSH 310
RP+ CP C++ F R+ +L H+ HTG++P++C C R F+ S + +H
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH 68
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
Query: 165 SNLLSYNNAMFSSGTRYQCPL--CNKKINTKSNLRRHLQAHKPKGKHTCEICFRIFKTEI 222
+NLL+Y + Y CP+ C+++ + L RH++ H + C IC R F
Sbjct: 7 NNLLNY---VVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSD 63
Query: 223 NLTRHLECH 231
+LT H+ H
Sbjct: 64 HLTTHIRTH 72
Score = 31.6 bits (70), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 237 SCP--DCNRVYPTNSTLRAHMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHT 287
+CP C+R + + L H+ H+ ++P C C + F R+ L H+ HT
Sbjct: 21 ACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 69 RRKNGPKPYQCAICPRGYYSDIGLQNHLWSH 99
R G KP+QC IC R + L H+ +H
Sbjct: 42 RIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domain
Of Zinc Finger Protein 435
Length = 77
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 262 RPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKCPFCPRTFASSGNCFSHRKRMHEG 317
R + C C K+F + DL H HTGE+PYKC C + F + H R+H G
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHH-RVHTG 71
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 27/54 (50%)
Query: 238 CPDCNRVYPTNSTLRAHMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERP 291
C +C + + +S L H +H+ E+P+ C C K F + L H HTG P
Sbjct: 21 CDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
Score = 31.2 bits (69), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 25/52 (48%)
Query: 180 RYQCPLCNKKINTKSNLRRHLQAHKPKGKHTCEICFRIFKTEINLTRHLECH 231
RY+C C K + S+L +H + H + + C+ C + F +L H H
Sbjct: 18 RYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVH 69
>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures
Length = 92
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
Query: 237 SCPDCNRVYPTNSTLRAHMISHSTERPHNCPH--CEKTFKRNQDLKFHLNQHTGERPYKC 294
S DC Y N L+AH+ H+ E+P C CEK F L H HTGE+ + C
Sbjct: 7 SFADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTC 66
Query: 295 --PFCPRTFASSGNCFSHRKRMH 315
C F + N H R H
Sbjct: 67 DSDGCDLRFTTKANMKKHFNRFH 89
>pdb|2EPA|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domains
From Human Krueppel-Like Factor 10
Length = 72
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 10/67 (14%)
Query: 248 NSTLRAHMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKCPF--CPRTFASSG 305
+S +R+H+ SH P C KT+ ++ LK H HTGE+P+ C + C R FA S
Sbjct: 12 SSRIRSHICSH--------PGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSD 63
Query: 306 NCFSHRK 312
HR+
Sbjct: 64 ELSRHRR 70
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 239 PDCNRVYPTNSTLRAHMISHSTERPHNCP--HCEKTFKRNQDLKFHLNQH 286
P C + Y +S L+AH +H+ E+P +C CE+ F R+ +L H H
Sbjct: 23 PGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
Nmr, 25 Structures
Length = 60
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 25/52 (48%)
Query: 266 CPHCEKTFKRNQDLKFHLNQHTGERPYKCPFCPRTFASSGNCFSHRKRMHEG 317
C C + F R + LK H HT E+PY C C R F H +++H G
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 236 LSCPDCNRVYPTNSTLRAHMISHSTERPHNCPHCEKTFKRNQDLKFHLNQ-HTG 288
C C R + L+ H SH+ E+P+ C C + F R L H + H+G
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 25/49 (51%)
Query: 181 YQCPLCNKKINTKSNLRRHLQAHKPKGKHTCEICFRIFKTEINLTRHLE 229
+ C +C + + +L+RH ++H + + C +C R F L RH +
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQ 51
>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
pdb|1TF6|D Chain D, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
Length = 190
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 56/132 (42%), Gaps = 21/132 (15%)
Query: 180 RYQCPL--CNKKINTKSNLRRHLQAHKPKGKHTC--EICFRIFKTEINLTRHLECHDTVE 235
RY C C N L+ HL H + C E C + F + +LTRH H +
Sbjct: 12 RYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEK 71
Query: 236 -LSCPD--CNRVYPTNSTLRAHMISHSTERPHN---CPH------CEKTFKRNQDLKFHL 283
+C C+ + T + ++ H R HN C + C K FK++ LK H
Sbjct: 72 NFTCDSDGCDLRFTTKANMKKHF-----NRFHNIKICVYVCHFENCGKAFKKHNQLKVHQ 126
Query: 284 NQHTGERPYKCP 295
HT + PY+CP
Sbjct: 127 FSHTQQLPYECP 138
>pdb|2EM8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
423- 455) Of Human Zinc Finger Protein 224
Length = 46
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 261 ERPHNCPHCEKTFKRNQDLKFHLNQHTGER 290
E+P+ C C K +KR DL FH HTGE+
Sbjct: 10 EKPYKCVECGKGYKRRLDLDFHQRVHTGEK 39
>pdb|1UN6|B Chain B, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|C Chain C, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|D Chain D, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|2HGH|A Chain A, Transcription Factor Iiia Zinc Fingers 4-6 Bound To 5s
Rrna 55mer (Nmr Structure)
Length = 87
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 240 DCNRVYPTNSTLRAHMISHSTERPHNCPH--CEKTFKRNQDLKFHLNQHTG 288
+C + + ++ L+ H SH+ + P+ CPH C+K F LK H H G
Sbjct: 8 NCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 58
Score = 31.2 bits (69), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 269 CEKTFKRNQDLKFHLNQHTGERPYKCP 295
C K FK++ LK H HT + PY+CP
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECP 35
>pdb|2J7J|A Chain A, Invariance Of The Zinc Finger Module: A Comparison Of The
Free Structure With Those In Nucleic-Acid Complexes
Length = 85
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 240 DCNRVYPTNSTLRAHMISHSTERPHNCPH--CEKTFKRNQDLKFHLNQHTG 288
+C + + ++ L+ H SH+ + P+ CPH C+K F LK H H G
Sbjct: 8 NCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 58
Score = 31.6 bits (70), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 269 CEKTFKRNQDLKFHLNQHTGERPYKCP 295
C K FK++ LK H HT + PY+CP
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECP 35
>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Transcriptional Repressor Ctcf
Length = 86
Score = 35.8 bits (81), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 7/60 (11%)
Query: 257 SHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKCPFCPRTFASS--GNCFSHRKRM 314
+H+ E+P+ C HC+KTF++ Q L H +R + F P F S G F+ R M
Sbjct: 9 THTGEKPYACSHCDKTFRQKQLLDMHF-----KRYHDPNFVPAAFVCSKCGKTFTRRNTM 63
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 19/36 (52%)
Query: 286 HTGERPYKCPFCPRTFASSGNCFSHRKRMHEGETLP 321
HTGE+PY C C +TF H KR H+ +P
Sbjct: 10 HTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVP 45
>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double Cys2His2
Zinc Finger From The Human Enhancer Binding Protein
Mbp-1
Length = 57
Score = 35.4 bits (80), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 23/47 (48%)
Query: 266 CPHCEKTFKRNQDLKFHLNQHTGERPYKCPFCPRTFASSGNCFSHRK 312
C C K+ LK H+ HT RPY C +C +F + GN H K
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
Score = 31.2 bits (69), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 27/50 (54%)
Query: 180 RYQCPLCNKKINTKSNLRRHLQAHKPKGKHTCEICFRIFKTEINLTRHLE 229
+Y C C + S L++H++ H + C C FKT+ NLT+H++
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 25/46 (54%)
Query: 238 CPDCNRVYPTNSTLRAHMISHSTERPHNCPHCEKTFKRNQDLKFHL 283
C +C S L+ H+ +H+ RP++C +C +FK +L H+
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHM 49
>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
Length = 60
Score = 35.0 bits (79), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 21/42 (50%)
Query: 260 TERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKCPFCPRTF 301
+ERP C C KT++ L H H G RP CP C + F
Sbjct: 1 SERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCF 42
Score = 34.7 bits (78), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 23/49 (46%)
Query: 238 CPDCNRVYPTNSTLRAHMISHSTERPHNCPHCEKTFKRNQDLKFHLNQH 286
C C + Y S L H +H RP +CP C K F+ ++ HL H
Sbjct: 7 CNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 24/51 (47%)
Query: 181 YQCPLCNKKINTKSNLRRHLQAHKPKGKHTCEICFRIFKTEINLTRHLECH 231
+ C C K S L RH +AH +C C + F+ + + RHL+ H
Sbjct: 5 FFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
Score = 27.7 bits (60), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 211 CEICFRIFKTEINLTRHLECHDTVE-LSCPDCNRVYPTNSTLRAHMISHSTE 261
C C + ++ L+RH H SCP+C + + S + H+ H +
Sbjct: 7 CNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQNK 58
>pdb|2EM2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
584- 616) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 35.0 bits (79), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 261 ERPHNCPHCEKTFKRNQDLKFHLNQHTGERP 291
E+P C C K F++N L HL HTGE+P
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLRIHTGEKP 40
>pdb|2EOG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
693- 723) Of Human Zinc Finger Protein 268
Length = 44
Score = 35.0 bits (79), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 259 STERPHNCPHCEKTFKRNQDLKFHLNQHTGERP 291
S +P+ C C K F+ L H+ HTGE+P
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
>pdb|2LV2|A Chain A, Solution Nmr Structure Of C2h2-Type Zinc-Fingers 4 And 5
From Human Insulinoma-Associated Protein 1 (Fragment
424-497), Northeast Structural Genomics Consortium
Target Hr7614b
Length = 85
Score = 34.7 bits (78), Expect = 0.075, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 24/55 (43%)
Query: 264 HNCPHCEKTFKRNQDLKFHLNQHTGERPYKCPFCPRTFASSGNCFSHRKRMHEGE 318
H CP C ++F + HL + + C +CP TF SS H + H E
Sbjct: 29 HLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCHPSE 83
Score = 32.7 bits (73), Expect = 0.32, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 176 SSGTRYQCPLCNKKINTKSNLRRHLQAHKPKGKHTCEICFRIFKTEINLTRHL-ECH 231
+S + CP+C + +K RHL+ C+ C F + LTRH+ +CH
Sbjct: 24 ASAECHLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCH 80
>pdb|2EN6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
887- 919) Of Human Zinc Finger Protein 268
Length = 46
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 261 ERPHNCPHCEKTFKRNQDLKFHLNQHTGERP 291
E+P+ C C KTF + L H HTGE+P
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTHTGEKP 40
>pdb|2YTQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
775- 807) Of Human Zinc Finger Protein 268
Length = 46
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 261 ERPHNCPHCEKTFKRNQDLKFHLNQHTGERP 291
E+P+ C C K F L H+ H+GE+P
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40
>pdb|2EQ0|A Chain A, Solution Structure Of The 8th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 347
Length = 46
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 261 ERPHNCPHCEKTFKRNQDLKFHLNQHTGERP 291
E+P+ C C K F+RN L H HTGE+P
Sbjct: 10 EKPYKCHECGKVFRRNSHLARHQLIHTGEKP 40
>pdb|2YTO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
659- 691) Of Human Zinc Finger Protein 484
Length = 46
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 261 ERPHNCPHCEKTFKRNQDLKFHLNQHTGER 290
E+P+ C C K F R L H HTGER
Sbjct: 10 EKPYKCSDCGKAFTRKSGLHIHQQSHTGER 39
>pdb|2YSV|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 17 In
Zinc Finger Protein 473
Length = 42
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 287 TGERPYKCPFCPRTFASSGNCFSHRKRMHEGETLPD 322
+GE+PY C C + F S +C S +R+H GE+ P
Sbjct: 6 SGEKPYVCQECGKAFTQS-SCLSIHRRVHTGESGPS 40
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 259 STERPHNCPHCEKTFKRNQDLKFHLNQHTGE 289
S E+P+ C C K F ++ L H HTGE
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIHRRVHTGE 36
>pdb|2EOP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
719- 751) Of Human Zinc Finger Protein 268
Length = 46
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 261 ERPHNCPHCEKTFKRNQDLKFHLNQHTGERP 291
E+PH C C K+F N L H HTGE P
Sbjct: 10 EKPHECRECGKSFSFNSQLIVHQRIHTGENP 40
>pdb|2ENA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
311- 343) Of Human Zinc Finger Protein 224
Length = 46
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 257 SHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERP 291
S + E+P C C+K+F++ L H HTGE+P
Sbjct: 6 SGTAEKPFRCDTCDKSFRQRSALNSHRMIHTGEKP 40
>pdb|2EOR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
255- 287) Of Human Zinc Finger Protein 224
Length = 46
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 261 ERPHNCPHCEKTFKRNQDLKFHLNQHTGERP 291
E+P+NC C K F + L+ H HTGE+P
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQRIHTGEKP 40
>pdb|2EM4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
724- 756) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 261 ERPHNCPHCEKTFKRNQDLKFHLNQHTGERP 291
+RP+ C C K FK L H HTGE+P
Sbjct: 10 QRPYECIECGKAFKTKSSLICHRRSHTGEKP 40
>pdb|2ELT|A Chain A, Solution Structure Of The 3rd C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 257 SHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGER 290
S S+ +P+ CP C +L HL +HTGE+
Sbjct: 3 SGSSGKPYKCPQCSYASAIKANLNVHLRKHTGEK 36
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 176 SSGTRYQCPLCNKKINTKSNLRRHLQAH 203
SSG Y+CP C+ K+NL HL+ H
Sbjct: 5 SSGKPYKCPQCSYASAIKANLNVHLRKH 32
>pdb|2EPS|A Chain A, Solution Structure Of The 4th Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 54
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 262 RPHNCPHCEKTFKRNQDLKFHLNQ-HTGERPYKC 294
+P+ C C K F R L H+ Q HT ERP+KC
Sbjct: 11 KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKC 44
>pdb|2GQJ|A Chain A, Solution Structure Of The Two Zf-C2h2 Like
Domains(493-575) Of Human Zinc Finger Protein Kiaa1196
Length = 98
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
Query: 231 HDTVELSCPDCNRVY-PTNSTLRAHM-ISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTG 288
H+ E CP CN V T L+ HM + + C HC K FK L +H
Sbjct: 20 HERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHS 79
Query: 289 ERP 291
+P
Sbjct: 80 AKP 82
>pdb|2EMV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
859- 889) Of Human Zinc Finger Protein 268
Length = 44
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 257 SHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGE 289
S + E+P+ C C K F RN L H H+GE
Sbjct: 6 SGTREKPYECSECGKAFIRNSQLIVHQRTHSGE 38
>pdb|2EP0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
528- 560) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 261 ERPHNCPHCEKTFKRNQDLKFHLNQHTGERP 291
E+P+ C C K+F+ L H HTGE+P
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQRIHTGEKP 40
>pdb|2YTI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
564- 596) Of Human Zinc Finger Protein 347
Length = 46
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 261 ERPHNCPHCEKTFKRNQDLKFHLNQHTGERP 291
E+P+ C C K F +N L H HTGE+P
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
>pdb|2YTK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
396- 428) Of Human Zinc Finger Protein 347
Length = 46
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 261 ERPHNCPHCEKTFKRNQDLKFHLNQHTGERP 291
E+P+ C C K F +N L H HTGE+P
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRIHTGEKP 40
>pdb|2EOW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
368- 400) Of Human Zinc Finger Protein 347
Length = 46
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 261 ERPHNCPHCEKTFKRNQDLKFHLNQHTGERP 291
E+P+ C C K F+ L H H+GE+P
Sbjct: 10 EKPYKCNECGKAFRARSSLAIHQATHSGEKP 40
>pdb|2EP2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
603- 635) Of Human Zinc Finger Protein 484
Length = 46
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 261 ERPHNCPHCEKTFKRNQDLKFHLNQHTGERP 291
E+P+ C C K+F + L H HTGE+P
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQIHTGEKP 40
>pdb|2EMM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
544- 576) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 261 ERPHNCPHCEKTFKRNQDLKFHLNQHTGERP 291
ERPH C C K+F ++ L H HTGE+P
Sbjct: 10 ERPHKCNECGKSFIQSAHLIQHQRIHTGEKP 40
>pdb|2YTF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
607- 639) Of Human Zinc Finger Protein 268
Length = 46
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 261 ERPHNCPHCEKTFKRNQDLKFHLNQHTGERP 291
E+P C C+K F +L H HTGE+P
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQRTHTGEKP 40
>pdb|2EPQ|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 45
Score = 32.3 bits (72), Expect = 0.40, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 259 STERPHNCPHCEKTFKRNQDLKFHLNQHTG 288
S E+P++CP C FKR + +H+ H G
Sbjct: 6 SGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
>pdb|2YTA|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 3 In
Zinc Finger Protein 32
Length = 41
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 259 STERPHNCPHCEKTFKRNQDLKFHLNQHTGERP 291
S E+P+ C C K+F + L H HTG P
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLHTGSGP 38
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 287 TGERPYKCPFCPRTFASSGNCFSHRKRMHEG 317
+GE+PY+C C ++F+ G+ H +R+H G
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVH-ERLHTG 35
>pdb|2ENF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
340- 372) Of Human Zinc Finger Protein 347
Length = 46
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 261 ERPHNCPHCEKTFKRNQDLKFHLNQHTGERP 291
E+P+ C C K F +N L H HTGE+P
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRHRGIHTGEKP 40
>pdb|2ENE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
592- 624) Of Human Zinc Finger Protein 347
Length = 46
Score = 32.0 bits (71), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 261 ERPHNCPHCEKTFKRNQDLKFHLNQHTGERP 291
E+P+ C C K F+ N L H HTGE+P
Sbjct: 10 EKPYKCNECGKVFRHNSYLSRHQRIHTGEKP 40
>pdb|1P7A|A Chain A, Solution Stucture Of The Third Zinc Finger From Bklf
Length = 37
Score = 32.0 bits (71), Expect = 0.50, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 287 TGERPYKCPFCPRTFASSGNCFSHRKR 313
TG +P++CP C R+F+ S + HRKR
Sbjct: 7 TGIKPFQCPDCDRSFSRSDHLALHRKR 33
Score = 28.5 bits (62), Expect = 5.4, Method: Composition-based stats.
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 262 RPHNCPHCEKTFKRNQDLKFHLNQH 286
+P CP C+++F R+ L H +H
Sbjct: 10 KPFQCPDCDRSFSRSDHLALHRKRH 34
>pdb|2ELY|A Chain A, Solution Structure Of The Third Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 32.0 bits (71), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 261 ERPHNCPHCEKTFKRNQDLKFHLNQHTGERP 291
E+P C C K F R L H HTGE+P
Sbjct: 10 EKPFKCVECGKGFSRRSALNVHHKLHTGEKP 40
>pdb|2EOI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
329- 359) Of Human Zinc Finger Protein 268
Length = 44
Score = 32.0 bits (71), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 17/33 (51%)
Query: 259 STERPHNCPHCEKTFKRNQDLKFHLNQHTGERP 291
S E+ H C C KTF + L H HTGE P
Sbjct: 6 SGEKLHECSECRKTFSFHSQLVIHQRIHTGENP 38
>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(781- 813) From Zinc Finger Protein 473
Length = 46
Score = 32.0 bits (71), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 261 ERPHNCPHCEKTFKRNQDLKFHLNQHTGERP 291
E+P+ C C K F + +L H HTGE+P
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIHTGEKP 40
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 289 ERPYKCPFCPRTFASSGNCFSHRKRMHEGE 318
E+PY+C C + FA N H +R+H GE
Sbjct: 10 EKPYRCGECGKAFAQKANLTQH-QRIHTGE 38
>pdb|2YTP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
687- 719) Of Human Zinc Finger Protein 484
Length = 46
Score = 31.6 bits (70), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 261 ERPHNCPHCEKTFKRNQDLKFHLNQHTGERP 291
ER + C C K F R L H HTGE+P
Sbjct: 10 ERHYECSECGKAFARKSTLIMHQRIHTGEKP 40
>pdb|2EMJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
612- 644) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 31.6 bits (70), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 261 ERPHNCPHCEKTFKRNQDLKFHLNQHTGERP 291
E+P C C K+F + L H HTGE+P
Sbjct: 10 EKPFECAECGKSFSISSQLATHQRIHTGEKP 40
>pdb|2DLK|A Chain A, Solution Structure Of The First And The Second Zf-C2h2
Domains Of Zinc Finger Protein 692
Length = 79
Score = 31.6 bits (70), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 239 PDCNRVYPTNSTLRAHM-ISHSTERPHNCPH--CEKTFKRNQDLKFHLNQHTGERPYKCP 295
P C R++ L H H ++ +CP C K+F + LK H+ H+ R Y C
Sbjct: 13 PGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICE 72
Query: 296 F 296
F
Sbjct: 73 F 73
>pdb|2EMA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
312- 344) Of Human Zinc Finger Protein 347
Length = 46
Score = 31.6 bits (70), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 261 ERPHNCPHCEKTFKRNQDLKFHLNQHTGERP 291
E+ + C C K F RN L H HTGE+P
Sbjct: 10 EKRYKCNECGKVFSRNSQLSQHQKIHTGEKP 40
>pdb|2EQ1|A Chain A, Solution Structure Of The 9th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 347
Length = 46
Score = 31.6 bits (70), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 261 ERPHNCPHCEKTFKRNQDLKFHLNQHTGERP 291
E+P+ C C K F+ + +L H HTGE+P
Sbjct: 10 EKPYKCNECGKAFRAHSNLTTHQVIHTGEKP 40
>pdb|2EME|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
725- 757) Of Human Zinc Finger Protein 473
Length = 46
Score = 31.2 bits (69), Expect = 0.83, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 261 ERPHNCPHCEKTFKRNQDLKFHLNQHTGERP 291
E+P+ C +C K F + +L H HTGE+P
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIHTGEKP 40
Score = 28.5 bits (62), Expect = 5.7, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 289 ERPYKCPFCPRTFASSGNCFSHRKRMHEGE 318
E+PY C +C + F S H +R+H GE
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRH-QRIHTGE 38
>pdb|2EM3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
640- 672) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 31.2 bits (69), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 261 ERPHNCPHCEKTFKRNQDLKFHLNQHTGERP 291
E+P+ C C K F + L H HTGE+P
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40
>pdb|2CT1|A Chain A, Solution Structure Of The Zinc Finger Domain Of
Transcriptional Repressor Ctcf Protein
Length = 77
Score = 31.2 bits (69), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Query: 257 SHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYK--CPFCPRTFASSGNCFSHRKRM 314
+HS E+P+ C C F ++ +K H+ Q E K CP C A + H ++
Sbjct: 9 THSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQ 68
Query: 315 HE 316
H
Sbjct: 69 HS 70
>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
760- 792) Of Human Zinc Finger Protein 347
Length = 46
Score = 31.2 bits (69), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 261 ERPHNCPHCEKTFKRNQDLKFHLNQHTGERP 291
E+P+ C C K F + L H HTGE+P
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIHTGEKP 40
>pdb|2YTN|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
732- 764) Of Human Zinc Finger Protein 347
Length = 46
Score = 31.2 bits (69), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 261 ERPHNCPHCEKTFKRNQDLKFHLNQHTGERP 291
++P+ C C K F +N L H HTGE+P
Sbjct: 10 KKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
752- 784) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 31.2 bits (69), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 261 ERPHNCPHCEKTFKRNQDLKFHLNQHTGERP 291
E+P+ C C K F Q L H H+G++P
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40
>pdb|2YSP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
507- 539) Of Human Zinc Finger Protein 224
Length = 46
Score = 31.2 bits (69), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 261 ERPHNCPHCEKTFKRNQDLKFHLNQHTGERP 291
E+P+ C C K + +L H HTGERP
Sbjct: 10 EKPYKCEKCGKGYNSKFNLDMHQKVHTGERP 40
>pdb|2EN1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
563- 595) Of Human Zinc Finger Protein 224
Length = 46
Score = 31.2 bits (69), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 261 ERPHNCPHCEKTFKRNQDLKFHLNQHTGERP 291
E+P C C K F +N L H HTGE+P
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRVHTGEKP 40
>pdb|2EP1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
435- 467) Of Human Zinc Finger Protein 484
Length = 46
Score = 31.2 bits (69), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 261 ERPHNCPHCEKTFKRNQDLKFHLNQHTGERP 291
E+P+ C C K+F + L H HTGE P
Sbjct: 10 EKPYECSDCGKSFIKKSQLHVHQRIHTGENP 40
>pdb|2EM9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
367- 399) Of Human Zinc Finger Protein 224
Length = 46
Score = 30.8 bits (68), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 261 ERPHNCPHCEKTFKRNQDLKFHLNQHTGERP 291
E+P+NC C K+F+ L H H+GE+P
Sbjct: 10 EKPYNCKECGKSFRWASCLLKHQRVHSGEKP 40
>pdb|3FLO|B Chain B, Crystal Structure Of The Carboxyl-Terminal Domain Of Yeast
Dna Polymerase Alpha In Complex With Its B Subunit
pdb|3FLO|D Chain D, Crystal Structure Of The Carboxyl-Terminal Domain Of Yeast
Dna Polymerase Alpha In Complex With Its B Subunit
pdb|3FLO|F Chain F, Crystal Structure Of The Carboxyl-Terminal Domain Of Yeast
Dna Polymerase Alpha In Complex With Its B Subunit
pdb|3FLO|H Chain H, Crystal Structure Of The Carboxyl-Terminal Domain Of Yeast
Dna Polymerase Alpha In Complex With Its B Subunit
Length = 206
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 233 TVELSCPDCNRVYPTNSTLRAHMISHSTERPHNCPHCEKTF 273
T+ELSCP C++ +P + ++ S C HCE+ F
Sbjct: 20 TLELSCPSCDKRFPFGGIVSSNYYRVSYNGLQ-CKHCEQLF 59
>pdb|2EOV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
519- 551) Of Human Zinc Finger Protein 484
Length = 46
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 261 ERPHNCPHCEKTFKRNQDLKFHLNQHTGER 290
E+P+ C C K+F L+ H HTGER
Sbjct: 10 EKPYKCSDCGKSFTWKSRLRIHQKCHTGER 39
>pdb|2EMG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
463- 495) Of Human Zinc Finger Protein 484
Length = 46
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 15/31 (48%)
Query: 261 ERPHNCPHCEKTFKRNQDLKFHLNQHTGERP 291
E P C C K F +L H HTGERP
Sbjct: 10 ENPFICSECGKVFTHKTNLIIHQKIHTGERP 40
>pdb|2EP3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
631- 663) Of Human Zinc Finger Protein 484
Length = 46
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 261 ERPHNCPHCEKTFKRNQDLKFHLNQHTGERP 291
E+P+ C C K F +L H HTGE+P
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQKIHTGEKP 40
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 289 ERPYKCPFCPRTFASSGNCFSHRKRMHEGE 318
E+PY+C C + F N F+H+K +H GE
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQK-IHTGE 38
>pdb|2YTB|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 5 In
Zinc Finger Protein 32
Length = 42
Score = 30.8 bits (68), Expect = 1.3, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 261 ERPHNCPHCEKTFKRNQDLKFHLNQHTGERP 291
E+P+ C C K F + L H+ HTG P
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
>pdb|2EL4|A Chain A, Solution Structure Of The 15th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 30.8 bits (68), Expect = 1.3, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 262 RPHNCPHCEKTFKRNQDLKFHLNQHTGERP 291
+P+ C C KTF L H HTG +P
Sbjct: 11 KPYGCSQCAKTFSLKSQLIVHQRSHTGVKP 40
>pdb|2EMH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
491- 523) Of Human Zinc Finger Protein 484
Length = 46
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 261 ERPHNCPHCEKTFKRNQDLKFHLNQHTGERP 291
ERP+ C C K F +L H HTGE+P
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 289 ERPYKCPFCPRTFASSGNCFSHRKRMHEGE 318
ERPY C C + F N H+K +H GE
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQK-IHTGE 38
>pdb|2YTH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
479- 511) Of Human Zinc Finger Protein 224
Length = 46
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 261 ERPHNCPHCEKTFKRNQDLKFHLNQHTGERP 291
E+P C C K F +N L H HTGE+P
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRVHTGEKP 40
>pdb|2YTM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
696- 728) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 261 ERPHNCPHCEKTFKRNQDLKFHLNQHTGERP 291
E+P+ C C K F N H HTG+RP
Sbjct: 10 EKPYKCMECGKAFGDNSSCTQHQRLHTGQRP 40
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 289 ERPYKCPFCPRTFASSGNCFSHRKRMHEGE 318
E+PYKC C + F + +C H +R+H G+
Sbjct: 10 EKPYKCMECGKAFGDNSSCTQH-QRLHTGQ 38
>pdb|2EM7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
339- 371) Of Human Zinc Finger Protein 224
Length = 46
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 261 ERPHNCPHCEKTFKRNQDLKFHLNQHTGERP 291
E+P+ C C K F +DL H HTGE+P
Sbjct: 10 EKPYKCEECGKGFICRRDLYTHHMVHTGEKP 40
>pdb|2EOL|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
581- 609) Of Human Zinc Finger Protein 268
Length = 42
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 15/31 (48%)
Query: 259 STERPHNCPHCEKTFKRNQDLKFHLNQHTGE 289
S E+P+ C C K F L H HTGE
Sbjct: 6 SGEKPYECTDCGKAFGLKSQLIIHQRTHTGE 36
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 287 TGERPYKCPFCPRTFASSGNCFSHRKRMHEGETLP 321
+GE+PY+C C + F H+ R H GE+ P
Sbjct: 6 SGEKPYECTDCGKAFGLKSQLIIHQ-RTHTGESGP 39
>pdb|2EMK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
668- 700) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 261 ERPHNCPHCEKTFKRNQDLKFHLNQHTGERP 291
E+P+ C C K F + L H HTGE+P
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQRVHTGEKP 40
>pdb|2YU8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
648- 680) Of Human Zinc Finger Protein 347
Length = 46
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 261 ERPHNCPHCEKTFKRNQDLKFHLNQHTGERP 291
E+P+ C C K F +N L H HTG +P
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRRVHTGGKP 40
>pdb|2EOS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
626- 654) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 261 ERPHNCPHCEKTFKRNQDLKFHLNQHTGERP 291
E+P+ C C F+ Q LK HL HTG P
Sbjct: 9 EKPYPCEICGTRFRHLQTLKSHLRIHTGSGP 39
>pdb|2YTD|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
426- 458) Of Human Zinc Finger Protein 473
Length = 46
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 261 ERPHNCPHCEKTFKRNQDLKFHLNQHTGERP 291
E+P+ C C K F R+ L H HTG RP
Sbjct: 10 EKPYKCSECGKAFHRHTHLNEHRRIHTGYRP 40
>pdb|2EPU|A Chain A, Solution Structure Of The Secound C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 45
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 261 ERPHNCPHCEKTFKRNQDLKFHLNQHTGER 290
++P C HC K+F+ +L H HTGE+
Sbjct: 10 QKPFECTHCGKSFRAKGNLVTHQRIHTGEK 39
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 289 ERPYKCPFCPRTFASSGNCFSHRKRMHEGE 318
++P++C C ++F + GN +H +R+H GE
Sbjct: 10 QKPFECTHCGKSFRAKGNLVTH-QRIHTGE 38
>pdb|2EOF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
411- 441) Of Human Zinc Finger Protein 268
Length = 44
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 261 ERPHNCPHCEKTFKRNQDLKFHLNQHTGE 289
E+P+ C C+K F +L H HTGE
Sbjct: 10 EKPYECNECQKAFNTKSNLMVHQRTHTGE 38
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 289 ERPYKCPFCPRTFASSGNCFSHRKRMHEGETLPD 322
E+PY+C C + F + N H+ R H GE+ P
Sbjct: 10 EKPYECNECQKAFNTKSNLMVHQ-RTHTGESGPS 42
Score = 27.7 bits (60), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 181 YQCPLCNKKINTKSNLRRHLQAH 203
Y+C C K NTKSNL H + H
Sbjct: 13 YECNECQKAFNTKSNLMVHQRTH 35
>pdb|2EM1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
637- 667) Of Human Zinc Finger Protein 268
Length = 44
Score = 30.0 bits (66), Expect = 2.1, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 259 STERPHNCPHCEKTFKRNQDLKFHLNQHTGERP 291
S E+P++C C K F L H HTG +P
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38
>pdb|2EQ2|A Chain A, Solution Structure Of The 16th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 262 RPHNCPHCEKTFKRNQDLKFHLNQHTGERP 291
+P+ C C K F + L H HTGE+P
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEKP 40
>pdb|2EOE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
508- 540) Of Human Zinc Finger Protein 347
Length = 46
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 261 ERPHNCPHCEKTFKRNQDLKFHLNQHTGERP 291
E+P+ C C K F +N L H HTG +P
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRIHTGVKP 40
>pdb|2M0E|A Chain A, Solution Structure Of Miz-1 Zinc Finger 6
Length = 29
Score = 29.6 bits (65), Expect = 2.3, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 262 RPHNCPHCEKTFKRNQDLKFHLNQHTGE 289
+ H CPHC+K F + +LK HL H +
Sbjct: 1 KEHKCPHCDKKFNQVGNLKAHLKIHIAD 28
Score = 28.1 bits (61), Expect = 7.1, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 181 YQCPLCNKKINTKSNLRRHLQAHKPKG 207
++CP C+KK N NL+ HL+ H G
Sbjct: 3 HKCPHCDKKFNQVGNLKAHLKIHIADG 29
>pdb|2EN4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
284- 316) Of Human Zinc Finger Protein 347
Length = 46
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 257 SHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGER 290
S + E+P+ C C K F+ +L H HTGE+
Sbjct: 6 SGTKEKPYKCYECGKAFRTRSNLTTHQVIHTGEK 39
>pdb|2CTD|A Chain A, Solution Structure Of Two Zf-C2h2 Domains From Human Zinc
Finger Protein 512
Length = 96
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 227 HLECHDTVELSCPDCNRVY-PTNSTLRAHMISHSTERPHNCPHCEKTFKRNQDLKFHL 283
+LE D +SCP C V T L+ HM + + C HC K + +K+H+
Sbjct: 26 YLEIVDKGSVSCPTCQAVGRKTIEGLKKHM-ENCKQEMFTCHHCGKQLRSLAGMKYHV 82
>pdb|2EON|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
397- 429) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 29.6 bits (65), Expect = 2.5, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 261 ERPHNCPHCEKTFKRNQDLKFHLNQHTGERP 291
E+P+ C C K F+ + L H + H+GERP
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQHHSVHSGERP 40
>pdb|2EPT|A Chain A, Solution Structure Of The First C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 41
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 259 STERPHNCPHCEKTFKRNQDLKFHLNQHTGERP 291
S +R + C C K+F++ L H HTG P
Sbjct: 6 SGQRVYECQECGKSFRQKGSLTLHERIHTGSGP 38
>pdb|1U85|A Chain A, Arg326-Trp Mutant Of The Third Zinc Finger Of Bklf
Length = 33
Score = 29.6 bits (65), Expect = 2.6, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 287 TGERPYKCPFCPRTFASSGNCFSHRKR 313
TG +P++CP C +F+ S + HRKR
Sbjct: 3 TGIKPFQCPDCDWSFSRSDHLALHRKR 29
>pdb|2EMW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
301- 331) Of Human Zinc Finger Protein 268
Length = 44
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 259 STERPHNCPHCEKTFKRNQDLKFHLNQHTGER 290
S E+P+ C C K F L H HTGE+
Sbjct: 6 SGEKPYGCNECGKDFSSKSYLIVHQRIHTGEK 37
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 287 TGERPYKCPFCPRTFASSGNCFSHRKRMHEGETL 320
+GE+PY C C + F+S H+ R+H GE L
Sbjct: 6 SGEKPYGCNECGKDFSSKSYLIVHQ-RIHTGEKL 38
>pdb|2EN9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
415- 447) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 266 CPHCEKTFKRNQDLKFHLNQHTGERP 291
C C+KTF ++ L H HTGE+P
Sbjct: 15 CNECKKTFTQSSSLTVHQRIHTGEKP 40
>pdb|2EQ3|A Chain A, Solution Structure Of The 17th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 261 ERPHNCPHCEKTFKRNQDLKFHLNQHTGERP 291
E+P+ C C K F L H HTG++P
Sbjct: 10 EKPYECNQCGKAFSVRSSLTTHQAIHTGKKP 40
>pdb|2EMY|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
551- 583) Of Human Zinc Finger Protein 268
Length = 46
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 15/31 (48%)
Query: 261 ERPHNCPHCEKTFKRNQDLKFHLNQHTGERP 291
E P+ C C K F R L H H GE+P
Sbjct: 10 ENPYECHECGKAFSRKYQLISHQRTHAGEKP 40
>pdb|1XF7|A Chain A, High Resolution Nmr Structure Of The Wilms' Tumor
Suppressor Protein (Wt1) Finger 3
Length = 29
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 262 RPHNCPHCEKTFKRNQDLKFHLNQHTGER 290
+P C C++ F R+ LK H HTGE+
Sbjct: 1 KPFQCKTCQRKFSRSDHLKTHTRTHTGEK 29
>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein
Kinase C Beta Ii
Length = 674
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 9/60 (15%)
Query: 211 CEICFRIFKTEINLTRHLECHDTVELSCPDCNRVYPTNSTLRAHMIS-HSTERPHNCPHC 269
C++C + H CH+ V SCP ++ ++ H H+ P C HC
Sbjct: 68 CQVC--------SFVVHKRCHEFVTFSCPGADKGPASDDPRSKHKFKIHTYSSPTFCDHC 119
>pdb|2EL5|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 42
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 14/31 (45%)
Query: 259 STERPHNCPHCEKTFKRNQDLKFHLNQHTGE 289
S E P+ C C K F R L H H GE
Sbjct: 6 SGENPYECSECGKAFNRKDQLISHQRTHAGE 36
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 287 TGERPYKCPFCPRTFASSGNCFSHRKRMHEGETLP 321
+GE PY+C C + F SH +R H GE+ P
Sbjct: 6 SGENPYECSECGKAFNRKDQLISH-QRTHAGESGP 39
>pdb|2EM0|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 261 ERPHNCPHCEKTFKRNQDLKFHLNQHTGERP 291
E+ C C+ F + L+ H N H GE+P
Sbjct: 10 EKTWKCRECDMCFSQASSLRLHQNVHVGEKP 40
>pdb|2ENC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
395- 427) Of Human Zinc Finger Protein 224
Length = 46
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 289 ERPYKCPFCPRTFASSGNCFSHRKRMHEGE 318
E+P+KC C + F ++ C+SH+ R H GE
Sbjct: 10 EKPFKCEECGKGFYTNSQCYSHQ-RSHSGE 38
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 261 ERPHNCPHCEKTFKRNQDLKFHLNQHTGERP 291
E+P C C K F N H H+GE+P
Sbjct: 10 EKPFKCEECGKGFYTNSQCYSHQRSHSGEKP 40
>pdb|2EMF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
379- 411) Of Human Zinc Finger Protein 484
Length = 46
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 13/26 (50%)
Query: 266 CPHCEKTFKRNQDLKFHLNQHTGERP 291
C C K F R L H HTGE+P
Sbjct: 15 CTECGKAFTRKSTLSMHQKIHTGEKP 40
>pdb|2EJ4|A Chain A, Functional And Structural Basis Of Nuclear Localization
Signal In Zic3 Zinc Finger Domain: A Role Of Conserved
Tryptophan Residue In The Zinc Finger Domain
Length = 95
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 28/70 (40%), Gaps = 11/70 (15%)
Query: 232 DTVELSCP--DCNRVYPTNSTLRAHMISHSTERPHN---------CPHCEKTFKRNQDLK 280
D +LS P C+R + T L H+ P CP K+FK L
Sbjct: 20 DEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLV 79
Query: 281 FHLNQHTGER 290
H+ HTGE+
Sbjct: 80 NHIRVHTGEK 89
>pdb|2YRH|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(699- 729) From Zinc Finger Protein 473
Length = 44
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 259 STERPHNCPHCEKTFKRNQDLKFHLNQHTGERP 291
S ++P C C KTF+++ L H H+GE+P
Sbjct: 6 SGKKPLVCNECGKTFRQSSCLSKHQRIHSGEKP 38
>pdb|2ENH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
556- 588) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 261 ERPHNCPHCEKTFKRNQDLKFHLNQHTGERP 291
E+P+ C C K F + L H H+GE+P
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQRVHSGEKP 40
>pdb|2ELQ|A Chain A, Solution Structure Of The 14th C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 257 SHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGER 290
S S+ +P C CE + +LK H+N+H+ E+
Sbjct: 3 SGSSGKPFKCSLCEYATRSKSNLKAHMNRHSTEK 36
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 176 SSGTRYQCPLCNKKINTKSNLRRHLQAH 203
SSG ++C LC +KSNL+ H+ H
Sbjct: 5 SSGKPFKCSLCEYATRSKSNLKAHMNRH 32
>pdb|2DRP|A Chain A, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
pdb|2DRP|D Chain D, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
Length = 66
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 181 YQCPLCNKKINTKSNLRRH-LQAHKPKGK-HTCEICFRIFKTEINLTRHLE 229
Y+C +C++ SN RH + +HK K + C CF+ F + N+T H++
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVK 61
>pdb|2EPZ|A Chain A, Solution Structure Of The 4th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 28 Homolog
Length = 46
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 261 ERPHNCPHCEKTFKRNQDLKFHLNQHTGERP 291
E+P +C C K F + L H HTGE+P
Sbjct: 10 EKPFDCIDCGKAFSDHIGLNQHRRIHTGEKP 40
>pdb|2YTS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
715- 747) Of Human Zinc Finger Protein 484
Length = 46
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 261 ERPHNCPHCEKTFKRNQDLKFHLNQHTGERP 291
E+P+ C C K+F + L H HTGE+P
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIHTGEKP 40
>pdb|2YTE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
484- 512) Of Human Zinc Finger Protein 473
Length = 42
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 259 STERPHNCPHCEKTFKRNQDLKFHLNQHT 287
S E+P++C C++TF N L H HT
Sbjct: 6 SGEKPYSCAECKETFSDNNRLVQHQKMHT 34
>pdb|2EMP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
536- 568) Of Human Zinc Finger Protein 347
Length = 46
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 262 RPHNCPHCEKTFKRNQDLKFHLNQHTGERP 291
+P+ C C K F L H HTGE+P
Sbjct: 11 KPYMCNECGKAFSVYSSLTTHQVIHTGEKP 40
>pdb|2LVR|A Chain A, Solution Structure Of Miz-1 Zinc Finger 8
Length = 30
Score = 28.5 bits (62), Expect = 5.5, Method: Composition-based stats.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 262 RPHNCPHCEKTFKRNQDLKFHLNQHTGER 290
+P+ C HC++ F L+ H+ HTGE+
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGEK 30
>pdb|2ELZ|A Chain A, Solution Structure Of The 17th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 260 TERPHNCPHCEKTFKRNQDLKFHLNQHTGER 290
E+P+ C C K + R +L H H GE+
Sbjct: 9 VEKPYKCEDCGKGYNRRLNLDMHQRVHMGEK 39
>pdb|2EL6|A Chain A, Solution Structure Of The 21th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 28.1 bits (61), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 263 PHNCPHCEKTFKRNQDLKFHLNQHTGERP 291
P+ C CEK+F L H HT E+P
Sbjct: 12 PYKCSQCEKSFSGKLRLLVHQRMHTREKP 40
>pdb|2LVT|A Chain A, Solution Structure Of Miz-1 Zinc Finger 9
Length = 29
Score = 28.1 bits (61), Expect = 6.7, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 262 RPHNCPHCEKTFKRNQDLKFHLNQHTGER 290
+P C C K F + L H+ QHTGE+
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29
>pdb|2EMX|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
273- 303) Of Human Zinc Finger Protein 268
Length = 44
Score = 28.1 bits (61), Expect = 6.8, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 15/33 (45%)
Query: 259 STERPHNCPHCEKTFKRNQDLKFHLNQHTGERP 291
S E+P C CEK F L H H E+P
Sbjct: 6 SGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKP 38
>pdb|1YUI|A Chain A, Solution Nmr Structure Of The Gaga FactorDNA COMPLEX,
Regularized Mean Structure
pdb|1YUJ|A Chain A, Solution Nmr Structure Of The Gaga FactorDNA COMPLEX, 50
Structures
Length = 54
Score = 28.1 bits (61), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 210 TCEICFRIFKTEINLTRHLE 229
TC IC+ + + NL RHLE
Sbjct: 26 TCPICYAVIRQSRNLRRHLE 45
>pdb|2EQW|A Chain A, Solution Structure Of The 6th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 484
Length = 42
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 287 TGERPYKCPFCPRTFASSGNCFSHRKRMHEGETLPD 322
+GE+PY C C + F + +H +R+H GE+ P
Sbjct: 6 SGEKPYVCTECGKAFIRKSHFITH-ERIHTGESGPS 40
Score = 27.7 bits (60), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 15/31 (48%)
Query: 259 STERPHNCPHCEKTFKRNQDLKFHLNQHTGE 289
S E+P+ C C K F R H HTGE
Sbjct: 6 SGEKPYVCTECGKAFIRKSHFITHERIHTGE 36
>pdb|2EQ4|A Chain A, Solution Structure Of The 11th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 224
Length = 46
Score = 28.1 bits (61), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 261 ERPHNCPHCEKTFKRNQDLKFHLNQHTGERP 291
E+ +NC C K+F R L H H+GE+P
Sbjct: 10 EKLYNCKECGKSFSRAPCLLKHERLHSGEKP 40
>pdb|2ELS|A Chain A, Solution Structure Of The 2nd C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 28.1 bits (61), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 257 SHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGER 290
S S+ + C +C K FK L+ HL HT E+
Sbjct: 3 SGSSGKIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
>pdb|2EOM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
341- 373) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 27.7 bits (60), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 261 ERPHNCPHCEKTFKRNQDLKFHLNQHTGERP 291
ER H C C K F + + H HTGE+P
Sbjct: 10 ERGHRCSDCGKFFLQASNFIQHRRIHTGEKP 40
>pdb|1WIR|A Chain A, Solution Structure Of The C2h2 Zinc Finger Domain Of The
Protein Arginine N-methyltransferase 3 From Mus Musculus
Length = 121
Score = 27.7 bits (60), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 5/35 (14%)
Query: 282 HLNQHTGERPYKCPFCPRTFASSGNCFSHRKRMHE 316
H QHT C FC R FAS+ FSH K H+
Sbjct: 11 HGRQHT-----PCLFCDRLFASAEETFSHCKLEHQ 40
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,684,819
Number of Sequences: 62578
Number of extensions: 394897
Number of successful extensions: 1930
Number of sequences better than 100.0: 183
Number of HSP's better than 100.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1053
Number of HSP's gapped (non-prelim): 775
length of query: 337
length of database: 14,973,337
effective HSP length: 99
effective length of query: 238
effective length of database: 8,778,115
effective search space: 2089191370
effective search space used: 2089191370
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)