BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13797
(339 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4E4H|A Chain A, Crystal Structure Of Histone Demethylase No66
pdb|4E4H|B Chain B, Crystal Structure Of Histone Demethylase No66
pdb|4E4H|C Chain C, Crystal Structure Of Histone Demethylase No66
pdb|4E4H|D Chain D, Crystal Structure Of Histone Demethylase No66
Length = 463
Score = 306 bits (784), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 147/337 (43%), Positives = 208/337 (61%), Gaps = 2/337 (0%)
Query: 3 WEKEPLYISRKQKNYYNNLITSKKIDDILRDNVIEFKKNIDITLYEDGQRQTMDVEGRAL 62
WE+E + + R+ YY L ++ +D +LR+ ++F +++D Y +G+R+T++ GRAL
Sbjct: 45 WEREAVLVRRQDHTYYQGLFSTADLDSMLRNEEVQFGQHLDAARYINGRRETLNPPGRAL 104
Query: 63 PQIVWDHYREGCSIRFLNPQTYIKPLQQLNASLQELFGCFVGANTYQTPPTAQGFAPHYD 122
P W Y+ GCS+R L PQ + + Q A LQE FG G+N Y TPP +QGFAPHYD
Sbjct: 105 PAAAWSLYQAGCSLRLLCPQAFSTTVWQFLAVLQEQFGSMAGSNVYLTPPNSQGFAPHYD 164
Query: 123 DIEAFILQLEGKKKWKVYLPRMVDEYLPRYSSPNFSQEEIGTPILTVTLEPGDLLYLPRG 182
DIEAF+LQLEG+K W+VY PR E L SSPNFSQ+++G P+L LEPGDLLY PRG
Sbjct: 165 DIEAFVLQLEGRKLWRVYRPRAPTEELALTSSPNFSQDDLGEPVLQTVLEPGDLLYFPRG 224
Query: 183 YIHQASTVTNEHSLHVTISVYQKTAWIDLLEKAMPKALQAAGATDLEFRRGLPIGYLRYA 242
+IHQA HSLH+T+S YQ+ W D LE +P A+QAA ++EFRRGLP ++ Y
Sbjct: 225 FIHQAECQDGVHSLHLTLSTYQRNTWGDFLEAILPLAVQAAMEENVEFRRGLPRDFMDYM 284
Query: 243 GLARGKPVDIQADRLAMKENLKDLLAKLVEYVDLDDGVDEMGKQLMHDALPPVLSPEELQ 302
G D + R A E ++ L+A+L + +D D+ K +HD+LPPVL+ E
Sbjct: 285 GAQHSDSKDPR--RTAFMEKVRVLVARLGHFAPVDAVADQRAKDFIHDSLPPVLTDRERA 342
Query: 303 CSVFENGLRMSQTGEVYNATQITKDTKVRLVRANAVR 339
SV+ +R V Q+T +T+V +++ R
Sbjct: 343 LSVYGLPIRWEAGEPVNVGAQLTTETEVHMLQDGIAR 379
>pdb|4DIQ|A Chain A, Crystal Structure Of Human No66
pdb|4DIQ|B Chain B, Crystal Structure Of Human No66
Length = 489
Score = 306 bits (783), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 147/337 (43%), Positives = 208/337 (61%), Gaps = 2/337 (0%)
Query: 3 WEKEPLYISRKQKNYYNNLITSKKIDDILRDNVIEFKKNIDITLYEDGQRQTMDVEGRAL 62
WE+E + + R+ YY L ++ +D +LR+ ++F +++D Y +G+R+T++ GRAL
Sbjct: 64 WEREAVLVRRQDHTYYQGLFSTADLDSMLRNEEVQFGQHLDAARYINGRRETLNPPGRAL 123
Query: 63 PQIVWDHYREGCSIRFLNPQTYIKPLQQLNASLQELFGCFVGANTYQTPPTAQGFAPHYD 122
P W Y+ GCS+R L PQ + + Q A LQE FG G+N Y TPP +QGFAPHYD
Sbjct: 124 PAAAWSLYQAGCSLRLLCPQAFSTTVWQFLAVLQEQFGSMAGSNVYLTPPNSQGFAPHYD 183
Query: 123 DIEAFILQLEGKKKWKVYLPRMVDEYLPRYSSPNFSQEEIGTPILTVTLEPGDLLYLPRG 182
DIEAF+LQLEG+K W+VY PR E L SSPNFSQ+++G P+L LEPGDLLY PRG
Sbjct: 184 DIEAFVLQLEGRKLWRVYRPRAPTEELALTSSPNFSQDDLGEPVLQTVLEPGDLLYFPRG 243
Query: 183 YIHQASTVTNEHSLHVTISVYQKTAWIDLLEKAMPKALQAAGATDLEFRRGLPIGYLRYA 242
+IHQA HSLH+T+S YQ+ W D LE +P A+QAA ++EFRRGLP ++ Y
Sbjct: 244 FIHQAECQDGVHSLHLTLSTYQRNTWGDFLEAILPLAVQAAMEENVEFRRGLPRDFMDYM 303
Query: 243 GLARGKPVDIQADRLAMKENLKDLLAKLVEYVDLDDGVDEMGKQLMHDALPPVLSPEELQ 302
G D + R A E ++ L+A+L + +D D+ K +HD+LPPVL+ E
Sbjct: 304 GAQHSDSKDPR--RTAFMEKVRVLVARLGHFAPVDAVADQRAKDFIHDSLPPVLTDRERA 361
Query: 303 CSVFENGLRMSQTGEVYNATQITKDTKVRLVRANAVR 339
SV+ +R V Q+T +T+V +++ R
Sbjct: 362 LSVYGLPIRWEAGEPVNVGAQLTTETEVHMLQDGIAR 398
>pdb|2XDV|A Chain A, Crystal Structure Of The Catalytic Domain Of Flj14393
Length = 442
Score = 155 bits (391), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 105/312 (33%), Positives = 157/312 (50%), Gaps = 45/312 (14%)
Query: 1 DHWEKEPLYISRKQ---KNYYNNLITSKKIDDI--LRDNVIEFKKNIDITLYEDGQRQTM 55
+ WE++PL I R YY +L K+ D+ L + + +++++ +G+++ +
Sbjct: 34 EFWEQKPLLIQRDDPALATYYGSLF---KLTDLKSLCSRGMYYGRDVNVCRCVNGKKKVL 90
Query: 56 DVEGRA-LPQIVWDHYREGCSIRFLNPQTYIKPLQQLNASLQELFGCFVGANTYQTPPTA 114
+ +G+A Q+ D ++ +I+F PQ + L ++ L+ FG VG+N Y TP +
Sbjct: 91 NKDGKAHFLQLRKDFDQKRATIQFHQPQRFKDELWRIQEKLECYFGSLVGSNVYITPAGS 150
Query: 115 QGFAPHYDDIEAFILQLEGKKKWKVYLPRMVDEYLPRYSSPNFSQEEIGTPILTVTLEPG 174
QG PHYDD+E FILQLEG+K W++Y P + L R S ++E IG P+ L+PG
Sbjct: 151 QGLPPHYDDVEVFILQLEGEKHWRLYHPTVP---LAREYSVE-AEERIGRPVHEFMLKPG 206
Query: 175 DLLYLPRGYIHQASTVTN-EHSLHVTISVYQKTAWIDLLEKAMPKALQAAGATDLEFRRG 233
DLLY PRG IHQA T HS HVTIS YQ +W D L + + D+E R G
Sbjct: 207 DLLYFPRGTIHQADTPAGLAHSTHVTISTYQNNSWGDFLLDTISGLVFDTAKEDVELRTG 266
Query: 234 LP-----------IGYLRYAGLARGKPVDIQADRLAMKENLKDLLAKLVEYVDLDDGVDE 282
+P + R +G R ADRL E K+LL+ +
Sbjct: 267 IPRQLLLQVESTTVATRRLSGFLR-----TLADRL---EGTKELLSS------------D 306
Query: 283 MGKQLMHDALPP 294
M K + LPP
Sbjct: 307 MKKDFIMHRLPP 318
>pdb|1VRB|A Chain A, Crystal Structure Of Putative Asparaginyl Hydroxylase
(2636534) From Bacillus Subtilis At 2.60 A Resolution
pdb|1VRB|B Chain B, Crystal Structure Of Putative Asparaginyl Hydroxylase
(2636534) From Bacillus Subtilis At 2.60 A Resolution
pdb|1VRB|C Chain C, Crystal Structure Of Putative Asparaginyl Hydroxylase
(2636534) From Bacillus Subtilis At 2.60 A Resolution
pdb|1VRB|D Chain D, Crystal Structure Of Putative Asparaginyl Hydroxylase
(2636534) From Bacillus Subtilis At 2.60 A Resolution
Length = 342
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 52/224 (23%), Positives = 96/224 (42%), Gaps = 26/224 (11%)
Query: 1 DHWEKEPLYISRKQKNYYNNLITSKKIDDILRDNVIEFKKNIDITLYEDGQRQTMDVEGR 60
++W +PL ++R + + ++ +K+ + +NV+ N + + ++ + R
Sbjct: 36 EYWPVKPL-VARGEVERFTSIPGFEKVRTL--ENVLAIYNNPVXVVGDAVIEESEGITDR 92
Query: 61 AL--PQIVWDHYREGCSIRFLNPQTYI----KPLQQLNASLQELFGCFVGANTYQTPPTA 114
L P + Y +G ++ F +I + +++L A L+ G A Y
Sbjct: 93 FLVSPAEALEWYEKGAALEFDFTDLFIPQVRRWIEKLKAELRLPAGTSSKAIVYAAK-NG 151
Query: 115 QGFAPHYDDIEAFILQLEGKKKWKVYLPRMVDEYLPRY--SSPNFSQEEI-----GTP-- 165
GF H+D I Q++G+K WK+ V Y S + +++ G P
Sbjct: 152 GGFKAHFDAYTNLIFQIQGEKTWKLAKNENVSNPXQHYDLSEAPYYPDDLQSYWKGDPPK 211
Query: 166 -----ILTVTLEPGDLLYLPRGYIHQASTVTNEHSLHVTISVYQ 204
V L PG LYLPRG H ST +++ +L + I+ Q
Sbjct: 212 EDLPDAEIVNLTPGTXLYLPRGLWH--STKSDQATLALNITFGQ 253
>pdb|2XUM|A Chain A, Factor Inhibiting Hif (Fih) Q239h Mutant In Complex With
Zn(Ii), Nog And Asp-Substrate Peptide (20-Mer)
Length = 349
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 64/154 (41%), Gaps = 36/154 (23%)
Query: 73 GCSIRFLNPQTYIKPLQQLNASLQELFGCFVGANTYQTPPTAQGFAPHYDDIEAFILQLE 132
G + ++N Q + QL ++L +G TP HYD+ + F Q++
Sbjct: 164 GFNWNWINKQQGKRGWGQLTSNL-----LLIGMEGNVTPA-------HYDEQQNFFAQIK 211
Query: 133 GKKKWKVYLPRMVDEYLP--------RYSS-----------PNFSQEEIGTPILTVTLEP 173
G K+ ++ P + P R+S PNF Q +G + P
Sbjct: 212 GYKRCILFPPDQFECLYPYPVHHPCDRHSQVDFDNPDYERFPNF-QNVVG---YETVVGP 267
Query: 174 GDLLYLPRGYIHQASTVTNEHSLHVTISVYQKTA 207
GD+LY+P + H ++ N + +T++ + K A
Sbjct: 268 GDVLYIPMYWWHHIESLLN-GGITITVNFWYKGA 300
>pdb|1IZ3|A Chain A, Dimeric Structure Of Fih (Factor Inhibiting Hif)
Length = 349
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 63/154 (40%), Gaps = 36/154 (23%)
Query: 73 GCSIRFLNPQTYIKPLQQLNASLQELFGCFVGANTYQTPPTAQGFAPHYDDIEAFILQLE 132
G + ++N Q + QL ++L +G TP HYD+ + F Q++
Sbjct: 164 GFNWNWINKQQGKRGWGQLTSNL-----LLIGXEGNVTPA-------HYDEQQNFFAQIK 211
Query: 133 GKKKWKVYLP------------------RMVDEYLPRYSS-PNFSQEEIGTPILTVTLEP 173
G K+ ++ P VD P Y PNF Q +G + P
Sbjct: 212 GYKRCILFPPDQFECLYPYPVHHPCDRQSQVDFDNPDYERFPNF-QNVVG---YETVVGP 267
Query: 174 GDLLYLPRGYIHQASTVTNEHSLHVTISVYQKTA 207
GD+LY+P + H ++ N + +T++ + K A
Sbjct: 268 GDVLYIPXYWWHHIESLLN-GGITITVNFWYKGA 300
>pdb|2Y0I|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Tankyrase-2
(Tnks2) Fragment Peptide (21-Mer)
pdb|2YC0|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With
R-2-Hydroxyglutarate
pdb|2YDE|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With
S-2-Hydroxyglutarate
pdb|4AI8|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Daminozide
Length = 352
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 63/154 (40%), Gaps = 36/154 (23%)
Query: 73 GCSIRFLNPQTYIKPLQQLNASLQELFGCFVGANTYQTPPTAQGFAPHYDDIEAFILQLE 132
G + ++N Q + QL ++L +G TP HYD+ + F Q++
Sbjct: 167 GFNWNWINKQQGKRGWGQLTSNL-----LLIGMEGNVTPA-------HYDEQQNFFAQIK 214
Query: 133 GKKKWKVYLP------------------RMVDEYLPRYSS-PNFSQEEIGTPILTVTLEP 173
G K+ ++ P VD P Y PNF Q +G + P
Sbjct: 215 GYKRCILFPPDQFECLYPYPVHHPCDRQSQVDFDNPDYERFPNF-QNVVG---YETVVGP 270
Query: 174 GDLLYLPRGYIHQASTVTNEHSLHVTISVYQKTA 207
GD+LY+P + H ++ N + +T++ + K A
Sbjct: 271 GDVLYIPMYWWHHIESLLN-GGITITVNFWYKGA 303
>pdb|1MZE|A Chain A, Human Factor Inhibiting Hif (Fih1)
pdb|1MZF|A Chain A, Human Factor Inhibiting Hif (Fih1) In Complex With
2-Oxoglutarate
Length = 351
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 63/154 (40%), Gaps = 36/154 (23%)
Query: 73 GCSIRFLNPQTYIKPLQQLNASLQELFGCFVGANTYQTPPTAQGFAPHYDDIEAFILQLE 132
G + ++N Q + QL ++L +G TP HYD+ + F Q++
Sbjct: 166 GFNWNWINKQQGKRGWGQLTSNL-----LLIGMEGNVTPA-------HYDEQQNFFAQIK 213
Query: 133 GKKKWKVYLP------------------RMVDEYLPRYSS-PNFSQEEIGTPILTVTLEP 173
G K+ ++ P VD P Y PNF Q +G + P
Sbjct: 214 GYKRCILFPPDQFECLYPYPVHHPCDRQSQVDFDNPDYERFPNF-QNVVG---YETVVGP 269
Query: 174 GDLLYLPRGYIHQASTVTNEHSLHVTISVYQKTA 207
GD+LY+P + H ++ N + +T++ + K A
Sbjct: 270 GDVLYIPMYWWHHIESLLN-GGITITVNFWYKGA 302
>pdb|3KCX|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Clioquinol
pdb|3KCY|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With
8-Hydroxyquino
Length = 335
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 63/154 (40%), Gaps = 36/154 (23%)
Query: 73 GCSIRFLNPQTYIKPLQQLNASLQELFGCFVGANTYQTPPTAQGFAPHYDDIEAFILQLE 132
G + ++N Q + QL ++L +G TP HYD+ + F Q++
Sbjct: 150 GFNWNWINKQQGKRGWGQLTSNL-----LLIGMEGNVTPA-------HYDEQQNFFAQIK 197
Query: 133 GKKKWKVYLP------------------RMVDEYLPRYSS-PNFSQEEIGTPILTVTLEP 173
G K+ ++ P VD P Y PNF Q +G + P
Sbjct: 198 GYKRCILFPPDQFECLYPYPVHHPCDRQSQVDFDNPDYERFPNF-QNVVG---YETVVGP 253
Query: 174 GDLLYLPRGYIHQASTVTNEHSLHVTISVYQKTA 207
GD+LY+P + H ++ N + +T++ + K A
Sbjct: 254 GDVLYIPMYWWHHIESLLN-GGITITVNFWYKGA 286
>pdb|1H2K|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Hif-1 Alpha
Fragment Peptide
pdb|1H2L|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Hif-1 Alpha
Fragment Peptide
pdb|1H2M|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Hif-1 Alpha
Fragment Peptide
pdb|1H2N|A Chain A, Factor Inhibiting Hif-1 Alpha
pdb|1YCI|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With
N-(Carboxycarbonyl)-D- Phenylalanine
pdb|2CGN|A Chain A, Factor Inhibiting Hif-1 Alpha With Succinate
pdb|2CGO|A Chain A, Factor Inhibiting Hif-1 Alpha With Fumarate
pdb|2W0X|A Chain A, Factor Inhibiting Hif-1 Alpha With Pyridine 2,4
Dicarboxylic Acid
pdb|2WA3|A Chain A, Factor Inhibiting Hif-1 Alpha With 2-(3-Hydroxyphenyl)-2-
Oxoacetic Acid
pdb|2WA4|A Chain A, Factor Inhibiting Hif-1 Alpha With N,3-Dihydroxybenzamide
pdb|3P3N|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Notch 1
Fragment Mouse Notch (1930-1949) Peptide
pdb|3P3P|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Notch 1
Fragment Mouse Notch (1997-2016) Peptide
pdb|3OD4|A Chain A, Crystal Structure Of Factor Inhibiting Hif-1 Alpha
Complexed With Inhibitor
pdb|4B7E|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Consensus
Ankyrin Repeat Domain-leu Peptide (20-mer)
pdb|4B7K|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Consensus
Ankyrin Repeat Domain-ser Peptide (20-mer)
Length = 349
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 63/154 (40%), Gaps = 36/154 (23%)
Query: 73 GCSIRFLNPQTYIKPLQQLNASLQELFGCFVGANTYQTPPTAQGFAPHYDDIEAFILQLE 132
G + ++N Q + QL ++L +G TP HYD+ + F Q++
Sbjct: 164 GFNWNWINKQQGKRGWGQLTSNL-----LLIGMEGNVTPA-------HYDEQQNFFAQIK 211
Query: 133 GKKKWKVYLP------------------RMVDEYLPRYSS-PNFSQEEIGTPILTVTLEP 173
G K+ ++ P VD P Y PNF Q +G + P
Sbjct: 212 GYKRCILFPPDQFECLYPYPVHHPCDRQSQVDFDNPDYERFPNF-QNVVG---YETVVGP 267
Query: 174 GDLLYLPRGYIHQASTVTNEHSLHVTISVYQKTA 207
GD+LY+P + H ++ N + +T++ + K A
Sbjct: 268 GDVLYIPMYWWHHIESLLN-GGITITVNFWYKGA 300
>pdb|2FJU|B Chain B, Activated Rac1 Bound To Its Effector Phospholipase C Beta
2
pdb|2ZKM|X Chain X, Crystal Structure Of Phospholipase C Beta 2
Length = 799
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 10/95 (10%)
Query: 9 YISRKQKNYYNNLITSKKIDDILRDNVIEF---KKNIDITLYEDGQRQTMDVEGRALPQI 65
+ ++K ++Y + T K D+L ++F K +Y G R MD +PQ+
Sbjct: 559 FSAQKNRSYVISSFTELKAYDLLSKASVQFVDYNKRQMSRIYPKGTR--MD-SSNYMPQM 615
Query: 66 VWDHYREGCSIRFLNPQTYIKPLQQLNASLQELFG 100
W+ GC + LN QT P+QQ N ++ E G
Sbjct: 616 FWN---AGCQMVALNFQTMDLPMQQ-NMAVFEFNG 646
>pdb|4GJY|A Chain A, Jmjd5 In Complex With N-Oxalylglycine
Length = 235
Score = 32.0 bits (71), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 14/80 (17%)
Query: 120 HYDDIEAFILQLEGKKKWKVYLPRMVDEYLPRYSS--PNFSQEEI------------GTP 165
H D + F++Q+ G+K ++Y P+ P + N SQ ++ P
Sbjct: 140 HQDPQQNFLVQVXGRKYIRLYSPQESGALYPHDTHLLHNTSQVDVENPDLEKFPKFAKAP 199
Query: 166 ILTVTLEPGDLLYLPRGYIH 185
L+ L PG++L++P Y H
Sbjct: 200 FLSCILSPGEILFIPVKYWH 219
>pdb|4GJZ|A Chain A, Jmjd5 In Complex With 2-Oxoglutarate
Length = 235
Score = 31.6 bits (70), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 14/80 (17%)
Query: 120 HYDDIEAFILQLEGKKKWKVYLPRMVDEYLPRYSS--PNFSQEEI------------GTP 165
H D + F++Q+ G+K ++Y P+ P + N SQ ++ P
Sbjct: 140 HQDPQQNFLVQVMGRKYIRLYSPQESGALYPHDTHLLHNTSQVDVENPDLEKFPKFAKAP 199
Query: 166 ILTVTLEPGDLLYLPRGYIH 185
L+ L PG++L++P Y H
Sbjct: 200 FLSCILSPGEILFIPVKYWH 219
>pdb|4AAP|A Chain A, Crystal Structure Of Jmjd5 Domain Of Human Lysine-Specific
Demethylase 8 (Kdm8) In Complex With N-Oxalylglycine
(Nog)
pdb|4AAP|B Chain B, Crystal Structure Of Jmjd5 Domain Of Human Lysine-Specific
Demethylase 8 (Kdm8) In Complex With N-Oxalylglycine
(Nog)
Length = 239
Score = 31.6 bits (70), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 14/80 (17%)
Query: 120 HYDDIEAFILQLEGKKKWKVYLPRMVDEYLPRYSS--PNFSQEEI------------GTP 165
H D + F++Q+ G+K ++Y P+ P + N SQ ++ P
Sbjct: 144 HQDPQQNFLVQVMGRKYIRLYSPQESGALYPHDTHLLHNTSQVDVENPDLEKFPKFAKAP 203
Query: 166 ILTVTLEPGDLLYLPRGYIH 185
L+ L PG++L++P Y H
Sbjct: 204 FLSCILSPGEILFIPVKYWH 223
>pdb|3UYJ|A Chain A, Crystal Structure Of Jmjd5 Catalytic Core Domain In
Complex With Nickle And Alpha-Kg
pdb|3UYJ|B Chain B, Crystal Structure Of Jmjd5 Catalytic Core Domain In
Complex With Nickle And Alpha-Kg
Length = 248
Score = 31.6 bits (70), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 14/80 (17%)
Query: 120 HYDDIEAFILQLEGKKKWKVYLPRMVDEYLPRYSS--PNFSQEEI------------GTP 165
H D + F++Q+ G+K ++Y P+ P + N SQ ++ P
Sbjct: 153 HQDPQQNFLVQVMGRKYIRLYSPQESGALYPHDTHLLHNTSQVDVENPDLEKFPKFAKAP 212
Query: 166 ILTVTLEPGDLLYLPRGYIH 185
L+ L PG++L++P Y H
Sbjct: 213 FLSCILSPGEILFIPVKYWH 232
>pdb|3D8C|A Chain A, Factor Inhibiting Hif-1 Alpha D201g Mutant In Complex With
Zn(Ii), Alpha-Ketoglutarate And Hif-1 Alpha 19mer
Length = 349
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 62/154 (40%), Gaps = 36/154 (23%)
Query: 73 GCSIRFLNPQTYIKPLQQLNASLQELFGCFVGANTYQTPPTAQGFAPHYDDIEAFILQLE 132
G + ++N Q + QL ++L +G TP HY + + F Q++
Sbjct: 164 GFNWNWINKQQGKRGWGQLTSNL-----LLIGMEGNVTPA-------HYGEQQNFFAQIK 211
Query: 133 GKKKWKVYLP------------------RMVDEYLPRYSS-PNFSQEEIGTPILTVTLEP 173
G K+ ++ P VD P Y PNF Q +G + P
Sbjct: 212 GYKRCILFPPDQFECLYPYPVHHPCDRQSQVDFDNPDYERFPNF-QNVVG---YETVVGP 267
Query: 174 GDLLYLPRGYIHQASTVTNEHSLHVTISVYQKTA 207
GD+LY+P + H ++ N + +T++ + K A
Sbjct: 268 GDVLYIPMYWWHHIESLLN-GGITITVNFWYKGA 300
>pdb|3AL5|A Chain A, Crystal Structure Of Human Tyw5
pdb|3AL5|B Chain B, Crystal Structure Of Human Tyw5
pdb|3AL5|C Chain C, Crystal Structure Of Human Tyw5
pdb|3AL5|D Chain D, Crystal Structure Of Human Tyw5
pdb|3AL6|A Chain A, Crystal Structure Of Human Tyw5
pdb|3AL6|B Chain B, Crystal Structure Of Human Tyw5
pdb|3AL6|C Chain C, Crystal Structure Of Human Tyw5
pdb|3AL6|D Chain D, Crystal Structure Of Human Tyw5
Length = 338
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 12/91 (13%)
Query: 120 HYDDIEAFILQLEGKKKWKVYLPRMVDE-YLPRYSSP--NFSQEEIGT-PILT------V 169
HYD ++ ++Q+ GKK+ ++ PR YL S N ++ P+ +
Sbjct: 183 HYDVMDNLLIQVTGKKRVVLFSPRDAQYLYLKGTKSEVLNIDNPDLAKYPLFSKARRYEC 242
Query: 170 TLEPGDLLYLPRGYIHQASTVTNEHSLHVTI 200
+LE GD+L++P + H + ++ E + V I
Sbjct: 243 SLEAGDVLFIPALWFH--NVISEEFGVGVNI 271
>pdb|3UM1|A Chain A, Crystal Structure Of The Brox Bro1 Domain In Complex With
The C- Terminal Tail Of Chmp5
pdb|3UM1|D Chain D, Crystal Structure Of The Brox Bro1 Domain In Complex With
The C- Terminal Tail Of Chmp5
pdb|3UM2|A Chain A, Crystal Structure Of The Brox Bro1 Domain In Complex With
The C- Terminal Tail Of Chmp5
pdb|3UM2|D Chain D, Crystal Structure Of The Brox Bro1 Domain In Complex With
The C- Terminal Tail Of Chmp5
Length = 376
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 50/123 (40%), Gaps = 20/123 (16%)
Query: 179 LPRGYIHQASTVTNEHSLHVTISVYQKTAWIDLLEKAMPKALQAAGATDLEFRRGLPIGY 238
L +G+I+ T E L Q W D L+ +P A Q A + + + Y
Sbjct: 66 LLQGFINSLDESTQESKLRYI----QNFKWTDTLQGQVPSAQQDAVFELISMGFNVALWY 121
Query: 239 LRYAGLARGKPVDIQADRLAMKENLKDLLAKLVE-YVDLDDGVDEMGKQLMHDALPPVLS 297
+Y A RLA KEN+ + AK V + + G+ K L LP +++
Sbjct: 122 TKY------------ASRLAGKENITEDEAKEVHRSLKIAAGI---FKHLKESHLPKLIT 166
Query: 298 PEE 300
P E
Sbjct: 167 PAE 169
>pdb|2ILM|A Chain A, Factor Inhibiting Hif-1 Alpha D201a Mutant In Complex With
Fe(ii), Alpha-ketoglutarate And Hif-1 Alpha 35mer
Length = 349
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 62/154 (40%), Gaps = 36/154 (23%)
Query: 73 GCSIRFLNPQTYIKPLQQLNASLQELFGCFVGANTYQTPPTAQGFAPHYDDIEAFILQLE 132
G + ++N Q + QL ++L +G TP HY + + F Q++
Sbjct: 164 GFNWNWINKQQGKRGWGQLTSNL-----LLIGMEGNVTPA-------HYAEQQNFFAQIK 211
Query: 133 GKKKWKVYLP------------------RMVDEYLPRYSS-PNFSQEEIGTPILTVTLEP 173
G K+ ++ P VD P Y PNF Q +G + P
Sbjct: 212 GYKRCILFPPDQFECLYPYPVHHPCDRQSQVDFDNPDYERFPNF-QNVVG---YETVVGP 267
Query: 174 GDLLYLPRGYIHQASTVTNEHSLHVTISVYQKTA 207
GD+LY+P + H ++ N + +T++ + K A
Sbjct: 268 GDVLYIPMYWWHHIESLLN-GGITITVNFWYKGA 300
>pdb|3R9M|A Chain A, Crystal Structure Of The Brox Bro1 Domain
Length = 376
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 50/123 (40%), Gaps = 20/123 (16%)
Query: 179 LPRGYIHQASTVTNEHSLHVTISVYQKTAWIDLLEKAMPKALQAAGATDLEFRRGLPIGY 238
L +G+I+ T E L Q W D L+ +P A Q A + + + Y
Sbjct: 69 LLQGFINSLDESTQESKLRYI----QNFKWTDTLQGQVPSAQQDAVFELISMGFNVALWY 124
Query: 239 LRYAGLARGKPVDIQADRLAMKENLKDLLAKLVE-YVDLDDGVDEMGKQLMHDALPPVLS 297
+Y A RLA KEN+ + AK V + + G+ K L LP +++
Sbjct: 125 TKY------------ASRLAGKENITEDEAKEVHRSLKIAAGI---FKHLKESHLPKLIT 169
Query: 298 PEE 300
P E
Sbjct: 170 PAE 172
>pdb|3UM3|A Chain A, Crystal Structure Of The Brox Bro1 Domain In Complex With
The C- Terminal Tail Of Chmp4b
Length = 411
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 50/123 (40%), Gaps = 20/123 (16%)
Query: 179 LPRGYIHQASTVTNEHSLHVTISVYQKTAWIDLLEKAMPKALQAAGATDLEFRRGLPIGY 238
L +G+I+ T E L Q W D L+ +P A Q A + + + Y
Sbjct: 67 LLQGFINSLDESTQESKLRYI----QNFKWTDTLQGQVPSAQQDAVFELISMGFNVALWY 122
Query: 239 LRYAGLARGKPVDIQADRLAMKENLKDLLAKLVE-YVDLDDGVDEMGKQLMHDALPPVLS 297
+YA RLA KEN+ + AK V + + G+ K L LP +++
Sbjct: 123 TKYAS------------RLAGKENITEDEAKEVHRSLKIAAGI---FKHLKESHLPKLIT 167
Query: 298 PEE 300
P E
Sbjct: 168 PAE 170
>pdb|3ULY|A Chain A, Crystal Structure Of Brox Bro1 Domain In Complex With The
C-Terminal Tails Of Chmp5
pdb|3UM0|A Chain A, Crystal Structure Of The Brox Bro1 Domain In Complex With
The C- Terminal Tail Of Chmp5
Length = 410
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 50/123 (40%), Gaps = 20/123 (16%)
Query: 179 LPRGYIHQASTVTNEHSLHVTISVYQKTAWIDLLEKAMPKALQAAGATDLEFRRGLPIGY 238
L +G+I+ T E L Q W D L+ +P A Q A + + + Y
Sbjct: 66 LLQGFINSLDESTQESKLRYI----QNFKWTDTLQGQVPSAQQDAVFELISMGFNVALWY 121
Query: 239 LRYAGLARGKPVDIQADRLAMKENLKDLLAKLVE-YVDLDDGVDEMGKQLMHDALPPVLS 297
+YA RLA KEN+ + AK V + + G+ K L LP +++
Sbjct: 122 TKYAS------------RLAGKENITEDEAKEVHRSLKIAAGI---FKHLKESHLPKLIT 166
Query: 298 PEE 300
P E
Sbjct: 167 PAE 169
>pdb|3ZXP|A Chain A, Structural And Functional Analyses Of The Bro1 Domain
Protein Brox
pdb|3ZXP|B Chain B, Structural And Functional Analyses Of The Bro1 Domain
Protein Brox
pdb|3ZXP|C Chain C, Structural And Functional Analyses Of The Bro1 Domain
Protein Brox
Length = 407
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 50/123 (40%), Gaps = 20/123 (16%)
Query: 179 LPRGYIHQASTVTNEHSLHVTISVYQKTAWIDLLEKAMPKALQAAGATDLEFRRGLPIGY 238
L +G+I+ T E L Q W D L+ +P A Q A + + + Y
Sbjct: 73 LLQGFINSLDESTQESKLRYI----QNFKWTDTLQGQVPSAQQDAVFELISMGFNVALWY 128
Query: 239 LRYAGLARGKPVDIQADRLAMKENLKDLLAKLVE-YVDLDDGVDEMGKQLMHDALPPVLS 297
+Y A RLA KEN+ + AK V + + G+ K L LP +++
Sbjct: 129 TKY------------ASRLAGKENITEDEAKEVHRSLKIAAGI---FKHLKESHLPKLIT 173
Query: 298 PEE 300
P E
Sbjct: 174 PAE 176
>pdb|3DBG|A Chain A, Crystal Structure Of Cytochrome P450 170a1 (Cyp170a1) From
Streptomyces Coelicolor
pdb|3DBG|B Chain B, Crystal Structure Of Cytochrome P450 170a1 (Cyp170a1) From
Streptomyces Coelicolor
pdb|3EL3|A Chain A, Distinct Monooxygenase And Farnesene Synthase Active Sites
In Cytochrome P450 170a1
pdb|3EL3|B Chain B, Distinct Monooxygenase And Farnesene Synthase Active Sites
In Cytochrome P450 170a1
Length = 467
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 251 DIQADRLAMKENLKDLLAKLVEYVDLDDGVDEMGKQLMHDALPPVLSP 298
+I A+R A + DLL L+E D D D +G+Q +HD + +L+P
Sbjct: 229 EIIAERRASGQKPDDLLTALLEAKD--DNGDPIGEQEIHDQVVAILTP 274
>pdb|3LNU|A Chain A, Crystal Structure Of Pare Subunit
pdb|3LPS|A Chain A, Crystal Structure Of Pare
Length = 408
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 20 NLITSKKIDDILRDNVIEFKKNIDITLYEDGQRQTMDVEGRALP 63
N + + ID+ + + + K I++TLY+DG + D +GR +P
Sbjct: 52 NHLAQEVIDNSVDEALAGHAKQIEVTLYKDGSCEVSD-DGRGMP 94
>pdb|2IXA|A Chain A, A-Zyme, N-Acetylgalactosaminidase
pdb|2IXB|A Chain A, Crystal Structure Of N-Acetylgalactosaminidase In Complex
With Galnac
Length = 444
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 45/111 (40%), Gaps = 6/111 (5%)
Query: 5 KEPLYISRKQKNYYNNLITSKKIDDILRDNVIEFKKNIDITLYEDGQRQTMDVEGRALPQ 64
K+P + + Y N++ K ID + + E+ + + G+ M+V G +
Sbjct: 70 KKPAKVFGNGNDDYKNMLKDKNIDAVFVSSPWEWHHEHGVAAMKAGKIVGMEVSGAITLE 129
Query: 65 IVWDHYR----EGCSIRFLNPQTYIKPLQQ-LNASLQELFGCFV-GANTYQ 109
WD+ + G + L Y + + LN + +FG V G YQ
Sbjct: 130 ECWDYVKVSEQTGVPLMALENVCYRRDVMAILNMVRKGMFGELVHGTGGYQ 180
>pdb|1SQ5|A Chain A, Crystal Structure Of E. Coli Pantothenate Kinase
pdb|1SQ5|B Chain B, Crystal Structure Of E. Coli Pantothenate Kinase
pdb|1SQ5|C Chain C, Crystal Structure Of E. Coli Pantothenate Kinase
pdb|1SQ5|D Chain D, Crystal Structure Of E. Coli Pantothenate Kinase
Length = 308
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 9/44 (20%), Positives = 25/44 (56%)
Query: 180 PRGYIHQASTVTNEHSLHVTISVYQKTAWIDLLEKAMPKALQAA 223
P Y H + +T E ++ ++++++ W++L + +P +A+
Sbjct: 247 PDSYFHNYAKLTKEEAIKTAMTLWKEINWLNLKQNILPTRERAS 290
>pdb|4HXZ|A Chain A, Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And
Topoisomerase Iv, Part I: Structure Guided Discovery
And Optimization Of Dual Targeting Agents With Potent,
Broad-spectrum Enzymatic Activity.
pdb|4HXZ|B Chain B, Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And
Topoisomerase Iv, Part I: Structure Guided Discovery
And Optimization Of Dual Targeting Agents With Potent,
Broad-spectrum Enzymatic Activity.
pdb|4HY1|A Chain A, Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And
Topoisomerase Iv, Part I: Structure Guided Discovery
And Optimization Of Dual Targeting Agents With Potent,
Broad-spectrum Enzymatic Activity.
pdb|4HY1|B Chain B, Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And
Topoisomerase Iv, Part I: Structure Guided Discovery
And Optimization Of Dual Targeting Agents With Potent,
Broad-spectrum Enzymatic Activity.
pdb|4HYM|A Chain A, Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And
Topoisomerase Iv, Part I: Structure Guided Discovery
And Optimization Of Dual Targeting Agents With Potent,
Broad-spectrum Enzymatic Activity.
pdb|4HYM|B Chain B, Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And
Topoisomerase Iv, Part I: Structure Guided Discovery
And Optimization Of Dual Targeting Agents With Potent,
Broad-spectrum Enzymatic Activity
Length = 390
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Query: 8 LYISRKQKNYYNNLITSKKIDDILRDNVIEFKKNIDITLYEDGQRQTMDVEGRALP 63
+Y + + N+ I +D++L F I+ITLYED + D +GR +P
Sbjct: 24 MYTNIENPNHLIQEIIDNSVDEVLAG----FASKINITLYEDNSIEVAD-DGRGMP 74
>pdb|3FJS|A Chain A, Crystal Structure Of A Putative Biosynthetic Protein With
Rmlc-Like Cupin Fold (Reut_b4087) From Ralstonia
Eutropha Jmp134 At 1.90 A Resolution
pdb|3FJS|B Chain B, Crystal Structure Of A Putative Biosynthetic Protein With
Rmlc-Like Cupin Fold (Reut_b4087) From Ralstonia
Eutropha Jmp134 At 1.90 A Resolution
pdb|3FJS|C Chain C, Crystal Structure Of A Putative Biosynthetic Protein With
Rmlc-Like Cupin Fold (Reut_b4087) From Ralstonia
Eutropha Jmp134 At 1.90 A Resolution
pdb|3FJS|D Chain D, Crystal Structure Of A Putative Biosynthetic Protein With
Rmlc-Like Cupin Fold (Reut_b4087) From Ralstonia
Eutropha Jmp134 At 1.90 A Resolution
Length = 114
Score = 27.7 bits (60), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 161 EIGTPILTVTLEPGDLLYLPRGYIHQASTVTNEHSLHVTI 200
EIG L GDLLYL G H + +TN SL VT+
Sbjct: 68 EIGVDGAQRRLHQGDLLYLGAGAAHDVNAITNT-SLLVTV 106
>pdb|1ESM|A Chain A, Structural Basis For The Feedback Regulation Of
Escherichia Coli Pantothenate Kinase By Coenzyme A
pdb|1ESM|B Chain B, Structural Basis For The Feedback Regulation Of
Escherichia Coli Pantothenate Kinase By Coenzyme A
pdb|1ESM|C Chain C, Structural Basis For The Feedback Regulation Of
Escherichia Coli Pantothenate Kinase By Coenzyme A
pdb|1ESM|D Chain D, Structural Basis For The Feedback Regulation Of
Escherichia Coli Pantothenate Kinase By Coenzyme A
pdb|1ESN|A Chain A, Structural Basis For The Feedback Regulation Of
Escherichia Coli Pantothenate Kinase By Coenzyme A
pdb|1ESN|B Chain B, Structural Basis For The Feedback Regulation Of
Escherichia Coli Pantothenate Kinase By Coenzyme A
pdb|1ESN|C Chain C, Structural Basis For The Feedback Regulation Of
Escherichia Coli Pantothenate Kinase By Coenzyme A
pdb|1ESN|D Chain D, Structural Basis For The Feedback Regulation Of
Escherichia Coli Pantothenate Kinase By Coenzyme A
Length = 316
Score = 27.7 bits (60), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 9/44 (20%), Positives = 24/44 (54%)
Query: 180 PRGYIHQASTVTNEHSLHVTISVYQKTAWIDLLEKAMPKALQAA 223
P Y H + +T E ++ +++++ W++L + +P +A+
Sbjct: 255 PDSYFHNYAKLTKEEAIKTAXTLWKEINWLNLKQNILPTRERAS 298
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.137 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,559,958
Number of Sequences: 62578
Number of extensions: 466183
Number of successful extensions: 1249
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 1228
Number of HSP's gapped (non-prelim): 34
length of query: 339
length of database: 14,973,337
effective HSP length: 99
effective length of query: 240
effective length of database: 8,778,115
effective search space: 2106747600
effective search space used: 2106747600
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)