RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13793
(337 letters)
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 92.0 bits (229), Expect = 7e-23
Identities = 38/148 (25%), Positives = 56/148 (37%), Gaps = 17/148 (11%)
Query: 186 CNKKINTKSNLRRHLQAHKPKGKHTCEICFRIFKTEINLTRHLECHDTVE---------- 235
+ + + C R F T L H+ V
Sbjct: 3 SGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTME-HVGGPEQNNHVCY 61
Query: 236 -LSCPDCNRVYPTNSTLRAHMISHSTERPHNCPH--CEKTFKRNQDLKFHLNQHTGERPY 292
CP + + L H+ H+ E+P CP C K F R+++LK H HTGE+P+
Sbjct: 62 WEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPF 121
Query: 293 KCPF--CPRTFASSGNCFSHRKRMHEGE 318
KC F C R FA+S + H +H +
Sbjct: 122 KCEFEGCDRRFANSSDRKKH-MHVHTSD 148
Score = 76.2 bits (188), Expect = 5e-17
Identities = 29/129 (22%), Positives = 53/129 (41%), Gaps = 16/129 (12%)
Query: 181 YQCPLCNKKINTKSNLRRHLQAH---KPKGKHT------CEICFRIFKTEINLTRHLECH 231
C++ +T L H+ P+ + C + FK + L H+ H
Sbjct: 26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVH 85
Query: 232 DTVE--LSC--PDCNRVYPTNSTLRAHMISHSTERPHNCPH--CEKTFKRNQDLKFHLNQ 285
T E C P C +++ + L+ H +H+ E+P C C++ F + D K H++
Sbjct: 86 -TGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHV 144
Query: 286 HTGERPYKC 294
HT ++
Sbjct: 145 HTSDKSGPS 153
Score = 56.9 bits (138), Expect = 4e-10
Identities = 14/88 (15%), Positives = 26/88 (29%), Gaps = 10/88 (11%)
Query: 240 DCNRVYPTNSTLRAHMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYK------ 293
+ + C++TF +L H+ P +
Sbjct: 2 SSGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCY 61
Query: 294 ---CPFCPRTFASSGNCFSHRKRMHEGE 318
CP ++F + +H R+H GE
Sbjct: 62 WEECPREGKSFKAKYKLVNH-IRVHTGE 88
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 89.2 bits (222), Expect = 8e-22
Identities = 35/145 (24%), Positives = 60/145 (41%), Gaps = 29/145 (20%)
Query: 181 YQCPLCNKKINTKSNLRRHLQA---HKPKGKHTCEICFRIFKTEINLTRHLECHDTVELS 237
+ C+++ +++ L H+ + H + + C
Sbjct: 4 CRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWG----------------------G 41
Query: 238 CPDCNRVYPTNSTLRAHMISHSTERPHNCPH--CEKTFKRNQDLKFHLNQHTGERPYKCP 295
C R + L HM H+ E+PH C C K++ R ++LK HL HTGE+PY C
Sbjct: 42 CSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCE 101
Query: 296 F--CPRTFASSGNCFSHRKRMHEGE 318
C + F+++ + H+ R H E
Sbjct: 102 HEGCSKAFSNASDRAKHQNRTHSNE 126
Score = 52.2 bits (126), Expect = 1e-08
Identities = 15/66 (22%), Positives = 22/66 (33%), Gaps = 9/66 (13%)
Query: 261 ERPHNCPHCEKTFKRNQDLKFHLNQ---HTGERPYKCPFC-----PRTFASSGNCFSHRK 312
E C + F + L H+N H + + C + R F + H
Sbjct: 1 ETDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVH-M 59
Query: 313 RMHEGE 318
R H GE
Sbjct: 60 RRHTGE 65
Score = 51.4 bits (124), Expect = 3e-08
Identities = 31/118 (26%), Positives = 46/118 (38%), Gaps = 16/118 (13%)
Query: 183 CPLCNKKINTKSNLRRHLQAH---KPKGKHTCEI--CFRIFKTEINLTRHLECHDTVE-- 235
C + + L H++ H KP H C C + + NL HL H T E
Sbjct: 42 CSRELRPFKAQYMLVVHMRRHTGEKP---HKCTFEGCRKSYSRLENLKTHLRSH-TGEKP 97
Query: 236 LSC--PDCNRVYPTNSTLRAHMI-SHSTERPHNC--PHCEKTFKRNQDLKFHLNQHTG 288
C C++ + S H +HS E+P+ C P C K + L+ H+ G
Sbjct: 98 YMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG 155
Score = 34.5 bits (80), Expect = 0.016
Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 14/90 (15%)
Query: 181 YQCPL--CNKKINTKSNLRRHLQAH---KPKGKHTCE--ICFRIFKTEINLTRHLECHDT 233
++C C K + NL+ HL++H KP + CE C + F + +H +
Sbjct: 68 HKCTFEGCRKSYSRLENLKTHLRSHTGEKP---YMCEHEGCSKAFSNASDRAKHQNRTHS 124
Query: 234 VE----LSCPDCNRVYPTNSTLRAHMISHS 259
E P C + Y S+LR H+ +
Sbjct: 125 NEKPYVCKLPGCTKRYTDPSSLRKHVKTVH 154
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 88.7 bits (221), Expect = 3e-21
Identities = 54/143 (37%), Positives = 77/143 (53%), Gaps = 10/143 (6%)
Query: 181 YQCPLCNKKINTKSNLRRHLQAH---KPKGKHTCEICFRIFKTEINLTRHLECHDTVE-- 235
Y+CP C K + K +L RH + H KP + C C + F NL H H T E
Sbjct: 50 YKCPECGKSFSDKKDLTRHQRTHTGEKP---YKCPECGKSFSQRANLRAHQRTH-TGEKP 105
Query: 236 LSCPDCNRVYPTNSTLRAHMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKCP 295
+CP+C + + + LRAH +H+ E+P+ CP C K+F R +L H HTGE+PYKCP
Sbjct: 106 YACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCP 165
Query: 296 FCPRTFASSGNCFSHRKRMHEGE 318
C ++F+ H +R H G+
Sbjct: 166 ECGKSFSRRDALNVH-QRTHTGK 187
Score = 88.3 bits (220), Expect = 4e-21
Identities = 54/143 (37%), Positives = 78/143 (54%), Gaps = 10/143 (6%)
Query: 181 YQCPLCNKKINTKSNLRRHLQAH---KPKGKHTCEICFRIFKTEINLTRHLECHDTVE-- 235
Y CP C K + +L H + H KP + C C + F + +LTRH H T E
Sbjct: 22 YACPECGKSFSRSDHLAEHQRTHTGEKP---YKCPECGKSFSDKKDLTRHQRTH-TGEKP 77
Query: 236 LSCPDCNRVYPTNSTLRAHMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKCP 295
CP+C + + + LRAH +H+ E+P+ CP C K+F + L+ H HTGE+PYKCP
Sbjct: 78 YKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCP 137
Query: 296 FCPRTFASSGNCFSHRKRMHEGE 318
C ++F+ N +H +R H GE
Sbjct: 138 ECGKSFSREDNLHTH-QRTHTGE 159
Score = 69.0 bits (170), Expect = 3e-14
Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 248 NSTLRAHMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKCPFCPRTFASSGNC 307
+S+ A E+P+ CP C K+F R+ L H HTGE+PYKCP C ++F+ +
Sbjct: 6 SSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDL 65
Query: 308 FSHRKRMHEGE 318
H +R H GE
Sbjct: 66 TRH-QRTHTGE 75
Score = 64.8 bits (159), Expect = 1e-12
Identities = 39/116 (33%), Positives = 57/116 (49%), Gaps = 9/116 (7%)
Query: 181 YQCPLCNKKINTKSNLRRHLQAH---KPKGKHTCEICFRIFKTEINLTRHLECHDTVE-- 235
Y+CP C K + ++NLR H + H KP + C C + F +L H H T E
Sbjct: 78 YKCPECGKSFSQRANLRAHQRTHTGEKP---YACPECGKSFSQLAHLRAHQRTH-TGEKP 133
Query: 236 LSCPDCNRVYPTNSTLRAHMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERP 291
CP+C + + L H +H+ E+P+ CP C K+F R L H HTG++
Sbjct: 134 YKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGKKT 189
Score = 45.9 bits (110), Expect = 4e-06
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 272 TFKRNQDLKFHLNQHTGERPYKCPFCPRTFASSGNCFSHRKRMHEGE 318
+ + GE+PY CP C ++F+ S + H +R H GE
Sbjct: 2 SEFGSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEH-QRTHTGE 47
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 82.7 bits (205), Expect = 6e-20
Identities = 29/79 (36%), Positives = 47/79 (59%), Gaps = 2/79 (2%)
Query: 237 SCPDCNRVYPTNSTLRAHMISHSTERPHNC--PHCEKTFKRNQDLKFHLNQHTGERPYKC 294
P C +VY +S L+AH+ +H+ E+P+ C C+ F R+ +L H +HTG +P++C
Sbjct: 19 DYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQC 78
Query: 295 PFCPRTFASSGNCFSHRKR 313
C R+F+ S + H KR
Sbjct: 79 GVCNRSFSRSDHLALHMKR 97
Score = 49.2 bits (118), Expect = 5e-08
Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 7/86 (8%)
Query: 208 KHTCEI--CFRIFKTEINLTRHLECHDTVE--LSC--PDCNRVYPTNSTLRAHMISHSTE 261
H C+ C +++ +L HL H T E C C+ + + L H H+
Sbjct: 15 IHYCDYPGCTKVYTKSSHLKAHLRTH-TGEKPYKCTWEGCDWRFARSDELTRHYRKHTGA 73
Query: 262 RPHNCPHCEKTFKRNQDLKFHLNQHT 287
+P C C ++F R+ L H+ +H
Sbjct: 74 KPFQCGVCNRSFSRSDHLALHMKRHQ 99
Score = 27.6 bits (62), Expect = 2.1
Identities = 7/24 (29%), Positives = 14/24 (58%)
Query: 180 RYQCPLCNKKINTKSNLRRHLQAH 203
+QC +CN+ + +L H++ H
Sbjct: 75 PFQCGVCNRSFSRSDHLALHMKRH 98
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 81.0 bits (201), Expect = 2e-19
Identities = 28/79 (35%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 237 SCPDCNRVYPTNSTLRAHMISHSTERPHNC--PHCEKTFKRNQDLKFHLNQHTGERPYKC 294
C + Y +S L+AH+ +H+ E+P++C C F R+ +L H +HTG RP++C
Sbjct: 9 DYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQC 68
Query: 295 PFCPRTFASSGNCFSHRKR 313
C R F+ S + H KR
Sbjct: 69 QKCDRAFSRSDHLALHMKR 87
Score = 61.4 bits (150), Expect = 2e-12
Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Query: 258 HSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKC--PFCPRTFASSGNCFSHRKRMH 315
+ + C KT+ ++ LK HL HTGE+PY C C FA S H R H
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRH-YRKH 60
Query: 316 EGE 318
G
Sbjct: 61 TGH 63
Score = 44.8 bits (107), Expect = 2e-06
Identities = 23/110 (20%), Positives = 35/110 (31%), Gaps = 31/110 (28%)
Query: 180 RYQCPLCNKKINTKSNLRRHLQAH---KPKGKHTCEICFRIFKTEINLTRHLECHDTVEL 236
C K S+L+ HL+ H KP + C
Sbjct: 7 TCDYAGCGKTYTKSSHLKAHLRTHTGEKP---YHC------------------------- 38
Query: 237 SCPDCNRVYPTNSTLRAHMISHSTERPHNCPHCEKTFKRNQDLKFHLNQH 286
C + + L H H+ RP C C++ F R+ L H+ +H
Sbjct: 39 DWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 32.9 bits (76), Expect = 0.023
Identities = 9/34 (26%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 285 QHTGERPYKCPFCPRTFASSGNCFSHRKRMHEGE 318
+ T C +T+ S + +H R H GE
Sbjct: 1 KRTATHTCDYAGCGKTYTKSSHLKAH-LRTHTGE 33
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 77
Score = 76.4 bits (189), Expect = 5e-18
Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Query: 250 TLRAHMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGE--RPYKCPFCPRTFASSGNC 307
+ + +HS E+P+ C C F ++ +K H+ Q E + CP C A +
Sbjct: 2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDL 61
Query: 308 FSHRKRMHEGE 318
H ++ H
Sbjct: 62 GVHLRKQHSYS 72
Score = 62.9 bits (154), Expect = 4e-13
Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 6/75 (8%)
Query: 223 NLTRHLECHDTVE--LSCPDCNRVYPTNSTLRAHMISHSTE--RPHNCPHCEKTFKRNQD 278
+ H + E C C+ + + T++ H++ TE +CPHC+ R D
Sbjct: 2 SSGSSGRTH-SGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSD 60
Query: 279 LKFHL-NQHTGERPY 292
L HL QH+ P
Sbjct: 61 LGVHLRKQHSYSGPS 75
Score = 30.6 bits (70), Expect = 0.12
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 5/32 (15%)
Query: 181 YQCPLCNKKINTKSNLRRHLQAHKPKGKHTCE 212
+ CP C+ I KS+L HL+ H+
Sbjct: 46 FHCPHCDTVIARKSDLGVHLRKQ-----HSYS 72
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 77.2 bits (191), Expect = 1e-17
Identities = 38/141 (26%), Positives = 61/141 (43%), Gaps = 30/141 (21%)
Query: 181 YQCPLCNKKINTKSNLRRHLQAH---KPKGKHTCEICFRIFKTEINLTRHLECHDTVELS 237
+CP C+KK +K L+ H + H KP C C + + + NL H
Sbjct: 8 VECPTCHKKFLSKYYLKVHNRKHTGEKP---FECPKCGKCYFRKENLLEHE--------- 55
Query: 238 CPDCNRVYPTNSTLRAHMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKCPFC 297
+ + + +E+ C C++TF+R +L+ H+ HTGE PYKC C
Sbjct: 56 --------------ARNCM-NRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSC 100
Query: 298 PRTFASSGNCFSHRKRMHEGE 318
+ F + SH ++H G
Sbjct: 101 SQQFMQKKDLQSHMIKLHSGP 121
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 76.8 bits (190), Expect = 1e-17
Identities = 39/142 (27%), Positives = 58/142 (40%), Gaps = 36/142 (25%)
Query: 181 YQC--PLCNKKINTKSNLRRHLQAH---KPKGKHTCEICFRIFKTEINLTRHLECHDTVE 235
+ C P CNK+ S+L+ H + H KP + C+
Sbjct: 7 FMCAYPGCNKRYFKLSHLQMHSRKHTGEKP---YQCD----------------------- 40
Query: 236 LSCPDCNRVYPTNSTLRAHMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKCP 295
DC R + + L+ H H+ +P C C++ F R+ LK H HTGE+P+ C
Sbjct: 41 --FKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCR 98
Query: 296 F--CPRTFASSGNCFSHRKRMH 315
+ C + FA S H MH
Sbjct: 99 WPSCQKKFARSDELVRH-HNMH 119
Score = 34.4 bits (80), Expect = 0.012
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 3/34 (8%)
Query: 287 TGERPYKC--PFCPRTFASSGNCFSHRKRMHEGE 318
+ +RP+ C P C + + + H R H GE
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMH-SRKHTGE 34
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A {Mus
musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A
1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A*
1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 73.7 bits (182), Expect = 7e-17
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 240 DCNRVYPTNSTLRAHMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKCPFCPR 299
C+R + + +L H+ H+ ++P C C + F R+ L H+ HTGE+P+ C C R
Sbjct: 11 SCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR 70
Query: 300 TFASSGNCFSHRKRMHEGE 318
FA S H ++H +
Sbjct: 71 KFARSDERKRH-TKIHLRQ 88
Score = 52.9 bits (128), Expect = 2e-09
Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 35/115 (30%)
Query: 181 YQCPL--CNKKINTKSNLRRHLQAH---KPKGKHTCEICFRIFKTEINLTRHLECHDTVE 235
Y CP+ C+++ + +L RH++ H KP C IC R F
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKP---FQCRICMRNFS---------------- 45
Query: 236 LSCPDCNRVYPTNSTLRAHMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGER 290
+ L H+ +H+ E+P C C + F R+ + K H H ++
Sbjct: 46 -----------RSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 30.1 bits (69), Expect = 0.25
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Query: 289 ERPYKCPF--CPRTFASSGNCFSHRKRMHEGE 318
ERPY CP C R F+ SG+ H R+H G+
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRH-IRIHTGQ 32
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 74.1 bits (183), Expect = 1e-16
Identities = 41/146 (28%), Positives = 58/146 (39%), Gaps = 39/146 (26%)
Query: 181 YQCPL--CNKKINTKSNLRRHLQAH--KPKGKHTCEICFRIFKTEINLTRHLECHDTVEL 236
CP C K S +R+HL H + H C
Sbjct: 6 IACPHKGCTKMFRDNSAMRKHLHTHGPRV---HVCA------------------------ 38
Query: 237 SCPDCNRVYPTNSTLRAHMISHSTERPHNCPH--CEKTFKRNQDLKFHLNQHTGERPYKC 294
+C + + +S L+ H + H+ E+P C C K F + +L+ H+ HTG+RPY C
Sbjct: 39 ---ECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVC 95
Query: 295 PF--CPRTFASSGNCFSHRKRMHEGE 318
PF C + FA S N SH H
Sbjct: 96 PFDGCNKKFAQSTNLKSH-ILTHAKA 120
Score = 26.7 bits (60), Expect = 5.1
Identities = 8/32 (25%), Positives = 10/32 (31%), Gaps = 4/32 (12%)
Query: 289 ERPYKCPF--CPRTFASSGNCFSHRKRMHEGE 318
R CP C + F + H H G
Sbjct: 3 PRTIACPHKGCTKMFRDNSAMRKH-LHTH-GP 32
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 73.3 bits (181), Expect = 1e-16
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 238 CPDCNRVYPTNSTLRAHMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGE--RPYKCP 295
C C +++ L H +SHS E+P++CP C FKR + +H+ H G +PY C
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 296 FCPRTFASSGNCFSHRKRMHEGE 318
C + F+ + H K++H G
Sbjct: 70 SCGKGFSRPDHLNGHIKQVHSGP 92
Score = 59.8 bits (146), Expect = 8e-12
Identities = 20/62 (32%), Positives = 24/62 (38%), Gaps = 1/62 (1%)
Query: 258 HSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKCPFCPRTFASSGNCFSHRKRMHEG 317
S C C K F+ L H H+GE+PY CP C F H R H+G
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYH-VRSHDG 60
Query: 318 ET 319
Sbjct: 61 SV 62
Score = 45.2 bits (108), Expect = 1e-06
Identities = 26/116 (22%), Positives = 37/116 (31%), Gaps = 36/116 (31%)
Query: 181 YQCPLCNKKINTKSNLRRHLQAH---KPKGKHTCEICFRIFKTEINLTRHLECHDTVELS 237
C +C K +L RH +H KP +
Sbjct: 8 VACEICGKIFRDVYHLNRHKLSHSGEKP------------YS------------------ 37
Query: 238 CPDCNRVYPTNSTLRAHMISHSTE--RPHNCPHCEKTFKRNQDLKFHLNQ-HTGER 290
CP C + + H+ SH +P+ C C K F R L H+ Q H+G
Sbjct: 38 CPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVHSGPS 93
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 75.3 bits (186), Expect = 2e-16
Identities = 39/161 (24%), Positives = 61/161 (37%), Gaps = 32/161 (19%)
Query: 180 RYQC--PLCNKKINTKSNLRRHLQAH---KPKGKHTCE--ICFRIFKTEINLTRHL---- 228
RY C C N L+ HL H KP C+ C + F + +LTRH
Sbjct: 12 RYICSFADCGAAYNKNWKLQAHLCKHTGEKP---FPCKEEGCEKGFTSLHHLTRHSLTHT 68
Query: 229 -----ECHDTVELSCPDCNRVYPTNSTLRAHMISHSTERPH----NCPHCEKTFKRNQDL 279
C C+ + T + ++ H + + +C K FK++ L
Sbjct: 69 GEKNFTCDS------DGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQL 122
Query: 280 KFHLNQHTGERPYKC--PFCPRTFASSGNCFSHRKRMHEGE 318
K H HT + PY+C C + F+ H +++H G
Sbjct: 123 KVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRH-EKVHAGY 162
Score = 71.9 bits (177), Expect = 4e-15
Identities = 37/151 (24%), Positives = 56/151 (37%), Gaps = 19/151 (12%)
Query: 181 YQC--PLCNKKINTKSNLRRHLQAH---KPKGKHTCE--ICFRIFKTEINLTRHLECHDT 233
+ C C K + +L RH H K TC+ C F T+ N+ +H
Sbjct: 43 FPCKEEGCEKGFTSLHHLTRHSLTHTGEKN---FTCDSDGCDLRFTTKANMKKHFNRF-H 98
Query: 234 VELSCP------DCNRVYPTNSTLRAHMISHSTERPHNCPH--CEKTFKRNQDLKFHLNQ 285
C +C + + ++ L+ H SH+ + P+ CPH C+K F LK H
Sbjct: 99 NIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKV 158
Query: 286 HTGERPYKCPFCPRTFASSGNCFSHRKRMHE 316
H G K C + H H+
Sbjct: 159 HAGYPCKKDDSCSFVGKTWTLYLKHVAECHQ 189
Score = 60.3 bits (147), Expect = 4e-11
Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 5/70 (7%)
Query: 253 AHMISHSTERPHNC--PHCEKTFKRNQDLKFHLNQHTGERPYKC--PFCPRTFASSGNCF 308
+ + C C + +N L+ HL +HTGE+P+ C C + F S +
Sbjct: 2 GEKALPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLT 61
Query: 309 SHRKRMHEGE 318
H H GE
Sbjct: 62 RH-SLTHTGE 70
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 72.3 bits (178), Expect = 2e-16
Identities = 21/81 (25%), Positives = 32/81 (39%), Gaps = 2/81 (2%)
Query: 237 SCPDCNRVYPTNSTLRAHMISHSTERPHNCPH--CEKTFKRNQDLKFHLNQHTGERPYKC 294
+C + + ++ L+ H SH+ + P+ CPH C+K F LK H H G K
Sbjct: 5 HFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKD 64
Query: 295 PFCPRTFASSGNCFSHRKRMH 315
C + H H
Sbjct: 65 DSCSFVGKTWTLYLKHVAECH 85
Score = 59.2 bits (144), Expect = 1e-11
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 265 NCPHCEKTFKRNQDLKFHLNQHTGERPYKCPF--CPRTFASSGNCFSHRKRMHEGE 318
+ +C K FK++ LK H HT + PY+CP C + F+ H +++H G
Sbjct: 5 HFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRH-EKVHAGY 59
Score = 32.2 bits (74), Expect = 0.039
Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Query: 181 YQC--PLCNKKINTKSNLRRHLQAHKPKGKHTCEICFRIFKTEINLTRH 227
Y+C C+K+ + S L+RH + H + C + KT +H
Sbjct: 32 YECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKH 80
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein,
DNA- binding, transcription, C2H2-type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 72.1 bits (178), Expect = 3e-16
Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Query: 238 CPDCNRVYPTNSTLRAHMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKCPFC 297
C C + + L+ HM H+ +P+ C C+ + L HL H+ ERP+KC C
Sbjct: 11 CEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQIC 70
Query: 298 PRTFASSGNCFSHRKRMHEGE 318
P +S H R H G+
Sbjct: 71 PYASRNSSQLTVH-LRSHTGD 90
Score = 65.1 bits (160), Expect = 9e-14
Identities = 28/96 (29%), Positives = 39/96 (40%), Gaps = 9/96 (9%)
Query: 207 GKHT------CEICFRIFKTEINLTRHLECHDTVE--LSCPDCNRVYPTNSTLRAHMISH 258
G CE+C + F + L H+ CH T C C+ +S+L H+ H
Sbjct: 1 GSSGSSGPHKCEVCGKCFSRKDKLKTHMRCH-TGVKPYKCKTCDYAAADSSSLNKHLRIH 59
Query: 259 STERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKC 294
S ERP C C + + L HL HTG+
Sbjct: 60 SDERPFKCQICPYASRNSSQLTVHLRSHTGDSGPSS 95
Score = 64.0 bits (157), Expect = 3e-13
Identities = 25/62 (40%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 257 SHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKCPFCPRTFASSGNCFSHRKRMHE 316
S + PH C C K F R LK H+ HTG +PYKC C A S + H R+H
Sbjct: 2 SSGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKH-LRIHS 60
Query: 317 GE 318
E
Sbjct: 61 DE 62
Score = 31.6 bits (73), Expect = 0.063
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
Query: 181 YQCPLCNKKINTKSNLRRHLQAH---KPKGKHTCEICFRIFKTEINLTRHLECH 231
Y+C C+ S+L +HL+ H +P C+IC + LT HL H
Sbjct: 37 YKCKTCDYAAADSSSLNKHLRIHSDERP---FKCQICPYASRNSSQLTVHLRSH 87
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 70.2 bits (173), Expect = 2e-15
Identities = 27/98 (27%), Positives = 41/98 (41%), Gaps = 4/98 (4%)
Query: 223 NLTRHLECHDTVE--LSCPDCNRVYPTNSTLRAHMISHSTERPHNCPHCEKTFKRNQDLK 280
+ + C C R + + L H +H+ ERP+ C C K F+R L+
Sbjct: 4 GSSGGRLPS-KTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLR 62
Query: 281 FHLNQHTGERPYKCPFCPRTFASSGNCFSHRKRMHEGE 318
H H+ E+P+KC C + F S H K +H
Sbjct: 63 DHRYIHSKEKPFKCQECGKGFCQSRTLAVH-KTLHMQT 99
Score = 67.5 bits (166), Expect = 2e-14
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
Query: 249 STLRAHMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKCPFCPRTFASSGNCF 308
S + T++ C C + F ++ +L H HT ERPY C C + F +
Sbjct: 3 SGSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLR 62
Query: 309 SHRKRMHEGE 318
H + +H E
Sbjct: 63 DH-RYIHSKE 71
Score = 66.3 bits (163), Expect = 5e-14
Identities = 28/107 (26%), Positives = 37/107 (34%), Gaps = 9/107 (8%)
Query: 193 KSNLRRHLQAH---KPKGKHTCEICFRIFKTEINLTRHLECHDTVE--LSCPDCNRVYPT 247
S K C+ C R F NL H H T E +C C++ +
Sbjct: 2 SSGSSGGRLPSKTKKE---FICKFCGRHFTKSYNLLIHERTH-TDERPYTCDICHKAFRR 57
Query: 248 NSTLRAHMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKC 294
LR H HS E+P C C K F +++ L H H
Sbjct: 58 QDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLHMQTSSPTA 104
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 67.1 bits (165), Expect = 8e-15
Identities = 20/58 (34%), Positives = 26/58 (44%)
Query: 262 RPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKCPFCPRTFASSGNCFSHRKRMHEGET 319
R C C + F R + LK H HT E+PY C C R F H +++H G
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGNL 58
Score = 44.8 bits (107), Expect = 6e-07
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 238 CPDCNRVYPTNSTLRAHMISHSTERPHNCPHCEKTFKRNQDLKFHLNQ-HTGE 289
C C R + L+ H SH+ E+P+ C C + F R L H + H+G
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGN 57
Score = 32.5 bits (75), Expect = 0.018
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
Query: 181 YQCPLCNKKINTKSNLRRHLQAH---KPKGKHTCEICFRIFKTEINLTRH 227
+ C +C + + +L+RH ++H KP + C +C R F L RH
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKP---YPCGLCNRAFTRRDLLIRH 49
Score = 27.5 bits (62), Expect = 1.1
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 181 YQCPLCNKKINTKSNLRRHLQ 201
Y C LCN+ + L RH Q
Sbjct: 31 YPCGLCNRAFTRRDLLIRHAQ 51
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 79
Score = 67.6 bits (166), Expect = 9e-15
Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 3/68 (4%)
Query: 237 SCPDCNRVYPTNSTLRAHM-ISHSTERPHNCPH--CEKTFKRNQDLKFHLNQHTGERPYK 293
P C R++ L H H ++ +CP C K+F + LK H+ H+ R Y
Sbjct: 11 DFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYI 70
Query: 294 CPFCPRTF 301
C F +
Sbjct: 71 CEFSGPSS 78
Score = 60.3 bits (147), Expect = 4e-12
Identities = 15/66 (22%), Positives = 24/66 (36%), Gaps = 6/66 (9%)
Query: 258 HSTERPHNCPH--CEKTFKRNQDLKFHL-NQHTGERPYKCPF--CPRTFASSGNCFSHRK 312
S C C + F Q L H QH ++ + CP C ++F + H
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEH-M 60
Query: 313 RMHEGE 318
++H
Sbjct: 61 KLHSDT 66
Score = 27.5 bits (62), Expect = 1.4
Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 8/39 (20%)
Query: 181 YQCP--LCNKKINTKSNLRRHLQAH---KPKGKHTCEIC 214
+ CP C K N K +L+ H++ H + + CE
Sbjct: 39 FSCPEPACGKSFNFKKHLKEHMKLHSDTRD---YICEFS 74
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 67.4 bits (166), Expect = 1e-14
Identities = 32/80 (40%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 238 CPDCNRVYPTNSTLRAHMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKCPFC 297
C C + + +STL H++ HS RP+ C +C K F + D+K H HTGE+P+KC C
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVC 63
Query: 298 PRTFASSGNCFSHRKRMHEG 317
+ F+ S N +H R H G
Sbjct: 64 GKAFSQSSNLITH-SRKHTG 82
Score = 44.7 bits (107), Expect = 1e-06
Identities = 26/111 (23%), Positives = 40/111 (36%), Gaps = 33/111 (29%)
Query: 181 YQCPLCNKKINTKSNLRRHLQAH---KPKGKHTCEICFRIFKTEINLTRHLECHDTVELS 237
+ C +C K S L HL H +P +
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRP------------YP------------------ 31
Query: 238 CPDCNRVYPTNSTLRAHMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTG 288
C C + + S ++ H H+ E+PH C C K F ++ +L H +HTG
Sbjct: 32 CQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKHTG 82
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 65.9 bits (162), Expect = 3e-14
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 249 STLRAHMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKCPFCPRTFASSGNCF 308
H +++P+ C C+ +F+ +L H HTGE+PY+C C F N
Sbjct: 3 HHHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLK 62
Query: 309 SHRKRMHEGE 318
+H R+H GE
Sbjct: 63 TH-TRIHSGE 71
Score = 52.5 bits (127), Expect = 2e-09
Identities = 19/55 (34%), Positives = 27/55 (49%)
Query: 238 CPDCNRVYPTNSTLRAHMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPY 292
C C + L +H H+ E+P+ C C F R +LK H H+GE+PY
Sbjct: 20 CDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKPY 74
Score = 31.3 bits (72), Expect = 0.067
Identities = 17/50 (34%), Positives = 19/50 (38%), Gaps = 6/50 (12%)
Query: 181 YQCPLCNKKINTKSNLRRHLQAH---KPKGKHTCEICFRIFKTEINLTRH 227
Y+C C K NL H H KP + C IC F NL H
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKP---YRCNICGAQFNRPANLKTH 64
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 65.9 bits (162), Expect = 4e-14
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Query: 248 NSTLRAHMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKCPFCPRTFASSGNC 307
+ + R + C C K+F + DL H HTGE+PYKC C + F +
Sbjct: 3 SGSSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHL 62
Query: 308 FSHRKRMHEGE 318
H R+H G
Sbjct: 63 IGH-HRVHTGS 72
Score = 51.7 bits (125), Expect = 4e-09
Identities = 19/73 (26%), Positives = 29/73 (39%), Gaps = 3/73 (4%)
Query: 223 NLTRHLECHDTVE--LSCPDCNRVYPTNSTLRAHMISHSTERPHNCPHCEKTFKRNQDLK 280
+ R C +C + + +S L H +H+ E+P+ C C K F + L
Sbjct: 5 SSGRSEWQQ-RERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLI 63
Query: 281 FHLNQHTGERPYK 293
H HTG P
Sbjct: 64 GHHRVHTGSGPSS 76
Score = 26.6 bits (60), Expect = 3.2
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 6/50 (12%)
Query: 181 YQCPLCNKKINTKSNLRRHLQAH---KPKGKHTCEICFRIFKTEINLTRH 227
Y+C C K + S+L +H + H KP + C+ C + F +L H
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKP---YKCDECGKAFIQRSHLIGH 65
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 66.0 bits (162), Expect = 4e-14
Identities = 17/83 (20%), Positives = 32/83 (38%), Gaps = 3/83 (3%)
Query: 238 CPDCNRVYPTNSTLRAHMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKCPFC 297
C C R + + L H+ +H+ E+P C C + F R+ + K H + P
Sbjct: 6 CRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQH-ILPILEDKV 64
Query: 298 PRTFASSGNCFSHRK--RMHEGE 318
+ + + + + GE
Sbjct: 65 EELLSKNYHLENEVARLKKLVGE 87
Score = 56.7 bits (138), Expect = 1e-10
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 262 RPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKCPFCPRTFASSGNCFSHRKRMH 315
+P C C + F R+ L H+ HTGE+P+ C C R FA S HR +
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHR-DIQ 54
Score = 54.4 bits (132), Expect = 6e-10
Identities = 21/116 (18%), Positives = 36/116 (31%), Gaps = 37/116 (31%)
Query: 181 YQCPLCNKKINTKSNLRRHLQAH---KPKGKHTCEICFRIFKTEINLTRHLECHDTVELS 237
+QC +C + + +L H++ H KP C+IC R F
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKP---FACDICGRKFA------------------ 42
Query: 238 CPDCNRVYPTNSTLRAHMISHSTERPHNCPHCEKTFKRNQDLKFHLNQ---HTGER 290
+ + H P E+ +N L+ + + GER
Sbjct: 43 ---------RSDERKRHRDIQ-HILPILEDKVEELLSKNYHLENEVARLKKLVGER 88
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 64.2 bits (157), Expect = 1e-13
Identities = 20/67 (29%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Query: 249 STLRAHMISHSTERPHNCPH--CEKTFKRNQDLKFHLNQHTGERPYKCPFCPRTFASSGN 306
+ L +++ RP+ CP C++ F R+ +L H+ HTG++P++C C R F+ S +
Sbjct: 7 NNLLNYVVPK--MRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDH 64
Query: 307 CFSHRKR 313
+H +
Sbjct: 65 LTTHIRT 71
Score = 43.4 bits (103), Expect = 3e-06
Identities = 14/49 (28%), Positives = 24/49 (48%)
Query: 239 PDCNRVYPTNSTLRAHMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHT 287
C+R + + L H+ H+ ++P C C + F R+ L H+ HT
Sbjct: 25 ESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 32.7 bits (75), Expect = 0.023
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 181 YQCPL--CNKKINTKSNLRRHLQAHKPKGKHTCEICFRIFKTEINLTRHLECH 231
Y CP+ C+++ + L RH++ H + C IC R F +LT H+ H
Sbjct: 20 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 28.4 bits (64), Expect = 0.58
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 9/74 (12%)
Query: 191 NTKSNLRRHLQAH-KPKGKHTC--EICFRIFKTEINLTRHLECHDTVE--LSCPDCNRVY 245
+ +NL ++ +P + C E C R F LTRH+ H T + C C R +
Sbjct: 4 HPMNNLLNYVVPKMRP---YACPVESCDRRFSRSDELTRHIRIH-TGQKPFQCRICMRNF 59
Query: 246 PTNSTLRAHMISHS 259
+ L H+ +H+
Sbjct: 60 SRSDHLTTHIRTHT 73
Score = 25.7 bits (57), Expect = 6.8
Identities = 6/24 (25%), Positives = 13/24 (54%)
Query: 180 RYQCPLCNKKINTKSNLRRHLQAH 203
+QC +C + + +L H++ H
Sbjct: 49 PFQCRICMRNFSRSDHLTTHIRTH 72
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 64.8 bits (159), Expect = 2e-13
Identities = 23/71 (32%), Positives = 30/71 (42%), Gaps = 3/71 (4%)
Query: 248 NSTLRAHMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKCPFCPRTFASSGNC 307
S HM H RP+ C C K FK L H+ HTG +PY+C C + F +
Sbjct: 22 KSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSF 81
Query: 308 FSHRKRMHEGE 318
HR +
Sbjct: 82 --HR-HVTSCT 89
Score = 61.7 bits (151), Expect = 2e-12
Identities = 19/98 (19%), Positives = 34/98 (34%), Gaps = 6/98 (6%)
Query: 211 CEICFRIFKTEINLTRHLECHDTVE--LSCPDCNRVYPTNSTLRAHMISHSTERPHNCPH 268
C+ C + F + RH+ H C C + + L HM H+ +P+ C
Sbjct: 13 CQ-CGKSFTHKSQRDRHMSMH-LGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNI 70
Query: 269 CEKTFKRNQDLKFHLNQHTGERPYKCPFCPRTFASSGN 306
C K F H + + + Y+ + +
Sbjct: 71 CAKRFMWRDSF--HRHVTSCTKSYEAAKAEQNTTEASG 106
Score = 55.5 bits (135), Expect = 5e-10
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Query: 257 SHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKCPFCPRTFASSGNCFSHRKRMHE 316
S ++ + C C K+F H++ H G RPY C C + F + H ++H
Sbjct: 4 GSSGDKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGH-MKIHT 61
Query: 317 GE 318
G
Sbjct: 62 GI 63
Score = 43.6 bits (104), Expect = 5e-06
Identities = 23/104 (22%), Positives = 39/104 (37%), Gaps = 12/104 (11%)
Query: 181 YQCPLCNKKINTKSNLRRHLQAH---KPKGKHTCEICFRIFKTEINLTRHLECHDTVE-- 235
Y C C K KS RH+ H +P + C +C + FK + +L H++ H T
Sbjct: 11 YPCQ-CGKSFTHKSQRDRHMSMHLGLRP---YGCGVCGKKFKMKHHLVGHMKIH-TGIKP 65
Query: 236 LSCPDCNRVYPTNSTLRAHMISHSTERPHNCPHCEKTFKRNQDL 279
C C + + + H+ S + + E+
Sbjct: 66 YECNICAKRFMWRDSFHRHV--TSCTKSYEAAKAEQNTTEASGP 107
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible
early growth response protein 1, TGFB-inducible early
growth response protein 1; NMR {Homo sapiens}
Length = 72
Score = 63.2 bits (154), Expect = 3e-13
Identities = 28/71 (39%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Query: 249 STLRAHMISHSTERPHNCPH--CEKTFKRNQDLKFHLNQHTGERPYKC--PFCPRTFASS 304
S I S R H C H C KT+ ++ LK H HTGE+P+ C C R FA S
Sbjct: 3 SGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARS 62
Query: 305 GNCFSHRKRMH 315
HR R H
Sbjct: 63 DELSRHR-RTH 72
Score = 49.3 bits (118), Expect = 3e-08
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 239 PDCNRVYPTNSTLRAHMISHSTERPHNC--PHCEKTFKRNQDLKFHLNQH 286
P C + Y +S L+AH +H+ E+P +C CE+ F R+ +L H H
Sbjct: 23 PGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 29.7 bits (67), Expect = 0.21
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 10/58 (17%)
Query: 181 YQC--PLCNKKINTKSNLRRHLQAH---KPKGKHTC--EICFRIFKTEINLTRHLECH 231
+ C P C K S+L+ H + H KP +C + C R F L+RH H
Sbjct: 18 HICSHPGCGKTYFKSSHLKAHTRTHTGEKP---FSCSWKGCERRFARSDELSRHRRTH 72
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 86
Score = 62.9 bits (154), Expect = 5e-13
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 5/73 (6%)
Query: 250 TLRAHMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGE----RPYKCPFCPRTFASSG 305
+ + +H+ E+P+ C HC+KTF++ Q L H ++ + C C +TF
Sbjct: 2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRN 61
Query: 306 NCFSHRKRMHEGE 318
H G
Sbjct: 62 TMARH-ADNCAGP 73
Score = 57.5 bits (140), Expect = 4e-11
Identities = 12/68 (17%), Positives = 20/68 (29%), Gaps = 4/68 (5%)
Query: 238 CPDCNRVYPTNSTLRAHMISHSTE----RPHNCPHCEKTFKRNQDLKFHLNQHTGERPYK 293
C C++ + L H + C C KTF R + H + G +
Sbjct: 18 CSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDGVE 77
Query: 294 CPFCPRTF 301
+
Sbjct: 78 GENSGPSS 85
Score = 39.8 bits (94), Expect = 9e-05
Identities = 11/44 (25%), Positives = 15/44 (34%), Gaps = 1/44 (2%)
Query: 279 LKFHLNQHTGERPYKCPFCPRTFASSGNCFSHRKRMHEGETLPD 322
HTGE+PY C C +TF H + +
Sbjct: 3 SGSSGRTHTGEKPYACSHCDKTFRQKQLLDMH-FKRYHDPNFVP 45
Score = 37.9 bits (89), Expect = 4e-04
Identities = 12/93 (12%), Positives = 24/93 (25%), Gaps = 23/93 (24%)
Query: 181 YQCPLCNKKINTKSNLRRHLQAHKPKGKHTCEICFRIFKTEINLTRHLECHDTVELSCPD 240
Y C C+K K L H + + + F C
Sbjct: 16 YACSHCDKTFRQKQLLDMHFKRY--HDPNFVPAAFV---------------------CSK 52
Query: 241 CNRVYPTNSTLRAHMISHSTERPHNCPHCEKTF 273
C + + +T+ H + + + +
Sbjct: 53 CGKTFTRRNTMARHADNCAGPDGVEGENSGPSS 85
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double
helix, transcription/DNA complex; HET: DNA; 2.80A
{Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 62.2 bits (152), Expect = 5e-13
Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 2/61 (3%)
Query: 258 HSTERPHNCPHCEKTFKRNQDLKFHL--NQHTGERPYKCPFCPRTFASSGNCFSHRKRMH 315
E + C C + + + H + + Y CPFC + F N +H K +H
Sbjct: 5 KEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIH 64
Query: 316 E 316
+
Sbjct: 65 K 65
Score = 49.1 bits (118), Expect = 2e-08
Identities = 14/53 (26%), Positives = 20/53 (37%), Gaps = 2/53 (3%)
Query: 238 CPDCNRVYPTNSTLRAHM--ISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTG 288
C C+RVY S H + + CP C K F R ++ H+
Sbjct: 13 CKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK 65
Score = 40.6 bits (96), Expect = 2e-05
Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 181 YQCPLCNKKINTKSNLRRHLQAHKPKGK--HTCEICFRIFKTEINLTRHLECH 231
Y+C +C++ SN RH + + C CF+ F + N+T H++
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKII 63
Score = 26.0 bits (58), Expect = 4.6
Identities = 7/30 (23%), Positives = 11/30 (36%)
Query: 73 GPKPYQCAICPRGYYSDIGLQNHLWSHRKI 102
K Y C C + + + H+ KI
Sbjct: 37 NVKVYPCPFCFKEFTRKDNMTAHVKIIHKI 66
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 61.7 bits (150), Expect = 1e-12
Identities = 15/67 (22%), Positives = 24/67 (35%), Gaps = 3/67 (4%)
Query: 258 HSTERPHNCPHCEKTFKRNQDLKFHLNQHT---GERPYKCPFCPRTFASSGNCFSHRKRM 314
S C C T ++ L +H +H + C FC + F + +HR +
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61
Query: 315 HEGETLP 321
H L
Sbjct: 62 HPALLLA 68
Score = 51.6 bits (124), Expect = 5e-09
Identities = 11/66 (16%), Positives = 19/66 (28%), Gaps = 3/66 (4%)
Query: 236 LSCPDCNRVYPTNSTLRAHMISHST---ERPHNCPHCEKTFKRNQDLKFHLNQHTGERPY 292
L C C ++L H H+ C C K F++ + H ++
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLL 67
Query: 293 KCPFCP 298
Sbjct: 68 APQESS 73
Score = 44.7 bits (106), Expect = 1e-06
Identities = 14/62 (22%), Positives = 22/62 (35%), Gaps = 3/62 (4%)
Query: 181 YQCPLCNKKINTKSNLRRHLQAHKPKGKH---TCEICFRIFKTEINLTRHLECHDTVELS 237
QC +C K++L H + H CE C + F+ ++ H L
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLL 67
Query: 238 CP 239
P
Sbjct: 68 AP 69
Score = 33.1 bits (76), Expect = 0.017
Identities = 5/32 (15%), Positives = 10/32 (31%)
Query: 181 YQCPLCNKKINTKSNLRRHLQAHKPKGKHTCE 212
+ C C K+ ++ H P +
Sbjct: 39 FPCEFCGKRFEKPDSVAAHRSKSHPALLLAPQ 70
Score = 26.2 bits (58), Expect = 4.4
Identities = 8/27 (29%), Positives = 8/27 (29%)
Query: 73 GPKPYQCAICPRGYYSDIGLQNHLWSH 99
G QC IC L H H
Sbjct: 4 GSSGLQCEICGFTCRQKASLNWHQRKH 30
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 60.3 bits (147), Expect = 2e-12
Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 257 SHSTERPHNCPHCEKTFKRNQDLKFHLNQ-HTGERPYKCPFCPRTFAS 303
S S +P+ C C K F R L H+ Q HT ERP+KC +S
Sbjct: 6 SGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS 53
Score = 41.8 bits (99), Expect = 8e-06
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 286 HTGERPYKCPFCPRTFASSGNCFSHRKRMHEGE 318
+ +PY C C + F+ + H K++H E
Sbjct: 7 GSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSE 39
Score = 27.2 bits (61), Expect = 1.2
Identities = 10/44 (22%), Positives = 18/44 (40%), Gaps = 7/44 (15%)
Query: 181 YQCPLCNKKINTKSNLRRHLQA-H---KPKGKHTCEICFRIFKT 220
Y C C K + +L H++ H +P H C++ +
Sbjct: 13 YICQSCGKGFSRPDHLNGHIKQVHTSERP---HKCQVWVSGPSS 53
Score = 26.0 bits (58), Expect = 3.0
Identities = 14/71 (19%), Positives = 23/71 (32%), Gaps = 29/71 (40%)
Query: 203 HKPKGKHTCEICFRIFKTEINLTRHLECHDTVELSCPDCNRVYPTNSTLRAHMISHSTER 262
KP + C+ C + F +L H++ +V H++ER
Sbjct: 10 GKP---YICQSCGKGFSRPDHLNGHIK-------------QV-------------HTSER 40
Query: 263 PHNCPHCEKTF 273
PH C
Sbjct: 41 PHKCQVWVSGP 51
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 72
Score = 60.6 bits (148), Expect = 2e-12
Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 251 LRAHMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKCPFCPRTFASSGNCFSH 310
HS E+P+ C C K F R+ L H HTGE+PYKC C + F+ + +H
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH 61
Query: 311 RKRMHEGE 318
+R+H
Sbjct: 62 -QRIHTSG 68
Score = 50.5 bits (122), Expect = 8e-09
Identities = 17/55 (30%), Positives = 25/55 (45%)
Query: 238 CPDCNRVYPTNSTLRAHMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPY 292
C +C + + +S L H H+ E+P+ C C K F +N L H HT
Sbjct: 17 CVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSGPSS 71
Score = 29.4 bits (67), Expect = 0.33
Identities = 16/54 (29%), Positives = 21/54 (38%), Gaps = 6/54 (11%)
Query: 181 YQCPLCNKKINTKSNLRRHLQAH---KPKGKHTCEICFRIFKTEINLTRHLECH 231
Y C C K + S L +H + H KP + C C + F L H H
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKP---YKCLECGKAFSQNSGLINHQRIH 65
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 60.2 bits (147), Expect = 3e-12
Identities = 16/62 (25%), Positives = 24/62 (38%), Gaps = 1/62 (1%)
Query: 257 SHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKCPFCPRTFASSGNCFSHRKRMHE 316
S S+ P C C + L+ H H +RP+KC +C N H +
Sbjct: 3 SGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKH-MKKFH 61
Query: 317 GE 318
G+
Sbjct: 62 GD 63
Score = 52.5 bits (127), Expect = 2e-09
Identities = 15/58 (25%), Positives = 26/58 (44%)
Query: 238 CPDCNRVYPTNSTLRAHMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKCP 295
C +C+ + + LR H H T+RP C +C K+ +L H+ + G+
Sbjct: 12 CSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMSGPSS 69
Score = 36.7 bits (86), Expect = 7e-04
Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 7/64 (10%)
Query: 181 YQCPLCNKKINTKSNLRRHLQAH---KPKGKHTCEICFRIFKTEINLTRHLECHDTVELS 237
+C C+ ++K+ LR H + H +P C C K NL++H++ ++S
Sbjct: 10 EKCSECSYSCSSKAALRIHERIHCTDRP---FKCNYCSFDTKQPSNLSKHMKKF-HGDMS 65
Query: 238 CPDC 241
P
Sbjct: 66 GPSS 69
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 59.9 bits (144), Expect = 2e-11
Identities = 25/127 (19%), Positives = 42/127 (33%), Gaps = 5/127 (3%)
Query: 191 NTKSNLRRHLQAHKPKGKHTCEICFRIFKTEINLTRHLECHDTVELSCPDCNRVYPTNST 250
+ S +++L HK H + K LT + + N S+
Sbjct: 5 DVDSGSKKYLSNHKGIFIH---VTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESS 61
Query: 251 LRAHMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKCPFCPRTFASSGNCFSH 310
+++ CP C F + LK H+ E CP C + F S+ + H
Sbjct: 62 YLYRLLASKAISQFVCPLCLMPFSSSVSLKQHIRYT--EHTKVCPVCKKEFTSTDSALDH 119
Query: 311 RKRMHEG 317
+ H
Sbjct: 120 VCKKHNI 126
Score = 42.6 bits (99), Expect = 2e-05
Identities = 17/99 (17%), Positives = 37/99 (37%), Gaps = 5/99 (5%)
Query: 161 KITASNLLSYNNAMFSSGTRYQC----PLCNKKINTKSNLRRHLQAHKPKGKHTCEICFR 216
+T L Y+ + + N ++ +S+ L A K + C +C
Sbjct: 23 HVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLLASKAISQFVCPLCLM 82
Query: 217 IFKTEINLTRHLECHDTVELSCPDCNRVYPTNSTLRAHM 255
F + ++L +H+ CP C + + + + H+
Sbjct: 83 PFSSSVSLKQHIRYT-EHTKVCPVCKKEFTSTDSALDHV 120
Score = 38.0 bits (87), Expect = 9e-04
Identities = 11/61 (18%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 177 SGTRYQCPLCNKKINTKSNLRRHLQAHKPKGKHTCEICFRIFKTEINLTRHLECHDTVEL 236
+ +++ CPLC ++ +L++H++ + C +C + F + + H+ + +
Sbjct: 71 AISQFVCPLCLMPFSSSVSLKQHIRYTE--HTKVCPVCKKEFTSTDSALDHVCKKHNICV 128
Query: 237 S 237
S
Sbjct: 129 S 129
Score = 29.1 bits (64), Expect = 1.0
Identities = 11/64 (17%), Positives = 22/64 (34%)
Query: 38 SPAKSKAGSIVVKSLEHLKDLKVTKKKTVYDRRKNGPKPYQCAICPRGYYSDIGLQNHLW 97
+P + + +VK+L H L + C +C + S + L+ H+
Sbjct: 36 TPEQKRLIRAIVKTLIHNPQLLDESSYLYRLLASKAISQFVCPLCLMPFSSSVSLKQHIR 95
Query: 98 SHRK 101
Sbjct: 96 YTEH 99
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 53.5 bits (129), Expect = 4e-10
Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 253 AHMISHSTERPHNC--PHCEKTFKRNQDLKFHLNQHTGERPYKC 294
+ S + E+P C P C F R+ +L H H+G +P
Sbjct: 2 SSGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGP 45
Score = 40.7 bits (96), Expect = 1e-05
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Query: 282 HLNQHTGERPYKC--PFCPRTFASSGNCFSHRKRMHEGE 318
+ TGE+P+ C P C F+ S HR R H G
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHR-RSHSGV 40
Score = 25.3 bits (56), Expect = 5.4
Identities = 8/28 (28%), Positives = 11/28 (39%)
Query: 239 PDCNRVYPTNSTLRAHMISHSTERPHNC 266
P C + + L H SHS +P
Sbjct: 18 PGCGWRFSRSDELSRHRRSHSGVKPSGP 45
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 51.0 bits (123), Expect = 3e-09
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 253 AHMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKC 294
+ S + P+ C CEK+F L H HT E+P
Sbjct: 2 SSGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGP 43
Score = 39.1 bits (92), Expect = 5e-05
Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 282 HLNQHTGERPYKCPFCPRTFASSGNCFSHRKRMHEGE 318
+ G PYKC C ++F+ H+ RMH E
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQ-RMHTRE 38
Score = 24.8 bits (55), Expect = 7.6
Identities = 7/29 (24%), Positives = 11/29 (37%)
Query: 238 CPDCNRVYPTNSTLRAHMISHSTERPHNC 266
C C + + L H H+ E+P
Sbjct: 15 CSQCEKSFSGKLRLLVHQRMHTREKPSGP 43
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 51.0 bits (123), Expect = 3e-09
Identities = 15/40 (37%), Positives = 18/40 (45%)
Query: 253 AHMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPY 292
S E+P+ C C F+ Q LK HL HTG P
Sbjct: 1 GSSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPS 40
Score = 39.8 bits (94), Expect = 3e-05
Identities = 12/37 (32%), Positives = 14/37 (37%), Gaps = 1/37 (2%)
Query: 282 HLNQHTGERPYKCPFCPRTFASSGNCFSHRKRMHEGE 318
GE+PY C C F SH R+H G
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSH-LRIHTGS 37
Score = 25.5 bits (57), Expect = 3.3
Identities = 7/28 (25%), Positives = 12/28 (42%)
Query: 237 SCPDCNRVYPTNSTLRAHMISHSTERPH 264
C C + TL++H+ H+ P
Sbjct: 13 PCEICGTRFRHLQTLKSHLRIHTGSGPS 40
Score = 25.5 bits (57), Expect = 3.4
Identities = 8/28 (28%), Positives = 12/28 (42%), Gaps = 3/28 (10%)
Query: 181 YQCPLCNKKINTKSNLRRHLQAH---KP 205
Y C +C + L+ HL+ H P
Sbjct: 12 YPCEICGTRFRHLQTLKSHLRIHTGSGP 39
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 50.6 bits (122), Expect = 4e-09
Identities = 15/41 (36%), Positives = 19/41 (46%)
Query: 254 HMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKC 294
S S ERP+ C C K F R+ L HL +H E+
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGP 43
Score = 38.7 bits (91), Expect = 9e-05
Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 282 HLNQHTGERPYKCPFCPRTFASSGNCFSHRKRMHEGE 318
+ +GERPY C C + F + H + H E
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEH-LKRHFRE 38
Score = 26.3 bits (59), Expect = 1.7
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 238 CPDCNRVYPTNSTLRAHMISHSTERPHNC 266
C +C + + +S L H+ H E+
Sbjct: 15 CNECGKNFGRHSHLIEHLKRHFREKSSGP 43
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 52.5 bits (125), Expect = 5e-09
Identities = 18/108 (16%), Positives = 36/108 (33%), Gaps = 8/108 (7%)
Query: 194 SNLRRHLQAHKPKGKHTCEICFRIFKTEINLTRHLECHDTVELSCPDCNRVYPTNST--- 250
S+ + + K C+ C + T + LT H+ + + P +
Sbjct: 5 SSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPR 64
Query: 251 ---LRAHMISHSTERPHNCPHCEKTFKRNQDLKFHL--NQHTGERPYK 293
L ++ C +C +F+ QDL H+ +H +
Sbjct: 65 KRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQKVSGP 112
Score = 45.5 bits (107), Expect = 1e-06
Identities = 19/91 (20%), Positives = 29/91 (31%), Gaps = 6/91 (6%)
Query: 236 LSCPDCNRVYPTNSTLRAHMIS-----HSTERPHNCPHCEKTFKRNQDLKFHLNQHTGER 290
C DC+ Y T L HM N + R + L + ++
Sbjct: 20 FRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQK 79
Query: 291 PYKCPFCPRTFASSGNCFSH-RKRMHEGETL 320
KC +C +F S + H K H +
Sbjct: 80 VLKCMYCGHSFESLQDLSVHMIKTKHYQKVS 110
Score = 42.1 bits (98), Expect = 3e-05
Identities = 10/78 (12%), Positives = 21/78 (26%), Gaps = 2/78 (2%)
Query: 247 TNSTLRAHMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKCPFCPRTFASSGN 306
+ S+ + + + C C + +L H+ TG
Sbjct: 3 SGSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHM-NETGHYRDDNHETDNNN-PKRW 60
Query: 307 CFSHRKRMHEGETLPDIS 324
++ + E E D
Sbjct: 61 SKPRKRSLLEMEGKEDAQ 78
Score = 32.0 bits (72), Expect = 0.089
Identities = 7/48 (14%), Positives = 14/48 (29%)
Query: 181 YQCPLCNKKINTKSNLRRHLQAHKPKGKHTCEICFRIFKTEINLTRHL 228
K +L + C C F++ +L+ H+
Sbjct: 53 DNNNPKRWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHM 100
Score = 26.3 bits (57), Expect = 8.2
Identities = 18/145 (12%), Positives = 33/145 (22%), Gaps = 43/145 (29%)
Query: 65 TVYDRRKNGPKPYQCAICPRGYYSDIGLQNHLWSHRKILKNSNVGIYYTFTEDLREREDG 124
+Y G ++C C Y + + L H+ E G
Sbjct: 8 KLYGSIFTGASKFRCKDCSAAYDTLVELTVHM------------------------NETG 43
Query: 125 EKRKHWIDENGGGENEMETPTPKKIGIREKVNWKKTKITASNLLSYNNAMFSSGTRYQCP 184
R + + P + + E + +C
Sbjct: 44 HYRDDNHETDNNNPKRWSKPRKRSLLEMEGKE-------------------DAQKVLKCM 84
Query: 185 LCNKKINTKSNLRRHLQAHKPKGKH 209
C + +L H+ K K
Sbjct: 85 YCGHSFESLQDLSVHMIKTKHYQKV 109
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 50.2 bits (121), Expect = 7e-09
Identities = 12/42 (28%), Positives = 18/42 (42%)
Query: 253 AHMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKC 294
+ S E+ C C+ F + L+ H N H GE+P
Sbjct: 2 SSGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGP 43
Score = 39.4 bits (93), Expect = 4e-05
Identities = 10/37 (27%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 282 HLNQHTGERPYKCPFCPRTFASSGNCFSHRKRMHEGE 318
+ GE+ +KC C F+ + + H + +H GE
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLH-QNVHVGE 38
Score = 26.4 bits (59), Expect = 2.2
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 238 CPDCNRVYPTNSTLRAHMISHSTERPHNC 266
C +C+ + S+LR H H E+P
Sbjct: 15 CRECDMCFSQASSLRLHQNVHVGEKPSGP 43
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 49.8 bits (120), Expect = 8e-09
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 253 AHMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKC 294
+ S S E+P+ C C K + R +L H H GE+
Sbjct: 2 SSGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGP 43
Score = 39.0 bits (92), Expect = 6e-05
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 282 HLNQHTGERPYKCPFCPRTFASSGNCFSHRKRMHEGE 318
+ + E+PYKC C + + N H +R+H GE
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMH-QRVHMGE 38
Score = 25.1 bits (56), Expect = 5.5
Identities = 8/29 (27%), Positives = 10/29 (34%)
Query: 238 CPDCNRVYPTNSTLRAHMISHSTERPHNC 266
C DC + Y L H H E+
Sbjct: 15 CEDCGKGYNRRLNLDMHQRVHMGEKTSGP 43
Score = 24.4 bits (54), Expect = 8.9
Identities = 10/28 (35%), Positives = 13/28 (46%), Gaps = 3/28 (10%)
Query: 181 YQCPLCNKKINTKSNLRRHLQAH---KP 205
Y+C C K N + NL H + H K
Sbjct: 13 YKCEDCGKGYNRRLNLDMHQRVHMGEKT 40
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.5 bits (119), Expect = 1e-08
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 253 AHMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKC 294
+ S S E+P+ C C K +KR DL FH HTGE+
Sbjct: 2 SSGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGP 43
Score = 37.5 bits (88), Expect = 2e-04
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 282 HLNQHTGERPYKCPFCPRTFASSGNCFSHRKRMHEGE 318
+ +GE+PYKC C + + + H+ R+H GE
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQ-RVHTGE 38
Score = 24.8 bits (55), Expect = 6.3
Identities = 7/29 (24%), Positives = 11/29 (37%)
Query: 238 CPDCNRVYPTNSTLRAHMISHSTERPHNC 266
C +C + Y L H H+ E+
Sbjct: 15 CVECGKGYKRRLDLDFHQRVHTGEKLSGP 43
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid
binding, KIAA1227 protein, structural genomics; NMR
{Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 51.1 bits (121), Expect = 1e-08
Identities = 18/98 (18%), Positives = 31/98 (31%), Gaps = 3/98 (3%)
Query: 223 NLTRHLECHDTVELSCPDCNRVYPTNSTLRAHMISHSTERPHNCPHCEKTFKRNQDLKFH 282
+ + C CN + +H CP+C F + + H
Sbjct: 4 GSSGASPVENKEVYQCRLCNAKLSSLLEQGSHERLCRNAAV--CPYCSLRFFSPELKQEH 61
Query: 283 LNQHTGERPYKCPFCPRTFASSGNCFSHRKRMHEGETL 320
+ C C RTF SS + + H+ +H +
Sbjct: 62 -ESKCEYKKLTCLECMRTFKSSFSIWRHQVEVHNQNNM 98
Score = 47.6 bits (112), Expect = 3e-07
Identities = 17/79 (21%), Positives = 33/79 (41%), Gaps = 2/79 (2%)
Query: 179 TRYQCPLCNKKINTKSNLRRHLQAHKPKGKHTCEICFRIFKTEINLTRHLECHDTVELSC 238
YQC LCN K+++ H + + C C F + H + +L+C
Sbjct: 15 EVYQCRLCNAKLSSLLEQGSHERLCR--NAAVCPYCSLRFFSPELKQEHESKCEYKKLTC 72
Query: 239 PDCNRVYPTNSTLRAHMIS 257
+C R + ++ ++ H +
Sbjct: 73 LECMRTFKSSFSIWRHQVE 91
Score = 43.4 bits (101), Expect = 7e-06
Identities = 15/79 (18%), Positives = 28/79 (35%), Gaps = 2/79 (2%)
Query: 204 KPKGKHTCEICFRIFKTEINLTRHLECHDTVELSCPDCNRVYPTNSTLRAHMISHSTERP 263
+ K + C +C + + H CP C+ + + + H S +
Sbjct: 12 ENKEVYQCRLCNAKLSSLLEQGSHERLCRN-AAVCPYCSLRFFSPELKQEHE-SKCEYKK 69
Query: 264 HNCPHCEKTFKRNQDLKFH 282
C C +TFK + + H
Sbjct: 70 LTCLECMRTFKSSFSIWRH 88
Score = 36.4 bits (83), Expect = 0.002
Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Query: 165 SNLLSYNNAMFSSGTRYQCPLCNKKINTKSNLRRHLQAHKPKGKHTCEICFRIFKTEINL 224
S+LL + CP C+ + + + H ++ K TC C R FK+ ++
Sbjct: 27 SSLLEQGSHERLCRNAAVCPYCSLRFFSPELKQEH-ESKCEYKKLTCLECMRTFKSSFSI 85
Query: 225 TRH 227
RH
Sbjct: 86 WRH 88
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.1 bits (118), Expect = 2e-08
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 253 AHMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKC 294
+ S + E+P+ C C K+F + L H HTGE P
Sbjct: 2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 37.1 bits (87), Expect = 3e-04
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 282 HLNQHTGERPYKCPFCPRTFASSGNCFSHRKRMHEGE 318
+ TGE+PY+C C ++F H+ R+H GE
Sbjct: 3 SGSSGTGEKPYECSDCGKSFIKKSQLHVHQ-RIHTGE 38
Score = 25.6 bits (57), Expect = 3.3
Identities = 9/31 (29%), Positives = 12/31 (38%)
Query: 238 CPDCNRVYPTNSTLRAHMISHSTERPHNCPH 268
C DC + + S L H H+ E P
Sbjct: 15 CSDCGKSFIKKSQLHVHQRIHTGENPSGPSS 45
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 48.7 bits (117), Expect = 2e-08
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 253 AHMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKC 294
+ S + +P+ C C KTF L H HTG +P
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43
Score = 37.9 bits (89), Expect = 2e-04
Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 282 HLNQHTGERPYKCPFCPRTFASSGNCFSHRKRMHEGE 318
+ TG +PY C C +TF+ H+ R H G
Sbjct: 3 SGSSGTGVKPYGCSQCAKTFSLKSQLIVHQ-RSHTGV 38
Score = 24.8 bits (55), Expect = 8.0
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 238 CPDCNRVYPTNSTLRAHMISHSTERPHNC 266
C C + + S L H SH+ +P
Sbjct: 15 CSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.7 bits (117), Expect = 2e-08
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 253 AHMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKC 294
+ S + E+P+ C C K+F L+ H HTGER
Sbjct: 2 SSGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGP 43
Score = 37.9 bits (89), Expect = 2e-04
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 282 HLNQHTGERPYKCPFCPRTFASSGNCFSHRKRMHEGE 318
+ TGE+PYKC C ++F H ++ H GE
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIH-QKCHTGE 38
Score = 26.7 bits (60), Expect = 1.2
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 238 CPDCNRVYPTNSTLRAHMISHSTERPHNC 266
C DC + + S LR H H+ ER
Sbjct: 15 CSDCGKSFTWKSRLRIHQKCHTGERHSGP 43
Score = 24.8 bits (55), Expect = 6.1
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 181 YQCPLCNKKINTKSNLRRHLQAH 203
Y+C C K KS LR H + H
Sbjct: 13 YKCSDCGKSFTWKSRLRIHQKCH 35
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 48.7 bits (117), Expect = 2e-08
Identities = 15/41 (36%), Positives = 17/41 (41%)
Query: 254 HMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKC 294
S S ERP C C K F R L HL H+ E+
Sbjct: 3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGP 43
Score = 38.3 bits (90), Expect = 1e-04
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 282 HLNQHTGERPYKCPFCPRTFASSGNCFSHRKRMHEGE 318
+ +GERP+KC C + F + H R+H E
Sbjct: 3 SGSSGSGERPFKCNECGKGFGRRSHLAGHL-RLHSRE 38
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.7 bits (117), Expect = 2e-08
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 253 AHMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKC 294
+ S S ++P+ C C KTF + L H HTGER
Sbjct: 2 SSGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGP 43
Score = 39.1 bits (92), Expect = 6e-05
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 282 HLNQHTGERPYKCPFCPRTFASSGNCFSHRKRMHEGE 318
+ +G++PY+C C +TF G+ H KR+H GE
Sbjct: 3 SGSSGSGKKPYECKECRKTFIQIGHLNQH-KRVHTGE 38
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.3 bits (116), Expect = 3e-08
Identities = 15/41 (36%), Positives = 18/41 (43%)
Query: 254 HMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKC 294
S + ER + C C K F R L H HTGE+P
Sbjct: 3 SGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGP 43
Score = 37.5 bits (88), Expect = 2e-04
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 282 HLNQHTGERPYKCPFCPRTFASSGNCFSHRKRMHEGE 318
+ TGER Y+C C + FA H+ R+H GE
Sbjct: 3 SGSSGTGERHYECSECGKAFARKSTLIMHQ-RIHTGE 38
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.3 bits (116), Expect = 3e-08
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 254 HMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKC 294
S + E+P+ C C K+F + L H HTGE+P
Sbjct: 3 SGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGP 43
Score = 36.7 bits (86), Expect = 3e-04
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 282 HLNQHTGERPYKCPFCPRTFASSGNCFSHRKRMHEGE 318
+ TGE+PY+C C ++F H +++H GE
Sbjct: 3 SGSSGTGEKPYECSICGKSFTKKSQLHVH-QQIHTGE 38
Score = 25.6 bits (57), Expect = 3.7
Identities = 8/31 (25%), Positives = 12/31 (38%)
Query: 238 CPDCNRVYPTNSTLRAHMISHSTERPHNCPH 268
C C + + S L H H+ E+P
Sbjct: 15 CSICGKSFTKKSQLHVHQQIHTGEKPSGPSS 45
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 49.6 bits (118), Expect = 3e-08
Identities = 17/67 (25%), Positives = 25/67 (37%), Gaps = 9/67 (13%)
Query: 237 SCPDCNRVYPTNSTLRAHM----ISHSTERPH-----NCPHCEKTFKRNQDLKFHLNQHT 287
C+R + T L H+ + + H CP K+FK L H+ HT
Sbjct: 27 PKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHT 86
Query: 288 GERPYKC 294
GE+
Sbjct: 87 GEKSGPS 93
Score = 28.4 bits (63), Expect = 1.2
Identities = 7/34 (20%), Positives = 11/34 (32%)
Query: 286 HTGERPYKCPFCPRTFASSGNCFSHRKRMHEGET 319
+ C RTF++ +H H G
Sbjct: 20 DEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGP 53
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.3 bits (116), Expect = 3e-08
Identities = 15/41 (36%), Positives = 18/41 (43%)
Query: 254 HMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKC 294
S + E+P+ C C K F R L H HTGER
Sbjct: 3 SGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGP 43
Score = 37.5 bits (88), Expect = 2e-04
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 282 HLNQHTGERPYKCPFCPRTFASSGNCFSHRKRMHEGE 318
+ TGE+PYKC C + F H ++ H GE
Sbjct: 3 SGSSGTGEKPYKCSDCGKAFTRKSGLHIH-QQSHTGE 38
Score = 25.5 bits (57), Expect = 3.6
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 238 CPDCNRVYPTNSTLRAHMISHSTERPHNC 266
C DC + + S L H SH+ ER
Sbjct: 15 CSDCGKAFTRKSGLHIHQQSHTGERHSGP 43
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.3 bits (116), Expect = 3e-08
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 253 AHMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKC 294
+ S S E+P C C K F++N L HL HTGE+P
Sbjct: 2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGP 43
Score = 37.1 bits (87), Expect = 3e-04
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 286 HTGERPYKCPFCPRTFASSGNCFSHRKRMHEGE 318
+GE+P+KC C + F + + SH R+H GE
Sbjct: 7 GSGEKPFKCKECGKAFRQNIHLASH-LRIHTGE 38
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.3 bits (116), Expect = 3e-08
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 253 AHMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKC 294
+ S + E+P+ C C K F L H+ H+GE+P
Sbjct: 2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGP 43
Score = 37.1 bits (87), Expect = 3e-04
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 282 HLNQHTGERPYKCPFCPRTFASSGNCFSHRKRMHEGE 318
+ GE+PY C C + F+S H R H GE
Sbjct: 3 SGSSGAGEKPYGCSECGKAFSSKSYLIIH-MRTHSGE 38
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 47.9 bits (115), Expect = 4e-08
Identities = 13/38 (34%), Positives = 15/38 (39%)
Query: 257 SHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKC 294
S E+P C CEK F L H H E+P
Sbjct: 4 GSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 37.1 bits (87), Expect = 3e-04
Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 286 HTGERPYKCPFCPRTFASSGNCFSHRKRMHEGE 318
+GE+P+ C C + F+S H ++ H E
Sbjct: 5 SSGEKPFGCSCCEKAFSSKSYLLVH-QQTHAEE 36
Score = 26.0 bits (58), Expect = 2.9
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 238 CPDCNRVYPTNSTLRAHMISHSTERPHNC 266
C C + + + S L H +H+ E+P
Sbjct: 13 CSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 45
Score = 47.9 bits (115), Expect = 4e-08
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 253 AHMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKC 294
+ S + ++P C HC K+F+ +L H HTGE+
Sbjct: 2 SSGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 39.1 bits (92), Expect = 6e-05
Identities = 13/37 (35%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 282 HLNQHTGERPYKCPFCPRTFASSGNCFSHRKRMHEGE 318
+ TG++P++C C ++F + GN +H+ R+H GE
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQ-RIHTGE 38
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.9 bits (115), Expect = 4e-08
Identities = 15/42 (35%), Positives = 18/42 (42%)
Query: 253 AHMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKC 294
+ S + E P C C K F +L H HTGERP
Sbjct: 2 SSGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGP 43
Score = 38.6 bits (91), Expect = 9e-05
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 282 HLNQHTGERPYKCPFCPRTFASSGNCFSHRKRMHEGE 318
+ TGE P+ C C + F N H+ ++H GE
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQ-KIHTGE 38
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 47.9 bits (115), Expect = 4e-08
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 253 AHMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKC 294
+ S + E+ +NC C K+F R L H H+GE+P
Sbjct: 2 SSGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGP 43
Score = 39.4 bits (93), Expect = 4e-05
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 282 HLNQHTGERPYKCPFCPRTFASSGNCFSHRKRMHEGE 318
+ TGE+ Y C C ++F+ + H +R+H GE
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKH-ERLHSGE 38
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 48.0 bits (115), Expect = 4e-08
Identities = 11/42 (26%), Positives = 15/42 (35%)
Query: 253 AHMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKC 294
+ S + E+P C C F + L HL H P
Sbjct: 2 SSGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGP 43
Score = 43.3 bits (103), Expect = 2e-06
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 282 HLNQHTGERPYKCPFCPRTFASSGNCFSHRKRMHEGE 318
+ TGE+P++C C F+ S + F H R HE
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKH-LRSHERT 38
Score = 30.6 bits (70), Expect = 0.061
Identities = 7/31 (22%), Positives = 12/31 (38%)
Query: 238 CPDCNRVYPTNSTLRAHMISHSTERPHNCPH 268
C +C + + +L H+ SH P
Sbjct: 15 CKECGMNFSWSCSLFKHLRSHERTDPSGPSS 45
Score = 27.5 bits (62), Expect = 0.80
Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 3/30 (10%)
Query: 181 YQCPLCNKKINTKSNLRRHLQAH---KPKG 207
+QC C + +L +HL++H P G
Sbjct: 13 FQCKECGMNFSWSCSLFKHLRSHERTDPSG 42
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.9 bits (115), Expect = 4e-08
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 253 AHMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKC 294
+ S + E+P+ C C K + +L H HTGERP
Sbjct: 2 SSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGP 43
Score = 39.8 bits (94), Expect = 4e-05
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 282 HLNQHTGERPYKCPFCPRTFASSGNCFSHRKRMHEGE 318
+ TGE+PYKC C + + S N H +++H GE
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMH-QKVHTGE 38
Score = 24.8 bits (55), Expect = 6.2
Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 3/28 (10%)
Query: 181 YQCPLCNKKINTKSNLRRHLQAH---KP 205
Y+C C K N+K NL H + H +P
Sbjct: 13 YKCEKCGKGYNSKFNLDMHQKVHTGERP 40
Score = 24.4 bits (54), Expect = 8.3
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 238 CPDCNRVYPTNSTLRAHMISHSTERPHNC 266
C C + Y + L H H+ ERP
Sbjct: 15 CEKCGKGYNSKFNLDMHQKVHTGERPSGP 43
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.9 bits (115), Expect = 4e-08
Identities = 12/42 (28%), Positives = 19/42 (45%)
Query: 253 AHMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKC 294
+ S + E+P+ C C K F +L H HT ++P
Sbjct: 2 SSGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGP 43
Score = 37.5 bits (88), Expect = 2e-04
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 282 HLNQHTGERPYKCPFCPRTFASSGNCFSHRKRMHEGE 318
+ TGE+PY C C + F N H+ ++H +
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQ-KIHTKQ 38
Score = 25.2 bits (56), Expect = 5.4
Identities = 7/31 (22%), Positives = 13/31 (41%)
Query: 238 CPDCNRVYPTNSTLRAHMISHSTERPHNCPH 268
C +C + + S L H H+ ++P
Sbjct: 15 CAECGKAFTIRSNLIKHQKIHTKQKPSGPSS 45
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 47.9 bits (115), Expect = 5e-08
Identities = 15/41 (36%), Positives = 19/41 (46%)
Query: 254 HMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKC 294
S + +RP+ C C K FK L H HTGE+P
Sbjct: 3 SGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGP 43
Score = 38.7 bits (91), Expect = 7e-05
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 282 HLNQHTGERPYKCPFCPRTFASSGNCFSHRKRMHEGE 318
+ TG+RPY+C C + F + + HR R H GE
Sbjct: 3 SGSSGTGQRPYECIECGKAFKTKSSLICHR-RSHTGE 38
Score = 25.2 bits (56), Expect = 5.0
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 238 CPDCNRVYPTNSTLRAHMISHSTERPHNC 266
C +C + + T S+L H SH+ E+P
Sbjct: 15 CIECGKAFKTKSSLICHRRSHTGEKPSGP 43
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.9 bits (115), Expect = 5e-08
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 253 AHMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKC 294
+ S + ++ C C+KTF ++ L H HTGE+P
Sbjct: 2 SSGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGP 43
Score = 37.1 bits (87), Expect = 3e-04
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 282 HLNQHTGERPYKCPFCPRTFASSGNCFSHRKRMHEGE 318
+ G++ +KC C +TF S + H+ R+H GE
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQ-RIHTGE 38
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.5 bits (114), Expect = 5e-08
Identities = 16/41 (39%), Positives = 19/41 (46%)
Query: 254 HMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKC 294
S S E+P C C K F +N L H HTGE+P
Sbjct: 3 SGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGP 43
Score = 38.3 bits (90), Expect = 1e-04
Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 282 HLNQHTGERPYKCPFCPRTFASSGNCFSHRKRMHEGE 318
+ +GE+P++C C + F + + SH+ R+H GE
Sbjct: 3 SGSSGSGEKPFQCEECGKRFTQNSHLHSHQ-RVHTGE 38
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.5 bits (114), Expect = 5e-08
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 253 AHMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKC 294
+ S + E+P+ C C K+F+ L H HTGE+P
Sbjct: 2 SSGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGP 43
Score = 37.9 bits (89), Expect = 1e-04
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 282 HLNQHTGERPYKCPFCPRTFASSGNCFSHRKRMHEGE 318
+ TGE+PYKC C ++F + H +R+H GE
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVH-QRIHTGE 38
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 47.6 bits (113), Expect = 5e-08
Identities = 13/41 (31%), Positives = 17/41 (41%)
Query: 257 SHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKCPFC 297
S T + C C K F+ L H H+GE+PY
Sbjct: 6 SGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 32.6 bits (74), Expect = 0.013
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 237 SCPDCNRVYPTNSTLRAHMISHSTERPHNCPHC 269
+C C +++ L H +SHS E+P++
Sbjct: 14 ACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 26.8 bits (59), Expect = 1.4
Identities = 8/34 (23%), Positives = 11/34 (32%), Gaps = 1/34 (2%)
Query: 285 QHTGERPYKCPFCPRTFASSGNCFSHRKRMHEGE 318
+ C C + F + H K H GE
Sbjct: 6 SGRTRKQVACEICGKIFRDVYHLNRH-KLSHSGE 38
Score = 26.4 bits (58), Expect = 2.0
Identities = 7/35 (20%), Positives = 14/35 (40%)
Query: 180 RYQCPLCNKKINTKSNLRRHLQAHKPKGKHTCEIC 214
+ C +C K +L RH +H + ++
Sbjct: 12 QVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 25.3 bits (55), Expect = 6.0
Identities = 8/31 (25%), Positives = 10/31 (32%)
Query: 69 RRKNGPKPYQCAICPRGYYSDIGLQNHLWSH 99
K C IC + + L H SH
Sbjct: 5 SSGRTRKQVACEICGKIFRDVYHLNRHKLSH 35
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 47.5 bits (114), Expect = 5e-08
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 253 AHMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKC 294
+ S + E+P+ C C K F +DL H HTGE+P
Sbjct: 2 SSGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGP 43
Score = 39.4 bits (93), Expect = 4e-05
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 282 HLNQHTGERPYKCPFCPRTFASSGNCFSHRKRMHEGE 318
+ TGE+PYKC C + F + ++H +H GE
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTH-HMVHTGE 38
Score = 25.2 bits (56), Expect = 5.7
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 238 CPDCNRVYPTNSTLRAHMISHSTERPHNC 266
C +C + + L H + H+ E+P
Sbjct: 15 CEECGKGFICRRDLYTHHMVHTGEKPSGP 43
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 47.6 bits (114), Expect = 5e-08
Identities = 10/42 (23%), Positives = 15/42 (35%)
Query: 253 AHMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKC 294
+ S + E+P C C K F L H H ++
Sbjct: 2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 37.5 bits (88), Expect = 2e-04
Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 282 HLNQHTGERPYKCPFCPRTFASSGNCFSHRKRMHEGE 318
+ TGE+P KC C + F H +R H +
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIMH-QRTHVDD 38
Score = 26.0 bits (58), Expect = 2.4
Identities = 6/29 (20%), Positives = 12/29 (41%)
Query: 238 CPDCNRVYPTNSTLRAHMISHSTERPHNC 266
C +C + + S L H +H ++
Sbjct: 15 CTECGKAFCWKSQLIMHQRTHVDDKHSGP 43
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.5 bits (114), Expect = 5e-08
Identities = 14/41 (34%), Positives = 17/41 (41%)
Query: 254 HMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKC 294
S + E P+ C C K F R L H H GE+P
Sbjct: 3 SGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGP 43
Score = 37.9 bits (89), Expect = 1e-04
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 282 HLNQHTGERPYKCPFCPRTFASSGNCFSHRKRMHEGE 318
+ TGE PY+C C + F+ SH+ R H GE
Sbjct: 3 SGSSGTGENPYECHECGKAFSRKYQLISHQ-RTHAGE 38
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 47.5 bits (114), Expect = 6e-08
Identities = 15/42 (35%), Positives = 19/42 (45%)
Query: 253 AHMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKC 294
+ S + E+P C C K F R L H HTGE+P
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGP 43
Score = 37.5 bits (88), Expect = 2e-04
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 282 HLNQHTGERPYKCPFCPRTFASSGNCFSHRKRMHEGE 318
+ TGE+P+KC C + F+ H ++H GE
Sbjct: 3 SGSSGTGEKPFKCVECGKGFSRRSALNVHH-KLHTGE 38
Score = 25.6 bits (57), Expect = 4.2
Identities = 8/31 (25%), Positives = 13/31 (41%)
Query: 238 CPDCNRVYPTNSTLRAHMISHSTERPHNCPH 268
C +C + + S L H H+ E+P
Sbjct: 15 CVECGKGFSRRSALNVHHKLHTGEKPSGPSS 45
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.5 bits (114), Expect = 6e-08
Identities = 16/41 (39%), Positives = 19/41 (46%)
Query: 254 HMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKC 294
S + E+PH C C K+F N L H HTGE P
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGP 43
Score = 37.9 bits (89), Expect = 1e-04
Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 282 HLNQHTGERPYKCPFCPRTFASSGNCFSHRKRMHEGE 318
+ TGE+P++C C ++F+ + H +R+H GE
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNSQLIVH-QRIHTGE 38
Score = 25.6 bits (57), Expect = 3.4
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 238 CPDCNRVYPTNSTLRAHMISHSTERPHNCPH 268
C +C + + NS L H H+ E P
Sbjct: 15 CRECGKSFSFNSQLIVHQRIHTGENPSGPSS 45
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.5 bits (114), Expect = 6e-08
Identities = 16/41 (39%), Positives = 19/41 (46%)
Query: 254 HMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKC 294
S S E+P C C K F +N L H HTGE+P
Sbjct: 3 SGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGP 43
Score = 38.7 bits (91), Expect = 7e-05
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 282 HLNQHTGERPYKCPFCPRTFASSGNCFSHRKRMHEGE 318
+ +GE+P+KC C + F + SH +R+H GE
Sbjct: 3 SGSSGSGEKPFKCEECGKRFTQNSQLHSH-QRVHTGE 38
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.5 bits (114), Expect = 6e-08
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 253 AHMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKC 294
+ S + E+P+ C C K F+ + +L H HTGE+P
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGP 43
Score = 38.6 bits (91), Expect = 8e-05
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 282 HLNQHTGERPYKCPFCPRTFASSGNCFSHRKRMHEGE 318
+ TGE+PYKC C + F + N +H + +H GE
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTH-QVIHTGE 38
Score = 24.8 bits (55), Expect = 7.3
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 238 CPDCNRVYPTNSTLRAHMISHSTERPHNC 266
C +C + + +S L H + H+ E+P
Sbjct: 15 CNECGKAFRAHSNLTTHQVIHTGEKPSGP 43
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.5 bits (114), Expect = 6e-08
Identities = 13/41 (31%), Positives = 17/41 (41%)
Query: 254 HMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKC 294
S + ER + C C K F + L H H GE+P
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGP 43
Score = 36.7 bits (86), Expect = 4e-04
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 282 HLNQHTGERPYKCPFCPRTFASSGNCFSHRKRMHEGE 318
+ TGER Y+C C + F H +R+H GE
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMH-QRIHRGE 38
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.5 bits (114), Expect = 6e-08
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 253 AHMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKC 294
+ S E+P+ C C K+F + L H HT E+P
Sbjct: 2 SSGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGP 43
Score = 39.4 bits (93), Expect = 4e-05
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 282 HLNQHTGERPYKCPFCPRTFASSGNCFSHRKRMHEGE 318
+ GE+PY+C C ++F+ S H H E
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQH-WITHTRE 38
Score = 25.2 bits (56), Expect = 5.6
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 238 CPDCNRVYPTNSTLRAHMISHSTERPHNC 266
C +C + + + L H I+H+ E+P
Sbjct: 15 CSECGKSFSGSYRLTQHWITHTREKPSGP 43
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.5 bits (114), Expect = 6e-08
Identities = 16/41 (39%), Positives = 19/41 (46%)
Query: 254 HMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKC 294
S S E+P+ C C K F R+ L H HTG RP
Sbjct: 3 SGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGP 43
Score = 36.7 bits (86), Expect = 4e-04
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 282 HLNQHTGERPYKCPFCPRTFASSGNCFSHRKRMHEGE 318
+ +GE+PYKC C + F + H +R+H G
Sbjct: 3 SGSSGSGEKPYKCSECGKAFHRHTHLNEH-RRIHTGY 38
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.5 bits (114), Expect = 7e-08
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 254 HMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKC 294
S + E+P+ C C K F Q L H H+G++P
Sbjct: 3 SGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGP 43
Score = 37.1 bits (87), Expect = 3e-04
Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 282 HLNQHTGERPYKCPFCPRTFASSGNCFSHRKRMHEGE 318
+ TGE+PY+C C + F+ + H +R+H G+
Sbjct: 3 SGSSGTGEKPYECSVCGKAFSHRQSLSVH-QRIHSGK 38
Score = 25.5 bits (57), Expect = 3.4
Identities = 7/31 (22%), Positives = 12/31 (38%)
Query: 238 CPDCNRVYPTNSTLRAHMISHSTERPHNCPH 268
C C + + +L H HS ++P
Sbjct: 15 CSVCGKAFSHRQSLSVHQRIHSGKKPSGPSS 45
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 47.5 bits (114), Expect = 7e-08
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 254 HMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKC 294
S + E+P C C K+F + L H HTGE+P
Sbjct: 3 SGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGP 43
Score = 37.9 bits (89), Expect = 1e-04
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 282 HLNQHTGERPYKCPFCPRTFASSGNCFSHRKRMHEGE 318
+ TGE+P++C C ++F+ S +H +R+H GE
Sbjct: 3 SGSSGTGEKPFECAECGKSFSISSQLATH-QRIHTGE 38
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.1 bits (113), Expect = 7e-08
Identities = 13/41 (31%), Positives = 18/41 (43%)
Query: 254 HMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKC 294
S + E+P++C C K F + L HL HT E
Sbjct: 3 SGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGP 43
Score = 37.5 bits (88), Expect = 2e-04
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 282 HLNQHTGERPYKCPFCPRTFASSGNCFSHRKRMHEGE 318
+ TGE+PY C C + F S + H R+H E
Sbjct: 3 SGSSGTGEKPYSCNVCGKAFVLSAHLNQH-LRVHTQE 38
Score = 25.2 bits (56), Expect = 5.7
Identities = 6/31 (19%), Positives = 12/31 (38%)
Query: 238 CPDCNRVYPTNSTLRAHMISHSTERPHNCPH 268
C C + + ++ L H+ H+ E
Sbjct: 15 CNVCGKAFVLSAHLNQHLRVHTQETLSGPSS 45
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.1 bits (113), Expect = 7e-08
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 253 AHMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKC 294
+ S + E+P C C+K F +L H HTGE+P
Sbjct: 2 SSGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGP 43
Score = 38.2 bits (90), Expect = 1e-04
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 282 HLNQHTGERPYKCPFCPRTFASSGNCFSHRKRMHEGE 318
+ TGE+P++C C + F + N H+ R H GE
Sbjct: 3 SGSSGTGEKPFECSECQKAFNTKSNLIVHQ-RTHTGE 38
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 47.1 bits (113), Expect = 7e-08
Identities = 12/39 (30%), Positives = 17/39 (43%)
Query: 254 HMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPY 292
S E+P+ C C F + L+ H+ HTG P
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPS 40
Score = 41.0 bits (97), Expect = 1e-05
Identities = 11/37 (29%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 282 HLNQHTGERPYKCPFCPRTFASSGNCFSHRKRMHEGE 318
GE+PYKC C F + +H +H G
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAH-VLIHTGS 37
Score = 25.6 bits (57), Expect = 3.0
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 238 CPDCNRVYPTNSTLRAHMISHSTERPHN 265
C C + + LRAH++ H+ P +
Sbjct: 14 CETCGARFVQVAHLRAHVLIHTGSGPSS 41
Score = 25.2 bits (56), Expect = 5.0
Identities = 8/28 (28%), Positives = 13/28 (46%), Gaps = 3/28 (10%)
Query: 181 YQCPLCNKKINTKSNLRRHLQAH---KP 205
Y+C C + ++LR H+ H P
Sbjct: 12 YKCETCGARFVQVAHLRAHVLIHTGSGP 39
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.1 bits (113), Expect = 7e-08
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 253 AHMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKC 294
+ S S E+P+ C C K F +N L H HTGE+P
Sbjct: 2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGP 43
Score = 38.2 bits (90), Expect = 1e-04
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 282 HLNQHTGERPYKCPFCPRTFASSGNCFSHRKRMHEGE 318
+ +GE+PYKC C + F + + +H R+H GE
Sbjct: 3 SGSSGSGEKPYKCNECGKVFTQNSHLTNH-WRIHTGE 38
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 47.2 bits (113), Expect = 7e-08
Identities = 14/42 (33%), Positives = 18/42 (42%)
Query: 253 AHMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKC 294
+ S S E+P C C K F N H H+GE+P
Sbjct: 2 SSGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGP 43
Score = 40.2 bits (95), Expect = 2e-05
Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 282 HLNQHTGERPYKCPFCPRTFASSGNCFSHRKRMHEGE 318
+ +GE+P+KC C + F ++ C+SH+ R H GE
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQ-RSHSGE 38
Score = 26.4 bits (59), Expect = 1.8
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 238 CPDCNRVYPTNSTLRAHMISHSTERPHNC 266
C +C + + TNS +H SHS E+P
Sbjct: 15 CEECGKGFYTNSQCYSHQRSHSGEKPSGP 43
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.1 bits (113), Expect = 7e-08
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 253 AHMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKC 294
+ S + ERP+ C C K F +L H HTGE+P
Sbjct: 2 SSGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
Score = 39.0 bits (92), Expect = 6e-05
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 282 HLNQHTGERPYKCPFCPRTFASSGNCFSHRKRMHEGE 318
+ TGERPY C C + F N H+ ++H GE
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQ-KIHTGE 38
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.1 bits (113), Expect = 8e-08
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 253 AHMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKC 294
+ S + E+P+NC C K F + L+ H HTGE+P
Sbjct: 2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGP 43
Score = 37.9 bits (89), Expect = 2e-04
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 282 HLNQHTGERPYKCPFCPRTFASSGNCFSHRKRMHEGE 318
+ TGE+PY C C + F H +R+H GE
Sbjct: 3 SGSSGTGEKPYNCEECGKAFIHDSQLQEH-QRIHTGE 38
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.1 bits (113), Expect = 8e-08
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 253 AHMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKC 294
+ S S E+P+ C C KTF + L H HTGE+P
Sbjct: 2 SSGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGP 43
Score = 37.5 bits (88), Expect = 2e-04
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 282 HLNQHTGERPYKCPFCPRTFASSGNCFSHRKRMHEGE 318
+ +GE+PY C C +TF+ +H +R H GE
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAH-QRTHTGE 38
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 47.1 bits (113), Expect = 8e-08
Identities = 15/41 (36%), Positives = 19/41 (46%)
Query: 254 HMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKC 294
S + E+ + C C K F RN L H HTGE+P
Sbjct: 3 SGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGP 43
Score = 38.3 bits (90), Expect = 9e-05
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 282 HLNQHTGERPYKCPFCPRTFASSGNCFSHRKRMHEGE 318
+ TGE+ YKC C + F+ + H +++H GE
Sbjct: 3 SGSSGTGEKRYKCNECGKVFSRNSQLSQH-QKIHTGE 38
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.1 bits (113), Expect = 8e-08
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 254 HMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKC 294
S S E+P+ C +C K F + +L H HTGE+P
Sbjct: 3 SGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGP 43
Score = 37.9 bits (89), Expect = 2e-04
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 282 HLNQHTGERPYKCPFCPRTFASSGNCFSHRKRMHEGE 318
+ +GE+PY C +C + F S H +R+H GE
Sbjct: 3 SGSSGSGEKPYVCDYCGKAFGLSAELVRH-QRIHTGE 38
Score = 24.8 bits (55), Expect = 6.4
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 238 CPDCNRVYPTNSTLRAHMISHSTERPHNC 266
C C + + ++ L H H+ E+P
Sbjct: 15 CDYCGKAFGLSAELVRHQRIHTGEKPSGP 43
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.1 bits (113), Expect = 8e-08
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 253 AHMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKC 294
+ S + E+P+ C C K F+RN L H HTGE+P
Sbjct: 2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGP 43
Score = 35.9 bits (84), Expect = 7e-04
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 282 HLNQHTGERPYKCPFCPRTFASSGNCFSHRKRMHEGE 318
+ TGE+PYKC C + F + + H + +H GE
Sbjct: 3 SGSSGTGEKPYKCHECGKVFRRNSHLARH-QLIHTGE 38
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.1 bits (113), Expect = 8e-08
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 254 HMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKC 294
S E+ + C C K F ++ L+ H HTGE+P
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43
Score = 38.7 bits (91), Expect = 8e-05
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 282 HLNQHTGERPYKCPFCPRTFASSGNCFSHRKRMHEGE 318
+ GE+ YKC C + F+ S + +H +R+H GE
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTH-QRVHTGE 38
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 47.2 bits (113), Expect = 8e-08
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 253 AHMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKC 294
+ S + E+P+NC C K+F+ L H H+GE+P
Sbjct: 2 SSGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGP 43
Score = 38.3 bits (90), Expect = 1e-04
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 282 HLNQHTGERPYKCPFCPRTFASSGNCFSHRKRMHEGE 318
+ TGE+PY C C ++F + H +R+H GE
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWASCLLKH-QRVHSGE 38
Score = 24.5 bits (54), Expect = 9.2
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 238 CPDCNRVYPTNSTLRAHMISHSTERPHNC 266
C +C + + S L H HS E+P
Sbjct: 15 CKECGKSFRWASCLLKHQRVHSGEKPSGP 43
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 47.1 bits (113), Expect = 8e-08
Identities = 12/42 (28%), Positives = 17/42 (40%)
Query: 253 AHMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKC 294
+ S + +P+ C C K F+ L H HTGE
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 38.6 bits (91), Expect = 8e-05
Identities = 13/37 (35%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 282 HLNQHTGERPYKCPFCPRTFASSGNCFSHRKRMHEGE 318
+ TG +PY C C + F S H R H GE
Sbjct: 3 SGSSGTGMKPYVCNECGKAFRSKSYLIIH-TRTHTGE 38
Score = 24.8 bits (55), Expect = 7.8
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 238 CPDCNRVYPTNSTLRAHMISHSTERPHNC 266
C +C + + + S L H +H+ E +
Sbjct: 15 CNECGKAFRSKSYLIIHTRTHTGESGPSS 43
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 47.1 bits (113), Expect = 9e-08
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 253 AHMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKC 294
+ S + E+P+ C C+K F +L H HTGE
Sbjct: 2 SSGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 38.6 bits (91), Expect = 9e-05
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 282 HLNQHTGERPYKCPFCPRTFASSGNCFSHRKRMHEGE 318
+ TGE+PY+C C + F + N H +R H GE
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVH-QRTHTGE 38
Score = 24.7 bits (55), Expect = 6.9
Identities = 12/28 (42%), Positives = 14/28 (50%), Gaps = 3/28 (10%)
Query: 181 YQCPLCNKKINTKSNLRRHLQAH---KP 205
Y+C C K NTKSNL H + H
Sbjct: 13 YECNECQKAFNTKSNLMVHQRTHTGESG 40
Score = 24.4 bits (54), Expect = 8.3
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 238 CPDCNRVYPTNSTLRAHMISHSTERPHNC 266
C +C + + T S L H +H+ E +
Sbjct: 15 CNECQKAFNTKSNLMVHQRTHTGESGPSS 43
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.1 bits (113), Expect = 9e-08
Identities = 15/41 (36%), Positives = 20/41 (48%)
Query: 254 HMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKC 294
S + E+P+ C C K F+ N L H HTGE+P
Sbjct: 3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGP 43
Score = 37.1 bits (87), Expect = 3e-04
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 282 HLNQHTGERPYKCPFCPRTFASSGNCFSHRKRMHEGE 318
+ TGE+PYKC C + F + H +R+H GE
Sbjct: 3 SGSSGTGEKPYKCNECGKVFRHNSYLSRH-QRIHTGE 38
Score = 24.8 bits (55), Expect = 6.8
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 238 CPDCNRVYPTNSTLRAHMISHSTERPHNC 266
C +C +V+ NS L H H+ E+P
Sbjct: 15 CNECGKVFRHNSYLSRHQRIHTGEKPSGP 43
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 47.1 bits (113), Expect = 9e-08
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 254 HMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKC 294
S + E+P C C K++ + L H HTGE+P
Sbjct: 3 SGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGP 43
Score = 37.1 bits (87), Expect = 3e-04
Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 282 HLNQHTGERPYKCPFCPRTFASSGNCFSHRKRMHEGE 318
+ TGE+P+KC C +++ + H +R+H GE
Sbjct: 3 SGSSGTGEKPFKCGECGKSYNQRVHLTQH-QRVHTGE 38
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 46.7 bits (112), Expect = 9e-08
Identities = 13/38 (34%), Positives = 14/38 (36%)
Query: 257 SHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKC 294
S E P+ C C K F R L H H GE
Sbjct: 4 GSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 36.7 bits (86), Expect = 4e-04
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 286 HTGERPYKCPFCPRTFASSGNCFSHRKRMHEGE 318
+GE PY+C C + F SH+ R H GE
Sbjct: 5 SSGENPYECSECGKAFNRKDQLISHQ-RTHAGE 36
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.7 bits (112), Expect = 9e-08
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 253 AHMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKC 294
+ S + ++P+ C C K F +N L H HTGE+P
Sbjct: 2 SSGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 36.3 bits (85), Expect = 5e-04
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 286 HTGERPYKCPFCPRTFASSGNCFSHRKRMHEGE 318
TG++PYKC C + F + + H + +H GE
Sbjct: 7 GTGKKPYKCNECGKVFTQNSHLARH-RGIHTGE 38
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.7 bits (112), Expect = 1e-07
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 253 AHMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKC 294
+ S + E+P+ C C K F +L H HTGE+P
Sbjct: 2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGP 43
Score = 38.3 bits (90), Expect = 1e-04
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 282 HLNQHTGERPYKCPFCPRTFASSGNCFSHRKRMHEGE 318
+ TGE+PY+C C + F N F+H +++H GE
Sbjct: 3 SGSSGTGEKPYRCAECGKAFTDRSNLFTH-QKIHTGE 38
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.7 bits (112), Expect = 1e-07
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 253 AHMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKC 294
+ S + E+P+ C C K F +N L H HTG +P
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGP 43
Score = 36.3 bits (85), Expect = 5e-04
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 282 HLNQHTGERPYKCPFCPRTFASSGNCFSHRKRMHEGE 318
+ TGE+PYKC C + F + + HR R+H G
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHR-RVHTGG 38
Score = 24.8 bits (55), Expect = 7.5
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 238 CPDCNRVYPTNSTLRAHMISHSTERPHNCPH 268
C +C +V+ NS L H H+ +P
Sbjct: 15 CNECGKVFTQNSHLARHRRVHTGGKPSGPSS 45
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.7 bits (112), Expect = 1e-07
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 253 AHMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKC 294
+ S + E+P+ C C K F +N L H HTGE+P
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 35.9 bits (84), Expect = 6e-04
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 282 HLNQHTGERPYKCPFCPRTFASSGNCFSHRKRMHEGE 318
+ TGE+PYKC C + F + + H + +H GE
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARH-RGIHTGE 38
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 46.7 bits (112), Expect = 1e-07
Identities = 16/41 (39%), Positives = 21/41 (51%)
Query: 254 HMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKC 294
S + ERPH C C K+F ++ L H HTGE+P
Sbjct: 3 SGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGP 43
Score = 37.1 bits (87), Expect = 3e-04
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 282 HLNQHTGERPYKCPFCPRTFASSGNCFSHRKRMHEGE 318
+ TGERP+KC C ++F S + H+ R+H GE
Sbjct: 3 SGSSGTGERPHKCNECGKSFIQSAHLIQHQ-RIHTGE 38
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.7 bits (112), Expect = 1e-07
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 253 AHMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKC 294
+ S + E+P C C K+F L H HT E+P
Sbjct: 2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGP 43
Score = 38.2 bits (90), Expect = 1e-04
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 282 HLNQHTGERPYKCPFCPRTFASSGNCFSHRKRMHEGE 318
+ TGE+P+KC C ++F H +H E
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRLNRH-SMVHTAE 38
Score = 25.1 bits (56), Expect = 5.0
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 238 CPDCNRVYPTNSTLRAHMISHSTERPHNC 266
C C + + S L H + H+ E+P
Sbjct: 15 CDICGKSFCGRSRLNRHSMVHTAEKPSGP 43
Score = 24.8 bits (55), Expect = 7.0
Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 3/28 (10%)
Query: 181 YQCPLCNKKINTKSNLRRHLQAH---KP 205
++C +C K +S L RH H KP
Sbjct: 13 FKCDICGKSFCGRSRLNRHSMVHTAEKP 40
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.4 bits (111), Expect = 1e-07
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 253 AHMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKC 294
+ S + E+P+ C C K F +N L H HTG +P
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGP 43
Score = 37.1 bits (87), Expect = 3e-04
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 282 HLNQHTGERPYKCPFCPRTFASSGNCFSHRKRMHEGE 318
+ TGE+PYKC C + F + + +H +R+H G
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLANH-QRIHTGV 38
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.4 bits (111), Expect = 1e-07
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 253 AHMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKC 294
+ S + E+P+ C C K F N H HTG+RP
Sbjct: 2 SSGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGP 43
Score = 39.5 bits (93), Expect = 4e-05
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 282 HLNQHTGERPYKCPFCPRTFASSGNCFSHRKRMHEGE 318
+ TGE+PYKC C + F + +C H +R+H G+
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQH-QRLHTGQ 38
Score = 26.4 bits (59), Expect = 2.2
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 238 CPDCNRVYPTNSTLRAHMISHSTERPHNCPH 268
C +C + + NS+ H H+ +RP
Sbjct: 15 CMECGKAFGDNSSCTQHQRLHTGQRPSGPSS 45
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.4 bits (111), Expect = 1e-07
Identities = 13/42 (30%), Positives = 17/42 (40%)
Query: 253 AHMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKC 294
+ S + + C C K F R L H HTGE+P
Sbjct: 2 SSGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGP 43
Score = 36.3 bits (85), Expect = 5e-04
Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 282 HLNQHTGERPYKCPFCPRTFASSGNCFSHRKRMHEGE 318
+ TG + ++C C + F H +++H GE
Sbjct: 3 SGSSGTGGKHFECTECGKAFTRKSTLSMH-QKIHTGE 38
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 46.3 bits (111), Expect = 2e-07
Identities = 12/42 (28%), Positives = 17/42 (40%)
Query: 253 AHMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKC 294
+ S + E P+ C C K F R L H H+G+
Sbjct: 2 SSGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 36.7 bits (86), Expect = 3e-04
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 282 HLNQHTGERPYKCPFCPRTFASSGNCFSHRKRMHEGE 318
+ TGE PY+C C + F+ SH+ + H G+
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSHQ-KTHSGQ 38
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.4 bits (111), Expect = 2e-07
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 253 AHMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKC 294
+ S + E+P+ C C K F + L H HTGE+P
Sbjct: 2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGP 43
Score = 37.9 bits (89), Expect = 1e-04
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 282 HLNQHTGERPYKCPFCPRTFASSGNCFSHRKRMHEGE 318
+ TGE+PY+C C + F + H ++ H GE
Sbjct: 3 SGSSGTGEKPYECKVCSKAFTQKAHLAQH-QKTHTGE 38
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.4 bits (111), Expect = 2e-07
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 253 AHMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKC 294
+ S + E+P+ C C K+F + L H HTGE+P
Sbjct: 2 SSGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGP 43
Score = 37.1 bits (87), Expect = 3e-04
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 282 HLNQHTGERPYKCPFCPRTFASSGNCFSHRKRMHEGE 318
+ TGE+PY C C ++F + H +R+H GE
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRH-RRIHTGE 38
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 46.0 bits (110), Expect = 2e-07
Identities = 13/41 (31%), Positives = 17/41 (41%)
Query: 254 HMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKC 294
S S+ + H C C + F L H HTGE+P
Sbjct: 3 SGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGP 43
Score = 37.1 bits (87), Expect = 3e-04
Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 282 HLNQHTGERPYKCPFCPRTFASSGNCFSHRKRMHEGE 318
+ + + ++C C R F + H +R+H GE
Sbjct: 3 SGSSGSSTKSHQCHECGRGFTLKSHLNQH-QRIHTGE 38
Score = 24.4 bits (54), Expect = 9.1
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
Query: 181 YQCPLCNKKINTKSNLRRHLQAH---KPKG 207
+QC C + KS+L +H + H KP G
Sbjct: 13 HQCHECGRGFTLKSHLNQHQRIHTGEKPSG 42
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 45.9 bits (110), Expect = 2e-07
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 253 AHMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKC 294
+ S + E+P+ C C K F +N L H HTGE+P
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGP 43
Score = 37.1 bits (87), Expect = 3e-04
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 282 HLNQHTGERPYKCPFCPRTFASSGNCFSHRKRMHEGE 318
+ TGE+PYKC C + F + + H + +H GE
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLVRH-RGIHTGE 38
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.0 bits (110), Expect = 2e-07
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 254 HMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKC 294
S + E+P+ C C K F + L H H+GE+P
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGP 43
Score = 37.9 bits (89), Expect = 1e-04
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 282 HLNQHTGERPYKCPFCPRTFASSGNCFSHRKRMHEGE 318
+ TGE+PY+C C + F+ + H +R+H GE
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQH-QRVHSGE 38
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 46.0 bits (110), Expect = 2e-07
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 254 HMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKC 294
S + E+P+ C C K F + L H HTGE+P
Sbjct: 3 SGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGP 43
Score = 36.7 bits (86), Expect = 3e-04
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 282 HLNQHTGERPYKCPFCPRTFASSGNCFSHRKRMHEGE 318
+ TGE+PY+C C + F+ + + H+ R+H GE
Sbjct: 3 SGSSGTGEKPYECKECGKAFSQTTHLIQHQ-RVHTGE 38
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.0 bits (110), Expect = 2e-07
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 254 HMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKC 294
S + E+P+ C C K F + L H HTGE+P
Sbjct: 3 SGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGP 43
Score = 37.5 bits (88), Expect = 2e-04
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 282 HLNQHTGERPYKCPFCPRTFASSGNCFSHRKRMHEGE 318
+ TGE+PYKC C + F+ + H +R+H GE
Sbjct: 3 SGSSGTGEKPYKCNECGKAFSQTSKLARH-QRIHTGE 38
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 46.0 bits (110), Expect = 2e-07
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 254 HMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKC 294
S + E+P+ C C K F+ + L H + H+GERP
Sbjct: 3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGP 43
Score = 38.3 bits (90), Expect = 1e-04
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 282 HLNQHTGERPYKCPFCPRTFASSGNCFSHRKRMHEGE 318
+ TGE+PYKC C + F S + H +H GE
Sbjct: 3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQH-HSVHSGE 38
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 46.0 bits (110), Expect = 2e-07
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 253 AHMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKC 294
+ S + E+P+ C C K F + +L H HTGE+P
Sbjct: 2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGP 43
Score = 38.3 bits (90), Expect = 1e-04
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 282 HLNQHTGERPYKCPFCPRTFASSGNCFSHRKRMHEGE 318
+ TGE+PY+C C + FA N H +R+H GE
Sbjct: 3 SGSSGTGEKPYRCGECGKAFAQKANLTQH-QRIHTGE 38
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 45.6 bits (109), Expect = 2e-07
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 253 AHMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKC 294
+ S + +P+ C C K F + L H HTGE+P
Sbjct: 2 SSGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGP 43
Score = 37.5 bits (88), Expect = 2e-04
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 282 HLNQHTGERPYKCPFCPRTFASSGNCFSHRKRMHEGE 318
+ TG +PY+C C + F+ + H +R+H GE
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARH-QRVHTGE 38
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 45.6 bits (109), Expect = 2e-07
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 253 AHMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKC 294
+ S + +P+ C C K F L H HTGE+P
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGP 43
Score = 38.3 bits (90), Expect = 1e-04
Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 282 HLNQHTGERPYKCPFCPRTFASSGNCFSHRKRMHEGE 318
+ TG +PY C C + F+ + +H + +H GE
Sbjct: 3 SGSSGTGVKPYMCNECGKAFSVYSSLTTH-QVIHTGE 38
Score = 25.2 bits (56), Expect = 4.8
Identities = 8/31 (25%), Positives = 15/31 (48%)
Query: 238 CPDCNRVYPTNSTLRAHMISHSTERPHNCPH 268
C +C + + S+L H + H+ E+P
Sbjct: 15 CNECGKAFSVYSSLTTHQVIHTGEKPSGPSS 45
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 45.6 bits (109), Expect = 2e-07
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 254 HMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKC 294
S + E+P+ C C K F+ L H H+GE+P
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGP 43
Score = 37.1 bits (87), Expect = 3e-04
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 282 HLNQHTGERPYKCPFCPRTFASSGNCFSHRKRMHEGE 318
+ TGE+PYKC C + F + + H + H GE
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRARSSLAIH-QATHSGE 38
Score = 24.8 bits (55), Expect = 7.1
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 238 CPDCNRVYPTNSTLRAHMISHSTERPHNC 266
C +C + + S+L H +HS E+P
Sbjct: 15 CNECGKAFRARSSLAIHQATHSGEKPSGP 43
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 45.6 bits (109), Expect = 3e-07
Identities = 13/41 (31%), Positives = 18/41 (43%)
Query: 254 HMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKC 294
S + E+P+ C C K F L H HTG++P
Sbjct: 3 SGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGP 43
Score = 36.7 bits (86), Expect = 3e-04
Identities = 11/37 (29%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 282 HLNQHTGERPYKCPFCPRTFASSGNCFSHRKRMHEGE 318
+ TGE+PY+C C + F+ + +H + +H G+
Sbjct: 3 SGSSGTGEKPYECNQCGKAFSVRSSLTTH-QAIHTGK 38
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 45.6 bits (109), Expect = 3e-07
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 253 AHMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKC 294
+ S + E+P +C C K F + L H HTGE+P
Sbjct: 2 SSGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGP 43
Score = 39.0 bits (92), Expect = 7e-05
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 282 HLNQHTGERPYKCPFCPRTFASSGNCFSHRKRMHEGE 318
+ TGE+P+ C C + F+ H +R+H GE
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQH-RRIHTGE 38
Score = 25.6 bits (57), Expect = 4.4
Identities = 8/31 (25%), Positives = 13/31 (41%)
Query: 238 CPDCNRVYPTNSTLRAHMISHSTERPHNCPH 268
C DC + + + L H H+ E+P
Sbjct: 15 CIDCGKAFSDHIGLNQHRRIHTGEKPSGPSS 45
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 44.8 bits (107), Expect = 4e-07
Identities = 14/41 (34%), Positives = 17/41 (41%)
Query: 254 HMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKC 294
S ER H C C K F + + H HTGE+P
Sbjct: 3 SGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGP 43
Score = 41.4 bits (98), Expect = 1e-05
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 282 HLNQHTGERPYKCPFCPRTFASSGNCFSHRKRMHEGE 318
+ GER ++C C + F + N HR R+H GE
Sbjct: 3 SGSSGHGERGHRCSDCGKFFLQASNFIQHR-RIHTGE 38
Score = 24.4 bits (54), Expect = 8.2
Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 3/30 (10%)
Query: 181 YQCPLCNKKINTKSNLRRHLQAH---KPKG 207
++C C K SN +H + H KP G
Sbjct: 13 HRCSDCGKFFLQASNFIQHRRIHTGEKPSG 42
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 42
Score = 44.9 bits (107), Expect = 5e-07
Identities = 13/40 (32%), Positives = 17/40 (42%)
Query: 253 AHMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPY 292
S E+P+ C C K F + L H+ HTG P
Sbjct: 1 GSSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPS 40
Score = 39.5 bits (93), Expect = 3e-05
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 282 HLNQHTGERPYKCPFCPRTFASSGNCFSHRKRMHEGE 318
GE+PY+C C + F+ G+ H R+H G
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVH-IRVHTGS 37
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 44.9 bits (107), Expect = 5e-07
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 253 AHMISHSTERPHNCPHCEKTFKRNQDLKFHLNQ-HTGERPYKCP 295
+ S + ++P+ C C K F +N L H HTGE+P
Sbjct: 2 SSGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPS 45
Score = 39.1 bits (92), Expect = 6e-05
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 282 HLNQHTGERPYKCPFCPRTFASSGNCFSHRKRMHEGE 318
+ TG++PY+C C + F + + H + H GE
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGE 39
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 44.5 bits (106), Expect = 7e-07
Identities = 13/41 (31%), Positives = 16/41 (39%)
Query: 254 HMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKC 294
S S E+ H C C K F L+ H H GE+
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGP 43
Score = 36.8 bits (86), Expect = 4e-04
Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 282 HLNQHTGERPYKCPFCPRTFASSGNCFSHRKRMHEGE 318
+ +GE+ + C C + F H +R+H GE
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIH-QRVHMGE 38
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 50.0 bits (119), Expect = 7e-07
Identities = 39/226 (17%), Positives = 68/226 (30%), Gaps = 89/226 (39%)
Query: 8 SLLFL--------YKEDSSDVTIVKQEVESTK-LPSP--------------------AKS 38
++LF Y S +I++ +E+ + +PSP +
Sbjct: 301 TVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHL 360
Query: 39 PAKSKAGSI---------VV----KSLE----HLKDLKVTKK----KTVYDRRKNGPKPY 77
PA + I VV +SL L+ K + + RK K
Sbjct: 361 PAGKQV-EISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERK--LKFS 417
Query: 78 QC--AI-CPRGYYSDI------GLQNHLWSHRKILKNSNVGI--YYTFT-EDLREREDGE 125
+ P ++S + + L + ++ I Y TF DLR
Sbjct: 418 NRFLPVASP--FHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSI 475
Query: 126 KRKH--WIDENGGGENEMETPTPKKIGIREKVNWKK-TKITASNLL 168
+ I IR V W+ T+ A+++L
Sbjct: 476 SERIVDCI-------------------IRLPVKWETTTQFKATHIL 502
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 44
Score = 44.4 bits (106), Expect = 8e-07
Identities = 12/42 (28%), Positives = 15/42 (35%)
Query: 253 AHMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKC 294
+ S S E+P+ C C K F L H H G
Sbjct: 2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 36.0 bits (84), Expect = 7e-04
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 282 HLNQHTGERPYKCPFCPRTFASSGNCFSHRKRMHEGE 318
+ +GE+PY+C C + F H +R H G
Sbjct: 3 SGSSGSGEKPYECNECGKAFIWKSLLIVH-ERTHAGV 38
Score = 26.0 bits (58), Expect = 2.3
Identities = 6/29 (20%), Positives = 12/29 (41%)
Query: 238 CPDCNRVYPTNSTLRAHMISHSTERPHNC 266
C +C + + S L H +H+ +
Sbjct: 15 CNECGKAFIWKSLLIVHERTHAGVSGPSS 43
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 44.3 bits (104), Expect = 1e-06
Identities = 14/53 (26%), Positives = 26/53 (49%)
Query: 238 CPDCNRVYPTNSTLRAHMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGER 290
C +C S L+ H+ +H+ RP++C +C +FK +L H+ +
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 43.9 bits (103), Expect = 2e-06
Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Query: 266 CPHCEKTFKRNQDLKFHLNQHTGERPYKCPFCPRTFASSGNCFSHRKRMHEGE 318
C C K+ LK H+ HT RPY C +C +F + GN H +
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKH-MKSKAHS 55
Score = 39.7 bits (92), Expect = 5e-05
Identities = 16/52 (30%), Positives = 27/52 (51%)
Query: 180 RYQCPLCNKKINTKSNLRRHLQAHKPKGKHTCEICFRIFKTEINLTRHLECH 231
+Y C C + S L++H++ H + C C FKT+ NLT+H++
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSK 52
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Length = 42
Score = 42.7 bits (101), Expect = 3e-06
Identities = 10/37 (27%), Positives = 14/37 (37%)
Query: 257 SHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYK 293
S E P+ C C K+F + L H + P
Sbjct: 5 SSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSS 41
Score = 39.6 bits (93), Expect = 4e-05
Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 286 HTGERPYKCPFCPRTFASSGNCFSHRKRMHEGE 318
GE PY C C ++F G+ H +R
Sbjct: 6 SGGETPYLCGQCGKSFTQRGSLAVH-QRSCSQS 37
Score = 26.1 bits (58), Expect = 2.0
Identities = 7/27 (25%), Positives = 10/27 (37%)
Query: 238 CPDCNRVYPTNSTLRAHMISHSTERPH 264
C C + + +L H S S P
Sbjct: 14 CGQCGKSFTQRGSLAVHQRSCSQSGPS 40
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 42.7 bits (101), Expect = 3e-06
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 257 SHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKC 294
S E+P++C C++TF N L H HT +
Sbjct: 4 GSSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 41.9 bits (99), Expect = 5e-06
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 286 HTGERPYKCPFCPRTFASSGNCFSHRKRMHEGETLP 321
+GE+PY C C TF+ + H+ +MH ++ P
Sbjct: 5 SSGEKPYSCAECKETFSDNNRLVQHQ-KMHTVKSGP 39
Score = 24.6 bits (54), Expect = 7.0
Identities = 7/30 (23%), Positives = 13/30 (43%)
Query: 237 SCPDCNRVYPTNSTLRAHMISHSTERPHNC 266
SC +C + N+ L H H+ + +
Sbjct: 12 SCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 41.6 bits (98), Expect = 7e-06
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 282 HLNQHTGERPYKCPFCPRTFASSGNCFSHRKR 313
TG +P++CP C R+F+ S + HRKR
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKR 33
Score = 36.2 bits (84), Expect = 5e-04
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 254 HMISHSTERPHNCPHCEKTFKRNQDLKFHLNQH 286
+ +P CP C+++F R+ L H +H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 26.9 bits (60), Expect = 0.87
Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 6/34 (17%)
Query: 69 RRKNGPKPYQCAICPRGYY-SDIGLQNHLWSHRK 101
R G KP+QC C R + SD HL HRK
Sbjct: 4 RGSTGIKPFQCPDCDRSFSRSD-----HLALHRK 32
Score = 24.6 bits (54), Expect = 7.8
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 180 RYQCPLCNKKINTKSNLRRHLQAH 203
+QCP C++ + +L H + H
Sbjct: 11 PFQCPDCDRSFSRSDHLALHRKRH 34
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 39.9 bits (94), Expect = 3e-05
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 257 SHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPY 292
S +R + C C K+F++ L H HTG P
Sbjct: 4 GSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPS 39
Score = 36.8 bits (86), Expect = 3e-04
Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 286 HTGERPYKCPFCPRTFASSGNCFSHRKRMHEGE 318
+G+R Y+C C ++F G+ H +R+H G
Sbjct: 5 SSGQRVYECQECGKSFRQKGSLTLH-ERIHTGS 36
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 39.9 bits (94), Expect = 3e-05
Identities = 11/41 (26%), Positives = 15/41 (36%)
Query: 254 HMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKC 294
S + + +NC C K F R L H HT +
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
Score = 38.7 bits (91), Expect = 7e-05
Identities = 8/37 (21%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 286 HTGERPYKCPFCPRTFASSGNCFSHRKRMHEGETLPD 322
T + Y C C + F + H +++H ++ P
Sbjct: 7 GTDSKSYNCNECGKAFTRIFHLTRH-QKIHTRKSGPS 42
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 38.7 bits (90), Expect = 7e-05
Identities = 9/39 (23%), Positives = 15/39 (38%)
Query: 253 AHMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERP 291
+ S + E P C C++ F + L H H +
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSG 40
Score = 37.5 bits (87), Expect = 2e-04
Identities = 12/40 (30%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Query: 282 HLNQHTGERPYKCPFCPRTFASSGNCFSHRKRMHEGETLP 321
+ GE P+KC C R F H R H ++ P
Sbjct: 3 SGSSGAGENPFKCSKCDRVFTQRNYLVQHE-RTHARKSGP 41
Score = 24.8 bits (54), Expect = 7.6
Identities = 5/23 (21%), Positives = 13/23 (56%)
Query: 181 YQCPLCNKKINTKSNLRRHLQAH 203
++C C++ ++ L +H + H
Sbjct: 13 FKCSKCDRVFTQRNYLVQHERTH 35
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A
1are_A
Length = 29
Score = 38.1 bits (89), Expect = 8e-05
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 262 RPHNCPHCEKTFKRNQDLKFHLNQHTGER 290
R C C + F R + LK H HT E+
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 25.7 bits (57), Expect = 2.3
Identities = 11/32 (34%), Positives = 12/32 (37%), Gaps = 7/32 (21%)
Query: 290 RPYKCPFCPRTFASSGNCFSHRKR---MHEGE 318
R + C C R FA H KR H E
Sbjct: 1 RSFVCEVCTRAFARQ----EHLKRHYRSHTNE 28
Score = 24.6 bits (54), Expect = 5.0
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 208 KHTCEICFRIFKTEINLTRHLECH 231
CE+C R F + +L RH H
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSH 25
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 39.8 bits (92), Expect = 1e-04
Identities = 13/75 (17%), Positives = 21/75 (28%), Gaps = 4/75 (5%)
Query: 249 STLRAHMISHSTERPHNCPHCEKTFKRNQDLKFHLN-QHTGER---PYKCPFCPRTFASS 304
+ + E + C +C FH++ +H Y C C
Sbjct: 4 HHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRY 63
Query: 305 GNCFSHRKRMHEGET 319
H + H GE
Sbjct: 64 DALSEHNLKYHPGEE 78
Score = 30.9 bits (69), Expect = 0.15
Identities = 21/103 (20%), Positives = 31/103 (30%), Gaps = 26/103 (25%)
Query: 194 SNLRRHLQAHKPKGKHTCEICFRIFKTEINLTRHLE-CHDTVELSCPDCNRVYPTNSTLR 252
+ + Q K +G + C+ C T H++ H V L+
Sbjct: 4 HHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNS-------------- 49
Query: 253 AHMISHSTERPHNCPHCEKTFKRNQDLKFH-LNQHTGERPYKC 294
+ C C KR L H L H GE +K
Sbjct: 50 ----------SYVCVECNFLTKRYDALSEHNLKYHPGEENFKL 82
Score = 27.4 bits (60), Expect = 2.8
Identities = 14/73 (19%), Positives = 25/73 (34%), Gaps = 5/73 (6%)
Query: 164 ASNLLSYNNAMFSSGTRYQCPLCNKKINTKSNLRRHLQAHKPKGK----HTCEICFRIFK 219
A + +N Y+C C + + H+ + P + C C + K
Sbjct: 2 AHHHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTK 61
Query: 220 TEINLTRH-LECH 231
L+ H L+ H
Sbjct: 62 RYDALSEHNLKYH 74
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding
protein; NMR {Homo sapiens}
Length = 37
Score = 37.7 bits (88), Expect = 2e-04
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 256 ISHSTERPHNCPH--CEKTFKRNQDLKFHLNQHTGER 290
+ ++ H C C K + + L+ HL HTGER
Sbjct: 1 MDPGKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGER 37
Score = 27.7 bits (62), Expect = 0.55
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 239 PDCNRVYPTNSTLRAHMISHSTER 262
C +VY S LRAH+ H+ ER
Sbjct: 14 QGCGKVYGKTSHLRAHLRWHTGER 37
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 38.1 bits (88), Expect = 3e-04
Identities = 9/73 (12%), Positives = 19/73 (26%), Gaps = 8/73 (10%)
Query: 247 TNSTLRAHMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKCPFCPRTFASSGN 306
++ + H +R C C F R + + + C C +
Sbjct: 2 SSGSSGKRQKIHLGDRSQKCSKCGIIFIRR-------STLSRRKTPMCEKCRKDSCQEAA 54
Query: 307 CFSHRKRMHEGET 319
+ G+
Sbjct: 55 LNKD-EGNESGKK 66
Score = 33.9 bits (77), Expect = 0.009
Identities = 6/40 (15%), Positives = 12/40 (30%)
Query: 253 AHMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPY 292
+ S + C C K + L +G++
Sbjct: 29 IRRSTLSRRKTPMCEKCRKDSCQEAALNKDEGNESGKKTS 68
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 38.4 bits (88), Expect = 3e-04
Identities = 20/67 (29%), Positives = 26/67 (38%), Gaps = 2/67 (2%)
Query: 227 HLECHDTVELSCPDCNRV-YPTNSTLRAHM-ISHSTERPHNCPHCEKTFKRNQDLKFHLN 284
H+ E CP CN V T L+ HM + + C HC K FK L +H
Sbjct: 16 QRAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTM 75
Query: 285 QHTGERP 291
+P
Sbjct: 76 AEHSAKP 82
Score = 31.5 bits (70), Expect = 0.11
Identities = 13/60 (21%), Positives = 19/60 (31%), Gaps = 2/60 (3%)
Query: 265 NCPHCEKTFKRN-QDLKFHL-NQHTGERPYKCPFCPRTFASSGNCFSHRKRMHEGETLPD 322
CP C ++ LK H+ + KC C + F S H H +
Sbjct: 26 VCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAKPSDA 85
Score = 29.5 bits (65), Expect = 0.43
Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 180 RYQCPLCNKKI-NTKSNLRRHLQA-HKPKGKHTCEICFRIFKTEINLTRHL 228
CP CN T L++H++ K + C+ C + FK++ L H
Sbjct: 24 EAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHT 74
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 37.2 bits (85), Expect = 8e-04
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Query: 227 HLECHDTVELSCPDCNRV-YPTNSTLRAHMISHSTERPHNCPHCEKTFKRNQDLKFHLNQ 285
+LE D +SCP C V T L+ HM + E C HC K + +K+H+
Sbjct: 26 YLEIVDKGSVSCPTCQAVGRKTIEGLKKHMENCKQE-MFTCHHCGKQLRSLAGMKYHVMA 84
Query: 286 HTGERP 291
+ P
Sbjct: 85 NHNSLP 90
Score = 32.1 bits (72), Expect = 0.047
Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 2/52 (3%)
Query: 265 NCPHCEK-TFKRNQDLKFHLNQHTGERPYKCPFCPRTFASSGNCFSHRKRMH 315
+CP C+ K + LK H+ ++ + + C C + S H H
Sbjct: 36 SCPTCQAVGRKTIEGLKKHM-ENCKQEMFTCHHCGKQLRSLAGMKYHVMANH 86
Score = 31.4 bits (70), Expect = 0.11
Identities = 13/61 (21%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Query: 204 KPKGKHTCEICFRI-FKTEINLTRHLECHDTVELSCPDCNRVYPTNSTLRAHMISHSTER 262
KG +C C + KT L +H+E +C C + + + ++ H++++
Sbjct: 30 VDKGSVSCPTCQAVGRKTIEGLKKHMENCKQEMFTCHHCGKQLRSLAGMKYHVMANHNSL 89
Query: 263 P 263
P
Sbjct: 90 P 90
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens}
SCOP: g.37.1.1 PDB: 1va2_A
Length = 31
Score = 34.1 bits (79), Expect = 0.003
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 262 RPHNC--PHCEKTFKRNQDLKFHLNQHTGER 290
RP C +C K F R+ +L+ H HTGE+
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 26.4 bits (59), Expect = 1.4
Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 3/31 (9%)
Query: 290 RPYKC--PFCPRTFASSGNCFSHRKRMHEGE 318
RP+ C +C + F S H+ R H GE
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHK-RTHTGE 30
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 34.1 bits (77), Expect = 0.004
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 258 HSTERPHNCPHCEKTFKRNQDLKFHLNQHTG 288
S E+P++CP C FKR + +H+ H G
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
Score = 28.0 bits (61), Expect = 0.64
Identities = 9/32 (28%), Positives = 12/32 (37%)
Query: 286 HTGERPYKCPFCPRTFASSGNCFSHRKRMHEG 317
+GE+PY CP C F H +
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGS 36
Score = 25.6 bits (55), Expect = 4.0
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 181 YQCPLCNKKINTKSNLRRHLQAH 203
Y CP+C + K + H+++H
Sbjct: 11 YSCPVCGLRFKRKDRMSYHVRSH 33
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 35.7 bits (81), Expect = 0.006
Identities = 8/35 (22%), Positives = 18/35 (51%), Gaps = 11/35 (31%)
Query: 24 KQEV---EST-KLPSPAKSPAKSKAGSIVVK-SLE 53
KQ + +++ KL + +PA + +K ++E
Sbjct: 19 KQALKKLQASLKLYADDSAPA------LAIKATME 47
Score = 35.3 bits (80), Expect = 0.010
Identities = 10/28 (35%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 1 MKKHKENSLLFLYKEDSSDVTIVKQEVE 28
+KK + SL LY +DS+ +K +E
Sbjct: 22 LKK-LQASLK-LYADDSAPALAIKATME 47
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 75
Score = 33.8 bits (77), Expect = 0.009
Identities = 13/49 (26%), Positives = 17/49 (34%), Gaps = 2/49 (4%)
Query: 249 STLRAHMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKCPFC 297
S H + R C HC+ LK H + + G R C C
Sbjct: 3 SGSSGHEETECPLRLAVCQHCDLELSIL-KLKEHED-YCGARTELCGNC 49
Score = 29.6 bits (66), Expect = 0.24
Identities = 13/68 (19%), Positives = 19/68 (27%), Gaps = 2/68 (2%)
Query: 194 SNLRRHLQAHKPKGKHTCEICFRIFKTEINLTRHLECHDTVELSCPDCNRVYPTNSTLRA 253
S H + P C+ C + L H + C +C R L+
Sbjct: 3 SGSSGHEETECPLRLAVCQHCDLELS-ILKLKEHEDYCGARTELCGNCGR-NVLVKDLKT 60
Query: 254 HMISHSTE 261
H E
Sbjct: 61 HPEVCGRE 68
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha,
coiled coil, cytoplasm, metal- binding, UBL conjugation,
UBL conjugation pathway; 2.20A {Homo sapiens}
Length = 170
Score = 34.7 bits (79), Expect = 0.017
Identities = 23/130 (17%), Positives = 42/130 (32%), Gaps = 16/130 (12%)
Query: 175 FSSGTRYQCPLCNKKINTKSNLRRHLQAHKPKGKHTCEICFRIFKTEINLTRHLECHDTV 234
++CP+ N+ + ++ L A + + C RHLE H
Sbjct: 48 SIRDAGHKCPVDNEILL-ENQLFPDNFAKREILSLMVK-CPNEGCLHKMELRHLEDHQAH 105
Query: 235 ----ELSCPDCNRVYPTNSTLRAHMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGER 290
+ CP C R + + H++ R +C +C + +D + H
Sbjct: 106 CEFALMDCPQCQRPFQKFH-INIHILKDCPRRQVSCDNCAASMAF-EDKEIHDQN----- 158
Query: 291 PYKCPFCPRT 300
CP
Sbjct: 159 ---CPLALEH 165
Score = 32.0 bits (72), Expect = 0.16
Identities = 8/40 (20%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 262 RPHNCPHCEKTFKRNQDLKFHLNQHTGERPYKCPFCPRTF 301
+CP C++ F++ + H+ + R C C +
Sbjct: 109 ALMDCPQCQRPFQKF-HINIHILKDCPRRQVSCDNCAASM 147
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 35.6 bits (81), Expect = 0.028
Identities = 32/221 (14%), Positives = 64/221 (28%), Gaps = 67/221 (30%)
Query: 96 LWSHRKILKNSNVGIYYTFTEDLREREDGEKRKHWIDENGGGENEMETPTPKKIGIREKV 155
W L + + F E++ ++ + E P+
Sbjct: 68 FW----TLLSKQEEMVQKFVEEVLRINYK-----FLMSP--IKTEQRQPSMM-------- 108
Query: 156 NWKKTKITASNLLSYNNAMFSSGTRYQCPLCNKKINTKSNLRRHLQAHKPK--------- 206
+ I + L +N +F+ +Y ++ LR+ L +P
Sbjct: 109 --TRMYIEQRDRLYNDNQVFA---KYNVS----RLQPYLKLRQALLELRPAKNVLIDGVL 159
Query: 207 --GKHT------------CEICFRIFKTEINLTRHLECHDTVELSCPDCNRVYPTNSTLR 252
GK C++ F+IF +NL C+ + + L
Sbjct: 160 GSGKTWVALDVCLSYKVQCKMDFKIF--WLNLKN---CNSPETV-------LEMLQ-KLL 206
Query: 253 AHMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGERPYK 293
+ + T R H R ++ L + +PY+
Sbjct: 207 YQIDPNWTSRSD---HSSNIKLRIHSIQAELRRLLKSKPYE 244
Score = 28.3 bits (62), Expect = 4.8
Identities = 27/166 (16%), Positives = 56/166 (33%), Gaps = 29/166 (17%)
Query: 63 KKTVYDRRKNGPKPYQCAICPRGYYSDIGLQ--NHLWSHRKILKNSNVGIYYTFTEDLRE 120
K ++ +++ PK +I Y ++ ++ N HR I+ + N+ + + +
Sbjct: 413 KYSLVEKQ---PKESTISI--PSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPP 467
Query: 121 REDGEKRKHWIDENGGGENEMETPTPKKIGIREKV----NWKKTKI----TASNLLSYNN 172
D H I G + P+++ + V + + KI TA N
Sbjct: 468 YLDQYFYSH-I-----GHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSIL 521
Query: 173 AMFSSGTRY------QCPLCNKKINT-KSNLRRHLQAHKPKGKHTC 211
Y P + +N L + + + K+T
Sbjct: 522 NTLQQLKFYKPYICDNDPKYERLVNAILDFLPKI-EENLICSKYTD 566
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
classical zinc finger, transcription; NMR {Homo sapiens}
Length = 30
Score = 30.9 bits (69), Expect = 0.035
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 262 RPHNCPHCEKTFKRNQDLKFHLNQHTGER 290
+P+ C HC++ F L+ H+ HTGE+
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGEK 30
Score = 28.2 bits (62), Expect = 0.37
Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 290 RPYKCPFCPRTFASSGNCFSHRKRMHEGE 318
+PY C C R FA G H R+H GE
Sbjct: 2 KPYVCIHCQRQFADPGALQRH-VRIHTGE 29
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription;
NMR {Mus musculus} SCOP: g.37.1.1
Length = 35
Score = 30.9 bits (69), Expect = 0.044
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 286 HTGERPYKCPFCPRTFASSGNCFSHRK 312
+G+RP+ C C F + NC H K
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLK 28
Score = 27.0 bits (59), Expect = 0.81
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 176 SSGTR-YQCPLCNKKINTKSNLRRHLQAH 203
SSG R + C +C TK+N RHL+ H
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVH 30
Score = 25.5 bits (55), Expect = 3.2
Identities = 10/30 (33%), Positives = 12/30 (40%)
Query: 258 HSTERPHNCPHCEKTFKRNQDLKFHLNQHT 287
S +RP C C F + HL HT
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVHT 31
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 30.6 bits (68), Expect = 0.051
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 257 SHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGER 290
S S+ +P+ CP C +L HL +HTGE+
Sbjct: 3 SGSSGKPYKCPQCSYASAIKANLNVHLRKHTGEK 36
Score = 26.3 bits (57), Expect = 1.5
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 176 SSGTRYQCPLCNKKINTKSNLRRHLQAH 203
SSG Y+CP C+ K+NL HL+ H
Sbjct: 5 SSGKPYKCPQCSYASAIKANLNVHLRKH 32
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 34.4 bits (78), Expect = 0.054
Identities = 14/93 (15%), Positives = 26/93 (27%), Gaps = 6/93 (6%)
Query: 15 EDSSDVTIVKQEVESTKLPSPAKSPAKSKAGSIVVKSLEHL------KDLKVTKKKTVYD 68
D S + + ++S G K + + +
Sbjct: 113 TDKSKAQVTYSDTGINNANELSRSGNVDNEGGSNQKPMSTRIAEATSAIVSKHPARVGLP 172
Query: 69 RRKNGPKPYQCAICPRGYYSDIGLQNHLWSHRK 101
+ YQC +C +S + L H+ SH
Sbjct: 173 PTASSGHGYQCHVCSAVLFSPLDLDAHVASHGL 205
Score = 32.9 bits (74), Expect = 0.18
Identities = 14/77 (18%), Positives = 25/77 (32%), Gaps = 8/77 (10%)
Query: 127 RKHWIDENGGGENEMETPTPKKIGIREKVNWKKTKITASNLLSYNNAMFSSGTRYQCPLC 186
R +D GG + + + SSG YQC +C
Sbjct: 135 RSGNVDNEGGSNQKPMSTRIAEATSAIVSKHPARVGLPPTA--------SSGHGYQCHVC 186
Query: 187 NKKINTKSNLRRHLQAH 203
+ + + +L H+ +H
Sbjct: 187 SAVLFSPLDLDAHVASH 203
Score = 31.0 bits (69), Expect = 0.60
Identities = 7/65 (10%), Positives = 20/65 (30%), Gaps = 3/65 (4%)
Query: 182 QCPLCNKKINTKSNLRRHLQAHKPKGKHTCEICFRIFKTEINLTRHLECH---DTVELSC 238
+ ++ + C +C + + ++L H+ H + L+
Sbjct: 154 IAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASHGLHGNMTLTS 213
Query: 239 PDCNR 243
+ R
Sbjct: 214 SEIQR 218
Score = 30.6 bits (68), Expect = 0.93
Identities = 12/96 (12%), Positives = 24/96 (25%), Gaps = 10/96 (10%)
Query: 201 QAHKPKGKHTCEICFRIFK---TEINLTRHLECHDTVELSCPDCNRVYPTNSTLRAHMIS 257
+ K K ++ + ++ P R+ S + + +
Sbjct: 108 KQAKDTDKSKAQVTYSDTGINNANELSRSGNVDNEGGSNQKPMSTRIAEATSAIVSKHPA 167
Query: 258 HSTERP-------HNCPHCEKTFKRNQDLKFHLNQH 286
P + C C DL H+ H
Sbjct: 168 RVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASH 203
Score = 30.2 bits (67), Expect = 1.3
Identities = 8/76 (10%), Positives = 17/76 (22%), Gaps = 7/76 (9%)
Query: 246 PTNSTLRAHMISHSTERPHN------CPHCEKTFKRNQDLKFHLNQHTGERPYKCPFCPR 299
N R+ + + ++ + Y+C C
Sbjct: 129 NANELSRSGNVDNEGGSNQKPMSTRIAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSA 188
Query: 300 TFASSGNCFSHRKRMH 315
S + +H H
Sbjct: 189 VLFSPLDLDAHV-ASH 203
Score = 29.8 bits (66), Expect = 1.7
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 237 SCPDCNRVYPTNSTLRAHMISHSTE 261
C C+ V + L AH+ SH
Sbjct: 182 QCHVCSAVLFSPLDLDAHVASHGLH 206
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 32
Score = 30.0 bits (67), Expect = 0.084
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 261 ERPHNC--PHCEKTFKRNQDLKFHLNQHT 287
+RP++C P C+K F RN DL H H
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQ 29
Score = 24.6 bits (53), Expect = 6.9
Identities = 8/26 (30%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 289 ERPYKCPF--CPRTFASSGNCFSHRK 312
+RPY C C + F + + H+K
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKK 26
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 29.4 bits (65), Expect = 0.12
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 256 ISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGER 290
S S+ + C +C K FK L+ HL HT E+
Sbjct: 2 SSGSSGKIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT-
interacting protein, ring domain, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 88
Score = 30.8 bits (70), Expect = 0.12
Identities = 15/65 (23%), Positives = 20/65 (30%), Gaps = 14/65 (21%)
Query: 210 TCEICFRIFKTEINLTRHLECHDTVELSCPDCNRVYPTNSTLRAHMISHSTERPHNCPHC 269
C IC F E + L C T+ C C + S+ CP C
Sbjct: 17 ECPICMESFTEEQLRPKLLHCGHTI---CRQC-----------LEKLLASSINGVRCPFC 62
Query: 270 EKTFK 274
K +
Sbjct: 63 SKITR 67
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 30
Score = 29.4 bits (66), Expect = 0.13
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 290 RPYKCPFCPRTFASSGNCFSHRKRMHEG 317
+ Y C C R F H +++H G
Sbjct: 1 KAYACGLCNRAFTRRDLLIRHAQKIHSG 28
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif,
transcription regulation, zinc-finger; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 47
Score = 29.4 bits (66), Expect = 0.14
Identities = 10/40 (25%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Query: 253 AHMISHSTERPHNCPH--CEKTFKRNQDLKFHLNQHTGER 290
+ ++ C C KTFKR +++ H+ H +R
Sbjct: 8 DKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
Score = 28.7 bits (64), Expect = 0.33
Identities = 8/26 (30%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 180 RYQCPL--CNKKINTKSNLRRHLQAH 203
++C C K + N+R H+Q H
Sbjct: 18 TFECLFPGCTKTFKRRYNIRSHIQTH 43
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA
motif, metal binding protein; NMR {Synthetic} SCOP:
g.37.1.3 PDB: 2l1o_A
Length = 39
Score = 28.9 bits (65), Expect = 0.19
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 74 PKPYQCAICPRGYYSDIGLQNHLWSHRK 101
P+ Y C+ C R + S L H+ HR+
Sbjct: 4 PRSYTCSFCKREFRSAQALGGHMNVHRR 31
Score = 27.8 bits (62), Expect = 0.47
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 262 RPHNCPHCEKTFKRNQDLKFHLNQHTGER 290
R + C C++ F+ Q L H+N H +R
Sbjct: 5 RSYTCSFCKREFRSAQALGGHMNVHRRDR 33
Score = 25.9 bits (57), Expect = 2.4
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 290 RPYKCPFCPRTFASS 304
R Y C FC R F S+
Sbjct: 5 RSYTCSFCKREFRSA 19
Score = 25.9 bits (57), Expect = 2.6
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 237 SCPDCNRVYPTNSTLRAHMISHSTER 262
+C C R + + L HM H +R
Sbjct: 8 TCSFCKREFRSAQALGGHMNVHRRDR 33
>1wir_A Protein arginine N-methyltransferase 3; C2H2 zinc finger domain,
PRMT3, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: g.37.1.5
Length = 121
Score = 30.7 bits (69), Expect = 0.22
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 288 GERPYKCPFCPRTFASSGNCFSHRKRMHE 316
G + C FC R FAS+ FSH K H+
Sbjct: 12 GRQHTPCLFCDRLFASAEETFSHCKLEHQ 40
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 37
Score = 28.2 bits (62), Expect = 0.40
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 257 SHSTERPHNCPHCEKTFKRNQ-DLKFHLNQHTG 288
S S+ R CP+C+ F +N DL+ H+ H G
Sbjct: 3 SGSSGRAMKCPYCDFYFMKNGSDLQRHIWAHEG 35
Score = 27.1 bits (59), Expect = 1.1
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 287 TGERPYKCPFCPRTFASSGNCFSHRKRMHEG 317
+ R KCP+C F +G+ HEG
Sbjct: 5 SSGRAMKCPYCDFYFMKNGSDLQRHIWAHEG 35
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 30.9 bits (69), Expect = 0.46
Identities = 6/42 (14%), Positives = 13/42 (30%)
Query: 249 STLRAHMISHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGER 290
S H E+ E+ +DL+ ++ +
Sbjct: 194 SQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLSVLRQ 235
Score = 29.4 bits (65), Expect = 1.6
Identities = 5/49 (10%), Positives = 16/49 (32%)
Query: 183 CPLCNKKINTKSNLRRHLQAHKPKGKHTCEICFRIFKTEINLTRHLECH 231
K++++ S H + + + E ++ +L +
Sbjct: 183 SEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLS 231
Score = 27.1 bits (59), Expect = 7.0
Identities = 4/27 (14%), Positives = 10/27 (37%)
Query: 180 RYQCPLCNKKINTKSNLRRHLQAHKPK 206
R Q + ++ +LR + +
Sbjct: 208 RLQREKSEQVLDNPEDLRGPIHLSVLR 234
>2ct5_A Zinc finger BED domain containing protein 1; DREF homolog, putative
C-like transposable element, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.6
Length = 73
Score = 28.7 bits (63), Expect = 0.52
Identities = 9/39 (23%), Positives = 15/39 (38%), Gaps = 3/39 (7%)
Query: 171 NNAMFSSGTRYQCPLCNKKI---NTKSNLRRHLQAHKPK 206
+ C +C +I SNL HL+ + P+
Sbjct: 20 AEGCILQWKKIYCRICMAQIAYSGNTSNLSYHLEKNHPE 58
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 27.9 bits (61), Expect = 0.55
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 257 SHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGE 289
S + + C C K F+ + L H H GE
Sbjct: 6 SGAAKTTSECQECGKIFRHSSLLIEHQALHAGE 38
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
transcription; NMR {Homo sapiens}
Length = 29
Score = 27.0 bits (59), Expect = 0.83
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 262 RPHNCPHCEKTFKRNQDLKFHLNQHTGER 290
+P C C K F + L H+ QHTGE+
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.7 bits (66), Expect = 0.83
Identities = 9/61 (14%), Positives = 19/61 (31%), Gaps = 14/61 (22%)
Query: 119 REREDGEKRKHW-------IDENGGGENEMETPTPKKIGIREKVNW------KKTKITAS 165
R ++ E + W + E ME ++ ++ W + K +
Sbjct: 79 RLTQEPESIRKWREEQRKRLQELDAASKVMEQEW-REKAKKDLEEWNQRQSEQVEKNKIN 137
Query: 166 N 166
N
Sbjct: 138 N 138
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1
Length = 33
Score = 26.4 bits (58), Expect = 1.3
Identities = 8/29 (27%), Positives = 16/29 (55%)
Query: 180 RYQCPLCNKKINTKSNLRRHLQAHKPKGK 208
++ CP C K+ +L +H+ H+ G+
Sbjct: 2 KFACPECPKRFMRSDHLSKHITLHELLGE 30
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation,
transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus}
PDB: 1tbn_A 1tbo_A 2e73_A
Length = 674
Score = 30.0 bits (67), Expect = 1.3
Identities = 23/113 (20%), Positives = 36/113 (31%), Gaps = 17/113 (15%)
Query: 211 CEICFRIFKTEINLTRHLECHDTVELSCPDCNRVYPTNSTLRAHMI-SHSTERPHNCPHC 269
C++C + H CH+ V SCP ++ ++ H H+ P C HC
Sbjct: 68 CQVC--------SFVVHKRCHEFVTFSCPGADKGPASDDPRSKHKFKIHTYSSPTFCDHC 119
Query: 270 EKT--FKRNQDLKFH---LNQHTG---ERPYKCPFCPRTFASSGNCFSHRKRM 314
+Q +K +N H P C +H R
Sbjct: 120 GSLLYGLIHQGMKCDTCMMNVHKRCVMNVPSLCGTDHTERRGRIYIQAHIDRE 172
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 26.7 bits (58), Expect = 1.5
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 257 SHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGER 290
S S E+ H C C + F + L H H G++
Sbjct: 6 SGSREKSHQCRECGEIFFQYVSLIEHQVLHMGQK 39
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 26.7 bits (58), Expect = 1.5
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 257 SHSTERPHNCPHCEKTFKRNQDLKFHLNQHT 287
S E+ C CEKTF ++ L H HT
Sbjct: 6 SGQKEKCFKCNKCEKTFSCSKYLTQHERIHT 36
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 26.4 bits (57), Expect = 1.6
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 257 SHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGER 290
S S+ +P C CE + +LK H+N+H+ E+
Sbjct: 3 SGSSGKPFKCSLCEYATRSKSNLKAHMNRHSTEK 36
Score = 26.0 bits (56), Expect = 2.2
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 176 SSGTRYQCPLCNKKINTKSNLRRHLQAH 203
SSG ++C LC +KSNL+ H+ H
Sbjct: 5 SSGKPFKCSLCEYATRSKSNLKAHMNRH 32
>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain
associated with ring and TRAF domains protein 1,
malignant 62; NMR {Homo sapiens}
Length = 76
Score = 27.2 bits (60), Expect = 1.7
Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Query: 266 CPH-CEKTFKRNQDLKFHLNQHTGERPYKCPFCPRTFA 302
CP+ C R DL HL +R KC FC F+
Sbjct: 19 CPNRCPMKLSRR-DLPAHLQHDCPKRRLKCEFCGCDFS 55
>3iyl_X VP3; non-enveloped virus, membrane penetration protein, autocleav
myristol group, icosahedral virus; HET: MYR; 3.30A
{Grass carp reovirus} PDB: 3k1q_C 3k1q_B
Length = 1214
Score = 29.4 bits (65), Expect = 1.9
Identities = 17/69 (24%), Positives = 24/69 (34%), Gaps = 4/69 (5%)
Query: 133 ENGGGENEMETPTPKKIGIREKVNWKKTKITASNLLSYNNAMFSSGTRYQCPLCNKKINT 192
N G T I N K S+ S + + Y C +CN + +T
Sbjct: 73 NNDGDIITRPTSDS----IAAVANATKPAAVVSDPQSMKVTPIVNPSSYVCNVCNARFST 128
Query: 193 KSNLRRHLQ 201
S L HL+
Sbjct: 129 MSALSEHLR 137
Score = 28.6 bits (63), Expect = 3.2
Identities = 15/95 (15%), Positives = 32/95 (33%), Gaps = 9/95 (9%)
Query: 14 KEDSSDVTIVKQEVESTKLPSPAKSPAKSKAGSIVVKSLEHLKDLKVTKKKTVYDRRKNG 73
DS+ + V + + P+ A + A V+ +++
Sbjct: 63 VGDSAPSSSVNNDGDIITRPTSDSIAAVANATKPAAV---------VSDPQSMKVTPIVN 113
Query: 74 PKPYQCAICPRGYYSDIGLQNHLWSHRKILKNSNV 108
P Y C +C + + L HL S + ++ +
Sbjct: 114 PSSYVCNVCNARFSTMSALSEHLRSDHRDDASTLL 148
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 28.5 bits (63), Expect = 2.2
Identities = 10/54 (18%), Positives = 20/54 (37%), Gaps = 12/54 (22%)
Query: 208 KHTCEICFRIFKTEINLTRHLECHDTVELSCPDCNRVYPTNSTLRAHMISHSTE 261
TC C +++ +I +E ++ C C V L ++ +E
Sbjct: 21 VLTCPEC-KVYPPKI-----VERFSEGDVVCALCGLV------LSDKLVDTRSE 62
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 37
Score = 26.0 bits (56), Expect = 2.2
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 176 SSGTRYQCPLCNKKINTKSNLRRHLQAHKPK 206
SSG Y CP+C K + ++ H++ + P+
Sbjct: 5 SSGRSYSCPVCEKSFSEDRLIKSHIKTNHPE 35
Score = 25.6 bits (55), Expect = 3.7
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 257 SHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGE 289
S S+ R ++CP CEK+F ++ +K H+ + E
Sbjct: 3 SGSSGRSYSCPVCEKSFSEDRLIKSHIKTNHPE 35
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 28
Score = 25.9 bits (56), Expect = 2.4
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 262 RPHNCPHCEKTFKRNQDLKFHLNQHTG 288
RP++C C K F ++ H HTG
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVHTG 28
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 25.9 bits (56), Expect = 2.4
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 257 SHSTERPHNCPHCEKTFKRNQDLKFHLNQHTGE 289
S S+ + H C C K FK LK H HT +
Sbjct: 3 SGSSGKTHLCDMCGKKFKSKGTLKSHKLLHTAD 35
Score = 25.2 bits (54), Expect = 5.3
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 176 SSGTRYQCPLCNKKINTKSNLRRHLQAHKPKG 207
SSG + C +C KK +K L+ H H G
Sbjct: 5 SSGKTHLCDMCGKKFKSKGTLKSHKLLHTADG 36
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Length = 29
Score = 25.2 bits (55), Expect = 3.1
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 180 RYQCPLCNKKINTKSNLRRHLQAHKPK 206
++ CP C K+ +L H+ H+ K
Sbjct: 2 KFACPECPKRFMRSDHLTLHILLHENK 28
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS),
leukemia, transcription regulation; NMR {Homo sapiens}
SCOP: g.44.1.1
Length = 56
Score = 26.2 bits (58), Expect = 3.3
Identities = 10/41 (24%), Positives = 14/41 (34%), Gaps = 4/41 (9%)
Query: 210 TCEICFRIFKTEINLT-RH---LECHDTVELSCPDCNRVYP 246
C+ C K L H C + + CP C +P
Sbjct: 8 RCQQCQAEAKCPKLLPCLHTLCSGCLEASGMQCPICQAPWP 48
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 35
Score = 25.2 bits (54), Expect = 3.9
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 72 NGPKPYQCAICPRGYYSDIGLQNHL 96
+G Y CA+C + + S I L++H+
Sbjct: 3 SGSSGYVCALCLKKFVSSIRLRSHI 27
Score = 25.2 bits (54), Expect = 3.9
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 287 TGERPYKCPFCPRTFASSGNCFSHRKRMHE 316
+G Y C C + F SS SH + +H
Sbjct: 3 SGSSGYVCALCLKKFVSSIRLRSHIREVHG 32
>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin
remodeling, DNA binding protein/DNA complex; HET: DNA;
NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB:
1yuj_A*
Length = 54
Score = 26.0 bits (56), Expect = 3.9
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 183 CPLCNKKINTKSNLRRHLQ 201
CP+C I NLRRHL+
Sbjct: 27 CPICYAVIRQSRNLRRHLE 45
>3sp4_A Aprataxin-like protein; HIT domain, zinc finger, DNA-binding
protein, DNA deadenylas hydrolase; 1.80A
{Schizosaccharomyces pombe} PDB: 3spd_A* 3spl_A* 3szq_A*
Length = 204
Score = 27.7 bits (61), Expect = 4.7
Identities = 9/27 (33%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 261 ERPHNCPHCEKTFKRN-QDLKFHLNQH 286
+ C C +TF R+ LK HL +
Sbjct: 167 QEDLKCWRCGETFGRHFTKLKAHLQEE 193
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 25.1 bits (54), Expect = 5.1
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
Query: 176 SSGTR---YQCPLCNKKINTKSNLRRHLQAHKPK 206
SSG+ Y C +C +K + + RH+ H K
Sbjct: 2 SSGSSGLLYDCHICERKFKNELDRDRHMLVHGDK 35
Score = 24.7 bits (53), Expect = 7.0
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 209 HTCEICFRIFKTEINLTRHLECH 231
+ C IC R FK E++ RH+ H
Sbjct: 10 YDCHICERKFKNELDRDRHMLVH 32
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4,
UIP4, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: g.44.1.1
Length = 94
Score = 26.4 bits (58), Expect = 5.1
Identities = 13/64 (20%), Positives = 20/64 (31%), Gaps = 10/64 (15%)
Query: 207 GKHTCEICFRIFKTEINLTRHLECHDTVELSCPDCNRVYPTNSTLRAHMISHSTERPHNC 266
G C++C + E +T +C C C + Y I E +C
Sbjct: 4 GSSGCKLCLGEYPVE-QMTTIAQCQCI---FCTLCLKQYVELL------IKEGLETAISC 53
Query: 267 PHCE 270
P
Sbjct: 54 PDAA 57
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR
{Xenopus laevis} SCOP: g.37.1.1
Length = 27
Score = 24.7 bits (53), Expect = 5.1
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 181 YQCPLCNKKINTKSNLRRHLQAHK 204
Y+C LC + KS L RH + HK
Sbjct: 2 YKCGLCERSFVEKSALSRHQRVHK 25
>3ncv_A DNA mismatch repair protein MUTL; endonuclease, dimer, hydrolase;
HET: DNA; 2.40A {Neisseria gonorrhoeae}
Length = 220
Score = 27.2 bits (61), Expect = 6.6
Identities = 7/30 (23%), Positives = 9/30 (30%), Gaps = 12/30 (40%)
Query: 260 TERPHNCPH------------CEKTFKRNQ 277
T R + C H + F R Q
Sbjct: 191 TPRSNQCNHGRPTWVKLTLKELDTLFLRGQ 220
>2d87_A Smoothelin splice isoform L2; all alpha, calponin homology domain,
actin binding, structural genomics, NPPSFA; NMR {Homo
sapiens} PDB: 2jv9_A 2k3s_A
Length = 128
Score = 26.6 bits (59), Expect = 7.2
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 208 KHTCEICFRIFKTEINLTRHLECHDTVELSCPD 240
+ E+ F +T + + L+ D V L PD
Sbjct: 64 RQNFEVAFSSAETHADCPQLLDTEDMVRLREPD 96
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase,
ubiquitylation, sumoylation, zinc-FI metal binding
protein; 1.80A {Rattus norvegicus}
Length = 71
Score = 25.6 bits (56), Expect = 7.2
Identities = 16/84 (19%), Positives = 27/84 (32%), Gaps = 22/84 (26%)
Query: 204 KPKGKHTCEICFRIFKTEINLTRH---LEC-HDTVELSCPDCNRVYPTNSTLRAHMISHS 259
+P G +C IC + + R EC H + C C + S
Sbjct: 6 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGH----VFCSQC--------------LRDS 47
Query: 260 TERPHNCPHCEKTFKRNQDLKFHL 283
+ + CP C K + ++
Sbjct: 48 LKNANTCPTCRKKINHKRYHPIYI 71
>1xi6_A Extragenic suppressor; structural genomics, southeast
collaboratory for structural genomics hyperthermophIle,
PSI; 2.80A {Pyrococcus furiosus} SCOP: e.7.1.1
Length = 262
Score = 27.2 bits (61), Expect = 7.7
Identities = 3/34 (8%), Positives = 10/34 (29%), Gaps = 6/34 (17%)
Query: 43 KAGSIVVKSLEHLKDLKVTKKK------TVYDRR 70
+ ++ + K+ K + D+
Sbjct: 24 DFETTIMPFFGNPDGGKLVKISPSGDETKLVDKL 57
>2joe_A Hypothetical lipoprotein YEHR; six antiparallel beta strands,
alpha + beta sandwich, structural genomics, PSI-2,
protein structure initiative; NMR {Escherichia coli}
SCOP: d.371.1.1
Length = 139
Score = 26.5 bits (58), Expect = 8.9
Identities = 12/67 (17%), Positives = 26/67 (38%), Gaps = 4/67 (5%)
Query: 5 KENSLLFLYKEDSSDVTIVKQEVESTKLPSPAKSPAKSKAGSIVVKSLEHLKDLKVTKKK 64
E ++ ++YK D ++KQ E+ + + K A + K++ ++K
Sbjct: 17 TEIAITYVYKGD----KVLKQSSETKIQFASIGATTKEDAAKTLEPLSAKYKNIAGVEEK 72
Query: 65 TVYDRRK 71
Y
Sbjct: 73 LTYTDTY 79
>3kdg_A DNA mismatch repair protein MUTL; endonuclease, DNA damage, DNA
repair, hydrolase; HET: DNA; 2.00A {Bacillus subtilis}
PDB: 3gab_A* 3kdk_A*
Length = 197
Score = 26.7 bits (60), Expect = 9.6
Identities = 11/30 (36%), Positives = 11/30 (36%), Gaps = 12/30 (40%)
Query: 258 HSTERPHNCPH------------CEKTFKR 275
ST P CPH EK FKR
Sbjct: 166 RSTSDPFTCPHGRPIIIHHSTYEMEKMFKR 195
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.131 0.405
Gapped
Lambda K H
0.267 0.0436 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,894,922
Number of extensions: 280757
Number of successful extensions: 2207
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1946
Number of HSP's successfully gapped: 724
Length of query: 337
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 243
Effective length of database: 4,077,219
Effective search space: 990764217
Effective search space used: 990764217
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.5 bits)