Query psy13797
Match_columns 339
No_of_seqs 253 out of 1125
Neff 6.2
Searched_HMMs 46136
Date Fri Aug 16 20:43:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13797.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13797hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3706|consensus 100.0 4.5E-90 9.7E-95 674.1 18.5 332 1-339 215-548 (629)
2 PF08007 Cupin_4: Cupin superf 100.0 1.7E-52 3.7E-57 405.4 16.4 301 1-339 7-319 (319)
3 COG2850 Uncharacterized conser 100.0 7.5E-31 1.6E-35 252.8 13.4 212 1-236 23-242 (383)
4 PF13621 Cupin_8: Cupin-like d 99.7 1.4E-18 3.1E-23 159.6 6.7 104 97-201 124-244 (251)
5 KOG2132|consensus 99.3 9E-13 2E-17 126.2 2.1 90 103-193 250-352 (355)
6 KOG2131|consensus 98.7 2.4E-08 5.2E-13 97.2 5.0 92 104-196 199-297 (427)
7 KOG2130|consensus 98.6 3.6E-08 7.8E-13 94.4 4.9 99 92-191 165-287 (407)
8 PF02373 JmjC: JmjC domain, hy 98.0 2.5E-06 5.5E-11 69.5 2.1 86 107-193 2-107 (114)
9 KOG2508|consensus 97.3 0.00035 7.6E-09 68.5 6.1 94 96-191 154-294 (437)
10 TIGR03037 anthran_nbaC 3-hydro 97.0 0.0041 8.9E-08 55.0 8.6 64 108-193 33-96 (159)
11 PRK13264 3-hydroxyanthranilate 96.7 0.0072 1.6E-07 54.3 8.1 61 111-193 42-102 (177)
12 COG1917 Uncharacterized conser 96.6 0.012 2.5E-07 49.6 8.5 70 107-202 47-117 (131)
13 PF07883 Cupin_2: Cupin domain 96.5 0.0037 8.1E-08 46.3 4.3 56 112-193 7-63 (71)
14 COG0662 {ManC} Mannose-6-phosp 96.5 0.015 3.2E-07 49.2 8.1 59 107-191 41-99 (127)
15 PF00190 Cupin_1: Cupin; Inte 96.2 0.0077 1.7E-07 51.7 5.2 65 110-191 42-108 (144)
16 COG4101 Predicted mannose-6-ph 96.0 0.02 4.4E-07 48.3 6.2 70 107-198 50-119 (142)
17 COG2140 Thermophilic glucose-6 95.6 0.083 1.8E-06 48.7 9.3 69 103-193 81-152 (209)
18 KOG1633|consensus 95.3 0.022 4.9E-07 61.7 5.3 84 109-195 132-224 (776)
19 TIGR03404 bicupin_oxalic bicup 94.9 0.45 9.8E-06 47.5 12.8 90 69-192 224-314 (367)
20 TIGR03404 bicupin_oxalic bicup 94.5 0.63 1.4E-05 46.5 12.7 69 102-192 67-135 (367)
21 PF06052 3-HAO: 3-hydroxyanthr 94.4 0.14 3E-06 44.9 6.8 70 107-200 37-106 (151)
22 smart00835 Cupin_1 Cupin. This 94.4 0.58 1.2E-05 40.1 10.7 73 108-201 36-109 (146)
23 PF02311 AraC_binding: AraC-li 94.2 0.16 3.4E-06 41.1 6.6 52 116-192 15-66 (136)
24 PRK15457 ethanolamine utilizat 93.7 0.29 6.2E-06 45.9 7.8 48 116-189 168-215 (233)
25 PRK04190 glucose-6-phosphate i 93.6 0.63 1.4E-05 42.4 9.8 56 118-193 88-146 (191)
26 PRK13290 ectC L-ectoine syntha 91.1 0.94 2E-05 38.4 7.2 51 117-191 48-99 (125)
27 PF05523 FdtA: WxcM-like, C-te 90.9 0.62 1.4E-05 39.7 5.9 71 108-202 38-111 (131)
28 TIGR03214 ura-cupin putative a 90.7 0.73 1.6E-05 43.8 6.8 60 107-193 184-244 (260)
29 PRK09943 DNA-binding transcrip 89.4 2.1 4.5E-05 38.1 8.4 27 168-194 147-173 (185)
30 PF06560 GPI: Glucose-6-phosph 88.4 0.42 9.1E-06 43.3 3.1 29 165-193 108-136 (182)
31 PF01050 MannoseP_isomer: Mann 88.2 2 4.3E-05 37.7 7.1 25 167-191 102-126 (151)
32 PRK13502 transcriptional activ 88.2 2.4 5.3E-05 39.7 8.3 51 116-191 30-80 (282)
33 smart00558 JmjC A domain famil 88.0 0.45 9.9E-06 34.2 2.5 28 105-133 28-57 (57)
34 PRK13500 transcriptional activ 87.6 2.6 5.7E-05 40.6 8.3 51 116-191 60-110 (312)
35 TIGR02272 gentisate_1_2 gentis 87.6 1.8 3.9E-05 42.9 7.2 62 111-197 89-150 (335)
36 PRK10296 DNA-binding transcrip 87.0 4.5 9.8E-05 37.9 9.4 59 106-189 25-83 (278)
37 TIGR01479 GMP_PMI mannose-1-ph 86.8 3.1 6.7E-05 42.8 8.8 34 168-201 416-449 (468)
38 TIGR03214 ura-cupin putative a 86.5 3.7 8E-05 39.0 8.5 71 107-203 63-135 (260)
39 PRK11171 hypothetical protein; 85.3 5.1 0.00011 38.2 8.8 62 107-193 66-127 (266)
40 PRK15401 alpha-ketoglutarate-d 85.3 7.3 0.00016 36.2 9.5 94 87-201 96-211 (213)
41 PF04970 LRAT: Lecithin retino 85.1 0.5 1.1E-05 39.5 1.6 31 169-199 5-36 (125)
42 PLN00212 glutelin; Provisional 84.6 2.7 5.9E-05 43.7 7.0 57 117-192 361-418 (493)
43 KOG2132|consensus 83.3 0.79 1.7E-05 45.0 2.3 120 65-191 140-277 (355)
44 PF05899 Cupin_3: Protein of u 82.9 0.75 1.6E-05 35.2 1.6 54 105-185 9-62 (74)
45 PF03079 ARD: ARD/ARD' family; 82.9 5.3 0.00012 35.3 7.2 25 166-190 114-138 (157)
46 PRK15460 cpsB mannose-1-phosph 82.6 6.7 0.00014 40.7 8.9 35 167-201 424-458 (478)
47 PRK10371 DNA-binding transcrip 82.6 3.8 8.2E-05 39.5 6.8 68 99-192 22-89 (302)
48 PF02041 Auxin_BP: Auxin bindi 82.5 7.9 0.00017 34.2 7.9 85 102-203 41-127 (167)
49 TIGR00568 alkb DNA alkylation 81.7 8.8 0.00019 34.3 8.3 78 84-181 72-160 (169)
50 TIGR02297 HpaA 4-hydroxyphenyl 81.3 4 8.6E-05 38.3 6.3 51 117-192 36-87 (287)
51 COG3837 Uncharacterized conser 80.1 12 0.00027 33.2 8.3 86 93-203 31-120 (161)
52 TIGR00218 manA mannose-6-phosp 79.8 0.88 1.9E-05 44.0 1.3 22 166-187 150-171 (302)
53 PF13532 2OG-FeII_Oxy_2: 2OG-F 79.3 8.1 0.00018 34.1 7.3 85 86-191 75-175 (194)
54 PF12852 Cupin_6: Cupin 78.9 6 0.00013 35.0 6.3 66 103-191 12-79 (186)
55 PRK13501 transcriptional activ 78.7 4.5 9.8E-05 38.2 5.8 50 117-191 31-80 (290)
56 PF06249 EutQ: Ethanolamine ut 78.7 1.4 3E-05 38.9 2.0 17 167-183 113-129 (152)
57 PRK15131 mannose-6-phosphate i 78.5 1.3 2.9E-05 44.6 2.2 23 167-189 237-259 (389)
58 PF00908 dTDP_sugar_isom: dTDP 77.6 9.9 0.00022 34.1 7.3 77 102-193 42-124 (176)
59 COG1482 ManA Phosphomannose is 77.0 1.4 3.1E-05 43.1 1.9 23 167-189 158-180 (312)
60 KOG2107|consensus 75.3 3.1 6.7E-05 37.2 3.3 27 164-190 113-139 (179)
61 COG3450 Predicted enzyme of th 74.3 2.3 5.1E-05 35.8 2.2 61 102-189 44-104 (116)
62 PLN00212 glutelin; Provisional 72.3 31 0.00066 36.1 10.2 26 168-193 149-174 (493)
63 PF09313 DUF1971: Domain of un 71.7 20 0.00044 28.2 6.8 53 128-198 29-81 (82)
64 COG4766 EutQ Ethanolamine util 70.2 9.1 0.0002 33.9 4.9 22 168-189 137-158 (176)
65 PF14525 AraC_binding_2: AraC- 69.8 65 0.0014 27.0 10.7 34 168-201 74-107 (172)
66 COG1898 RfbC dTDP-4-dehydrorha 69.5 28 0.00061 31.3 8.1 80 101-195 43-126 (173)
67 PF12973 Cupin_7: ChrR Cupin-l 68.4 4 8.6E-05 32.1 2.2 24 170-193 61-84 (91)
68 TIGR01221 rmlC dTDP-4-dehydror 66.3 32 0.0007 30.9 7.9 77 102-193 43-124 (176)
69 PLN02288 mannose-6-phosphate i 66.3 3.5 7.7E-05 41.7 1.9 22 168-189 252-273 (394)
70 PF13640 2OG-FeII_Oxy_3: 2OG-F 65.6 3.3 7.1E-05 32.6 1.2 21 170-190 65-86 (100)
71 TIGR01762 chlorin-enz chlorina 64.9 43 0.00093 32.3 9.0 26 166-191 208-233 (288)
72 PRK09685 DNA-binding transcrip 63.5 18 0.00039 34.1 6.1 25 168-192 90-114 (302)
73 PRK13503 transcriptional activ 62.8 8.3 0.00018 35.8 3.6 50 116-190 27-76 (278)
74 KOG2508|consensus 60.9 7.2 0.00016 39.0 2.8 39 163-201 357-398 (437)
75 PF06719 AraC_N: AraC-type tra 58.6 1.2E+02 0.0026 26.2 11.8 134 106-288 7-143 (155)
76 TIGR03027 pepcterm_export puta 57.4 5.9 0.00013 34.8 1.5 17 167-183 148-164 (165)
77 PF03171 2OG-FeII_Oxy: 2OG-Fe( 55.1 8.4 0.00018 30.1 1.9 76 104-201 5-95 (98)
78 smart00702 P4Hc Prolyl 4-hydro 53.7 90 0.0019 27.1 8.5 103 86-198 59-173 (178)
79 TIGR02451 anti_sig_ChrR anti-s 53.4 53 0.0011 30.3 7.1 24 169-192 163-186 (215)
80 COG1791 Uncharacterized conser 53.3 43 0.00092 30.3 6.1 26 165-190 116-141 (181)
81 PRK11171 hypothetical protein; 52.7 59 0.0013 30.9 7.6 27 166-192 222-248 (266)
82 COG3435 Gentisate 1,2-dioxygen 52.0 26 0.00057 34.4 5.0 50 118-191 106-155 (351)
83 PF07710 P53_tetramer: P53 tet 51.4 3.4 7.3E-05 28.7 -0.8 18 122-139 6-23 (42)
84 COG4297 Uncharacterized protei 50.3 36 0.00079 29.7 5.1 63 105-189 43-107 (163)
85 PRK10572 DNA-binding transcrip 49.6 56 0.0012 30.6 6.9 23 168-190 68-90 (290)
86 KOG3995|consensus 49.3 1E+02 0.0022 28.9 8.1 63 107-191 37-99 (279)
87 PF11699 CENP-C_C: Mif2/CENP-C 49.2 13 0.00028 29.6 2.0 24 168-191 52-75 (85)
88 KOG1356|consensus 48.7 5 0.00011 43.9 -0.5 31 163-193 795-825 (889)
89 PF13759 2OG-FeII_Oxy_5: Putat 48.2 25 0.00055 28.0 3.7 28 164-191 63-90 (101)
90 COG5285 Protein involved in bi 47.1 55 0.0012 32.0 6.3 26 166-191 192-217 (299)
91 PF01238 PMI_typeI: Phosphoman 42.1 13 0.00027 37.3 1.3 22 168-189 251-272 (373)
92 PRK05467 Fe(II)-dependent oxyg 38.9 38 0.00083 31.7 3.8 36 166-201 140-175 (226)
93 PF15138 Syncollin: Syncollin 38.8 24 0.00052 29.3 2.1 36 167-202 35-71 (112)
94 COG3145 AlkB Alkylated DNA rep 36.4 2.1E+02 0.0046 26.2 8.2 104 65-189 62-182 (194)
95 PF05995 CDO_I: Cysteine dioxy 36.1 1.2E+02 0.0026 26.9 6.5 78 109-198 80-161 (175)
96 TIGR03028 EpsE polysaccharide 34.2 20 0.00044 33.3 1.2 14 170-183 225-238 (239)
97 COG2164 Uncharacterized conser 33.1 20 0.00043 29.8 0.8 16 169-184 63-78 (126)
98 PF10014 2OG-Fe_Oxy_2: 2OG-Fe 32.6 80 0.0017 28.6 4.8 59 119-190 118-177 (195)
99 PRK05341 homogentisate 1,2-dio 32.5 34 0.00074 35.1 2.6 24 168-191 173-196 (438)
100 PF05721 PhyH: Phytanoyl-CoA d 32.4 36 0.00078 29.3 2.4 27 164-190 177-203 (211)
101 COG3257 GlxB Uncharacterized p 32.3 2E+02 0.0042 27.3 7.2 67 106-199 65-134 (264)
102 TIGR03028 EpsE polysaccharide 31.6 27 0.00058 32.5 1.6 16 167-182 147-162 (239)
103 PF04209 HgmA: homogentisate 1 31.0 35 0.00076 35.0 2.4 24 168-191 165-188 (424)
104 TIGR02219 phage_NlpC_fam putat 30.7 43 0.00093 28.4 2.6 29 170-198 76-108 (134)
105 PF07385 DUF1498: Protein of u 30.1 53 0.0012 30.8 3.2 85 106-192 90-179 (225)
106 TIGR01015 hmgA homogentisate 1 29.3 42 0.00091 34.4 2.6 23 168-190 167-189 (429)
107 TIGR02466 conserved hypothetic 28.6 66 0.0014 29.5 3.6 27 165-191 160-186 (201)
108 PLN02658 homogentisate 1,2-dio 28.3 45 0.00097 34.3 2.6 24 168-191 166-189 (435)
109 PF00877 NLPC_P60: NlpC/P60 fa 27.5 36 0.00078 27.0 1.5 31 169-199 50-82 (105)
110 PLN00052 prolyl 4-hydroxylase; 27.2 6E+02 0.013 24.9 12.4 148 17-181 58-220 (310)
111 COG0791 Spr Cell wall-associat 27.1 73 0.0016 28.3 3.5 33 165-197 133-169 (197)
112 KOG3646|consensus 26.4 50 0.0011 34.2 2.5 78 103-190 73-153 (486)
113 TIGR02408 ectoine_ThpD ectoine 25.6 66 0.0014 30.5 3.1 35 167-201 211-248 (277)
114 COG3822 ABC-type sugar transpo 25.4 2E+02 0.0043 26.6 5.9 28 165-192 151-178 (225)
115 PRK00924 5-keto-4-deoxyuronate 25.1 1.4E+02 0.003 28.9 5.2 48 116-188 66-113 (276)
116 TIGR02272 gentisate_1_2 gentis 23.5 2.9E+02 0.0064 27.4 7.3 23 168-190 289-311 (335)
117 PF11142 DUF2917: Protein of u 22.4 61 0.0013 24.1 1.7 16 168-183 37-52 (63)
118 PRK15078 polysaccharide export 21.1 53 0.0012 33.0 1.6 25 166-190 236-260 (379)
No 1
>KOG3706|consensus
Probab=100.00 E-value=4.5e-90 Score=674.11 Aligned_cols=332 Identities=43% Similarity=0.788 Sum_probs=318.7
Q ss_pred CCccccceeeccCCcCccCCCCCHHHHHHHHhhCCcccccccceEEeeCCcccccCCCccCChhhhhhhhccccceeecC
Q psy13797 1 DHWEKEPLYISRKQKNYYNNLITSKKIDDILRDNVIEFKKNIDITLYEDGQRQTMDVEGRALPQIVWDHYREGCSIRFLN 80 (339)
Q Consensus 1 ~yWekkPl~i~~~~~~~~~~l~s~~dl~~lL~~~~l~~~~~i~v~~y~~g~~~~~~~~g~~~~~~~~~~~~~G~tl~l~~ 80 (339)
+|||+++|+|+|.+|.||++|||.++|++||.++.++|++|+|+++|+||+|+++||+||+.|..+|.+|++||||+|.|
T Consensus 215 ~fwe~~allVqR~dptYfgslfsta~Ldell~r~hl~ygrnvnvarykNGkRetLN~~GRA~p~av~~f~q~~cSiqlln 294 (629)
T KOG3706|consen 215 EFWEQKALLVQRDDPTYFGSLFSTADLDELLSRGHLYYGRNVNVARYKNGKRETLNPDGRALPLAVWKFYQKGCSIQLLN 294 (629)
T ss_pred HHHhccceEEeccCccHHhhhhhHhhHHHHHhhcceeecccccceeeecCcceecCCccccchHHHHHHHhcCceEEeeC
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCCCchHHHHHHHHHHHhcCcccceEEeCCCCCCCCCCcccCCCcEEEEEEeEEEEEEeCCCCCCCCCCCCCCCCCCCC
Q psy13797 81 PQTYIKPLQQLNASLQELFGCFVGANTYQTPPTAQGFAPHYDDIEAFILQLEGKKKWKVYLPRMVDEYLPRYSSPNFSQE 160 (339)
Q Consensus 81 ~~~~~~~l~~~~~~Le~~~g~~v~~n~Y~tp~gs~gf~~H~D~~dvfvlQl~G~K~W~l~~p~~~~~~lp~~~~~~~~~~ 160 (339)
||+|...||++|..||++|||+||+|+|+||+|||||+||||++++||+|++|+|+||||.|..+...++..+++||+++
T Consensus 295 Pqty~drlwq~cevlqeqFgc~vGaNvYLTPagSqGfaPHyDdIeaFvlQvEGrK~Wrly~P~~~~eel~l~sS~Nf~ee 374 (629)
T KOG3706|consen 295 PQTYKDRLWQICEVLQEQFGCLVGANVYLTPAGSQGFAPHYDDIEAFVLQVEGRKHWRLYHPTVPLEELALVSSDNFTEE 374 (629)
T ss_pred chhHHHHHHHHHHHHHHHhccccccceeecCCCCCCCCCchhhhhhhhheeccceeeEeecCCCcHhhhhhccCCCCChh
Confidence 99999999999999999999999999999999999999999999999999999999999999887778999999999999
Q ss_pred cCCCCcEEEEEcCCCeeeeCCCceeeeecCCCcceeeeeecccccccHHHHHHHHHHHHHHHHccCCHHHHhcCCcchhh
Q psy13797 161 EIGTPILTVTLEPGDLLYLPRGYIHQASTVTNEHSLHVTISVYQKTAWIDLLEKAMPKALQAAGATDLEFRRGLPIGYLR 240 (339)
Q Consensus 161 ~~~~~~~e~~L~pGDvLYiPrG~~H~a~s~~~~~SlhlT~~~~~~~sw~dll~~~l~~~l~~~~~~d~~~R~~lp~~~~~ 240 (339)
++|+|.++++|+|||+||||||++|||.+.+..||+|+|+|+||+++|+|||+.++|.++..++.++.+||++||+++++
T Consensus 375 dlgePV~e~vle~GDllYfPRG~IHQA~t~~~vHSlHvTlStyqq~s~anlle~~ip~av~~a~d~~velRrGLP~~~fq 454 (629)
T KOG3706|consen 375 DLGEPVHEFVLEPGDLLYFPRGTIHQADTPALVHSLHVTLSTYQQNSWANLLEDTIPGAVFDAADEDVELRRGLPRGLFQ 454 (629)
T ss_pred HhCCchHHhhcCCCcEEEecCcceeeccccchhceeEEEeehhhhhhHHHHHHHHHHHHHHHHHhhhhHHhhCCChhHHH
Confidence 99999999999999999999999999999988999999999999999999999999999999999999999999999999
Q ss_pred ccCccCCCCCChHHHHHHHHHHHHHHHHHHhhccC--ChhhHHHHHHHhhhhcCCCCCCcchhccccccCCccccccCCc
Q psy13797 241 YAGLARGKPVDIQADRLAMKENLKDLLAKLVEYVD--LDDGVDEMGKQLMHDALPPVLSPEELQCSVFENGLRMSQTGEV 318 (339)
Q Consensus 241 ~~g~~~~~~~~~~~~r~~~~~~l~~l~~~l~~~~~--~~~a~d~~~~~f~~~~lPp~~~~~e~~~~~~~~~~~~~~~~~~ 318 (339)
++|..+++... .+| |.++++.|++++....+ +|.++|+|||+|||++|||++++.|+.+||+|.. ..++++
T Consensus 455 ~lg~~~~d~~~--~~r--lvekvr~lvdr~~~~~e~~vd~~vdqmaKdFih~aLPP~lt~~e~~lSv~G~a---~e~ln~ 527 (629)
T KOG3706|consen 455 LLGQVESDTVA--TRR--LVEKVRTLVDRLEGTKENLVDLLVDQMAKDFIHHALPPYLTGDEAELSVPGGA---LERLNS 527 (629)
T ss_pred HhChhccCCcc--HHH--HHHHHHHHHHHhcCcchhhHHHHHHHHHHHHHHhcCCCcccCccceeeccccc---CCCccc
Confidence 99999998876 665 99999999999986665 8899999999999999999999999999999862 234778
Q ss_pred ccceecCCCCcEEEEeCCccC
Q psy13797 319 YNATQITKDTKVRLVRANAVR 339 (339)
Q Consensus 319 ~~~~~~~~~t~~rl~r~~~~r 339 (339)
++..++|..|.|||||.+++|
T Consensus 528 v~~~qft~~t~vrllr~~iqr 548 (629)
T KOG3706|consen 528 VVRLQFTDHTVVRLLRDQIQR 548 (629)
T ss_pred eeeeeeccceEEEehhhhhHH
Confidence 888899999999999999987
No 2
>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors. The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.
Probab=100.00 E-value=1.7e-52 Score=405.45 Aligned_cols=301 Identities=37% Similarity=0.630 Sum_probs=211.8
Q ss_pred CCccccceeeccCCcCccCCCCCHHHHHHHHhhCCcccccc---cceEEeeCCcccccCCCccCChhhhhhhhccccce-
Q psy13797 1 DHWEKEPLYISRKQKNYYNNLITSKKIDDILRDNVIEFKKN---IDITLYEDGQRQTMDVEGRALPQIVWDHYREGCSI- 76 (339)
Q Consensus 1 ~yWekkPl~i~~~~~~~~~~l~s~~dl~~lL~~~~l~~~~~---i~v~~y~~g~~~~~~~~g~~~~~~~~~~~~~G~tl- 76 (339)
+|||||||+|+++.+ +|.++||+++|++|+.++.++++.. .+...|..+.....+..++..+++.|+++.+|+++
T Consensus 7 ~yw~kkPl~i~~~~~-~f~~l~s~~~l~~L~~~~~l~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~ 85 (319)
T PF08007_consen 7 EYWEKKPLLIRRADP-YFDDLFSWDDLDELLREEDLESRLVRGGRDADDYRLERGPFRNPRFRALPEKGWTLLVQGATLV 85 (319)
T ss_dssp HTTTTS-EEE--SGC-CCCCSCCHHHHCCHHHHSCHBBS-ECTCECCCCCCCTCEEE-E-SCEE-HHHHHHHHHTTEEE-
T ss_pred HHhccCCEEECCCCc-cccCccCHHHHHHHHHhcChHhhhhhcccccccceecccccccccchhhhHhhHHHHHhhhhhh
Confidence 599999999999988 7799999999999999999988321 23333444333333445677888999999999998
Q ss_pred -----eecCCcCCCchHHHHHHHHHHHhcCcccceEEeCCCCCCCCCCcccCCCcEEEEEEeEEEEEEeCCCCCCCCCCC
Q psy13797 77 -----RFLNPQTYIKPLQQLNASLQELFGCFVGANTYQTPPTAQGFAPHYDDIEAFILQLEGKKKWKVYLPRMVDEYLPR 151 (339)
Q Consensus 77 -----~l~~~~~~~~~l~~~~~~Le~~~g~~v~~n~Y~tp~gs~gf~~H~D~~dvfvlQl~G~K~W~l~~p~~~~~~lp~ 151 (339)
.|.++++|.|. |++++.|+++ |.|++|+|+||+|++||+||||++||||+|++|+|+|+||.+... ..+.
T Consensus 86 ~~~~~~l~~~~~~~~~-~~~~~~l~~~--~~~~~n~Y~tp~g~~g~~~H~D~~dvfvlQ~~G~K~W~l~~~~~~--~~~~ 160 (319)
T PF08007_consen 86 LPELARLLQPFRFIPQ-WRLDDLLESF--CPVGANAYLTPPGSQGFGPHYDDHDVFVLQLEGRKRWRLYPPPDE--PAPL 160 (319)
T ss_dssp ECTCCEEC-GGGTHHH-HHHHHHHHHH--S-EEEEEEEETSSBEESECEE-SSEEEEEEEES-EEEEEE-SCCC--TTTS
T ss_pred hHHHHHHHHHHhhChH-HHHHHHhhhc--cccceEEEecCCCCCCccCEECCcccEEEECCceeEEEECCCCcc--cccc
Confidence 78888899998 9999999999 999999999999999999999999999999999999999996432 3444
Q ss_pred CCCCCCCCCcCCCCcEEEEEcCCCeeeeCCCceeeeecCCCcceeeeeecccccccHHHHHHHHHHHHHHHHccCCHHHH
Q psy13797 152 YSSPNFSQEEIGTPILTVTLEPGDLLYLPRGYIHQASTVTNEHSLHVTISVYQKTAWIDLLEKAMPKALQAAGATDLEFR 231 (339)
Q Consensus 152 ~~~~~~~~~~~~~~~~e~~L~pGDvLYiPrG~~H~a~s~~~~~SlhlT~~~~~~~sw~dll~~~l~~~l~~~~~~d~~~R 231 (339)
.+..++...+..++..+++|+|||+|||||||||++++.+ .|+|+|+++. .++|.|++..+++.++......+..||
T Consensus 161 ~~~~~~~~~~~~~~~~~~~L~pGD~LYlPrG~~H~~~~~~--~S~hltv~~~-~~t~~dl~~~~~~~l~~~~~~~~~~~r 237 (319)
T PF08007_consen 161 YSDQPFKQLEEFEPVEEVVLEPGDVLYLPRGWWHQAVTTD--PSLHLTVGFR-APTWADLLESLLDALLDQAPEEDERLR 237 (319)
T ss_dssp SCE--TTTCG--STSEEEEE-TT-EEEE-TT-EEEEEESS---EEEEEEEEC-CEBHHHHHHCHHHHHHHHHHHHCHHHH
T ss_pred cCCCCccccccCceeEEEEECCCCEEEECCCccCCCCCCC--CceEEEEeee-CCchhhHHHHHHHHHHHhccccccccc
Confidence 4555666555568999999999999999999999999974 8999999975 689999999999988887776689999
Q ss_pred hcCCcchhhccCccCCCCCChHHHHHHHHHHHHHHHHHHhh---ccCChhhHHHHHHHhhhhcCCCCCCcchhccccccC
Q psy13797 232 RGLPIGYLRYAGLARGKPVDIQADRLAMKENLKDLLAKLVE---YVDLDDGVDEMGKQLMHDALPPVLSPEELQCSVFEN 308 (339)
Q Consensus 232 ~~lp~~~~~~~g~~~~~~~~~~~~r~~~~~~l~~l~~~l~~---~~~~~~a~d~~~~~f~~~~lPp~~~~~e~~~~~~~~ 308 (339)
+++|..+ ...|....+ ..+++.+.|.++++.... ...-....++|+++ +.+++||+...+.
T Consensus 238 ~~l~~~~-~~~~~~~~~------~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~lp~~~~~e~-------- 301 (319)
T PF08007_consen 238 DPLPRGF-DDPGELSAD------ELDALRAALAELLDDPADLARWLGEFLTESRMEKD-MAPRLPPFEEDEV-------- 301 (319)
T ss_dssp SBHHCTG-GTTTCCCCC------HHHHHHHHHHHHHHHHHHHHCC-HHHHHCCHHHHH-HHHS----TTEE---------
T ss_pred CCCCcCC-CCcccCChH------HHHHHHHHHHHHHhhHHHHHHHHHHHhccchhhcc-cCCCCCCCCchHH--------
Confidence 9999988 555654322 124555555665553322 22112234467788 8999999854431
Q ss_pred CccccccCCcccceecCCCCcEEEEeCCccC
Q psy13797 309 GLRMSQTGEVYNATQITKDTKVRLVRANAVR 339 (339)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~t~~rl~r~~~~r 339 (339)
.++-.++.++|+|.+.+|
T Consensus 302 -------------~~~~~~~g~~~~r~~~~r 319 (319)
T PF08007_consen 302 -------------RELLTETGVRLERDPGVR 319 (319)
T ss_dssp -----------------TT-EEEES-TTSE-
T ss_pred -------------HHHHHcCCCEEecCCCCC
Confidence 145567888999988877
No 3
>COG2850 Uncharacterized conserved protein [Function unknown]
Probab=99.97 E-value=7.5e-31 Score=252.79 Aligned_cols=212 Identities=20% Similarity=0.349 Sum_probs=153.1
Q ss_pred CCccccceeeccCCcCccCCCCCHHHHHHHHhhCCcccccccceEEeeCCccc-ccCCCccCChhhhhhhhc--ccccee
Q psy13797 1 DHWEKEPLYISRKQKNYYNNLITSKKIDDILRDNVIEFKKNIDITLYEDGQRQ-TMDVEGRALPQIVWDHYR--EGCSIR 77 (339)
Q Consensus 1 ~yWekkPl~i~~~~~~~~~~l~s~~dl~~lL~~~~l~~~~~i~v~~y~~g~~~-~~~~~g~~~~~~~~~~~~--~G~tl~ 77 (339)
+||+||||+||++.|++ -+.+|++||.+|.+++++.++.. ....+|.++ .+.|+.. .+++. ++.||-
T Consensus 23 ~YWqkKPlliR~a~p~~-~~p~~pdeLa~La~~edV~srLV---~~~~~~~w~~~~gPfe~------~d~~~~p~~wsll 92 (383)
T COG2850 23 DYWQKKPLLIRNAFPEF-HSPLSPDELAGLAQEEDVTSRLV---SHESDGTWQVSHGPFEE------EDFLGLPRNWSLL 92 (383)
T ss_pred HHhhhcchHHhhccccc-ccCCCHHHHHHHhccccccchhh---hhccCCceeEeeCccch------hccccCCcCceEE
Confidence 59999999999999986 47789999999999999988642 223355544 4555422 22222 477777
Q ss_pred ecCCcCCCchHHHHHHHHHHH---hc--CcccceEEeCCCCCCCCCCcccCCCcEEEEEEeEEEEEEeCCCCCCCCCCCC
Q psy13797 78 FLNPQTYIKPLQQLNASLQEL---FG--CFVGANTYQTPPTAQGFAPHYDDIEAFILQLEGKKKWKVYLPRMVDEYLPRY 152 (339)
Q Consensus 78 l~~~~~~~~~l~~~~~~Le~~---~g--~~v~~n~Y~tp~gs~gf~~H~D~~dvfvlQl~G~K~W~l~~p~~~~~~lp~~ 152 (339)
+.....++|.+.++...+... -+ .|| .|..++| |+++|||.||||++|..|+|||+|-.+.......|
T Consensus 93 vq~vd~w~p~v~~l~~~FrflP~wr~ddiMI---S~a~~GG--gvg~H~D~YDVfliQg~G~RRW~v~~~~~~~~~~~-- 165 (383)
T COG2850 93 VQAVDHWHPEVAALMEPFRFLPDWRIDDIMI---SFAAPGG--GVGPHFDQYDVFLIQGQGRRRWRVGKKCNMSTLCP-- 165 (383)
T ss_pred EehhhhcCHHHHHHHHHhccCccccccceEE---EEecCCC--ccCccccchheeEEeecccceeecCCcccccCcCC--
Confidence 777888888877766643210 00 244 5888888 56699999999999999999999999977655555
Q ss_pred CCCCCCCCcCCCCcEEEEEcCCCeeeeCCCceeeeecCCCcceeeeeecccccccHHHHHHHHHHHHHHHHccCCHHHHh
Q psy13797 153 SSPNFSQEEIGTPILTVTLEPGDLLYLPRGYIHQASTVTNEHSLHVTISVYQKTAWIDLLEKAMPKALQAAGATDLEFRR 232 (339)
Q Consensus 153 ~~~~~~~~~~~~~~~e~~L~pGDvLYiPrG~~H~a~s~~~~~SlhlT~~~~~~~sw~dll~~~l~~~l~~~~~~d~~~R~ 232 (339)
.++......+++.++.+|+||||||||+||||+..+.++| +|.+||+ +.++..+++...+..+++.. ..++|-
T Consensus 166 -~~d~~~~~~f~~~~d~vlepGDiLYiPp~~~H~gvae~dc--~tySvG~-r~Pn~~ell~~~~~~~~~~~---~~~~ry 238 (383)
T COG2850 166 -HPDLLILAPFEPDIDEVLEPGDILYIPPGFPHYGVAEDDC--MTYSVGF-RAPNTRELLSGFLDFFLQRE---SDELRY 238 (383)
T ss_pred -CcchhhcCCCCchhhhhcCCCceeecCCCCCcCCcccccc--cceeeec-cCCcHHHHHHHHHhhccccc---cccccc
Confidence 2333333446788999999999999999999999999778 4444443 46889999998876655432 225665
Q ss_pred cCCc
Q psy13797 233 GLPI 236 (339)
Q Consensus 233 ~lp~ 236 (339)
+.|-
T Consensus 239 sd~~ 242 (383)
T COG2850 239 SDAD 242 (383)
T ss_pred cccC
Confidence 5543
No 4
>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A ....
Probab=99.75 E-value=1.4e-18 Score=159.62 Aligned_cols=104 Identities=31% Similarity=0.567 Sum_probs=67.6
Q ss_pred HHhcCc-ccceEEeCCCCCCCCCCcccCCCcEEEEEEeEEEEEEeCCCCCCCCCCCC--------CCCC-----CCCCc-
Q psy13797 97 ELFGCF-VGANTYQTPPTAQGFAPHYDDIEAFILQLEGKKKWKVYLPRMVDEYLPRY--------SSPN-----FSQEE- 161 (339)
Q Consensus 97 ~~~g~~-v~~n~Y~tp~gs~gf~~H~D~~dvfvlQl~G~K~W~l~~p~~~~~~lp~~--------~~~~-----~~~~~- 161 (339)
+.++.. ..+|+|++++|+.+ ++|||..+++++||.|+|+|+||+|.......+.. +..+ ....+
T Consensus 124 ~~~~~~~~~~~l~ig~~gs~t-~lH~D~~~n~~~~i~G~K~~~L~pP~~~~~l~~~~~~~~~~~~~~~d~~~~d~~~~p~ 202 (251)
T PF13621_consen 124 ELFGKEPQSSNLWIGPPGSFT-PLHYDPSHNLLAQIRGRKRWILFPPDDSPNLYPRPDSHGGTVFSWVDPDNPDLERFPK 202 (251)
T ss_dssp CHSCCHCCEEEEEEE-TTEEE-EEEE-SSEEEEEEEESEEEEEEE-GGGGGGCTBETTTST-TCBBSS-TTS--TTT-CG
T ss_pred hhcccCccccEEEEeCCCcee-eeeECchhhhhhccCCCEEEEEECCccccccccceecccccceeeeeccChhhhhhhh
Confidence 445543 46799999999875 89999999999999999999999998654332221 1111 11111
Q ss_pred -CCCCcEEEEEcCCCeeeeCCCceeeeecC-CCcceeeeeec
Q psy13797 162 -IGTPILTVTLEPGDLLYLPRGYIHQASTV-TNEHSLHVTIS 201 (339)
Q Consensus 162 -~~~~~~e~~L~pGDvLYiPrG~~H~a~s~-~~~~SlhlT~~ 201 (339)
...+.++++|+|||+||||+||||+|+++ ++..|+.+++-
T Consensus 203 ~~~~~~~~~~l~pGD~LfiP~gWwH~V~~~~~~~~sisvn~w 244 (251)
T PF13621_consen 203 FRKAPPYEVVLEPGDVLFIPPGWWHQVENLSDDDLSISVNYW 244 (251)
T ss_dssp GGG--EEEEEEETT-EEEE-TT-EEEEEESTTSSCEEEEEEE
T ss_pred hccCceeEEEECCCeEEEECCCCeEEEEEcCCCCeEEEEEEE
Confidence 12378999999999999999999999998 22234444443
No 5
>KOG2132|consensus
Probab=99.29 E-value=9e-13 Score=126.17 Aligned_cols=90 Identities=21% Similarity=0.416 Sum_probs=72.2
Q ss_pred ccceEEeCCCCCCCCCCcccCCCcEEEEEEeEEEEEEeCCCCCCCCCCCCC------CCCCCCCcC-------CCCcEEE
Q psy13797 103 VGANTYQTPPTAQGFAPHYDDIEAFILQLEGKKKWKVYLPRMVDEYLPRYS------SPNFSQEEI-------GTPILTV 169 (339)
Q Consensus 103 v~~n~Y~tp~gs~gf~~H~D~~dvfvlQl~G~K~W~l~~p~~~~~~lp~~~------~~~~~~~~~-------~~~~~e~ 169 (339)
+..|+|++|+|++. ++|+|.+++++.|+.|+|+|++|+|......+|..+ ..+....++ ....+++
T Consensus 250 v~~~~w~GpaGtV~-pih~dp~hNi~~qv~G~k~i~l~~p~~s~~lyP~d~~~~~tsqvdvenPdlk~fp~~~k~~~l~~ 328 (355)
T KOG2132|consen 250 VDINAWIGPAGTVL-PIHMDPWHNILSQVFGRKRIRLYPPEDSGALYPTDTYLLETSQVDVENPDLKAFPKFAKARFLDC 328 (355)
T ss_pred cceeEEeccCCcee-ccccccccceeeeeecceEEEEecCcccCCCCCccchhhcccccccCCCChhhhhHHHHHHHHHH
Confidence 67899999999986 899999999999999999999999987656666531 112221111 2457899
Q ss_pred EEcCCCeeeeCCCceeeeecCCCc
Q psy13797 170 TLEPGDLLYLPRGYIHQASTVTNE 193 (339)
Q Consensus 170 ~L~pGDvLYiPrG~~H~a~s~~~~ 193 (339)
+|+|||+||+|+-|||.+++.+.+
T Consensus 329 lL~pGe~L~iP~kwwhyvrs~d~s 352 (355)
T KOG2132|consen 329 LLEPGEALFIPPKWWHYVRSLDKS 352 (355)
T ss_pred hcCCchhccccHHHhhhhhhcccc
Confidence 999999999999999999998533
No 6
>KOG2131|consensus
Probab=98.65 E-value=2.4e-08 Score=97.20 Aligned_cols=92 Identities=23% Similarity=0.477 Sum_probs=67.3
Q ss_pred cceEEeCCCCCCCCCCcccCCC--cEEEEEEeEEEEEEeCCCCCCCCCCCCCCCCCCC-----CcCCCCcEEEEEcCCCe
Q psy13797 104 GANTYQTPPTAQGFAPHYDDIE--AFILQLEGKKKWKVYLPRMVDEYLPRYSSPNFSQ-----EEIGTPILTVTLEPGDL 176 (339)
Q Consensus 104 ~~n~Y~tp~gs~gf~~H~D~~d--vfvlQl~G~K~W~l~~p~~~~~~lp~~~~~~~~~-----~~~~~~~~e~~L~pGDv 176 (339)
.-.+|++|.|+- .+.|-|... -|.+-|-|+|+|.+++|.++.....++..-.|+. .+-..+.+++.-+||.+
T Consensus 199 yrFvy~Gp~gSw-tp~HaDVf~s~swS~nicG~KrWl~~pP~qe~~l~dr~gnlp~~~~~~~ld~~~~~~lei~Qepge~ 277 (427)
T KOG2131|consen 199 YRFVYAGPAGSW-TPFHADVFHSPSWSVNICGRKRWLLYPPEQEQTLADRYGNLPLPSWITKLDLFRGPLLEIFQEPGET 277 (427)
T ss_pred eeEEEeccCCCC-CccchhhhcCCcceeeeecceeEEEeChHHhhhhhhhccCcCCccccccccccccchhhhhccCCce
Confidence 356899999985 599999664 6789999999999999987432222221111111 11235678999999999
Q ss_pred eeeCCCceeeeecCCCccee
Q psy13797 177 LYLPRGYIHQASTVTNEHSL 196 (339)
Q Consensus 177 LYiPrG~~H~a~s~~~~~Sl 196 (339)
+|+|.||-|||..++|..|+
T Consensus 278 VFvPsGW~hQV~NL~dTISI 297 (427)
T KOG2131|consen 278 VFVPSGWHHQVLNLGDTISI 297 (427)
T ss_pred eeccCccccccccccceeee
Confidence 99999999999999876444
No 7
>KOG2130|consensus
Probab=98.61 E-value=3.6e-08 Score=94.42 Aligned_cols=99 Identities=18% Similarity=0.307 Sum_probs=63.9
Q ss_pred HHHHHHHhcCc---ccceEEeCCCCCCCCCCcccCC--CcEEEEEEeEEEEEEeCCCCCCCCC---CCCC--C-------
Q psy13797 92 NASLQELFGCF---VGANTYQTPPTAQGFAPHYDDI--EAFILQLEGKKKWKVYLPRMVDEYL---PRYS--S------- 154 (339)
Q Consensus 92 ~~~Le~~~g~~---v~~n~Y~tp~gs~gf~~H~D~~--dvfvlQl~G~K~W~l~~p~~~~~~l---p~~~--~------- 154 (339)
.+.|-+++|-. -.-=+-++|+++ |.+.|.|+. .+...-|.|.|||-||+|..+...+ +... .
T Consensus 165 ~dDlF~y~g~e~RPpyRWfvmGParS-GtsiHIDPlgTSAWNtll~GhKrW~LfPp~~p~~lvkv~~~e~g~~~de~itw 243 (407)
T KOG2130|consen 165 RDDLFQYLGEERRPPYRWFVMGPARS-GTSIHIDPLGTSAWNTLLQGHKRWVLFPPGTPPELVKVTVDEGGKQPDEIITW 243 (407)
T ss_pred hHHHHHhcCcccCCCceeEEecCCCC-CceeEECCcchHHHHHHhhccceeEEcCCCCCCCceeecccccCCCCcceech
Confidence 34455555531 112255688887 668999976 4566678899999999997643211 1110 0
Q ss_pred --CCC-----CCCcCCCCcEEEEEcCCCeeeeCCCceeeeecCC
Q psy13797 155 --PNF-----SQEEIGTPILTVTLEPGDLLYLPRGYIHQASTVT 191 (339)
Q Consensus 155 --~~~-----~~~~~~~~~~e~~L~pGDvLYiPrG~~H~a~s~~ 191 (339)
.-+ +..+.....+|+...||+++|+|.||||.+..++
T Consensus 244 f~~~y~rt~~Pswp~E~kPIEc~q~pGEt~fVP~GWWHvVlNle 287 (407)
T KOG2130|consen 244 FSTIYPRTQLPSWPDEYKPIECLQKPGETMFVPSGWWHVVLNLE 287 (407)
T ss_pred hhhccccccCCCCccccCCceeeecCCceEEecCCeEEEEeccC
Confidence 001 1001113456999999999999999999999985
No 8
>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with jmjN (see IPR003349 from INTERPRO) and belongs to the Cupin superfamily [].; PDB: 2YU2_A 2YU1_A 3AVR_A 3AVS_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=98.02 E-value=2.5e-06 Score=69.54 Aligned_cols=86 Identities=21% Similarity=0.428 Sum_probs=52.3
Q ss_pred EEeCCCCCCCCCCcccCCCcE---EEEEEeEEEEEEeCCCCCCCC-----------CCCC---CCCCCCC---CcCCCCc
Q psy13797 107 TYQTPPTAQGFAPHYDDIEAF---ILQLEGKKKWKVYLPRMVDEY-----------LPRY---SSPNFSQ---EEIGTPI 166 (339)
Q Consensus 107 ~Y~tp~gs~gf~~H~D~~dvf---vlQl~G~K~W~l~~p~~~~~~-----------lp~~---~~~~~~~---~~~~~~~ 166 (339)
+|++..++. ++.|.|+.... ..-.-|+|.|.+.++.+.... .|.. ...-+.+ .+.+.+.
T Consensus 2 ~~ig~~~s~-t~~H~e~~~~~sv~~~~~g~~k~W~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~gi~~ 80 (114)
T PF02373_consen 2 LYIGMKGSY-TPWHIEDNGLSSVNYHHFGGSKVWYIVPPEDADKFEKFLRSKESQNCPQFLDHKNIFVSPEQLKKAGIPV 80 (114)
T ss_dssp EEEE-TTEE-EEEEE-GGG-EEEEEEEEESEEEEEEE-GGGHHHHHHHHHHHHHHHSTTGGCTGGEEEGHHHHHHTTS--
T ss_pred EEEeCCCcC-CCcEecCCCCceeeeeccCcceEeEEechhhhhhHHHHHhhcccccccccccccccccceeeeeccCccc
Confidence 689999986 48999988754 345778999999999753210 0100 0000011 1236789
Q ss_pred EEEEEcCCCeeeeCCCceeeeecCCCc
Q psy13797 167 LTVTLEPGDLLYLPRGYIHQASTVTNE 193 (339)
Q Consensus 167 ~e~~L~pGDvLYiPrG~~H~a~s~~~~ 193 (339)
+.++.+|||++++|+|++|++.+.+++
T Consensus 81 ~~~~Q~~Ge~V~i~pg~~H~v~n~g~~ 107 (114)
T PF02373_consen 81 YRFVQKPGEFVFIPPGAYHQVFNLGDN 107 (114)
T ss_dssp EEEEEETT-EEEE-TT-EEEEEESSSE
T ss_pred ccceECCCCEEEECCCceEEEEeCCce
Confidence 999999999999999999999998644
No 9
>KOG2508|consensus
Probab=97.34 E-value=0.00035 Score=68.50 Aligned_cols=94 Identities=27% Similarity=0.371 Sum_probs=67.8
Q ss_pred HHHhcCcc-cceEEeCCCCCCCCCCcccCCCcEEEEEEeEEEEEEeCCCCCCCCCCCC-------C----CCCCC-----
Q psy13797 96 QELFGCFV-GANTYQTPPTAQGFAPHYDDIEAFILQLEGKKKWKVYLPRMVDEYLPRY-------S----SPNFS----- 158 (339)
Q Consensus 96 e~~~g~~v-~~n~Y~tp~gs~gf~~H~D~~dvfvlQl~G~K~W~l~~p~~~~~~lp~~-------~----~~~~~----- 158 (339)
.+.||++- .+|+|++...+.+ ..|-|.|||+.+-|.|.|++.|.+|.+.. .+|.. + ...|.
T Consensus 154 ~eafgk~PdavNlWiG~~~avT-SlHkDhyENlYaViSGeKhFvlipP~d~~-~lp~eiyp~g~ysy~~e~g~fk~e~~d 231 (437)
T KOG2508|consen 154 PEAFGKVPDAVNLWIGKSEAVT-SLHKDHYENLYAVISGEKHFVLIPPDDAN-QLPLEIYPNGLYSYEGEDGPFKSEGLD 231 (437)
T ss_pred HHHhCCChhheeeeeccccccc-ccccccccceEEEEeccceEEEeCccccc-ccceeecCCcceeeecCCCceeecccc
Confidence 45788754 6899999988865 69999999999999999999999998743 23321 0 00010
Q ss_pred CC------------------------------cCCCCcEEEEEcCCCeeeeCCCceeeeecCC
Q psy13797 159 QE------------------------------EIGTPILTVTLEPGDLLYLPRGYIHQASTVT 191 (339)
Q Consensus 159 ~~------------------------------~~~~~~~e~~L~pGDvLYiPrG~~H~a~s~~ 191 (339)
+. +.+....-..+.+|+++|.|+-|-|.+-...
T Consensus 232 Ee~~~~a~~~~svd~~~s~~~~a~~~~k~~l~~~~~k~~~~rv~a~~i~~lp~~w~h~~sq~~ 294 (437)
T KOG2508|consen 232 EEDAAIAKTWFSVDPIGSPKELAVPQEKIPLLEAEYKPEMDRVLAGQILYLPEDWFHHVSQVG 294 (437)
T ss_pred hhhhhhcceeeeecccCCHHHhccchhhCccccccccceeeeeeccccccChhhhhhhccccC
Confidence 00 0011234567889999999999999987764
No 10
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=96.98 E-value=0.0041 Score=55.02 Aligned_cols=64 Identities=27% Similarity=0.286 Sum_probs=50.4
Q ss_pred EeCCCCCCCCCCcccCCCcEEEEEEeEEEEEEeCCCCCCCCCCCCCCCCCCCCcCCCCcEEEEEcCCCeeeeCCCceeee
Q psy13797 108 YQTPPTAQGFAPHYDDIEAFILQLEGKKKWKVYLPRMVDEYLPRYSSPNFSQEEIGTPILTVTLEPGDLLYLPRGYIHQA 187 (339)
Q Consensus 108 Y~tp~gs~gf~~H~D~~dvfvlQl~G~K~W~l~~p~~~~~~lp~~~~~~~~~~~~~~~~~e~~L~pGDvLYiPrG~~H~a 187 (339)
.++.+|.+ +..|.+..|-|..|++|+=...+-... ...+++|++||++++|+|..|..
T Consensus 33 ~vgGpn~R-~d~H~~~tdE~FyqleG~~~l~v~d~g---------------------~~~~v~L~eGd~flvP~gvpHsP 90 (159)
T TIGR03037 33 VVGGPNAR-TDFHDDPGEEFFYQLKGEMYLKVTEEG---------------------KREDVPIREGDIFLLPPHVPHSP 90 (159)
T ss_pred EeCCCCCC-cccccCCCceEEEEEcceEEEEEEcCC---------------------cEEEEEECCCCEEEeCCCCCccc
Confidence 34455544 468999899999999999888876541 12369999999999999999999
Q ss_pred ecCCCc
Q psy13797 188 STVTNE 193 (339)
Q Consensus 188 ~s~~~~ 193 (339)
...+++
T Consensus 91 ~r~~~t 96 (159)
T TIGR03037 91 QRPAGS 96 (159)
T ss_pred ccCCCc
Confidence 997554
No 11
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=96.72 E-value=0.0072 Score=54.34 Aligned_cols=61 Identities=30% Similarity=0.379 Sum_probs=48.7
Q ss_pred CCCCCCCCCcccCCCcEEEEEEeEEEEEEeCCCCCCCCCCCCCCCCCCCCcCCCCcEEEEEcCCCeeeeCCCceeeeecC
Q psy13797 111 PPTAQGFAPHYDDIEAFILQLEGKKKWKVYLPRMVDEYLPRYSSPNFSQEEIGTPILTVTLEPGDLLYLPRGYIHQASTV 190 (339)
Q Consensus 111 p~gs~gf~~H~D~~dvfvlQl~G~K~W~l~~p~~~~~~lp~~~~~~~~~~~~~~~~~e~~L~pGDvLYiPrG~~H~a~s~ 190 (339)
.+|.. +..|+|..|-|..|++|.=...+-... ...+++|.+||++++|+|..|..+..
T Consensus 42 Gpn~r-~d~H~~~tdE~FyqleG~~~l~v~d~g---------------------~~~~v~L~eGd~fllP~gvpHsP~r~ 99 (177)
T PRK13264 42 GPNAR-TDFHYDPGEEFFYQLEGDMYLKVQEDG---------------------KRRDVPIREGEMFLLPPHVPHSPQRE 99 (177)
T ss_pred cCCcc-cccccCCCceEEEEECCeEEEEEEcCC---------------------ceeeEEECCCCEEEeCCCCCcCCccC
Confidence 44433 468999999999999999988886531 11369999999999999999999886
Q ss_pred CCc
Q psy13797 191 TNE 193 (339)
Q Consensus 191 ~~~ 193 (339)
+++
T Consensus 100 ~~t 102 (177)
T PRK13264 100 AGS 102 (177)
T ss_pred CCe
Confidence 443
No 12
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=96.63 E-value=0.012 Score=49.61 Aligned_cols=70 Identities=23% Similarity=0.269 Sum_probs=53.3
Q ss_pred EEeCCCCCCCCCCcccC-CCcEEEEEEeEEEEEEeCCCCCCCCCCCCCCCCCCCCcCCCCcEEEEEcCCCeeeeCCCcee
Q psy13797 107 TYQTPPTAQGFAPHYDD-IEAFILQLEGKKKWKVYLPRMVDEYLPRYSSPNFSQEEIGTPILTVTLEPGDLLYLPRGYIH 185 (339)
Q Consensus 107 ~Y~tp~gs~gf~~H~D~-~dvfvlQl~G~K~W~l~~p~~~~~~lp~~~~~~~~~~~~~~~~~e~~L~pGDvLYiPrG~~H 185 (339)
.+.-.+|+. .+.|+-+ .+..+.=++|+=++.+-.+ ..+|++||++++|+|.+|
T Consensus 47 ~v~~~~G~~-~~~H~hp~~~~~~~Vl~G~~~~~~~g~-------------------------~~~l~~Gd~i~ip~g~~H 100 (131)
T COG1917 47 LVTFEPGAV-IPWHTHPLGEQTIYVLEGEGTVQLEGE-------------------------KKELKAGDVIIIPPGVVH 100 (131)
T ss_pred EEEECCCcc-cccccCCCcceEEEEEecEEEEEecCC-------------------------ceEecCCCEEEECCCCee
Confidence 333344443 4789997 7889999999998888633 488999999999999999
Q ss_pred eeecCCCcceeeeeecc
Q psy13797 186 QASTVTNEHSLHVTISV 202 (339)
Q Consensus 186 ~a~s~~~~~SlhlT~~~ 202 (339)
...+.+++...+|.+..
T Consensus 101 ~~~a~~~~~~~~l~v~~ 117 (131)
T COG1917 101 GLKAVEDEPMVLLLVFP 117 (131)
T ss_pred eeccCCCCceeEEEEee
Confidence 99998655446666653
No 13
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=96.54 E-value=0.0037 Score=46.26 Aligned_cols=56 Identities=34% Similarity=0.557 Sum_probs=44.8
Q ss_pred CCCCCCCCcccCCC-cEEEEEEeEEEEEEeCCCCCCCCCCCCCCCCCCCCcCCCCcEEEEEcCCCeeeeCCCceeeeecC
Q psy13797 112 PTAQGFAPHYDDIE-AFILQLEGKKKWKVYLPRMVDEYLPRYSSPNFSQEEIGTPILTVTLEPGDLLYLPRGYIHQASTV 190 (339)
Q Consensus 112 ~gs~gf~~H~D~~d-vfvlQl~G~K~W~l~~p~~~~~~lp~~~~~~~~~~~~~~~~~e~~L~pGDvLYiPrG~~H~a~s~ 190 (339)
+|+ ..++|..... .++.=++|+-...+- . ....|+|||.+|+|+|.+|...+.
T Consensus 7 pG~-~~~~h~H~~~~e~~~vl~G~~~~~~~-~------------------------~~~~l~~Gd~~~i~~~~~H~~~n~ 60 (71)
T PF07883_consen 7 PGG-SIPPHRHPGEDEFFYVLSGEGTLTVD-G------------------------ERVELKPGDAIYIPPGVPHQVRNP 60 (71)
T ss_dssp TTE-EEEEEEESSEEEEEEEEESEEEEEET-T------------------------EEEEEETTEEEEEETTSEEEEEEE
T ss_pred CCC-CCCCEECCCCCEEEEEEECCEEEEEc-c------------------------EEeEccCCEEEEECCCCeEEEEEC
Confidence 444 4578997776 899999999887742 1 169999999999999999999998
Q ss_pred CCc
Q psy13797 191 TNE 193 (339)
Q Consensus 191 ~~~ 193 (339)
+++
T Consensus 61 ~~~ 63 (71)
T PF07883_consen 61 GDE 63 (71)
T ss_dssp SSS
T ss_pred CCC
Confidence 654
No 14
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=96.47 E-value=0.015 Score=49.21 Aligned_cols=59 Identities=22% Similarity=0.303 Sum_probs=44.4
Q ss_pred EEeCCCCCCCCCCcccCCCcEEEEEEeEEEEEEeCCCCCCCCCCCCCCCCCCCCcCCCCcEEEEEcCCCeeeeCCCceee
Q psy13797 107 TYQTPPTAQGFAPHYDDIEAFILQLEGKKKWKVYLPRMVDEYLPRYSSPNFSQEEIGTPILTVTLEPGDLLYLPRGYIHQ 186 (339)
Q Consensus 107 ~Y~tp~gs~gf~~H~D~~dvfvlQl~G~K~W~l~~p~~~~~~lp~~~~~~~~~~~~~~~~~e~~L~pGDvLYiPrG~~H~ 186 (339)
+.+-|++..++..|++ .|-+.+=++|+=.+.+-. .++.|++||++|||+|.+|.
T Consensus 41 ~~v~pg~~~~~~~H~~-~dE~~~Vl~G~g~v~~~~-------------------------~~~~v~~gd~~~iP~g~~H~ 94 (127)
T COG0662 41 ILVKPGEEISLHHHHH-RDEHWYVLEGTGKVTIGG-------------------------EEVEVKAGDSVYIPAGTPHR 94 (127)
T ss_pred EEECCCcccCcccccC-cceEEEEEeeEEEEEECC-------------------------EEEEecCCCEEEECCCCcEE
Confidence 4445555557888888 555555677777776631 26999999999999999999
Q ss_pred eecCC
Q psy13797 187 ASTVT 191 (339)
Q Consensus 187 a~s~~ 191 (339)
.++..
T Consensus 95 ~~N~G 99 (127)
T COG0662 95 VRNTG 99 (127)
T ss_pred EEcCC
Confidence 99974
No 15
>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....
Probab=96.24 E-value=0.0077 Score=51.72 Aligned_cols=65 Identities=25% Similarity=0.362 Sum_probs=45.1
Q ss_pred CCCCCCCCCCcccCCCcEEEEEEeEEEEEEeCCCCCCCCCCCCCCCCCCCCcCCCCcEEEE--EcCCCeeeeCCCceeee
Q psy13797 110 TPPTAQGFAPHYDDIEAFILQLEGKKKWKVYLPRMVDEYLPRYSSPNFSQEEIGTPILTVT--LEPGDLLYLPRGYIHQA 187 (339)
Q Consensus 110 tp~gs~gf~~H~D~~dvfvlQl~G~K~W~l~~p~~~~~~lp~~~~~~~~~~~~~~~~~e~~--L~pGDvLYiPrG~~H~a 187 (339)
.|++- +.|||-..+-++.=++|+=+..+..|.... . .......+ |++||+++||+|++|+.
T Consensus 42 ~pg~~--~~Ph~h~a~~i~~V~~G~~~~~~v~~~~~~-------------~--~~~~~~~~v~l~~Gdv~~vP~G~~h~~ 104 (144)
T PF00190_consen 42 EPGGL--RAPHYHNADEIVYVIEGRGRVGVVGPGGPQ-------------E--EFRDFSQKVRLKAGDVFVVPAGHPHWI 104 (144)
T ss_dssp ETTEE--EEEEEESSEEEEEEEESEEEEEEEETTCSS-------------S--EEEEEEEEEEEETTEEEEE-TT-EEEE
T ss_pred hcCCc--cceeEeeeeEEeeeeccceEEEEEecCCcc-------------c--cceeeeceeeeecccceeeccceeEEE
Confidence 45443 579999777788889998887777764311 0 01122344 99999999999999999
Q ss_pred ecCC
Q psy13797 188 STVT 191 (339)
Q Consensus 188 ~s~~ 191 (339)
.+.+
T Consensus 105 ~n~~ 108 (144)
T PF00190_consen 105 INDG 108 (144)
T ss_dssp EECS
T ss_pred EcCC
Confidence 9985
No 16
>COG4101 Predicted mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=96.00 E-value=0.02 Score=48.28 Aligned_cols=70 Identities=27% Similarity=0.339 Sum_probs=48.6
Q ss_pred EEeCCCCCCCCCCcccCCCcEEEEEEeEEEEEEeCCCCCCCCCCCCCCCCCCCCcCCCCcEEEEEcCCCeeeeCCCceee
Q psy13797 107 TYQTPPTAQGFAPHYDDIEAFILQLEGKKKWKVYLPRMVDEYLPRYSSPNFSQEEIGTPILTVTLEPGDLLYLPRGYIHQ 186 (339)
Q Consensus 107 ~Y~tp~gs~gf~~H~D~~dvfvlQl~G~K~W~l~~p~~~~~~lp~~~~~~~~~~~~~~~~~e~~L~pGDvLYiPrG~~H~ 186 (339)
+---++|+.+=+-|.-.++..|--+.|+-+-+...- | ....+..|||++|||+|..|+
T Consensus 50 ~vTi~pgAkakaH~H~~hEtaIYvlsG~ah~w~G~r------L----------------E~ha~~~pGDf~YiPpgVPHq 107 (142)
T COG4101 50 LVTIPPGAKAKAHLHEEHETAIYVLSGEAHTWYGNR------L----------------EEHAEVGPGDFFYIPPGVPHQ 107 (142)
T ss_pred EEeeCCCccccccccccccEEEEEEeceeeeeeccc------e----------------eeeEEecCCCeEEcCCCCCCc
Confidence 333467777633444577888888999887554322 1 125888999999999999999
Q ss_pred eecCCCcceeee
Q psy13797 187 ASTVTNEHSLHV 198 (339)
Q Consensus 187 a~s~~~~~Slhl 198 (339)
-...+++.+.-+
T Consensus 108 p~N~S~ep~s~v 119 (142)
T COG4101 108 PANLSTEPLSAV 119 (142)
T ss_pred ccccCCCCeEEE
Confidence 988865544333
No 17
>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]
Probab=95.63 E-value=0.083 Score=48.70 Aligned_cols=69 Identities=26% Similarity=0.507 Sum_probs=54.1
Q ss_pred ccceEEeCCCCCCCCCCcccCC-Cc--EEEEEEeEEEEEEeCCCCCCCCCCCCCCCCCCCCcCCCCcEEEEEcCCCeeee
Q psy13797 103 VGANTYQTPPTAQGFAPHYDDI-EA--FILQLEGKKKWKVYLPRMVDEYLPRYSSPNFSQEEIGTPILTVTLEPGDLLYL 179 (339)
Q Consensus 103 v~~n~Y~tp~gs~gf~~H~D~~-dv--fvlQl~G~K~W~l~~p~~~~~~lp~~~~~~~~~~~~~~~~~e~~L~pGDvLYi 179 (339)
+|+-..++++.... .||-.. |= +..=+.|+=+..|..+.- + ...+.+++||++||
T Consensus 81 ~g~e~~~t~G~~~~--~H~Hp~ade~E~y~vi~G~g~m~v~~~~G-------------------~-~~v~~~~~Gd~iyV 138 (209)
T COG2140 81 AGAEVFKTPGAMRE--LHYHPNADEPEIYYVLKGEGRMLVQKPEG-------------------E-ARVIAVRAGDVIYV 138 (209)
T ss_pred cceEEEecCCcccc--cccCCCCCcccEEEEEeccEEEEEEcCCC-------------------c-EEEEEecCCcEEEe
Confidence 66667889987765 688855 33 566688999999988741 1 34788999999999
Q ss_pred CCCceeeeecCCCc
Q psy13797 180 PRGYIHQASTVTNE 193 (339)
Q Consensus 180 PrG~~H~a~s~~~~ 193 (339)
|++|.|.....+++
T Consensus 139 Pp~~gH~t~N~Gd~ 152 (209)
T COG2140 139 PPGYGHYTINTGDE 152 (209)
T ss_pred CCCcceEeecCCCC
Confidence 99999999998654
No 18
>KOG1633|consensus
Probab=95.33 E-value=0.022 Score=61.68 Aligned_cols=84 Identities=23% Similarity=0.277 Sum_probs=58.8
Q ss_pred eCCCCCCCCCCcccCCCcEEE--EEEeEEEEEEeCCCCCCCCCCCCC--CCCCCCCc-----CCCCcEEEEEcCCCeeee
Q psy13797 109 QTPPTAQGFAPHYDDIEAFIL--QLEGKKKWKVYLPRMVDEYLPRYS--SPNFSQEE-----IGTPILTVTLEPGDLLYL 179 (339)
Q Consensus 109 ~tp~gs~gf~~H~D~~dvfvl--Ql~G~K~W~l~~p~~~~~~lp~~~--~~~~~~~~-----~~~~~~e~~L~pGDvLYi 179 (339)
++-.++.+ ..|.|.-.-++. =+.|.|...+-.|... .+..+. .....+.+ ....++.+.|++|+.|+|
T Consensus 132 msv~~~Yt-dfhidfggtsvwyhil~G~K~f~lI~pt~~--nl~~ye~w~~s~~q~~~ffGd~VdkC~~~~l~~g~T~~i 208 (776)
T KOG1633|consen 132 MSVKDSYT-DFHIDFGGTSVWYHILAGEKTFYLIPPTCE--NLELYECWESSTPQDEIFFGDCVDKCYKCILKQGQTLFI 208 (776)
T ss_pred eecccccc-ccccCCCCcchhhhhhccccceeeeCCccc--chhhhhhhhhcccccccccCCccceeEEEEeccCceEec
Confidence 34555655 678887655444 4899999999988754 333331 11122222 246789999999999999
Q ss_pred CCCceeeeecCCCcce
Q psy13797 180 PRGYIHQASTVTNEHS 195 (339)
Q Consensus 180 PrG~~H~a~s~~~~~S 195 (339)
|.||+|.+.+..++..
T Consensus 209 PsGwIhAV~Tp~d~l~ 224 (776)
T KOG1633|consen 209 PSGWIHAVLTPTDCLV 224 (776)
T ss_pred ccceeEeeecCcchhe
Confidence 9999999999877633
No 19
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=94.91 E-value=0.45 Score=47.55 Aligned_cols=90 Identities=16% Similarity=0.253 Sum_probs=61.0
Q ss_pred hhccccceeecCCcCCCchHHHHHHHHHHHhcCcccceEEeCCCCCCCCCCcccCC-CcEEEEEEeEEEEEEeCCCCCCC
Q psy13797 69 HYREGCSIRFLNPQTYIKPLQQLNASLQELFGCFVGANTYQTPPTAQGFAPHYDDI-EAFILQLEGKKKWKVYLPRMVDE 147 (339)
Q Consensus 69 ~~~~G~tl~l~~~~~~~~~l~~~~~~Le~~~g~~v~~n~Y~tp~gs~gf~~H~D~~-dvfvlQl~G~K~W~l~~p~~~~~ 147 (339)
....|-++++..+.. +|.+. .+..+.+-+.|++. ..+|+-.. +=++.=++|+=+..+..+..
T Consensus 224 ~~~~gG~~~~~~~~~-~p~~~-----------~~s~~~~~l~PG~~--~~~H~H~~~~E~~yvl~G~~~~~v~d~~g--- 286 (367)
T TIGR03404 224 KQVPGGTVRIADSTN-FPVSK-----------TIAAAIVTVEPGAM--RELHWHPNADEWQYFIQGQARMTVFAAGG--- 286 (367)
T ss_pred eecCCceEEEEChhh-ccCcc-----------eEEEEEEEECCCCc--cCCeeCcCCCeEEEEEEEEEEEEEEecCC---
Confidence 345666776665543 23211 13345566777775 46899764 45777788888888886632
Q ss_pred CCCCCCCCCCCCCcCCCCcEEEEEcCCCeeeeCCCceeeeecCCC
Q psy13797 148 YLPRYSSPNFSQEEIGTPILTVTLEPGDLLYLPRGYIHQASTVTN 192 (339)
Q Consensus 148 ~lp~~~~~~~~~~~~~~~~~e~~L~pGDvLYiPrG~~H~a~s~~~ 192 (339)
...++.|++||++|||+|..|..+..++
T Consensus 287 -----------------~~~~~~l~~GD~~~iP~g~~H~i~N~G~ 314 (367)
T TIGR03404 287 -----------------NARTFDYQAGDVGYVPRNMGHYVENTGD 314 (367)
T ss_pred -----------------cEEEEEECCCCEEEECCCCeEEEEECCC
Confidence 1236789999999999999999998753
No 20
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=94.51 E-value=0.63 Score=46.55 Aligned_cols=69 Identities=19% Similarity=0.267 Sum_probs=52.3
Q ss_pred cccceEEeCCCCCCCCCCcccCCCcEEEEEEeEEEEEEeCCCCCCCCCCCCCCCCCCCCcCCCCcEEEEEcCCCeeeeCC
Q psy13797 102 FVGANTYQTPPTAQGFAPHYDDIEAFILQLEGKKKWKVYLPRMVDEYLPRYSSPNFSQEEIGTPILTVTLEPGDLLYLPR 181 (339)
Q Consensus 102 ~v~~n~Y~tp~gs~gf~~H~D~~dvfvlQl~G~K~W~l~~p~~~~~~lp~~~~~~~~~~~~~~~~~e~~L~pGDvLYiPr 181 (339)
+..+++.+.|++.. .+|+-..+-++.=++|+=+..+..... ..+..+|++||++|||+
T Consensus 67 ls~~~~~l~pG~~~--~~HwH~~~E~~yVl~G~~~v~~~d~~g--------------------~~~~~~L~~GD~~~fP~ 124 (367)
T TIGR03404 67 IAGVNMRLEPGAIR--ELHWHKEAEWAYVLYGSCRITAVDENG--------------------RNYIDDVGAGDLWYFPP 124 (367)
T ss_pred ccceEEEEcCCCCC--CcccCCCceEEEEEeeEEEEEEEcCCC--------------------cEEEeEECCCCEEEECC
Confidence 34556778877753 688876667899999999988875421 12234799999999999
Q ss_pred CceeeeecCCC
Q psy13797 182 GYIHQASTVTN 192 (339)
Q Consensus 182 G~~H~a~s~~~ 192 (339)
|.+|..++.++
T Consensus 125 g~~H~~~n~~~ 135 (367)
T TIGR03404 125 GIPHSLQGLDE 135 (367)
T ss_pred CCeEEEEECCC
Confidence 99999998743
No 21
>PF06052 3-HAO: 3-hydroxyanthranilic acid dioxygenase; InterPro: IPR010329 Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase (1.13.11.6 from EC). It is part of the kynurenine pathway for the degradation of tryptophan and the biosynthesis of nicotinic acid [].The prokaryotic homologue is involved in the 2-nitrobenzoate degradation pathway []. The enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.; GO: 0000334 3-hydroxyanthranilate 3,4-dioxygenase activity, 0005506 iron ion binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 1ZVF_A 1YFX_A 1YFW_A 1YFY_A 1YFU_A 2QNK_A 3FE5_A.
Probab=94.42 E-value=0.14 Score=44.86 Aligned_cols=70 Identities=20% Similarity=0.351 Sum_probs=47.4
Q ss_pred EEeCCCCCCCCCCcccCCCcEEEEEEeEEEEEEeCCCCCCCCCCCCCCCCCCCCcCCCCcEEEEEcCCCeeeeCCCceee
Q psy13797 107 TYQTPPTAQGFAPHYDDIEAFILQLEGKKKWKVYLPRMVDEYLPRYSSPNFSQEEIGTPILTVTLEPGDLLYLPRGYIHQ 186 (339)
Q Consensus 107 ~Y~tp~gs~gf~~H~D~~dvfvlQl~G~K~W~l~~p~~~~~~lp~~~~~~~~~~~~~~~~~e~~L~pGDvLYiPrG~~H~ 186 (339)
+.++.|+... ..|+|..+-|.-|+.|.=.-++.... ...+++++.||+.++|++..|.
T Consensus 37 mvVGGPN~R~-DyHine~eE~FyQ~kG~m~Lkv~e~g---------------------~~kdi~I~EGe~fLLP~~vpHs 94 (151)
T PF06052_consen 37 MVVGGPNQRT-DYHINETEEFFYQLKGDMCLKVVEDG---------------------KFKDIPIREGEMFLLPANVPHS 94 (151)
T ss_dssp EEEESSB--S-SEEE-SS-EEEEEEES-EEEEEEETT---------------------EEEEEEE-TTEEEEE-TT--EE
T ss_pred EEEcCCCCCC-ccccCCcceEEEEEeCcEEEEEEeCC---------------------ceEEEEeCCCcEEecCCCCCCC
Confidence 5677777776 78999999999999999988887652 1238999999999999999999
Q ss_pred eecCCCcceeeeee
Q psy13797 187 ASTVTNEHSLHVTI 200 (339)
Q Consensus 187 a~s~~~~~SlhlT~ 200 (339)
.+-.++ |+.|-|
T Consensus 95 P~R~~~--tiGLVi 106 (151)
T PF06052_consen 95 PQRPAD--TIGLVI 106 (151)
T ss_dssp EEE-TT---EEEEE
T ss_pred CcCCCC--cEEEEE
Confidence 998754 444444
No 22
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=94.38 E-value=0.58 Score=40.14 Aligned_cols=73 Identities=21% Similarity=0.363 Sum_probs=46.1
Q ss_pred EeCCCCCCCCCCcccC-CCcEEEEEEeEEEEEEeCCCCCCCCCCCCCCCCCCCCcCCCCcEEEEEcCCCeeeeCCCceee
Q psy13797 108 YQTPPTAQGFAPHYDD-IEAFILQLEGKKKWKVYLPRMVDEYLPRYSSPNFSQEEIGTPILTVTLEPGDLLYLPRGYIHQ 186 (339)
Q Consensus 108 Y~tp~gs~gf~~H~D~-~dvfvlQl~G~K~W~l~~p~~~~~~lp~~~~~~~~~~~~~~~~~e~~L~pGDvLYiPrG~~H~ 186 (339)
-+.|++ . +.+|+-. .+-++.=+.|+=...+-.+.. .......+++||+++||+|.+|.
T Consensus 36 ~i~pg~-~-~~~h~H~~~~e~~~Vl~G~~~~~~~~~~~-------------------~~~~~~~l~~GD~~~ip~g~~H~ 94 (146)
T smart00835 36 NLEPGG-M-LPPHYHPRATELLYVVRGEGRVGVVDPNG-------------------NKVYDARLREGDVFVVPQGHPHF 94 (146)
T ss_pred EecCCc-C-cCCeeCCCCCEEEEEEeCeEEEEEEeCCC-------------------CeEEEEEecCCCEEEECCCCEEE
Confidence 344444 3 4688853 455555677775555544311 12347899999999999999999
Q ss_pred eecCCCcceeeeeec
Q psy13797 187 ASTVTNEHSLHVTIS 201 (339)
Q Consensus 187 a~s~~~~~SlhlT~~ 201 (339)
..+.+++...-+.++
T Consensus 95 ~~n~~~~~~~~l~~~ 109 (146)
T smart00835 95 QVNSGDENLEFVAFN 109 (146)
T ss_pred EEcCCCCCEEEEEEe
Confidence 988754433333343
No 23
>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC. The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.
Probab=94.24 E-value=0.16 Score=41.12 Aligned_cols=52 Identities=31% Similarity=0.533 Sum_probs=37.8
Q ss_pred CCCCcccCCCcEEEEEEeEEEEEEeCCCCCCCCCCCCCCCCCCCCcCCCCcEEEEEcCCCeeeeCCCceeeeecCCC
Q psy13797 116 GFAPHYDDIEAFILQLEGKKKWKVYLPRMVDEYLPRYSSPNFSQEEIGTPILTVTLEPGDLLYLPRGYIHQASTVTN 192 (339)
Q Consensus 116 gf~~H~D~~dvfvlQl~G~K~W~l~~p~~~~~~lp~~~~~~~~~~~~~~~~~e~~L~pGDvLYiPrG~~H~a~s~~~ 192 (339)
.+++|+-+.-.|++.+.|+-.+.+-.. +..++|||++++|+|..|...+.++
T Consensus 15 ~~~~h~h~~~~i~~v~~G~~~~~~~~~-------------------------~~~l~~g~~~li~p~~~H~~~~~~~ 66 (136)
T PF02311_consen 15 EFPPHWHDFYEIIYVLSGEGTLHIDGQ-------------------------EYPLKPGDLFLIPPGQPHSYYPDSN 66 (136)
T ss_dssp SEEEETT-SEEEEEEEEE-EEEEETTE-------------------------EEEE-TT-EEEE-TTS-EEEEE-TT
T ss_pred ccCCEECCCEEEEEEeCCEEEEEECCE-------------------------EEEEECCEEEEecCCccEEEecCCC
Confidence 467898888889999999998876322 6999999999999999999999763
No 24
>PRK15457 ethanolamine utilization protein EutQ; Provisional
Probab=93.67 E-value=0.29 Score=45.89 Aligned_cols=48 Identities=23% Similarity=0.250 Sum_probs=34.2
Q ss_pred CCCCcccCCCcEEEEEEeEEEEEEeCCCCCCCCCCCCCCCCCCCCcCCCCcEEEEEcCCCeeeeCCCceeeeec
Q psy13797 116 GFAPHYDDIEAFILQLEGKKKWKVYLPRMVDEYLPRYSSPNFSQEEIGTPILTVTLEPGDLLYLPRGYIHQAST 189 (339)
Q Consensus 116 gf~~H~D~~dvfvlQl~G~K~W~l~~p~~~~~~lp~~~~~~~~~~~~~~~~~e~~L~pGDvLYiPrG~~H~a~s 189 (339)
.|+.|++..+. +.=++|+=+..+.. .+++++|||++|||+|..|+-.+
T Consensus 168 sf~wtl~~dEi-~YVLEGe~~l~IdG-------------------------~t~~l~pGDvlfIPkGs~~hf~t 215 (233)
T PRK15457 168 FFPWTLNYDEI-DMVLEGELHVRHEG-------------------------ETMIAKAGDVMFIPKGSSIEFGT 215 (233)
T ss_pred ccceeccceEE-EEEEEeEEEEEECC-------------------------EEEEeCCCcEEEECCCCeEEecC
Confidence 46666665544 44467877777732 26999999999999999955444
No 25
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=93.60 E-value=0.63 Score=42.43 Aligned_cols=56 Identities=21% Similarity=0.398 Sum_probs=39.0
Q ss_pred CCcccCC---CcEEEEEEeEEEEEEeCCCCCCCCCCCCCCCCCCCCcCCCCcEEEEEcCCCeeeeCCCceeeeecCCCc
Q psy13797 118 APHYDDI---EAFILQLEGKKKWKVYLPRMVDEYLPRYSSPNFSQEEIGTPILTVTLEPGDLLYLPRGYIHQASTVTNE 193 (339)
Q Consensus 118 ~~H~D~~---dvfvlQl~G~K~W~l~~p~~~~~~lp~~~~~~~~~~~~~~~~~e~~L~pGDvLYiPrG~~H~a~s~~~~ 193 (339)
..||-.+ +=+..=++|+-...+-... ..+..+.++|||++|||+|+.|...+.+++
T Consensus 88 ~gH~H~~~~~~EiyyvlsG~g~~~l~~~~--------------------G~~~~~~v~pGd~v~IPpg~~H~~iN~G~e 146 (191)
T PRK04190 88 KGHFHAKADRAEIYYGLKGKGLMLLQDPE--------------------GEARWIEMEPGTVVYVPPYWAHRSVNTGDE 146 (191)
T ss_pred CCeEcCCCCCCEEEEEEeCEEEEEEecCC--------------------CcEEEEEECCCCEEEECCCCcEEeEECCCC
Confidence 3466532 2345557787777774331 014578999999999999999999987644
No 26
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=91.09 E-value=0.94 Score=38.41 Aligned_cols=51 Identities=16% Similarity=0.178 Sum_probs=39.3
Q ss_pred CCCcccCCCcEEEEEEeEEEEE-EeCCCCCCCCCCCCCCCCCCCCcCCCCcEEEEEcCCCeeeeCCCceeeeecCC
Q psy13797 117 FAPHYDDIEAFILQLEGKKKWK-VYLPRMVDEYLPRYSSPNFSQEEIGTPILTVTLEPGDLLYLPRGYIHQASTVT 191 (339)
Q Consensus 117 f~~H~D~~dvfvlQl~G~K~W~-l~~p~~~~~~lp~~~~~~~~~~~~~~~~~e~~L~pGDvLYiPrG~~H~a~s~~ 191 (339)
.+.|+-.++-++.=++|+=... +... .+..|+|||.+|+|++..|..++.+
T Consensus 48 ~~~h~h~~~E~~yVL~G~~~~~~i~~g------------------------~~~~L~aGD~i~~~~~~~H~~~N~e 99 (125)
T PRK13290 48 THLHYKNHLEAVYCIEGEGEVEDLATG------------------------EVHPIRPGTMYALDKHDRHYLRAGE 99 (125)
T ss_pred ccceeCCCEEEEEEEeCEEEEEEcCCC------------------------EEEEeCCCeEEEECCCCcEEEEcCC
Confidence 3567765555888888887776 4222 2689999999999999999999973
No 27
>PF05523 FdtA: WxcM-like, C-terminal ; InterPro: IPR008894 This entry includes FdtA (Q6T1W8 from SWISSPROT) from Aneurinibacillus thermoaerophilus, which has been characterised as a dTDP-6-deoxy-3,4-keto-hexulose isomerase []. It also includes WxcM (Q93S92 from SWISSPROT) from Xanthomonas campestris pv campestris) []. ; PDB: 2PAK_A 2PAE_A 2PA7_B 2PAM_A.
Probab=90.92 E-value=0.62 Score=39.72 Aligned_cols=71 Identities=23% Similarity=0.352 Sum_probs=38.2
Q ss_pred EeCCCCC-CCCCCcccCC-CcEEEEEEeEEEEEEeCCCCCCCCCCCCCCCCCCCCcCCCCcEEEEEcCCC-eeeeCCCce
Q psy13797 108 YQTPPTA-QGFAPHYDDI-EAFILQLEGKKKWKVYLPRMVDEYLPRYSSPNFSQEEIGTPILTVTLEPGD-LLYLPRGYI 184 (339)
Q Consensus 108 Y~tp~gs-~gf~~H~D~~-dvfvlQl~G~K~W~l~~p~~~~~~lp~~~~~~~~~~~~~~~~~e~~L~pGD-vLYiPrG~~ 184 (339)
|-+|+|. .| .|+-.. .-+++=+.|+=...+..... ..+++|...+ .||||+|+|
T Consensus 38 ~~~~~~~~RG--~H~Hk~~~~~~~~l~Gs~~v~~~d~~~---------------------~~~~~L~~~~~~L~Ippg~w 94 (131)
T PF05523_consen 38 YNVPPGVIRG--WHAHKKTTQWFIVLSGSFKVVLDDGRE---------------------EEEFILDEPNKGLYIPPGVW 94 (131)
T ss_dssp ES--SS--EE--EEEESS--EEEEEEES-EEEEEE-SS----------------------EEEEEE--TTEEEEE-TT-E
T ss_pred EcCCCCCccc--ccccccccEEEEEEeCEEEEEEecCCC---------------------cEEEEECCCCeEEEECCchh
Confidence 3366665 56 455533 34566789999988765521 1467777665 899999999
Q ss_pred eeeecCCCcceeeeeecc
Q psy13797 185 HQASTVTNEHSLHVTISV 202 (339)
Q Consensus 185 H~a~s~~~~~SlhlT~~~ 202 (339)
|.....+.. |+=|.++-
T Consensus 95 ~~~~~~s~~-svlLv~as 111 (131)
T PF05523_consen 95 HGIKNFSED-SVLLVLAS 111 (131)
T ss_dssp EEEE---TT--EEEEEES
T ss_pred hHhhccCCC-cEEEEEcC
Confidence 999887644 66666664
No 28
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=90.73 E-value=0.73 Score=43.81 Aligned_cols=60 Identities=13% Similarity=0.165 Sum_probs=41.6
Q ss_pred EEeCCCCCCCC-CCcccCCCcEEEEEEeEEEEEEeCCCCCCCCCCCCCCCCCCCCcCCCCcEEEEEcCCCeeeeCCCcee
Q psy13797 107 TYQTPPTAQGF-APHYDDIEAFILQLEGKKKWKVYLPRMVDEYLPRYSSPNFSQEEIGTPILTVTLEPGDLLYLPRGYIH 185 (339)
Q Consensus 107 ~Y~tp~gs~gf-~~H~D~~dvfvlQl~G~K~W~l~~p~~~~~~lp~~~~~~~~~~~~~~~~~e~~L~pGDvLYiPrG~~H 185 (339)
+-+-|+++.++ -.|++.+..+|++-.|.= ++ -...+.+++||++|||+|..|
T Consensus 184 ~~~~PG~~~~~~~~H~~eh~~yiL~G~G~~--~~-------------------------~g~~~~V~~GD~i~i~~~~~h 236 (260)
T TIGR03214 184 LSFEPGASHPYIETHVMEHGLYVLEGKGVY--NL-------------------------DNNWVPVEAGDYIWMGAYCPQ 236 (260)
T ss_pred EEECCCcccCCcccccceeEEEEEeceEEE--EE-------------------------CCEEEEecCCCEEEECCCCCE
Confidence 44556666654 446666677777766632 22 122688999999999999999
Q ss_pred eeecCCCc
Q psy13797 186 QASTVTNE 193 (339)
Q Consensus 186 ~a~s~~~~ 193 (339)
+..+..++
T Consensus 237 ~~~~~G~~ 244 (260)
T TIGR03214 237 ACYAGGRG 244 (260)
T ss_pred EEEecCCC
Confidence 99997543
No 29
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional
Probab=89.42 E-value=2.1 Score=38.15 Aligned_cols=27 Identities=19% Similarity=0.175 Sum_probs=23.6
Q ss_pred EEEEcCCCeeeeCCCceeeeecCCCcc
Q psy13797 168 TVTLEPGDLLYLPRGYIHQASTVTNEH 194 (339)
Q Consensus 168 e~~L~pGDvLYiPrG~~H~a~s~~~~~ 194 (339)
++.|++||.+|+|.+..|...+.+++.
T Consensus 147 ~~~l~~Gd~~~~~~~~~H~~~n~~~~~ 173 (185)
T PRK09943 147 DYHLVAGQSYAINTGIPHSFSNTSAGI 173 (185)
T ss_pred EEEecCCCEEEEcCCCCeeeeCCCCCC
Confidence 689999999999999999999875443
No 30
>PF06560 GPI: Glucose-6-phosphate isomerase (GPI); InterPro: IPR010551 This entry consists of several bacterial and archaeal glucose-6-phosphate isomerase (GPI) proteins (5.3.1.9 from EC), which are involved in glycolysis and in gluconeogenesis and catalyse the conversion of D-glucose 6-phosphate to D-fructose 6-phosphate. The deduced amino acid sequence of the first archaeal PGI isolated from Pyrococcus furiosus revealed that it is not related to its eukaryotic and many of its bacterial counterparts. In contrast, this archaeal PGI shares similarity with the cupin superfamily that consists of a variety of proteins that are generally involved in sugar metabolism in both prokaryotes and eukaryotes [].; GO: 0004347 glucose-6-phosphate isomerase activity, 0006094 gluconeogenesis, 0006096 glycolysis, 0005737 cytoplasm; PDB: 1J3Q_B 1J3R_B 1J3P_A 2GC0_A 1X8E_A 1X82_A 1QY4_B 2GC2_B 1QXJ_A 1QXR_B ....
Probab=88.37 E-value=0.42 Score=43.30 Aligned_cols=29 Identities=34% Similarity=0.850 Sum_probs=20.7
Q ss_pred CcEEEEEcCCCeeeeCCCceeeeecCCCc
Q psy13797 165 PILTVTLEPGDLLYLPRGYIHQASTVTNE 193 (339)
Q Consensus 165 ~~~e~~L~pGDvLYiPrG~~H~a~s~~~~ 193 (339)
.+.-+.++|||++|||+||.|.....+++
T Consensus 108 ~~~~v~~~~G~~v~IPp~yaH~tIN~g~~ 136 (182)
T PF06560_consen 108 DVIAVEAKPGDVVYIPPGYAHRTINTGDE 136 (182)
T ss_dssp -EEEEEE-TTEEEEE-TT-EEEEEE-SSS
T ss_pred eEEEEEeCCCCEEEECCCceEEEEECCCC
Confidence 35668899999999999999999997543
No 31
>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein []. The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see IPR005836 from INTERPRO).; GO: 0016779 nucleotidyltransferase activity, 0005976 polysaccharide metabolic process
Probab=88.18 E-value=2 Score=37.70 Aligned_cols=25 Identities=36% Similarity=0.602 Sum_probs=22.6
Q ss_pred EEEEEcCCCeeeeCCCceeeeecCC
Q psy13797 167 LTVTLEPGDLLYLPRGYIHQASTVT 191 (339)
Q Consensus 167 ~e~~L~pGDvLYiPrG~~H~a~s~~ 191 (339)
....|.+||.+|||+|..|...+.+
T Consensus 102 ~~~~~~~g~sv~Ip~g~~H~i~n~g 126 (151)
T PF01050_consen 102 EEFTLKEGDSVYIPRGAKHRIENPG 126 (151)
T ss_pred EEEEEcCCCEEEECCCCEEEEECCC
Confidence 3688999999999999999999864
No 32
>PRK13502 transcriptional activator RhaR; Provisional
Probab=88.15 E-value=2.4 Score=39.72 Aligned_cols=51 Identities=20% Similarity=0.303 Sum_probs=40.7
Q ss_pred CCCCcccCCCcEEEEEEeEEEEEEeCCCCCCCCCCCCCCCCCCCCcCCCCcEEEEEcCCCeeeeCCCceeeeecCC
Q psy13797 116 GFAPHYDDIEAFILQLEGKKKWKVYLPRMVDEYLPRYSSPNFSQEEIGTPILTVTLEPGDLLYLPRGYIHQASTVT 191 (339)
Q Consensus 116 gf~~H~D~~dvfvlQl~G~K~W~l~~p~~~~~~lp~~~~~~~~~~~~~~~~~e~~L~pGDvLYiPrG~~H~a~s~~ 191 (339)
.+++|+.++-.+++...|+-...+-. ..+.++|||+++||+|.+|.....+
T Consensus 30 ~~~~H~h~~~~l~~v~~G~~~~~i~~-------------------------~~~~l~~g~l~li~~~~~H~~~~~~ 80 (282)
T PRK13502 30 VFAEHTHEFCELVMVWRGNGLHVLNE-------------------------RPYRITRGDLFYIRAEDKHSYTSVN 80 (282)
T ss_pred CCCccccceEEEEEEecCcEEEEECC-------------------------EEEeecCCcEEEECCCCcccccccC
Confidence 46789988888888999986655422 2588999999999999999887654
No 33
>smart00558 JmjC A domain family that is part of the cupin metalloenzyme superfamily. Probable enzymes, but of unknown functions, that regulate chromatin reorganisation processes (Clissold and Ponting, in press).
Probab=87.99 E-value=0.45 Score=34.15 Aligned_cols=28 Identities=21% Similarity=0.241 Sum_probs=23.0
Q ss_pred ceEEeCCCCCCCCCCcccCCC--cEEEEEEe
Q psy13797 105 ANTYQTPPTAQGFAPHYDDIE--AFILQLEG 133 (339)
Q Consensus 105 ~n~Y~tp~gs~gf~~H~D~~d--vfvlQl~G 133 (339)
.++|+++.++. ++.|+|+++ ++.+|..|
T Consensus 28 ~~~~~G~~~s~-t~~H~d~~~~~n~~~~~~~ 57 (57)
T smart00558 28 PYLYMGMAGSV-TPWHIDDYDLVNYLHQGAG 57 (57)
T ss_pred ceEEEeCCCCc-cceeEcCCCeEEEEEecCC
Confidence 56999999884 699999999 77777654
No 34
>PRK13500 transcriptional activator RhaR; Provisional
Probab=87.63 E-value=2.6 Score=40.62 Aligned_cols=51 Identities=22% Similarity=0.311 Sum_probs=41.1
Q ss_pred CCCCcccCCCcEEEEEEeEEEEEEeCCCCCCCCCCCCCCCCCCCCcCCCCcEEEEEcCCCeeeeCCCceeeeecCC
Q psy13797 116 GFAPHYDDIEAFILQLEGKKKWKVYLPRMVDEYLPRYSSPNFSQEEIGTPILTVTLEPGDLLYLPRGYIHQASTVT 191 (339)
Q Consensus 116 gf~~H~D~~dvfvlQl~G~K~W~l~~p~~~~~~lp~~~~~~~~~~~~~~~~~e~~L~pGDvLYiPrG~~H~a~s~~ 191 (339)
.+++|+.+..-+++-+.|+=.-.+-. ....+.+||+++||+|..|...+.+
T Consensus 60 ~~~~H~H~~~el~~v~~G~g~~~v~~-------------------------~~~~l~~Gdl~~I~~~~~H~~~~~~ 110 (312)
T PRK13500 60 VFAEHTHDFCELVIVWRGNGLHVLND-------------------------RPYRITRGDLFYIHADDKHSYASVN 110 (312)
T ss_pred CCCccccceEEEEEEEcCeEEEEECC-------------------------EEEeecCCeEEEECCCCeecccccC
Confidence 57899988888888888877655422 2588999999999999999987754
No 35
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=87.60 E-value=1.8 Score=42.90 Aligned_cols=62 Identities=21% Similarity=0.288 Sum_probs=46.3
Q ss_pred CCCCCCCCCcccCCCcEEEEEEeEEEEEEeCCCCCCCCCCCCCCCCCCCCcCCCCcEEEEEcCCCeeeeCCCceeeeecC
Q psy13797 111 PPTAQGFAPHYDDIEAFILQLEGKKKWKVYLPRMVDEYLPRYSSPNFSQEEIGTPILTVTLEPGDLLYLPRGYIHQASTV 190 (339)
Q Consensus 111 p~gs~gf~~H~D~~dvfvlQl~G~K~W~l~~p~~~~~~lp~~~~~~~~~~~~~~~~~e~~L~pGDvLYiPrG~~H~a~s~ 190 (339)
++|..+ ++|-.....+-.-++|+-.|.+-.. ..+.+++||++.+|.+.||.=...
T Consensus 89 ~pGe~~-~~HRht~sAl~~vveG~G~~t~V~g------------------------~~~~~~~gD~~~tP~w~wH~H~n~ 143 (335)
T TIGR02272 89 LPGEVA-PSHRHTQSALRFIVEGKGAFTAVDG------------------------ERTTMHPGDFIITPSWTWHDHGNP 143 (335)
T ss_pred CCCCCC-CccccccceEEEEEEcCceEEEECC------------------------EEEeeeCCCEEEeCCCeeEecccC
Confidence 445544 7899988888777888877776433 268999999999999999997765
Q ss_pred CCcceee
Q psy13797 191 TNEHSLH 197 (339)
Q Consensus 191 ~~~~Slh 197 (339)
++..-+.
T Consensus 144 ~d~~~~w 150 (335)
T TIGR02272 144 GDEPMIW 150 (335)
T ss_pred CCCcEEE
Confidence 5554333
No 36
>PRK10296 DNA-binding transcriptional regulator ChbR; Provisional
Probab=87.05 E-value=4.5 Score=37.87 Aligned_cols=59 Identities=27% Similarity=0.329 Sum_probs=43.2
Q ss_pred eEEeCCCCCCCCCCcccCCCcEEEEEEeEEEEEEeCCCCCCCCCCCCCCCCCCCCcCCCCcEEEEEcCCCeeeeCCCcee
Q psy13797 106 NTYQTPPTAQGFAPHYDDIEAFILQLEGKKKWKVYLPRMVDEYLPRYSSPNFSQEEIGTPILTVTLEPGDLLYLPRGYIH 185 (339)
Q Consensus 106 n~Y~tp~gs~gf~~H~D~~dvfvlQl~G~K~W~l~~p~~~~~~lp~~~~~~~~~~~~~~~~~e~~L~pGDvLYiPrG~~H 185 (339)
-+|+........++|+-+.--|++=+.|+-.-.+-. ..+.+.|||+++||+|..|
T Consensus 25 ~~~~~~~~~~~~~~H~H~~~ei~~v~~G~~~~~i~~-------------------------~~~~l~~g~l~~i~p~~~H 79 (278)
T PRK10296 25 HVFIYNKTESVSGLHQHDYYEFTLVLTGRYYQEING-------------------------KRVLLERGDFVFIPLGSHH 79 (278)
T ss_pred EEEEEehhhcCCCCcccccEEEEEEEeceEEEEECC-------------------------EEEEECCCcEEEeCCCCcc
Confidence 445555444445789988777788888887655521 2589999999999999999
Q ss_pred eeec
Q psy13797 186 QAST 189 (339)
Q Consensus 186 ~a~s 189 (339)
....
T Consensus 80 ~~~~ 83 (278)
T PRK10296 80 QSFY 83 (278)
T ss_pred ceee
Confidence 7754
No 37
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=86.83 E-value=3.1 Score=42.81 Aligned_cols=34 Identities=21% Similarity=0.317 Sum_probs=26.5
Q ss_pred EEEEcCCCeeeeCCCceeeeecCCCcceeeeeec
Q psy13797 168 TVTLEPGDLLYLPRGYIHQASTVTNEHSLHVTIS 201 (339)
Q Consensus 168 e~~L~pGDvLYiPrG~~H~a~s~~~~~SlhlT~~ 201 (339)
+..|+|||.+|+|+|..|...+.+++...=|.+.
T Consensus 416 ~~~l~~GDsi~ip~~~~H~~~N~g~~~~~~i~v~ 449 (468)
T TIGR01479 416 TLLLTENESTYIPLGVIHRLENPGKIPLELIEVQ 449 (468)
T ss_pred EEEecCCCEEEECCCCcEEEEcCCCCCEEEEEEE
Confidence 6899999999999999999998765433333443
No 38
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=86.54 E-value=3.7 Score=38.99 Aligned_cols=71 Identities=20% Similarity=0.237 Sum_probs=45.6
Q ss_pred EEeCCCCCCCCCCccc-CCCcEEEEEEeEEEEEEeCCCCCCCCCCCCCCCCCCCCcCCCCcEEEEEcCCCeeeeCCCcee
Q psy13797 107 TYQTPPTAQGFAPHYD-DIEAFILQLEGKKKWKVYLPRMVDEYLPRYSSPNFSQEEIGTPILTVTLEPGDLLYLPRGYIH 185 (339)
Q Consensus 107 ~Y~tp~gs~gf~~H~D-~~dvfvlQl~G~K~W~l~~p~~~~~~lp~~~~~~~~~~~~~~~~~e~~L~pGDvLYiPrG~~H 185 (339)
+.+.|+++.. .+|.+ ..+-|+.=++|+=...+-. ...+|++||.+|+|.|..|
T Consensus 63 v~l~pgg~~~-~~~~~~g~ee~iyVl~G~l~v~~~g-------------------------~~~~L~~Gd~~y~pa~~~H 116 (260)
T TIGR03214 63 VEVHPGGGNT-TGFGGEGIETFLFVISGEVNVTAEG-------------------------ETHELREGGYAYLPPGSKW 116 (260)
T ss_pred EEECCCCcCC-CCCCCCceEEEEEEEeCEEEEEECC-------------------------EEEEECCCCEEEECCCCCE
Confidence 3444544322 23333 4477888888887765421 1589999999999999999
Q ss_pred eeecCCCc-ceeeeeeccc
Q psy13797 186 QASTVTNE-HSLHVTISVY 203 (339)
Q Consensus 186 ~a~s~~~~-~SlhlT~~~~ 203 (339)
...+.+++ ..+.+.-..|
T Consensus 117 ~~~N~~~~~a~~l~v~k~y 135 (260)
T TIGR03214 117 TLANAQAEDARFFLYKKRY 135 (260)
T ss_pred EEEECCCCCEEEEEEEeee
Confidence 99876543 2344434444
No 39
>PRK11171 hypothetical protein; Provisional
Probab=85.30 E-value=5.1 Score=38.18 Aligned_cols=62 Identities=21% Similarity=0.242 Sum_probs=42.8
Q ss_pred EEeCCCCCCCCCCcccCCCcEEEEEEeEEEEEEeCCCCCCCCCCCCCCCCCCCCcCCCCcEEEEEcCCCeeeeCCCceee
Q psy13797 107 TYQTPPTAQGFAPHYDDIEAFILQLEGKKKWKVYLPRMVDEYLPRYSSPNFSQEEIGTPILTVTLEPGDLLYLPRGYIHQ 186 (339)
Q Consensus 107 ~Y~tp~gs~gf~~H~D~~dvfvlQl~G~K~W~l~~p~~~~~~lp~~~~~~~~~~~~~~~~~e~~L~pGDvLYiPrG~~H~ 186 (339)
+-+.|+++.+...|....+-|+.=++|+=.-.+- ..+.+|++||.+|+|++..|.
T Consensus 66 ~~l~PG~~~~~~~h~~~~eE~~~VlsG~l~v~~~-------------------------g~~~~L~~GDsi~~p~~~~H~ 120 (266)
T PRK11171 66 VEVEPGGGSDQPEPDEGAETFLFVVEGEITLTLE-------------------------GKTHALSEGGYAYLPPGSDWT 120 (266)
T ss_pred EEECCCCcCCCCCCCCCceEEEEEEeCEEEEEEC-------------------------CEEEEECCCCEEEECCCCCEE
Confidence 4556665544333433446677778887666552 126899999999999999999
Q ss_pred eecCCCc
Q psy13797 187 ASTVTNE 193 (339)
Q Consensus 187 a~s~~~~ 193 (339)
..+.+++
T Consensus 121 ~~N~g~~ 127 (266)
T PRK11171 121 LRNAGAE 127 (266)
T ss_pred EEECCCC
Confidence 9876543
No 40
>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional
Probab=85.28 E-value=7.3 Score=36.17 Aligned_cols=94 Identities=18% Similarity=0.173 Sum_probs=57.0
Q ss_pred hHHHHHHHHHHHhcC------cccceEEeCCCCCCCCCCcccCCC------cEEEEEEeEEEEEEeCCCCCCCCCCCCCC
Q psy13797 87 PLQQLNASLQELFGC------FVGANTYQTPPTAQGFAPHYDDIE------AFILQLEGKKKWKVYLPRMVDEYLPRYSS 154 (339)
Q Consensus 87 ~l~~~~~~Le~~~g~------~v~~n~Y~tp~gs~gf~~H~D~~d------vfvlQl~G~K~W~l~~p~~~~~~lp~~~~ 154 (339)
.|..+...++...|. .|-+|.|-... +++.|-|..+ +..+=+-....+++....
T Consensus 96 ~l~~L~~~~~~~~~~~~~~p~a~LvN~Y~~G~---~mg~H~D~~E~~~~~pI~SvSLG~~~~F~~~~~~----------- 161 (213)
T PRK15401 96 SFLALAQRAAAAAGFPGFQPDACLINRYAPGA---KLSLHQDKDERDFRAPIVSVSLGLPAVFQFGGLK----------- 161 (213)
T ss_pred HHHHHHHHHHHHcCCCCCCCCEEEEEeccCcC---ccccccCCCcccCCCCEEEEeCCCCeEEEecccC-----------
Confidence 577788777776663 34568887443 6789999532 223333333333332221
Q ss_pred CCCCCCcCCCCcEEEEEcCCCeeeeC---CCceeeeecCCC-------cceeeeeec
Q psy13797 155 PNFSQEEIGTPILTVTLEPGDLLYLP---RGYIHQASTVTN-------EHSLHVTIS 201 (339)
Q Consensus 155 ~~~~~~~~~~~~~e~~L~pGDvLYiP---rG~~H~a~s~~~-------~~SlhlT~~ 201 (339)
...+...+.|++||+|.+= |-|||.+-.... +.-++|||.
T Consensus 162 -------~~~~~~~l~L~~Gdllvm~G~sr~~~HgVp~~~~~~~p~~g~~RINLTFR 211 (213)
T PRK15401 162 -------RSDPLQRILLEHGDVVVWGGPSRLRYHGILPLKAGEHPLTGECRINLTFR 211 (213)
T ss_pred -------CCCceEEEEeCCCCEEEECchHhheeccCCcCCCCcCCCCCCCeEEEEeE
Confidence 1133568999999999984 338888855422 135788875
No 41
>PF04970 LRAT: Lecithin retinol acyltransferase; InterPro: IPR007053 This entry represents a conserved sequence region found in proteins from viruses, bacteria and eukaryotes. It contains a well-conserved NCEHF motif, though its function in these proteins is unknown.; PDB: 2KYT_A 4DOT_A 4FA0_A.
Probab=85.09 E-value=0.5 Score=39.55 Aligned_cols=31 Identities=35% Similarity=0.643 Sum_probs=24.1
Q ss_pred EEEcCCCeeeeCCC-ceeeeecCCCcceeeee
Q psy13797 169 VTLEPGDLLYLPRG-YIHQASTVTNEHSLHVT 199 (339)
Q Consensus 169 ~~L~pGDvLYiPrG-~~H~a~s~~~~~SlhlT 199 (339)
-.|+|||+|+++|+ +.|++...++..-+|++
T Consensus 5 ~~~~~GD~I~~~r~~y~H~gIYvG~~~ViH~~ 36 (125)
T PF04970_consen 5 KRLKPGDHIEVPRGLYEHWGIYVGDGEVIHFS 36 (125)
T ss_dssp -S--TT-EEEEEETTEEEEEEEEETTEEEEEE
T ss_pred cCCCCCCEEEEecCCccEEEEEecCCeEEEec
Confidence 45889999999997 89999999888788888
No 42
>PLN00212 glutelin; Provisional
Probab=84.57 E-value=2.7 Score=43.71 Aligned_cols=57 Identities=19% Similarity=0.430 Sum_probs=42.5
Q ss_pred CCCcccCC-CcEEEEEEeEEEEEEeCCCCCCCCCCCCCCCCCCCCcCCCCcEEEEEcCCCeeeeCCCceeeeecCCC
Q psy13797 117 FAPHYDDI-EAFILQLEGKKKWKVYLPRMVDEYLPRYSSPNFSQEEIGTPILTVTLEPGDLLYLPRGYIHQASTVTN 192 (339)
Q Consensus 117 f~~H~D~~-dvfvlQl~G~K~W~l~~p~~~~~~lp~~~~~~~~~~~~~~~~~e~~L~pGDvLYiPrG~~H~a~s~~~ 192 (339)
++|||-.. .-++.=+.|+=+..+-.+. +...++.+|++|||+.||+|++|...+..+
T Consensus 361 ~~PHwn~nA~eI~yV~rG~g~vqvV~~~-------------------g~~vf~~~L~~GdvfVVPqg~~v~~~A~~e 418 (493)
T PLN00212 361 LSPFWNVNAHSVVYITQGRARVQVVSNN-------------------GKTVFNGVLRPGQLLIIPQHYAVLKKAERE 418 (493)
T ss_pred cCCeecCCCCEEEEEeecceEEEEEcCC-------------------CCEEEEEEEcCCCEEEECCCCeEEEeecCC
Confidence 57999855 4456667777777775532 134578999999999999999999888643
No 43
>KOG2132|consensus
Probab=83.33 E-value=0.79 Score=45.04 Aligned_cols=120 Identities=18% Similarity=0.136 Sum_probs=73.4
Q ss_pred hhhhhhccccceeecCCcCCCchHHHH-HHHHHHHhcCcccceEEeCCCCCCCCCCcccCCCcEEEEEEeEEEEEEeCCC
Q psy13797 65 IVWDHYREGCSIRFLNPQTYIKPLQQL-NASLQELFGCFVGANTYQTPPTAQGFAPHYDDIEAFILQLEGKKKWKVYLPR 143 (339)
Q Consensus 65 ~~~~~~~~G~tl~l~~~~~~~~~l~~~-~~~Le~~~g~~v~~n~Y~tp~gs~gf~~H~D~~dvfvlQl~G~K~W~l~~p~ 143 (339)
.+.+.+..|--+.+.+-...+|.+... ...|+...|+..- -+++ |+ . ..|+|-.++++.|+.|.||-++++|.
T Consensus 140 ~l~d~~~~~~p~~~l~~~~hwpa~~kw~l~~l~~va~~rTv-pvEv---g~-~-y~~~~w~q~l~t~~~g~~R~~~~~p~ 213 (355)
T KOG2132|consen 140 FLNDTVGRGTPVILLGFNWHWPAIQKWSLGYLQQVAGNRTV-PVEV---GS-T-YADEDWSQNLMTQIKGIKRCILFEPR 213 (355)
T ss_pred HHHHhhcCCCceEEecccccchHhhhcchhHHHhcccceee-eeec---cc-c-cchhHHHhhhHHHhhhhhhhhcCCcc
Confidence 455667778777777776677765543 2223333343321 1122 22 2 46999999999999999999999998
Q ss_pred CCCCCCCCC-------------CCCCCCCCcC----CCCcEEEEEcCCCeeeeCCCceeeeecCC
Q psy13797 144 MVDEYLPRY-------------SSPNFSQEEI----GTPILTVTLEPGDLLYLPRGYIHQASTVT 191 (339)
Q Consensus 144 ~~~~~lp~~-------------~~~~~~~~~~----~~~~~e~~L~pGDvLYiPrG~~H~a~s~~ 191 (339)
+. ..++-+ +.+++...+. ...........||+++||--|||...+..
T Consensus 214 ~~-~YlAqh~lfdqi~elk~Di~iPDyc~~~~f~~~~v~~~~w~GpaGtV~pih~dp~hNi~~qv 277 (355)
T KOG2132|consen 214 EC-LYLAQHHLFDQIPELKFDISIPDYCSFPNFENEVVDINAWIGPAGTVLPIHMDPWHNILSQV 277 (355)
T ss_pred cc-chhhhhhhhccchhhhhccCCCceeecCCCCccccceeEEeccCCceeccccccccceeeee
Confidence 21 111110 1233322221 12233445555999999999999998864
No 44
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=82.90 E-value=0.75 Score=35.21 Aligned_cols=54 Identities=30% Similarity=0.526 Sum_probs=34.6
Q ss_pred ceEEeCCCCCCCCCCcccCCCcEEEEEEeEEEEEEeCCCCCCCCCCCCCCCCCCCCcCCCCcEEEEEcCCCeeeeCCCce
Q psy13797 105 ANTYQTPPTAQGFAPHYDDIEAFILQLEGKKKWKVYLPRMVDEYLPRYSSPNFSQEEIGTPILTVTLEPGDLLYLPRGYI 184 (339)
Q Consensus 105 ~n~Y~tp~gs~gf~~H~D~~dvfvlQl~G~K~W~l~~p~~~~~~lp~~~~~~~~~~~~~~~~~e~~L~pGDvLYiPrG~~ 184 (339)
+-+|-..+|. +..+|+. |=++.=|+|+=+-..- .....++.|||++|||+|+-
T Consensus 9 ~g~w~~~pg~--~~~~~~~-~E~~~vleG~v~it~~------------------------~G~~~~~~aGD~~~~p~G~~ 61 (74)
T PF05899_consen 9 AGVWECTPGK--FPWPYPE-DEFFYVLEGEVTITDE------------------------DGETVTFKAGDAFFLPKGWT 61 (74)
T ss_dssp EEEEEEECEE--EEEEESS-EEEEEEEEEEEEEEET------------------------TTEEEEEETTEEEEE-TTEE
T ss_pred EEEEEECCce--eEeeCCC-CEEEEEEEeEEEEEEC------------------------CCCEEEEcCCcEEEECCCCE
Confidence 4455555553 4567777 4444558887655431 12359999999999999984
Q ss_pred e
Q psy13797 185 H 185 (339)
Q Consensus 185 H 185 (339)
-
T Consensus 62 ~ 62 (74)
T PF05899_consen 62 G 62 (74)
T ss_dssp E
T ss_pred E
Confidence 3
No 45
>PF03079 ARD: ARD/ARD' family; InterPro: IPR004313 The two acireductone dioxygenase enzymes (ARD and ARD', previously known as E-2 and E-2') from Klebsiella pneumoniae share the same amino acid sequence Q9ZFE7 from SWISSPROT, but bind different metal ions: ARD binds Ni2+, ARD' binds Fe2+ []. ARD and ARD' can be experimentally interconverted by removal of the bound metal ion and reconstitution with the appropriate metal ion. The two enzymes share the same substrate, 1,2-dihydroxy-3-keto-5-(methylthio)pentene, but yield different products. ARD' yields the alpha-keto precursor of methionine (and formate), thus forming part of the ubiquitous methionine salvage pathway that converts 5'-methylthioadenosine (MTA) to methionine. This pathway is responsible for the tight control of the concentration of MTA, which is a powerful inhibitor of polyamine biosynthesis and transmethylation reactions []. ARD yields methylthiopropanoate, carbon monoxide and formate, and thus prevents the conversion of MTA to methionine. The role of the ARD catalysed reaction is unclear: methylthiopropanoate is cytotoxic, and carbon monoxide can activate guanylyl cyclase, leading to increased intracellular cGMP levels [, ]. This family also contains other proteins, whose functions are not well characterised.; GO: 0010309 acireductone dioxygenase [iron(II)-requiring] activity, 0055114 oxidation-reduction process; PDB: 1VR3_A 1ZRR_A 2HJI_A.
Probab=82.87 E-value=5.3 Score=35.30 Aligned_cols=25 Identities=28% Similarity=0.481 Sum_probs=19.4
Q ss_pred cEEEEEcCCCeeeeCCCceeeeecC
Q psy13797 166 ILTVTLEPGDLLYLPRGYIHQASTV 190 (339)
Q Consensus 166 ~~e~~L~pGDvLYiPrG~~H~a~s~ 190 (339)
...+.+++||+|.||+|..|.-...
T Consensus 114 wiri~~e~GDli~vP~g~~HrF~~~ 138 (157)
T PF03079_consen 114 WIRILCEKGDLIVVPAGTYHRFTLG 138 (157)
T ss_dssp EEEEEEETTCEEEE-TT--EEEEES
T ss_pred EEEEEEcCCCEEecCCCCceeEEcC
Confidence 4569999999999999999999864
No 46
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=82.58 E-value=6.7 Score=40.71 Aligned_cols=35 Identities=14% Similarity=0.134 Sum_probs=27.3
Q ss_pred EEEEEcCCCeeeeCCCceeeeecCCCcceeeeeec
Q psy13797 167 LTVTLEPGDLLYLPRGYIHQASTVTNEHSLHVTIS 201 (339)
Q Consensus 167 ~e~~L~pGDvLYiPrG~~H~a~s~~~~~SlhlT~~ 201 (339)
.+..|+|||.+|||+|..|.-++.+++.-.=|.+.
T Consensus 424 ~~~~L~~GDSi~ip~g~~H~~~N~g~~~l~iI~V~ 458 (478)
T PRK15460 424 DIKLLGENESIYIPLGATHCLENPGKIPLDLIEVR 458 (478)
T ss_pred EEEEecCCCEEEECCCCcEEEEcCCCCCEEEEEEE
Confidence 47999999999999999999998765443334443
No 47
>PRK10371 DNA-binding transcriptional regulator MelR; Provisional
Probab=82.56 E-value=3.8 Score=39.46 Aligned_cols=68 Identities=13% Similarity=0.194 Sum_probs=51.2
Q ss_pred hcCcccceEEeCCCCCCCCCCcccCCCcEEEEEEeEEEEEEeCCCCCCCCCCCCCCCCCCCCcCCCCcEEEEEcCCCeee
Q psy13797 99 FGCFVGANTYQTPPTAQGFAPHYDDIEAFILQLEGKKKWKVYLPRMVDEYLPRYSSPNFSQEEIGTPILTVTLEPGDLLY 178 (339)
Q Consensus 99 ~g~~v~~n~Y~tp~gs~gf~~H~D~~dvfvlQl~G~K~W~l~~p~~~~~~lp~~~~~~~~~~~~~~~~~e~~L~pGDvLY 178 (339)
+|.+.+..+-.-++..- +++||-..=-++.+++|+=...+.+ .+++|.|||++.
T Consensus 22 ~~~~~~~~~~~~~~~~m-~~~HwH~e~Ei~yv~~G~~~~~i~g-------------------------~~~~l~~Gd~il 75 (302)
T PRK10371 22 YSEYQRLEIEFRPPHIM-PTSHWHGQVEVNVPFDGDVEYLINN-------------------------EKVQINQGHITL 75 (302)
T ss_pred ccCCceeEEEeeCCCCC-CCCCccccEEEEEecCCcEEEEECC-------------------------EEEEEcCCcEEE
Confidence 45566666777776653 6789998888889999965544422 268999999999
Q ss_pred eCCCceeeeecCCC
Q psy13797 179 LPRGYIHQASTVTN 192 (339)
Q Consensus 179 iPrG~~H~a~s~~~ 192 (339)
||.|..|.....++
T Consensus 76 i~s~~~H~~~~~~~ 89 (302)
T PRK10371 76 FWACTPHQLTDPGN 89 (302)
T ss_pred EecCCcccccccCC
Confidence 99999999877544
No 48
>PF02041 Auxin_BP: Auxin binding protein; InterPro: IPR000526 Auxin binding protein is located in the lumen of the endoplasmic reticulum (ER). The primary structure contains an N-terminal hydrophobic leader sequence of 30-40 amino acids, which could represent a signal for translocation of the protein to the ER [, ]. The mature protein comprises around 165 residues, and contains a number of potential N-glycosylation sites. In vitro transport studies have demonstrated co-translational glycosylation []. Retention within the lumen of the ER correlates with an additional signal located at the C terminus, represented by the sequence Lys-Asp-Glu-Leu, known to be responsible for preventing secretion of proteins from the lumen of the ER in eukaryotic cells [, ].; GO: 0004872 receptor activity, 0005788 endoplasmic reticulum lumen; PDB: 1LR5_D 1LRH_D.
Probab=82.55 E-value=7.9 Score=34.19 Aligned_cols=85 Identities=18% Similarity=0.257 Sum_probs=44.4
Q ss_pred cccceEEe-C-CCCCCCCCCcccCCCcEEEEEEeEEEEEEeCCCCCCCCCCCCCCCCCCCCcCCCCcEEEEEcCCCeeee
Q psy13797 102 FVGANTYQ-T-PPTAQGFAPHYDDIEAFILQLEGKKKWKVYLPRMVDEYLPRYSSPNFSQEEIGTPILTVTLEPGDLLYL 179 (339)
Q Consensus 102 ~v~~n~Y~-t-p~gs~gf~~H~D~~dvfvlQl~G~K~W~l~~p~~~~~~lp~~~~~~~~~~~~~~~~~e~~L~pGDvLYi 179 (339)
+..+++|+ | .+|+ +.++|--..+=.++-+.|+=.=.|.... ...| | ...++...|++.++|
T Consensus 41 mkevEVwlQTfAPG~-~TPiHRHsCEEVFvVLkG~GTl~l~~~~---~~~p------------G-~pqef~~~pnSTf~I 103 (167)
T PF02041_consen 41 MKEVEVWLQTFAPGS-ATPIHRHSCEEVFVVLKGSGTLYLASSH---EKYP------------G-KPQEFPIFPNSTFHI 103 (167)
T ss_dssp -SSEEEEEEEE-TT--B--EEEESS-EEEEEEE--EEEEE--SS---SSS---------------S-EEEEE-TTEEEEE
T ss_pred ceeeeEEeeeecCCC-CCCCccccccEEEEEEecceEEEEeccc---ccCC------------C-CceEEEecCCCeEEe
Confidence 44456776 2 2444 4589999886555667888887777332 1121 1 234899999999999
Q ss_pred CCCceeeeecCCCcceeeeeeccc
Q psy13797 180 PRGYIHQASTVTNEHSLHVTISVY 203 (339)
Q Consensus 180 PrG~~H~a~s~~~~~SlhlT~~~~ 203 (339)
|.+-.|++...+...-+.+.+-+.
T Consensus 104 Pvn~~HQv~NT~e~eDlqvlViiS 127 (167)
T PF02041_consen 104 PVNDAHQVWNTNEHEDLQVLVIIS 127 (167)
T ss_dssp -TT--EEEE---SSS-EEEEEEEE
T ss_pred CCCCcceeecCCCCcceEEEEEec
Confidence 999999999864345676666554
No 49
>TIGR00568 alkb DNA alkylation damage repair protein AlkB. Proteins in this family have an as of yet undetermined function in the repair of alkylation damage to DNA. Alignment and family designation based on phylogenomic analysis of Jonathan A. Eisen (PhD Thesis, Stanford University, 1999).
Probab=81.69 E-value=8.8 Score=34.25 Aligned_cols=78 Identities=17% Similarity=0.119 Sum_probs=47.5
Q ss_pred CCchHHHHHHHHHHHhcC------cccceEEeCCCCCCCCCCcccCCCc-----EEEEEEeEEEEEEeCCCCCCCCCCCC
Q psy13797 84 YIKPLQQLNASLQELFGC------FVGANTYQTPPTAQGFAPHYDDIEA-----FILQLEGKKKWKVYLPRMVDEYLPRY 152 (339)
Q Consensus 84 ~~~~l~~~~~~Le~~~g~------~v~~n~Y~tp~gs~gf~~H~D~~dv-----fvlQl~G~K~W~l~~p~~~~~~lp~~ 152 (339)
+-+.|..+...++...|. .|-+|.|-. | .+++.|-|..+. ++-==-|.-+-.++.+..
T Consensus 72 ~P~~L~~L~~~v~~~~g~~~~~~n~~LvN~Y~~--G-d~mg~H~D~~e~~~~~pI~SvSLG~~r~F~~~~~~-------- 140 (169)
T TIGR00568 72 MPQDLGDLCERVATAAGFPDFQPDACLVNRYAP--G-ATLSLHQDRDEPDLRAPLLSVSLGLPAIFLIGGLK-------- 140 (169)
T ss_pred CCHHHHHHHHHHHHHhCCCCCCCCEEEEEeecC--C-CccccccccccccCCCCEEEEeCCCCEEEEecCCc--------
Confidence 668899999999988874 344688853 3 468899996321 111112222222222210
Q ss_pred CCCCCCCCcCCCCcEEEEEcCCCeeeeCC
Q psy13797 153 SSPNFSQEEIGTPILTVTLEPGDLLYLPR 181 (339)
Q Consensus 153 ~~~~~~~~~~~~~~~e~~L~pGDvLYiPr 181 (339)
...+...+.|++||+|.|-.
T Consensus 141 ---------~~~~~~~l~L~sGsllvM~G 160 (169)
T TIGR00568 141 ---------RNDPPKRLRLHSGDVVIMGG 160 (169)
T ss_pred ---------CCCceEEEEeCCCCEEEECC
Confidence 11334689999999999853
No 50
>TIGR02297 HpaA 4-hydroxyphenylacetate catabolism regulatory protein HpaA. This putative transcriptional regulator, which contains both the substrate-binding, dimerization domain (pfam02311) and the helix-turn-helix DNA-binding domain (pfam00165) of the AraC famil, is located proximal to genes of the 4-hydroxyphenylacetate catabolism pathway.
Probab=81.26 E-value=4 Score=38.25 Aligned_cols=51 Identities=14% Similarity=0.075 Sum_probs=37.6
Q ss_pred CCCcccC-CCcEEEEEEeEEEEEEeCCCCCCCCCCCCCCCCCCCCcCCCCcEEEEEcCCCeeeeCCCceeeeecCCC
Q psy13797 117 FAPHYDD-IEAFILQLEGKKKWKVYLPRMVDEYLPRYSSPNFSQEEIGTPILTVTLEPGDLLYLPRGYIHQASTVTN 192 (339)
Q Consensus 117 f~~H~D~-~dvfvlQl~G~K~W~l~~p~~~~~~lp~~~~~~~~~~~~~~~~~e~~L~pGDvLYiPrG~~H~a~s~~~ 192 (339)
+++|+.+ .--+++-+.|+-...+-. ....++|||++++|+|..|.....++
T Consensus 36 ~~~H~H~~~~~l~~~~~G~~~~~~~~-------------------------~~~~l~~g~~~ii~~~~~H~~~~~~~ 87 (287)
T TIGR02297 36 MPVHFHDRYYQLHYLTEGSIALQLDE-------------------------HEYSEYAPCFFLTPPSVPHGFVTDLD 87 (287)
T ss_pred CCCcccccceeEEEEeeCceEEEECC-------------------------EEEEecCCeEEEeCCCCccccccCCC
Confidence 4789876 456677777866543311 25889999999999999999877543
No 51
>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=80.10 E-value=12 Score=33.16 Aligned_cols=86 Identities=20% Similarity=0.271 Sum_probs=61.9
Q ss_pred HHHHHHhcC-cccceEEeCCCCCCCCCCcccCC-CcEEEEEEeEEEEEEeCCCCCCCCCCCCCCCCCCCCcCCCCcEEEE
Q psy13797 93 ASLQELFGC-FVGANTYQTPPTAQGFAPHYDDI-EAFILQLEGKKKWKVYLPRMVDEYLPRYSSPNFSQEEIGTPILTVT 170 (339)
Q Consensus 93 ~~Le~~~g~-~v~~n~Y~tp~gs~gf~~H~D~~-dvfvlQl~G~K~W~l~~p~~~~~~lp~~~~~~~~~~~~~~~~~e~~ 170 (339)
..|-..+|. ..|+|+=.-+||+.+-..|+-.. |=|+.-|+|+=.-++- .-+..
T Consensus 31 ~~lG~~~Gl~~fGvn~~~v~PG~~Ss~~H~Hs~edEfv~ILeGE~~l~~d-------------------------~~e~~ 85 (161)
T COG3837 31 TRLGDALGLKRFGVNLEIVEPGGESSLRHWHSAEDEFVYILEGEGTLRED-------------------------GGETR 85 (161)
T ss_pred hhhhhhcChhhcccceEEeCCCCccccccccccCceEEEEEcCceEEEEC-------------------------CeeEE
Confidence 455566663 67888866666666668999976 6788888887655442 22689
Q ss_pred EcCCCeeeeCCC--ceeeeecCCCcceeeeeeccc
Q psy13797 171 LEPGDLLYLPRG--YIHQASTVTNEHSLHVTISVY 203 (339)
Q Consensus 171 L~pGDvLYiPrG--~~H~a~s~~~~~SlhlT~~~~ 203 (339)
|+|||.+=+|.| ..|+-..-++-.-.=|.+|..
T Consensus 86 lrpGD~~gFpAG~~~aHhliN~s~~~~~yL~vG~r 120 (161)
T COG3837 86 LRPGDSAGFPAGVGNAHHLINRSDVILRYLEVGTR 120 (161)
T ss_pred ecCCceeeccCCCcceeEEeecCCceEEEEEeccc
Confidence 999999999999 999988875443445566653
No 52
>TIGR00218 manA mannose-6-phosphate isomerase, class I. The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.
Probab=79.85 E-value=0.88 Score=44.04 Aligned_cols=22 Identities=36% Similarity=0.812 Sum_probs=19.4
Q ss_pred cEEEEEcCCCeeeeCCCceeee
Q psy13797 166 ILTVTLEPGDLLYLPRGYIHQA 187 (339)
Q Consensus 166 ~~e~~L~pGDvLYiPrG~~H~a 187 (339)
...+.++|||++|||.|.+|..
T Consensus 150 ln~v~v~~Gd~i~ipaGt~HA~ 171 (302)
T TIGR00218 150 LNRIKLKPGDFFYVPSGTPHAY 171 (302)
T ss_pred hcccccCCCCEEEeCCCCcccc
Confidence 3468899999999999999984
No 53
>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A ....
Probab=79.30 E-value=8.1 Score=34.07 Aligned_cols=85 Identities=27% Similarity=0.316 Sum_probs=43.8
Q ss_pred chHHHHHHHHHHHhc----C---cccceEEeCCCCCCCCCCcccCCCc-----E-EEEEEeEEEEEEeCCCCCCCCCCCC
Q psy13797 86 KPLQQLNASLQELFG----C---FVGANTYQTPPTAQGFAPHYDDIEA-----F-ILQLEGKKKWKVYLPRMVDEYLPRY 152 (339)
Q Consensus 86 ~~l~~~~~~Le~~~g----~---~v~~n~Y~tp~gs~gf~~H~D~~dv-----f-vlQl~G~K~W~l~~p~~~~~~lp~~ 152 (339)
+.+.++...+.+..+ . .+-+|.|-... ++++|.|+.+. + .+=+-+...+.+.....
T Consensus 75 ~~l~~~~~~~~~~~~~~~~~~~n~~liN~Y~~g~---~i~~H~D~~~~~~~~~I~slSLG~~~~~~f~~~~~-------- 143 (194)
T PF13532_consen 75 EWLSRLLERLVEATGIPPGWRPNQCLINYYRDGS---GIGPHSDDEEYGFGPPIASLSLGSSRVFRFRNKSD-------- 143 (194)
T ss_dssp HHHHHHHHHHHHHHT-SHSS--SEEEEEEESSTT----EEEE---TTC-CCSEEEEEEEES-EEEEEEECGG--------
T ss_pred HHHHHHHHHHHHHhccccCCCCCEEEEEecCCCC---CcCCCCCcccccCCCcEEEEEEccCceEEEeeccC--------
Confidence 345666666655433 1 23356776633 67899998743 2 33333344454442211
Q ss_pred CCCCCCCCcCCCCcEEEEEcCCCeeeeCCC---ceeeeecCC
Q psy13797 153 SSPNFSQEEIGTPILTVTLEPGDLLYLPRG---YIHQASTVT 191 (339)
Q Consensus 153 ~~~~~~~~~~~~~~~e~~L~pGDvLYiPrG---~~H~a~s~~ 191 (339)
..+..++.|.+||+|.|-.. .||.+....
T Consensus 144 ----------~~~~~~~~L~~gsl~vm~g~~r~~~H~I~~~~ 175 (194)
T PF13532_consen 144 ----------DDEPIEVPLPPGSLLVMSGEARYDWHGIPPVK 175 (194)
T ss_dssp ----------TS-EEEEEE-TTEEEEEETTHHHHEEEE-S-S
T ss_pred ----------CCccEEEEcCCCCEEEeChHHhhheeEccccc
Confidence 13577999999999999843 238887764
No 54
>PF12852 Cupin_6: Cupin
Probab=78.95 E-value=6 Score=34.96 Aligned_cols=66 Identities=21% Similarity=0.284 Sum_probs=41.1
Q ss_pred ccceEEeCCCCCCCCCCcccCC--CcEEEEEEeEEEEEEeCCCCCCCCCCCCCCCCCCCCcCCCCcEEEEEcCCCeeeeC
Q psy13797 103 VGANTYQTPPTAQGFAPHYDDI--EAFILQLEGKKKWKVYLPRMVDEYLPRYSSPNFSQEEIGTPILTVTLEPGDLLYLP 180 (339)
Q Consensus 103 v~~n~Y~tp~gs~gf~~H~D~~--dvfvlQl~G~K~W~l~~p~~~~~~lp~~~~~~~~~~~~~~~~~e~~L~pGDvLYiP 180 (339)
....+|....-+.....|++.. -.|.+=++|+-..++-... ..+.|++||++++|
T Consensus 12 l~~~~~~~~~~~~~W~~~~~~~~~~~fh~V~~G~~~l~~~~~~-----------------------~~~~L~~GDivllp 68 (186)
T PF12852_consen 12 LRGSLFFRCELCGPWGLRFPGSPGASFHVVLRGSCWLRVPGGG-----------------------EPIRLEAGDIVLLP 68 (186)
T ss_pred CceEEEEEEEEeCCcEEeccCCCceEEEEEECCeEEEEEcCCC-----------------------CeEEecCCCEEEEc
Confidence 3333444333222344566655 3567777777555542210 14899999999999
Q ss_pred CCceeeeecCC
Q psy13797 181 RGYIHQASTVT 191 (339)
Q Consensus 181 rG~~H~a~s~~ 191 (339)
+|..|...+..
T Consensus 69 ~g~~H~l~~~~ 79 (186)
T PF12852_consen 69 RGTAHVLSSDP 79 (186)
T ss_pred CCCCeEeCCCC
Confidence 99999997654
No 55
>PRK13501 transcriptional activator RhaR; Provisional
Probab=78.74 E-value=4.5 Score=38.23 Aligned_cols=50 Identities=16% Similarity=0.261 Sum_probs=39.6
Q ss_pred CCCcccCCCcEEEEEEeEEEEEEeCCCCCCCCCCCCCCCCCCCCcCCCCcEEEEEcCCCeeeeCCCceeeeecCC
Q psy13797 117 FAPHYDDIEAFILQLEGKKKWKVYLPRMVDEYLPRYSSPNFSQEEIGTPILTVTLEPGDLLYLPRGYIHQASTVT 191 (339)
Q Consensus 117 f~~H~D~~dvfvlQl~G~K~W~l~~p~~~~~~lp~~~~~~~~~~~~~~~~~e~~L~pGDvLYiPrG~~H~a~s~~ 191 (339)
+++|+.+.--+++-+.|+=.-.+-. ..+.+++||+++||+|..|.....+
T Consensus 31 ~~~H~H~~~ei~~i~~G~~~~~i~~-------------------------~~~~l~~g~~~~I~p~~~H~~~~~~ 80 (290)
T PRK13501 31 FVEHTHQFCEIVIVWRGNGLHVLND-------------------------HPYRITCGDVFYIQAADHHSYESVH 80 (290)
T ss_pred CccccccceeEEEEecCceEEEECC-------------------------eeeeecCCeEEEEcCCCcccccccC
Confidence 5689987777788888887665521 2588999999999999999987653
No 56
>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine. The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.
Probab=78.66 E-value=1.4 Score=38.90 Aligned_cols=17 Identities=47% Similarity=1.042 Sum_probs=12.7
Q ss_pred EEEEEcCCCeeeeCCCc
Q psy13797 167 LTVTLEPGDLLYLPRGY 183 (339)
Q Consensus 167 ~e~~L~pGDvLYiPrG~ 183 (339)
..++.+|||+||||+|.
T Consensus 113 ~~~~A~~GDvi~iPkGs 129 (152)
T PF06249_consen 113 QTVTAKPGDVIFIPKGS 129 (152)
T ss_dssp EEEEEETT-EEEE-TT-
T ss_pred EEEEEcCCcEEEECCCC
Confidence 36899999999999994
No 57
>PRK15131 mannose-6-phosphate isomerase; Provisional
Probab=78.52 E-value=1.3 Score=44.57 Aligned_cols=23 Identities=26% Similarity=0.361 Sum_probs=20.2
Q ss_pred EEEEEcCCCeeeeCCCceeeeec
Q psy13797 167 LTVTLEPGDLLYLPRGYIHQAST 189 (339)
Q Consensus 167 ~e~~L~pGDvLYiPrG~~H~a~s 189 (339)
-.+.|+|||.+|+|.|.+|.--+
T Consensus 237 N~v~l~pGeaifipAg~~HAyl~ 259 (389)
T PRK15131 237 NVVKLNPGEAMFLFAETPHAYLQ 259 (389)
T ss_pred eEEEeCCCCEEEeCCCCCeEEcC
Confidence 36889999999999999998644
No 58
>PF00908 dTDP_sugar_isom: dTDP-4-dehydrorhamnose 3,5-epimerase; InterPro: IPR000888 Deoxythymidine diphosphate (dTDP)-4-keto-6-deoxy-d-hexulose 3, 5-epimerase (RmlC, 5.1.3.13 from EC) is involved in the biosynthesis of dTDP-l-rhamnose, which is an essential component of the bacterial cell wall, converting dTDP-4-keto-6-deoxy-D-glucose to dTDP-4-keto-L-rhamnose. The crystal structure of RmlC from Methanobacterium thermoautotrophicum was determined in the presence and absence of a substrate analogue. RmlC is a homodimer comprising a central jelly roll motif, which extends in two directions into longer beta-sheets. Binding of dTDP is stabilised by ionic interactions to the phosphate group and by a combination of ionic and hydrophobic interactions with the base. The active site, which is located in the centre of the jelly roll, is formed by residues that are conserved in all known RmlC sequence homologues. The active site is lined with a number of charged residues and a number of residues with hydrogen-bonding potentials, which together comprise a potential network for substrate binding and catalysis. The active site is also lined with aromatic residues which provide favorable environments for the base moiety of dTDP and potentially for the sugar moiety of the substrate [].; GO: 0008830 dTDP-4-dehydrorhamnose 3,5-epimerase activity, 0009103 lipopolysaccharide biosynthetic process; PDB: 1EPZ_A 1EP0_A 1NXM_A 1NZC_D 2IXL_C 1NYW_B 2IXC_D 1PM7_B 1UPI_A 3RYK_B ....
Probab=77.65 E-value=9.9 Score=34.15 Aligned_cols=77 Identities=25% Similarity=0.333 Sum_probs=49.6
Q ss_pred cccceEEeCCCCCCCCCCcccCCC----cEEEEEEeEEEEEEeCCCCCCCCCCCCCCCCCCCCcCCCCcEEEEEcCCC--
Q psy13797 102 FVGANTYQTPPTAQGFAPHYDDIE----AFILQLEGKKKWKVYLPRMVDEYLPRYSSPNFSQEEIGTPILTVTLEPGD-- 175 (339)
Q Consensus 102 ~v~~n~Y~tp~gs~gf~~H~D~~d----vfvlQl~G~K~W~l~~p~~~~~~lp~~~~~~~~~~~~~~~~~e~~L~pGD-- 175 (339)
.++.|.-.|..|..= ++||-... =++.=+.|+=-=-++.-+. .|+.|- ....++|.+++
T Consensus 42 ~~q~n~S~s~~gvlR-GlH~q~~~~~q~Klv~~~~G~i~dV~vDlR~--------~SpTfg------~~~~~~Ls~~n~~ 106 (176)
T PF00908_consen 42 FVQDNISVSKKGVLR-GLHYQSPPYAQAKLVRCLRGEIFDVAVDLRK--------GSPTFG------KWVSVELSAENPR 106 (176)
T ss_dssp EEEEEEEEEETTBEE-EEEEESTTT-EEEEEEEEESEEEEEEEE-BT--------TSTTTT-------EEEEEEETTT--
T ss_pred cCceEEEEccccEEE-EEEEecCCCCCCcEEEEecCeEEEEEEECCC--------CCCCCC------EEEEEEeCccccC
Confidence 577888787776542 57887653 3455566654444444321 233332 45678898887
Q ss_pred eeeeCCCceeeeecCCCc
Q psy13797 176 LLYLPRGYIHQASTVTNE 193 (339)
Q Consensus 176 vLYiPrG~~H~a~s~~~~ 193 (339)
+||||+|++|--.++++.
T Consensus 107 ~l~IP~G~aHGf~~l~d~ 124 (176)
T PF00908_consen 107 QLYIPPGVAHGFQTLEDD 124 (176)
T ss_dssp EEEE-TTEEEEEEESSSE
T ss_pred EEEeCCcceeeEEeccCc
Confidence 799999999999999765
No 59
>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]
Probab=77.04 E-value=1.4 Score=43.10 Aligned_cols=23 Identities=35% Similarity=0.624 Sum_probs=20.0
Q ss_pred EEEEEcCCCeeeeCCCceeeeec
Q psy13797 167 LTVTLEPGDLLYLPRGYIHQAST 189 (339)
Q Consensus 167 ~e~~L~pGDvLYiPrG~~H~a~s 189 (339)
-.+.|+|||.+|+|.|.+|.-..
T Consensus 158 n~v~lkpGe~~fl~Agt~HA~~~ 180 (312)
T COG1482 158 NRVKLKPGEAFFLPAGTPHAYLK 180 (312)
T ss_pred cEEecCCCCEEEecCCCceeecc
Confidence 36889999999999999998644
No 60
>KOG2107|consensus
Probab=75.28 E-value=3.1 Score=37.17 Aligned_cols=27 Identities=33% Similarity=0.602 Sum_probs=24.2
Q ss_pred CCcEEEEEcCCCeeeeCCCceeeeecC
Q psy13797 164 TPILTVTLEPGDLLYLPRGYIHQASTV 190 (339)
Q Consensus 164 ~~~~e~~L~pGDvLYiPrG~~H~a~s~ 190 (339)
+....+-++.||++.+|+|+.|.-++.
T Consensus 113 d~WIRi~vekGDlivlPaGiyHRFTtt 139 (179)
T KOG2107|consen 113 DQWIRIFVEKGDLIVLPAGIYHRFTTT 139 (179)
T ss_pred CCEEEEEEecCCEEEecCcceeeeecC
Confidence 467889999999999999999998775
No 61
>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]
Probab=74.34 E-value=2.3 Score=35.78 Aligned_cols=61 Identities=26% Similarity=0.409 Sum_probs=39.4
Q ss_pred cccceEEeCCCCCCCCCCcccCCCcEEEEEEeEEEEEEeCCCCCCCCCCCCCCCCCCCCcCCCCcEEEEEcCCCeeeeCC
Q psy13797 102 FVGANTYQTPPTAQGFAPHYDDIEAFILQLEGKKKWKVYLPRMVDEYLPRYSSPNFSQEEIGTPILTVTLEPGDLLYLPR 181 (339)
Q Consensus 102 ~v~~n~Y~tp~gs~gf~~H~D~~dvfvlQl~G~K~W~l~~p~~~~~~lp~~~~~~~~~~~~~~~~~e~~L~pGDvLYiPr 181 (339)
.+.+.+|-..+| .|..+||..+ |.-=|+|+-+.+ |+ ...-+.++|||++|+|.
T Consensus 44 ~~~~GiWe~TpG--~~r~~y~~~E-~chil~G~v~~T---~d---------------------~Ge~v~~~aGD~~~~~~ 96 (116)
T COG3450 44 QVETGIWECTPG--KFRVTYDEDE-FCHILEGRVEVT---PD---------------------GGEPVEVRAGDSFVFPA 96 (116)
T ss_pred CeeEeEEEecCc--cceEEcccce-EEEEEeeEEEEE---CC---------------------CCeEEEEcCCCEEEECC
Confidence 345567887777 4778888854 333456654322 21 12248899999999999
Q ss_pred Cceeeeec
Q psy13797 182 GYIHQAST 189 (339)
Q Consensus 182 G~~H~a~s 189 (339)
||.=.-+.
T Consensus 97 G~~g~W~V 104 (116)
T COG3450 97 GFKGTWEV 104 (116)
T ss_pred CCeEEEEE
Confidence 98654443
No 62
>PLN00212 glutelin; Provisional
Probab=72.31 E-value=31 Score=36.09 Aligned_cols=26 Identities=23% Similarity=0.332 Sum_probs=23.2
Q ss_pred EEEEcCCCeeeeCCCceeeeecCCCc
Q psy13797 168 TVTLEPGDLLYLPRGYIHQASTVTNE 193 (339)
Q Consensus 168 e~~L~pGDvLYiPrG~~H~a~s~~~~ 193 (339)
...|+.||++.||+|..|+....+++
T Consensus 149 v~~lr~GDViaiPaG~~hw~yN~Gd~ 174 (493)
T PLN00212 149 IHQFRQGDVVALPAGVAHWFYNDGDA 174 (493)
T ss_pred ceEeccCCEEEECCCCeEEEEeCCCC
Confidence 47899999999999999999997654
No 63
>PF09313 DUF1971: Domain of unknown function (DUF1971); InterPro: IPR015392 This uncharacterised domain is predominantly found in bacterial Tellurite resistance proteins. ; PDB: 3BB6_C 3M70_A 3DL3_I.
Probab=71.71 E-value=20 Score=28.22 Aligned_cols=53 Identities=15% Similarity=0.176 Sum_probs=38.4
Q ss_pred EEEEEeEEEEEEeCCCCCCCCCCCCCCCCCCCCcCCCCcEEEEEcCCCeeeeCCCceeeeecCCCcceeee
Q psy13797 128 ILQLEGKKKWKVYLPRMVDEYLPRYSSPNFSQEEIGTPILTVTLEPGDLLYLPRGYIHQASTVTNEHSLHV 198 (339)
Q Consensus 128 vlQl~G~K~W~l~~p~~~~~~lp~~~~~~~~~~~~~~~~~e~~L~pGDvLYiPrG~~H~a~s~~~~~Slhl 198 (339)
+.=++|+=+++.+.+... .+..++.+.+|+.-+||+..||.+...++...+.|
T Consensus 29 l~Vl~G~L~f~~~~~~~~------------------~~~~~~~~~~~~~~~i~Pq~wH~V~p~s~D~~f~l 81 (82)
T PF09313_consen 29 LRVLEGELKFYGLDEEGE------------------EPEEEVFIPAGQPPVIEPQQWHRVEPLSDDLRFQL 81 (82)
T ss_dssp EEEEESEEEEEEESSTT-------------------SESEEEEEETTEEEEE-TT-EEEEEESSTT-EEEE
T ss_pred EEEEeeEEEEEEECCCCC------------------ceeEEEEeCCCCCceeCCCceEEEEECCCCEEEEe
Confidence 556788888888877421 24458999999999999999999999876544443
No 64
>COG4766 EutQ Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=70.22 E-value=9.1 Score=33.88 Aligned_cols=22 Identities=36% Similarity=0.644 Sum_probs=17.3
Q ss_pred EEEEcCCCeeeeCCCceeeeec
Q psy13797 168 TVTLEPGDLLYLPRGYIHQAST 189 (339)
Q Consensus 168 e~~L~pGDvLYiPrG~~H~a~s 189 (339)
.++-+|||++|||.|---.-.+
T Consensus 137 tv~a~aGDvifiPKgssIefst 158 (176)
T COG4766 137 TVIAGAGDVIFIPKGSSIEFST 158 (176)
T ss_pred eEecCCCcEEEecCCCeEEEec
Confidence 5788899999999996544444
No 65
>PF14525 AraC_binding_2: AraC-binding-like domain
Probab=69.81 E-value=65 Score=26.96 Aligned_cols=34 Identities=26% Similarity=0.375 Sum_probs=26.9
Q ss_pred EEEEcCCCeeeeCCCceeeeecCCCcceeeeeec
Q psy13797 168 TVTLEPGDLLYLPRGYIHQASTVTNEHSLHVTIS 201 (339)
Q Consensus 168 e~~L~pGDvLYiPrG~~H~a~s~~~~~SlhlT~~ 201 (339)
++.+.|||++.++.+-.+.....+++..++|.|.
T Consensus 74 ~~~~~pg~~~l~d~~~~~~~~~~~~~~~~~l~ip 107 (172)
T PF14525_consen 74 EVELAPGDVVLLDPGQPYRLEFSAGCRQLSLRIP 107 (172)
T ss_pred EEEEcCCeEEEEcCCCCEEEEECCCccEEEEEEC
Confidence 7999999999999999998888755555555444
No 66
>COG1898 RfbC dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes [Cell envelope biogenesis, outer membrane]
Probab=69.53 E-value=28 Score=31.34 Aligned_cols=80 Identities=23% Similarity=0.321 Sum_probs=49.7
Q ss_pred CcccceEEeCCCCCCCCCCcccCCC--cEEEEEEeEEEEEEeCCCCCCCCCCCCCCCCCCCCcCCCCcEEEEEcCC--Ce
Q psy13797 101 CFVGANTYQTPPTAQGFAPHYDDIE--AFILQLEGKKKWKVYLPRMVDEYLPRYSSPNFSQEEIGTPILTVTLEPG--DL 176 (339)
Q Consensus 101 ~~v~~n~Y~tp~gs~gf~~H~D~~d--vfvlQl~G~K~W~l~~p~~~~~~lp~~~~~~~~~~~~~~~~~e~~L~pG--Dv 176 (339)
..++.|..+|.+|..= +.||..-. -++.-+.|+=.=.++.-+ ..|+.|. ....++|.+- -+
T Consensus 43 ~~~Q~n~S~S~~GvlR-GlHyq~~~q~klv~~v~G~v~dv~vDlR--------~~SpTyg------~~~~~~ls~~N~~~ 107 (173)
T COG1898 43 DFVQDNHSFSYPGVLR-GLHYQHKPQGKLVRVVSGKVFDVAVDLR--------KDSPTYG------KWVGVVLSAENKRQ 107 (173)
T ss_pred ccccceEEEecCCeeE-EEEcccCCCCeEEEEecCeEEEEEEEcc--------CCCCCcc------eEEEEEecCCCceE
Confidence 4678899888877553 57998665 233334444333333332 1223332 2345666655 79
Q ss_pred eeeCCCceeeeecCCCcce
Q psy13797 177 LYLPRGYIHQASTVTNEHS 195 (339)
Q Consensus 177 LYiPrG~~H~a~s~~~~~S 195 (339)
||||+|++|--.++++...
T Consensus 108 l~IP~G~AHGf~~L~d~~~ 126 (173)
T COG1898 108 LYIPPGFAHGFQVLSDDAE 126 (173)
T ss_pred EEeCCcccceeEEccCceE
Confidence 9999999999999987643
No 67
>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A.
Probab=68.37 E-value=4 Score=32.12 Aligned_cols=24 Identities=29% Similarity=0.386 Sum_probs=19.9
Q ss_pred EEcCCCeeeeCCCceeeeecCCCc
Q psy13797 170 TLEPGDLLYLPRGYIHQASTVTNE 193 (339)
Q Consensus 170 ~L~pGDvLYiPrG~~H~a~s~~~~ 193 (339)
...+||.++.|.|..|...+.++|
T Consensus 61 ~~~~G~~~~~p~g~~h~~~s~~gc 84 (91)
T PF12973_consen 61 RYGAGDWLRLPPGSSHTPRSDEGC 84 (91)
T ss_dssp EEETTEEEEE-TTEEEEEEESSCE
T ss_pred cCCCCeEEEeCCCCccccCcCCCE
Confidence 458999999999999999997654
No 68
>TIGR01221 rmlC dTDP-4-dehydrorhamnose 3,5-epimerase. This enzyme participates in the biosynthesis of dTDP-L-rhamnose, often as a precursor to LPS O-antigen
Probab=66.34 E-value=32 Score=30.91 Aligned_cols=77 Identities=23% Similarity=0.324 Sum_probs=49.4
Q ss_pred cccceEEeCCCCCCCCCCcccC---CCcEEEEEEeEEEEEEeCCCCCCCCCCCCCCCCCCCCcCCCCcEEEEEcC--CCe
Q psy13797 102 FVGANTYQTPPTAQGFAPHYDD---IEAFILQLEGKKKWKVYLPRMVDEYLPRYSSPNFSQEEIGTPILTVTLEP--GDL 176 (339)
Q Consensus 102 ~v~~n~Y~tp~gs~gf~~H~D~---~dvfvlQl~G~K~W~l~~p~~~~~~lp~~~~~~~~~~~~~~~~~e~~L~p--GDv 176 (339)
.+++|.=.|..|..= ++||-. ..=++.-+.|+=.=-++..+. .|+.|- ....+.|.+ +-+
T Consensus 43 ~~Q~n~S~S~~gvlR-GlH~q~~~~q~Klv~c~~G~i~dV~VDlR~--------~SpTfG------~~~~~~L~~~~~~~ 107 (176)
T TIGR01221 43 FVQDNHSKSYKGVLR-GLHYQRPHPQGKLVRVLRGEVFDVAVDLRR--------NSPTFG------KWVGVLLSAENKRQ 107 (176)
T ss_pred cceeEEEEecCCEEE-EEEECCCCCCceEEEEccCCEEEEEEECCC--------CcCCCC------eEEEEEECCCCCCE
Confidence 567777666666542 578863 334555566665555555432 233332 344677777 559
Q ss_pred eeeCCCceeeeecCCCc
Q psy13797 177 LYLPRGYIHQASTVTNE 193 (339)
Q Consensus 177 LYiPrG~~H~a~s~~~~ 193 (339)
||||+|++|--.++++.
T Consensus 108 l~IP~G~aHGF~~L~d~ 124 (176)
T TIGR01221 108 LWIPEGFAHGFVVLSDE 124 (176)
T ss_pred EEeCCcceeEEEEcCCC
Confidence 99999999999998755
No 69
>PLN02288 mannose-6-phosphate isomerase
Probab=66.28 E-value=3.5 Score=41.70 Aligned_cols=22 Identities=36% Similarity=0.514 Sum_probs=20.0
Q ss_pred EEEEcCCCeeeeCCCceeeeec
Q psy13797 168 TVTLEPGDLLYLPRGYIHQAST 189 (339)
Q Consensus 168 e~~L~pGDvLYiPrG~~H~a~s 189 (339)
-+.|+||+.+|+|.|.+|.-.+
T Consensus 252 ~v~L~PGeaifl~ag~~HAYl~ 273 (394)
T PLN02288 252 YVKLNPGEALYLGANEPHAYLS 273 (394)
T ss_pred eEecCCCCEEEecCCCCceecC
Confidence 5889999999999999998755
No 70
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A ....
Probab=65.56 E-value=3.3 Score=32.60 Aligned_cols=21 Identities=29% Similarity=0.615 Sum_probs=18.6
Q ss_pred EEcCCCeeeeCC-CceeeeecC
Q psy13797 170 TLEPGDLLYLPR-GYIHQASTV 190 (339)
Q Consensus 170 ~L~pGDvLYiPr-G~~H~a~s~ 190 (339)
+.++|+++.+|. ..||.+...
T Consensus 65 ~p~~g~~v~F~~~~~~H~v~~v 86 (100)
T PF13640_consen 65 VPKPGRLVIFPSDNSLHGVTPV 86 (100)
T ss_dssp E-BTTEEEEEESCTCEEEEEEE
T ss_pred cCCCCEEEEEeCCCCeecCccc
Confidence 399999999999 999999987
No 71
>TIGR01762 chlorin-enz chlorinating enzymes. This model represents a a group of highly homologous enzymes related to dioxygenases which chlorinate amino acid methyl groups. BarB1 and BarB2 are proposed to trichlorinate one of the methyl groups of a leucine residue in the biosynthesis of barbamide in the cyanobacterium Lyngbya majuscula. SyrB2 is proposed to chlorinate the methyl group of threonine in the biosynthesis of syringomycin in Pseudomonas syringae. CmaB is proposed to chlorinate the beta-methyl group of alloisoleucine in the process of ring closure in the biosynthesis of coronamic acid, a component of coronatine also in Pseudomonas syringae.
Probab=64.92 E-value=43 Score=32.25 Aligned_cols=26 Identities=8% Similarity=0.273 Sum_probs=22.7
Q ss_pred cEEEEEcCCCeeeeCCCceeeeecCC
Q psy13797 166 ILTVTLEPGDLLYLPRGYIHQASTVT 191 (339)
Q Consensus 166 ~~e~~L~pGDvLYiPrG~~H~a~s~~ 191 (339)
...++++|||++++=...||......
T Consensus 208 ~v~~~lkaGd~~~f~~~t~HgS~~N~ 233 (288)
T TIGR01762 208 AVPMQMKAGQFIIFWSTLMHASYPNS 233 (288)
T ss_pred eeeeeeCCceEEEECCCceecCCCCC
Confidence 45789999999999999999987763
No 72
>PRK09685 DNA-binding transcriptional activator FeaR; Provisional
Probab=63.54 E-value=18 Score=34.14 Aligned_cols=25 Identities=16% Similarity=0.118 Sum_probs=21.2
Q ss_pred EEEEcCCCeeeeCCCceeeeecCCC
Q psy13797 168 TVTLEPGDLLYLPRGYIHQASTVTN 192 (339)
Q Consensus 168 e~~L~pGDvLYiPrG~~H~a~s~~~ 192 (339)
+..+.|||++++|.+..|.....++
T Consensus 90 ~~~l~~G~~~l~~~~~p~~~~~~~~ 114 (302)
T PRK09685 90 QVQLAAGDITLIDASRPCSIYPQGL 114 (302)
T ss_pred EEEEcCCCEEEEECCCCcEeecCCC
Confidence 5889999999999999998776543
No 73
>PRK13503 transcriptional activator RhaS; Provisional
Probab=62.82 E-value=8.3 Score=35.82 Aligned_cols=50 Identities=16% Similarity=0.188 Sum_probs=37.3
Q ss_pred CCCCcccCCCcEEEEEEeEEEEEEeCCCCCCCCCCCCCCCCCCCCcCCCCcEEEEEcCCCeeeeCCCceeeeecC
Q psy13797 116 GFAPHYDDIEAFILQLEGKKKWKVYLPRMVDEYLPRYSSPNFSQEEIGTPILTVTLEPGDLLYLPRGYIHQASTV 190 (339)
Q Consensus 116 gf~~H~D~~dvfvlQl~G~K~W~l~~p~~~~~~lp~~~~~~~~~~~~~~~~~e~~L~pGDvLYiPrG~~H~a~s~ 190 (339)
.+++|+.+.--+++=..|.=.-.+-.. ...|+|||+++||+|..|.....
T Consensus 27 ~~~~H~H~~~ei~~v~~G~~~~~i~~~-------------------------~~~l~~g~~~~i~~~~~h~~~~~ 76 (278)
T PRK13503 27 AFPEHHHDFHEIVIVEHGTGIHVFNGQ-------------------------PYTLSGGTVCFVRDHDRHLYEHT 76 (278)
T ss_pred cccccccCceeEEEEecCceeeEecCC-------------------------cccccCCcEEEECCCccchhhhc
Confidence 356788877777777777655444221 47788999999999999987665
No 74
>KOG2508|consensus
Probab=60.86 E-value=7.2 Score=39.01 Aligned_cols=39 Identities=38% Similarity=0.806 Sum_probs=30.1
Q ss_pred CCCcEEEEEcCCCeeeeCCCceeeeecCC---Ccceeeeeec
Q psy13797 163 GTPILTVTLEPGDLLYLPRGYIHQASTVT---NEHSLHVTIS 201 (339)
Q Consensus 163 ~~~~~e~~L~pGDvLYiPrG~~H~a~s~~---~~~SlhlT~~ 201 (339)
+.-.+-+.++|||++|+|+-|.|.+++.. +++-+||.+.
T Consensus 357 ~~~~l~v~~~~~~~~~l~~~~~~~~~~~~~ssg~~~v~l~~~ 398 (437)
T KOG2508|consen 357 GTVPLVVDLEPGDMLYLPASWFHEVTSSSASSGGSDVHIAFN 398 (437)
T ss_pred cceeEEEecccCceeeechhheeeeeccccccCCcceeEEee
Confidence 34567899999999999999999999864 2344566554
No 75
>PF06719 AraC_N: AraC-type transcriptional regulator N-terminus; InterPro: IPR009594 This entry represents the N terminus of bacterial ARAC-type transcriptional regulators. In Escherichia coli these regulate the L-arabinose operon through sensing the presence of arabinose, and when the sugar is present, transmitting this information from the arabinose-binding domains to the protein s DNA-binding domains []. This family might represent the N-terminal arm of the protein, which binds to the C-terminal DNA binding domains to hold them in a state where the protein prefers to loop and remain non-activating []. This domain is associated with the IPR000005 from INTERPRO domain.
Probab=58.65 E-value=1.2e+02 Score=26.16 Aligned_cols=134 Identities=13% Similarity=0.157 Sum_probs=70.0
Q ss_pred eEEeCCCCCCCCCCcccCCCcEEEEEEeEEEEEEeCCCCCCCCCCCCCCCCCCCCcCCCCcEEEEEcCCCeeeeCCCcee
Q psy13797 106 NTYQTPPTAQGFAPHYDDIEAFILQLEGKKKWKVYLPRMVDEYLPRYSSPNFSQEEIGTPILTVTLEPGDLLYLPRGYIH 185 (339)
Q Consensus 106 n~Y~tp~gs~gf~~H~D~~dvfvlQl~G~K~W~l~~p~~~~~~lp~~~~~~~~~~~~~~~~~e~~L~pGDvLYiPrG~~H 185 (339)
.+|-+...+.-.+.-|.. .+.+=+.|+|+-.+-.. .+.-.||+.|..|....=
T Consensus 7 ~i~r~~~~~~~~~~~y~p--~i~~vlQG~K~~~~g~~-------------------------~~~Y~~g~~lv~~~~lPv 59 (155)
T PF06719_consen 7 SIFRSSRPTPPMPCVYEP--SICIVLQGSKRVHLGDQ-------------------------VFEYDAGQYLVSSVDLPV 59 (155)
T ss_pred EEEEECCCCCCcceecCC--eEEEEEeeeEEEEECCc-------------------------eEEecCCcEEEecCCCcE
Confidence 444444333222333444 35666779998888643 356679999999988765
Q ss_pred eeecC---CCcceeeeeecccccccHHHHHHHHHHHHHHHHccCCHHHHhcCCcchhhccCccCCCCCChHHHHHHHHHH
Q psy13797 186 QASTV---TNEHSLHVTISVYQKTAWIDLLEKAMPKALQAAGATDLEFRRGLPIGYLRYAGLARGKPVDIQADRLAMKEN 262 (339)
Q Consensus 186 ~a~s~---~~~~SlhlT~~~~~~~sw~dll~~~l~~~l~~~~~~d~~~R~~lp~~~~~~~g~~~~~~~~~~~~r~~~~~~ 262 (339)
..+.. ++.+-+.+.+.+.+ +++.+++... ..... ...-+. .|+...+.+. ++.+.
T Consensus 60 ~~~v~~AS~~~P~l~l~l~ld~-----~~l~el~~~~-----~~~~~-~~~~~~-----~~~~~~~~~~------~l~da 117 (155)
T PF06719_consen 60 ESEVVEASPEEPYLALSLELDP-----ALLAELVLEL-----PPQPP-PPPPAS-----QGIFVAPADE------ELLDA 117 (155)
T ss_pred EEEEeeccCCCCEEEEEEEcCH-----HHHHHHHHhc-----ccccC-CCCCCC-----CccccccCCH------HHHHH
Confidence 55542 34567777777753 2444443221 11111 111111 0333332222 68888
Q ss_pred HHHHHHHHhhccCChhhHHHHHHHhh
Q psy13797 263 LKDLLAKLVEYVDLDDGVDEMGKQLM 288 (339)
Q Consensus 263 l~~l~~~l~~~~~~~~a~d~~~~~f~ 288 (339)
+..|++-|.+..+..-.++.+.++.+
T Consensus 118 ~~RLl~ll~~p~d~~~L~pli~rEi~ 143 (155)
T PF06719_consen 118 LLRLLRLLDDPEDIPILAPLILREIL 143 (155)
T ss_pred HHHHHHHHCCchhhHHHHHHHHHHHH
Confidence 88888777554444434444444433
No 76
>TIGR03027 pepcterm_export putative polysaccharide export protein, PEP-CTERM sytem-associated. This protein family belongs to the larger set of polysaccharide biosynthesis/export proteins described by Pfam model pfam02563. Members of this family are variable in either containing of lacking a 78-residue insert, but appear to fall within a single clade, nevertheless, where the regions in which the gene is found encode components of the PEP-CTERM/EpsH proposed exosortase protein sorting system.
Probab=57.41 E-value=5.9 Score=34.76 Aligned_cols=17 Identities=41% Similarity=0.923 Sum_probs=14.8
Q ss_pred EEEEEcCCCeeeeCCCc
Q psy13797 167 LTVTLEPGDLLYLPRGY 183 (339)
Q Consensus 167 ~e~~L~pGDvLYiPrG~ 183 (339)
.++.|+|||++|+|+.+
T Consensus 148 ~n~~L~~gD~I~Vp~~~ 164 (165)
T TIGR03027 148 ANVELKPGDVLIIPESW 164 (165)
T ss_pred CCceeCCCCEEEEeccc
Confidence 45889999999999875
No 77
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit. The holoenzyme has the activity (1.14.11.2 from EC) catalysing the reaction: Procollagen L-proline + 2-oxoglutarate + O2 = procollagen trans-4-hydroxy-L-proline + succinate + CO2. The full enzyme consists of a alpha2 beta2 complex with the alpha subunit contributing most of the parts of the active site []. The family also includes lysyl hydrolases, isopenicillin synthases and AlkB. ; GO: 0016491 oxidoreductase activity, 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process; PDB: 3ON7_D 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A ....
Probab=55.14 E-value=8.4 Score=30.12 Aligned_cols=76 Identities=26% Similarity=0.420 Sum_probs=38.5
Q ss_pred cceEEeCCCCCCCCCCcccC--CCc-EEEE-------EEeEEEEEEeCCCCCCCCCCCCCCCCCCCCcCCCCcEEEEEcC
Q psy13797 104 GANTYQTPPTAQGFAPHYDD--IEA-FILQ-------LEGKKKWKVYLPRMVDEYLPRYSSPNFSQEEIGTPILTVTLEP 173 (339)
Q Consensus 104 ~~n~Y~tp~gs~gf~~H~D~--~dv-fvlQ-------l~G~K~W~l~~p~~~~~~lp~~~~~~~~~~~~~~~~~e~~L~p 173 (339)
.+|-|-.+.+..|+++|+|. .-+ +++| +...+.|.-.++ .+. .+++..
T Consensus 5 ~~~~Y~~~~~~~~~~~H~D~~~~~~Til~~~~~~gL~~~~~~~~~~v~~---------------------~~~-~~~v~~ 62 (98)
T PF03171_consen 5 RLNRYPPPENGVGIGPHTDDEDGLLTILFQDEVGGLQVRDDGEWVDVPP---------------------PPG-GFIVNF 62 (98)
T ss_dssp EEEEE-SCCGCEEEEEEEES--SSEEEEEETSTS-EEEEETTEEEE-------------------------TT-CEEEEE
T ss_pred EEEECCCcccCCceeCCCcCCCCeEEEEecccchheeccccccccCccC---------------------ccc-eeeeec
Confidence 34556556677789999999 432 2333 222222222221 122 588999
Q ss_pred CCeee-eCCC----ceeeeecCCCcceeeeeec
Q psy13797 174 GDLLY-LPRG----YIHQASTVTNEHSLHVTIS 201 (339)
Q Consensus 174 GDvLY-iPrG----~~H~a~s~~~~~SlhlT~~ 201 (339)
||+|- +.-| ++|.+.....+.-+++++-
T Consensus 63 G~~l~~~t~g~~~~~~HrV~~~~~~~R~s~~~f 95 (98)
T PF03171_consen 63 GDALEILTNGRYPATLHRVVPPTEGERYSLTFF 95 (98)
T ss_dssp BHHHHHHTTTSS----EEEE--STS-EEEEEEE
T ss_pred eeeeecccCCccCCceeeeEcCCCCCEEEEEEE
Confidence 99663 3333 7899999754555666553
No 78
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues. Mammalian enzymes catalyse hydroxylation of collagen, for example. Prokaryotic enzymes might catalyse hydroxylation of antibiotic peptides. These are 2-oxoglutarate-dependent dioxygenases, requiring 2-oxoglutarate and dioxygen as cosubstrates and ferrous iron as a cofactor.
Probab=53.70 E-value=90 Score=27.11 Aligned_cols=103 Identities=22% Similarity=0.393 Sum_probs=53.3
Q ss_pred chHHHHHHHHHHHhcCc---c----cceEEeCCCCCCCCCCcccCCCcEEEEEEeEEE--EEEeCCCCCCCCCCCCCCCC
Q psy13797 86 KPLQQLNASLQELFGCF---V----GANTYQTPPTAQGFAPHYDDIEAFILQLEGKKK--WKVYLPRMVDEYLPRYSSPN 156 (339)
Q Consensus 86 ~~l~~~~~~Le~~~g~~---v----~~n~Y~tp~gs~gf~~H~D~~dvfvlQl~G~K~--W~l~~p~~~~~~lp~~~~~~ 156 (339)
+-...+...++..++.. . ...+.--.+| +.|.+|+|....-. .|.+. +.+|-..... ...-.
T Consensus 59 ~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Y~~g-~~~~~H~D~~~~~~---~~~r~~T~~~yLn~~~~-----GG~~~ 129 (178)
T smart00702 59 LVIERIRQRLADFLGLLRGLPLSAEDAQVARYGPG-GHYGPHVDNFEDDE---NGDRIATFLLYLNDVEE-----GGELV 129 (178)
T ss_pred HHHHHHHHHHHHHHCCCchhhccCcceEEEEECCC-CcccCcCCCCCCCC---CCCeEEEEEEEeccCCc-----CceEE
Confidence 44456666777666654 1 1223222344 35789999764211 12222 3334332100 00001
Q ss_pred CCCCcCCCCcEEEEEcCCCeeeeCCC---ceeeeecCCCcceeee
Q psy13797 157 FSQEEIGTPILTVTLEPGDLLYLPRG---YIHQASTVTNEHSLHV 198 (339)
Q Consensus 157 ~~~~~~~~~~~e~~L~pGDvLYiPrG---~~H~a~s~~~~~Slhl 198 (339)
|..... .....+.-++|++|++|.+ .+|.+.....+.-+.+
T Consensus 130 f~~~~~-~~~~~v~P~~G~~v~f~~~~~~~~H~v~pv~~G~r~~~ 173 (178)
T smart00702 130 FPGLGL-MVCATVKPKKGDLLFFPSGRGRSLHGVCPVTRGSRWAI 173 (178)
T ss_pred ecCCCC-ccceEEeCCCCcEEEEeCCCCCccccCCcceeCCEEEE
Confidence 111110 2345788889999999986 8999988754433333
No 79
>TIGR02451 anti_sig_ChrR anti-sigma factor, putative, ChrR family. The member of this family from Rhodobacter sphaeroides has been shown both to form a complex with sigma(E) and to negatively regulate tetrapyrrole biosynthesis. This protein likely contains (at least) two distinct functional domains; several smaller homologs (excluded by the model) show homology only to the C-terminal, including a motif PxHxHxGxE.
Probab=53.38 E-value=53 Score=30.30 Aligned_cols=24 Identities=25% Similarity=0.183 Sum_probs=21.3
Q ss_pred EEEcCCCeeeeCCCceeeeecCCC
Q psy13797 169 VTLEPGDLLYLPRGYIHQASTVTN 192 (339)
Q Consensus 169 ~~L~pGDvLYiPrG~~H~a~s~~~ 192 (339)
.+..+||.+.+|.|.-|++.+.++
T Consensus 163 g~y~~Gd~i~~p~~~~H~p~a~~~ 186 (215)
T TIGR02451 163 GVYGVGDFEEADGSVQHQPRTVSG 186 (215)
T ss_pred CccCCCeEEECCCCCCcCcccCCC
Confidence 456799999999999999999865
No 80
>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=53.31 E-value=43 Score=30.26 Aligned_cols=26 Identities=27% Similarity=0.488 Sum_probs=22.8
Q ss_pred CcEEEEEcCCCeeeeCCCceeeeecC
Q psy13797 165 PILTVTLEPGDLLYLPRGYIHQASTV 190 (339)
Q Consensus 165 ~~~e~~L~pGDvLYiPrG~~H~a~s~ 190 (339)
+.+.+.+++||+|-||+|+.|+-...
T Consensus 116 ~~~~i~c~~gDLI~vP~gi~HwFtlt 141 (181)
T COG1791 116 KVYQIRCEKGDLISVPPGIYHWFTLT 141 (181)
T ss_pred cEEEEEEccCCEEecCCCceEEEEcc
Confidence 45688999999999999999998764
No 81
>PRK11171 hypothetical protein; Provisional
Probab=52.74 E-value=59 Score=30.88 Aligned_cols=27 Identities=15% Similarity=0.101 Sum_probs=23.6
Q ss_pred cEEEEEcCCCeeeeCCCceeeeecCCC
Q psy13797 166 ILTVTLEPGDLLYLPRGYIHQASTVTN 192 (339)
Q Consensus 166 ~~e~~L~pGDvLYiPrG~~H~a~s~~~ 192 (339)
.....|++||+||+|.+..|.-.+.++
T Consensus 222 ~~~~~l~~GD~i~~~~~~~h~~~N~g~ 248 (266)
T PRK11171 222 NDWVEVEAGDFIWMRAYCPQACYAGGP 248 (266)
T ss_pred CEEEEeCCCCEEEECCCCCEEEECCCC
Confidence 347899999999999999999998643
No 82
>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=52.00 E-value=26 Score=34.39 Aligned_cols=50 Identities=22% Similarity=0.321 Sum_probs=42.4
Q ss_pred CCcccCCCcEEEEEEeEEEEEEeCCCCCCCCCCCCCCCCCCCCcCCCCcEEEEEcCCCeeeeCCCceeeeecCC
Q psy13797 118 APHYDDIEAFILQLEGKKKWKVYLPRMVDEYLPRYSSPNFSQEEIGTPILTVTLEPGDLLYLPRGYIHQASTVT 191 (339)
Q Consensus 118 ~~H~D~~dvfvlQl~G~K~W~l~~p~~~~~~lp~~~~~~~~~~~~~~~~~e~~L~pGDvLYiPrG~~H~a~s~~ 191 (339)
+.|--....+=+-++|+-.|.+-.-. ...+++||.|.-|.+.||.--..+
T Consensus 106 psHrHsqsAlRFvveG~Ga~T~VdGe------------------------r~~M~~GDfilTP~w~wHdHgn~g 155 (351)
T COG3435 106 PSHRHNQSALRFVVEGKGAYTVVDGE------------------------RTPMEAGDFILTPAWTWHDHGNEG 155 (351)
T ss_pred CcccccccceEEEEeccceeEeecCc------------------------eeeccCCCEEEccCceeccCCCCC
Confidence 78999999999999999999886541 477889999999999999876654
No 83
>PF07710 P53_tetramer: P53 tetramerisation motif; InterPro: IPR010991 The p53 protein is a tetrameric transcription factor that plays a central role in the prevention of neoplastic transformation []. Oligomerization appears to be essential for the tumour suppressing activity of p53. p53 can be divided into different functional domains: an N-terminal transactivation domain, a proline-rich domain, a DNA-binding domain (IPR008967 from INTERPRO), a tetramerisation domain and a C-terminal regulatory region. The tetramerisation domain of human p53 extends from residues 325 to 356, and has a 4-helical bundle fold. The tetramerisation domain is essential for DNA binding, protein-protein interactions, post-translational modifications, and p53 degradation [].; GO: 0051262 protein tetramerization; PDB: 3Q06_B 1SAL_B 1OLH_B 1AIE_A 1PES_D 1SAK_D 1SAE_B 2J11_D 1PET_A 1OLG_A ....
Probab=51.41 E-value=3.4 Score=28.66 Aligned_cols=18 Identities=39% Similarity=0.848 Sum_probs=15.3
Q ss_pred cCCCcEEEEEEeEEEEEE
Q psy13797 122 DDIEAFILQLEGKKKWKV 139 (339)
Q Consensus 122 D~~dvfvlQl~G~K~W~l 139 (339)
++.++|.+||.|+++|-+
T Consensus 6 ~D~E~ftL~VrGRe~yE~ 23 (42)
T PF07710_consen 6 DDEEVFTLQVRGRERYEM 23 (42)
T ss_dssp SCCCEEEEEEESHHHHHH
T ss_pred CCCCEEEEEEecHHHHHH
Confidence 778999999999987644
No 84
>COG4297 Uncharacterized protein containing double-stranded beta helix domain [Function unknown]
Probab=50.26 E-value=36 Score=29.72 Aligned_cols=63 Identities=21% Similarity=0.214 Sum_probs=39.3
Q ss_pred ceEEeCCCCCCCCCCc-ccCC-CcEEEEEEeEEEEEEeCCCCCCCCCCCCCCCCCCCCcCCCCcEEEEEcCCCeeeeCCC
Q psy13797 105 ANTYQTPPTAQGFAPH-YDDI-EAFILQLEGKKKWKVYLPRMVDEYLPRYSSPNFSQEEIGTPILTVTLEPGDLLYLPRG 182 (339)
Q Consensus 105 ~n~Y~tp~gs~gf~~H-~D~~-dvfvlQl~G~K~W~l~~p~~~~~~lp~~~~~~~~~~~~~~~~~e~~L~pGDvLYiPrG 182 (339)
+|-|.+.=..+-|+.| |-.. +-.++-++|+-.-.+-.+.- -+..+..||+|.||.|
T Consensus 43 ~~gW~gsW~g~Vf~yHHYHs~aHEVl~vlrgqA~l~iGG~~G----------------------~el~v~~GDvlliPAG 100 (163)
T COG4297 43 ANGWFGSWRGGVFNYHHYHSGAHEVLGVLRGQAGLQIGGADG----------------------QELEVGEGDVLLIPAG 100 (163)
T ss_pred hcCCcccccccccccccccCCcceEEEEecceeEEEecCCCC----------------------ceeeecCCCEEEEecC
Confidence 3444432222235553 3322 22455578888888776632 2577889999999999
Q ss_pred ceeeeec
Q psy13797 183 YIHQAST 189 (339)
Q Consensus 183 ~~H~a~s 189 (339)
.=|.--.
T Consensus 101 vGH~rl~ 107 (163)
T COG4297 101 VGHCRLH 107 (163)
T ss_pred ccccccc
Confidence 9998643
No 85
>PRK10572 DNA-binding transcriptional regulator AraC; Provisional
Probab=49.61 E-value=56 Score=30.63 Aligned_cols=23 Identities=39% Similarity=0.671 Sum_probs=20.2
Q ss_pred EEEEcCCCeeeeCCCceeeeecC
Q psy13797 168 TVTLEPGDLLYLPRGYIHQASTV 190 (339)
Q Consensus 168 e~~L~pGDvLYiPrG~~H~a~s~ 190 (339)
...++|||++++|+|..|.....
T Consensus 68 ~~~~~~g~~i~i~p~~~h~~~~~ 90 (290)
T PRK10572 68 AFVCRPGDLLLFPPGEIHHYGRH 90 (290)
T ss_pred eEecCCCCEEEECCCCceeeccC
Confidence 58999999999999999986554
No 86
>KOG3995|consensus
Probab=49.26 E-value=1e+02 Score=28.92 Aligned_cols=63 Identities=21% Similarity=0.313 Sum_probs=50.8
Q ss_pred EEeCCCCCCCCCCcccCCCcEEEEEEeEEEEEEeCCCCCCCCCCCCCCCCCCCCcCCCCcEEEEEcCCCeeeeCCCceee
Q psy13797 107 TYQTPPTAQGFAPHYDDIEAFILQLEGKKKWKVYLPRMVDEYLPRYSSPNFSQEEIGTPILTVTLEPGDLLYLPRGYIHQ 186 (339)
Q Consensus 107 ~Y~tp~gs~gf~~H~D~~dvfvlQl~G~K~W~l~~p~~~~~~lp~~~~~~~~~~~~~~~~~e~~L~pGDvLYiPrG~~H~ 186 (339)
+|++.|+... ..|...-+-|..|..|.---++....+ ..+++++.||+..+|....|.
T Consensus 37 m~VGGPN~Rk-dyHieegeE~FyQ~KGdMvLKVie~g~---------------------~rDivI~qGe~flLParVpHS 94 (279)
T KOG3995|consen 37 MFVGGPNTRK-DYHIEEGEEVFYQLKGDMVLKVLEQGK---------------------HRDVVIRQGEIFLLPARVPHS 94 (279)
T ss_pred EEecCCCccc-ccccCCcchhheeecCceEEeeeccCc---------------------ceeeEEecCcEEEeccCCCCC
Confidence 6888887764 689999988999999987777765432 237999999999999999999
Q ss_pred eecCC
Q psy13797 187 ASTVT 191 (339)
Q Consensus 187 a~s~~ 191 (339)
..-..
T Consensus 95 PqRFa 99 (279)
T KOG3995|consen 95 PQRFA 99 (279)
T ss_pred hhhhc
Confidence 87654
No 87
>PF11699 CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B.
Probab=49.19 E-value=13 Score=29.57 Aligned_cols=24 Identities=17% Similarity=0.362 Sum_probs=17.2
Q ss_pred EEEEcCCCeeeeCCCceeeeecCC
Q psy13797 168 TVTLEPGDLLYLPRGYIHQASTVT 191 (339)
Q Consensus 168 e~~L~pGDvLYiPrG~~H~a~s~~ 191 (339)
.+++.+||+.|||||=.-..+...
T Consensus 52 ~f~v~~G~~F~VP~gN~Y~i~N~~ 75 (85)
T PF11699_consen 52 SFVVTKGGSFQVPRGNYYSIKNIG 75 (85)
T ss_dssp EEEEETT-EEEE-TT-EEEEEE-S
T ss_pred EEEEeCCCEEEECCCCEEEEEECC
Confidence 699999999999999777777654
No 88
>KOG1356|consensus
Probab=48.71 E-value=5 Score=43.93 Aligned_cols=31 Identities=26% Similarity=0.379 Sum_probs=27.8
Q ss_pred CCCcEEEEEcCCCeeeeCCCceeeeecCCCc
Q psy13797 163 GTPILTVTLEPGDLLYLPRGYIHQASTVTNE 193 (339)
Q Consensus 163 ~~~~~e~~L~pGDvLYiPrG~~H~a~s~~~~ 193 (339)
|...+.++=..||.+|||.|..|||+.+-.|
T Consensus 795 GVe~WtfvQ~LGdAVfIPAGaPHQVrNLkSC 825 (889)
T KOG1356|consen 795 GVEPWTFVQFLGDAVFIPAGAPHQVRNLKSC 825 (889)
T ss_pred CCCccchhhcccceEEecCCCcHHhhhhhhH
Confidence 6678899999999999999999999998555
No 89
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A.
Probab=48.17 E-value=25 Score=27.95 Aligned_cols=28 Identities=29% Similarity=0.435 Sum_probs=18.6
Q ss_pred CCcEEEEEcCCCeeeeCCCceeeeecCC
Q psy13797 164 TPILTVTLEPGDLLYLPRGYIHQASTVT 191 (339)
Q Consensus 164 ~~~~e~~L~pGDvLYiPrG~~H~a~s~~ 191 (339)
.....+.-++||++.+|.-.+|.+....
T Consensus 63 ~~~~~~~p~~G~lvlFPs~l~H~v~p~~ 90 (101)
T PF13759_consen 63 SPYYIVEPEEGDLVLFPSWLWHGVPPNN 90 (101)
T ss_dssp -SEEEE---TTEEEEEETTSEEEE----
T ss_pred CceEEeCCCCCEEEEeCCCCEEeccCcC
Confidence 4667888999999999999999998864
No 90
>COG5285 Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=47.06 E-value=55 Score=31.98 Aligned_cols=26 Identities=31% Similarity=0.399 Sum_probs=23.5
Q ss_pred cEEEEEcCCCeeeeCCCceeeeecCC
Q psy13797 166 ILTVTLEPGDLLYLPRGYIHQASTVT 191 (339)
Q Consensus 166 ~~e~~L~pGDvLYiPrG~~H~a~s~~ 191 (339)
...+.|++||+|++=.-.||.|.+..
T Consensus 192 ~~pv~lekGDallF~~~L~HaA~aNr 217 (299)
T COG5285 192 AVPVELEKGDALLFNGSLWHAAGANR 217 (299)
T ss_pred ceeeeecCCCEEEEcchhhhhhhcCC
Confidence 56799999999999999999998864
No 91
>PF01238 PMI_typeI: Phosphomannose isomerase type I; InterPro: IPR001250 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. Type I includes eukaryotic PMI and the enzyme encoded by the manA gene in enterobacteria. PMI has a bound zinc ion, which is essential for activity. A crystal structure of PMI from Candida albicans shows that the enzyme has three distinct domains []. The active site lies in the central domain, contains a single essential zinc atom, and forms a deep, open cavity of suitable dimensions to contain M6P or F6P The central domain is flanked by a helical domain on one side and a jelly-roll like domain on the other.; GO: 0004476 mannose-6-phosphate isomerase activity, 0008270 zinc ion binding, 0005975 carbohydrate metabolic process; PDB: 1PMI_A 1QWR_B 1ZX5_A 3H1Y_A 2WFP_A 3H1M_A 3H1W_A.
Probab=42.13 E-value=13 Score=37.30 Aligned_cols=22 Identities=36% Similarity=0.697 Sum_probs=18.0
Q ss_pred EEEEcCCCeeeeCCCceeeeec
Q psy13797 168 TVTLEPGDLLYLPRGYIHQAST 189 (339)
Q Consensus 168 e~~L~pGDvLYiPrG~~H~a~s 189 (339)
-++|+||+.+|+|.|.+|.-..
T Consensus 251 ~v~L~pGeaifl~a~~~HAYl~ 272 (373)
T PF01238_consen 251 YVELQPGEAIFLPAGEPHAYLS 272 (373)
T ss_dssp EEEE-TT-EEEEHTTHHEEEEE
T ss_pred EEEecCCceEEecCCCcccccc
Confidence 4689999999999999998876
No 92
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional
Probab=38.88 E-value=38 Score=31.70 Aligned_cols=36 Identities=25% Similarity=0.323 Sum_probs=28.3
Q ss_pred cEEEEEcCCCeeeeCCCceeeeecCCCcceeeeeec
Q psy13797 166 ILTVTLEPGDLLYLPRGYIHQASTVTNEHSLHVTIS 201 (339)
Q Consensus 166 ~~e~~L~pGDvLYiPrG~~H~a~s~~~~~SlhlT~~ 201 (339)
...+.+++||+|.+|...+|.+...+.+.-+.++.-
T Consensus 140 ~~~Vkp~aG~~vlfps~~lH~v~pVt~G~R~~~~~W 175 (226)
T PRK05467 140 EHRVKLPAGDLVLYPSTSLHRVTPVTRGVRVASFFW 175 (226)
T ss_pred cEEEecCCCeEEEECCCCceeeeeccCccEEEEEec
Confidence 357899999999999999999999766644444443
No 93
>PF15138 Syncollin: Syncollin
Probab=38.82 E-value=24 Score=29.28 Aligned_cols=36 Identities=31% Similarity=0.568 Sum_probs=25.8
Q ss_pred EEEEEcCCCee-eeCCCceeeeecCCCcceeeeeecc
Q psy13797 167 LTVTLEPGDLL-YLPRGYIHQASTVTNEHSLHVTISV 202 (339)
Q Consensus 167 ~e~~L~pGDvL-YiPrG~~H~a~s~~~~~SlhlT~~~ 202 (339)
.+..++|||=| |||.||-|.+.++--..--.||+-.
T Consensus 35 ~~l~v~pg~DlPylPs~w~n~iSSlvV~~RCeLtVWS 71 (112)
T PF15138_consen 35 AELSVEPGDDLPYLPSGWANKISSLVVAPRCELTVWS 71 (112)
T ss_pred cEEeecCCCCCCcCCccccCeeeeEEEcCceEEEEEe
Confidence 47889999766 9999999999887323334455543
No 94
>COG3145 AlkB Alkylated DNA repair protein [DNA replication, recombination, and repair]
Probab=36.42 E-value=2.1e+02 Score=26.22 Aligned_cols=104 Identities=24% Similarity=0.220 Sum_probs=61.0
Q ss_pred hhhhhhccccc--eeecCCcCCCchHHHHHHHHHHHhcCcc------cceEEeCCCCCCCCCCcccCCC------cEEEE
Q psy13797 65 IVWDHYREGCS--IRFLNPQTYIKPLQQLNASLQELFGCFV------GANTYQTPPTAQGFAPHYDDIE------AFILQ 130 (339)
Q Consensus 65 ~~~~~~~~G~t--l~l~~~~~~~~~l~~~~~~Le~~~g~~v------~~n~Y~tp~gs~gf~~H~D~~d------vfvlQ 130 (339)
.-|.....|+- .....+...+|.+-.+...++...|... -+|.|--. .++++|-|..+ +..|=
T Consensus 62 ~~W~~d~~gy~y~~~~p~~~~p~p~l~~~~~~~~~~~g~~~~~~ea~Lvn~Y~pG---d~ig~HqD~~e~~~~~~v~slS 138 (194)
T COG3145 62 LGWVTDRRGYRYSLRSPLTGKPWPPLLALFHDLFGAAGYPFEGPEAVLVNRYRPG---ASIGWHQDKDEEDDRPPVASLS 138 (194)
T ss_pred cceecccccccccccccCCCCCCCccHHHHHHHHHHhcCCCCChhheeEEeccCC---CccccccccccccCCCceEEEe
Confidence 34444455553 3344444445666677777777777543 34877654 35779999652 23333
Q ss_pred EEeEEEEEEeCCCCCCCCCCCCCCCCCCCCcCCCCcEEEEEcCCCeeee---CCCceeeeec
Q psy13797 131 LEGKKKWKVYLPRMVDEYLPRYSSPNFSQEEIGTPILTVTLEPGDLLYL---PRGYIHQAST 189 (339)
Q Consensus 131 l~G~K~W~l~~p~~~~~~lp~~~~~~~~~~~~~~~~~e~~L~pGDvLYi---PrG~~H~a~s 189 (339)
+-....+++-.... ..+..++.|++||++.+ .|-.||+...
T Consensus 139 Lg~~~~F~~~~~~r------------------~~~~~~~~L~~Gdvvvm~G~~r~~~~h~~p 182 (194)
T COG3145 139 LGAPCIFRLRGRRR------------------RGPGLRLRLEHGDVVVMGGPSRLAWHHIIP 182 (194)
T ss_pred cCCCeEEEeccccC------------------CCCceeEEecCCCEEEecCCcccccccccc
Confidence 33344444433311 24567899999999987 5667885554
No 95
>PF05995 CDO_I: Cysteine dioxygenase type I; InterPro: IPR010300 Cysteine dioxygenase type I (1.13.11.20 from EC) converts cysteine to cysteinesulphinic acid and is the rate-limiting step in sulphate production.; GO: 0005506 iron ion binding, 0017172 cysteine dioxygenase activity, 0046439 L-cysteine metabolic process, 0055114 oxidation-reduction process; PDB: 2IC1_A 3EQE_B 3ELN_A 2B5H_A 2GH2_A 2Q4S_A 2ATF_A 2GM6_A 3USS_B.
Probab=36.06 E-value=1.2e+02 Score=26.87 Aligned_cols=78 Identities=18% Similarity=0.069 Sum_probs=43.5
Q ss_pred eCCCCCCCCCCcccC-CCcEEEEEEeEEEEEEeCCCCCCCCCCCCCCCCCCCCcCCCCcEEEEEcCCCeeeeCCCceeee
Q psy13797 109 QTPPTAQGFAPHYDD-IEAFILQLEGKKKWKVYLPRMVDEYLPRYSSPNFSQEEIGTPILTVTLEPGDLLYLPRGYIHQA 187 (339)
Q Consensus 109 ~tp~gs~gf~~H~D~-~dvfvlQl~G~K~W~l~~p~~~~~~lp~~~~~~~~~~~~~~~~~e~~L~pGDvLYiPrG~~H~a 187 (339)
++.+.+|+.++|=-. .-.++..+.|.=+=..|...... ..+.........+.+|.....+.+.+|++
T Consensus 80 l~W~pGq~S~IHDH~~s~g~~~vl~G~l~e~~y~~~~~~------------~~~~~~~~~~~~~~~g~~~~~~~~~iH~v 147 (175)
T PF05995_consen 80 LCWPPGQRSPIHDHGGSWGWVKVLSGELEETRYRRPDDG------------GAPLELVGRERLLPGGVTYIFDPHGIHRV 147 (175)
T ss_dssp EEE-TT-B--EEE-TTSEEEEEEEESEEEEEEEEESTSS------------S-EEEECEEEEEETTTEEEEBTTTBEEEE
T ss_pred EEeCCCCcCCCCCCCCceEEEEEecceEEEEEeccCCcc------------cCcccccCceEecCCCeEEecCCCCeEEe
Confidence 344444454677443 34688899999777777764320 00011122345677777778899999999
Q ss_pred ecCC-C--cceeee
Q psy13797 188 STVT-N--EHSLHV 198 (339)
Q Consensus 188 ~s~~-~--~~Slhl 198 (339)
.+.. + +.|||+
T Consensus 148 ~n~s~~~~avSLHv 161 (175)
T PF05995_consen 148 ENPSGDEPAVSLHV 161 (175)
T ss_dssp EES-SSS-EEEEEE
T ss_pred ccCCCCCCEEEEEE
Confidence 7543 2 445554
No 96
>TIGR03028 EpsE polysaccharide export protein EpsE. Sequences in this family of proteins are members of a polysaccharide export protein family (pfam02563) which includes the wza protein from E.coli. This family of proteins are homologous to the EpsE protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=34.20 E-value=20 Score=33.34 Aligned_cols=14 Identities=21% Similarity=0.684 Sum_probs=12.7
Q ss_pred EEcCCCeeeeCCCc
Q psy13797 170 TLEPGDLLYLPRGY 183 (339)
Q Consensus 170 ~L~pGDvLYiPrG~ 183 (339)
.|+|||++|+|..|
T Consensus 225 ~l~~gDii~V~~s~ 238 (239)
T TIGR03028 225 LVQPDDVIYVRESL 238 (239)
T ss_pred ccCCCCEEEEeCcc
Confidence 49999999999887
No 97
>COG2164 Uncharacterized conserved protein [Function unknown]
Probab=33.05 E-value=20 Score=29.79 Aligned_cols=16 Identities=44% Similarity=0.804 Sum_probs=13.9
Q ss_pred EEEcCCCeeeeCCCce
Q psy13797 169 VTLEPGDLLYLPRGYI 184 (339)
Q Consensus 169 ~~L~pGDvLYiPrG~~ 184 (339)
-+++|||+=|.|+|..
T Consensus 63 dvve~GDv~YWpPGkA 78 (126)
T COG2164 63 DVVEPGDVSYWPPGKA 78 (126)
T ss_pred cccCcccccccCCCcE
Confidence 5678999999999964
No 98
>PF10014 2OG-Fe_Oxy_2: 2OG-Fe dioxygenase; InterPro: IPR018724 Members of this family of hypothetical bacterial proteins have no known function. Some are described as putative biofilm formation or putative agglutination proteins. ; PDB: 3PL0_B.
Probab=32.57 E-value=80 Score=28.62 Aligned_cols=59 Identities=19% Similarity=0.273 Sum_probs=34.0
Q ss_pred CcccCCCcEEEEEEeEEEEEEeCCCCCCCCCCCCCCCCCCCCcCCCCcEEEEEcCCCeeeeC-CCceeeeecC
Q psy13797 119 PHYDDIEAFILQLEGKKKWKVYLPRMVDEYLPRYSSPNFSQEEIGTPILTVTLEPGDLLYLP-RGYIHQASTV 190 (339)
Q Consensus 119 ~H~D~~dvfvlQl~G~K~W~l~~p~~~~~~lp~~~~~~~~~~~~~~~~~e~~L~pGDvLYiP-rG~~H~a~s~ 190 (339)
.|-|..|...+-+.|++--.=... .+ ...+...+.....++|||.|.+- +-.||.|..+
T Consensus 118 iH~DG~d~v~~~li~r~Ni~GG~s-----~i--------~~~~~~~~~~~~l~~p~d~l~~~D~~~~H~vtpI 177 (195)
T PF10014_consen 118 IHRDGVDFVFIHLINRHNIEGGES-----QI--------YDNDKEILFFFTLLEPGDTLLVDDRRVWHYVTPI 177 (195)
T ss_dssp SB--SSSEEEEEEEEEESEEE--E-----EE--------EETTSSEEEEE---STTEEEEEETTTEEEEE--E
T ss_pred ccCCCCCEEEEEEEcCCCccCceE-----EE--------EeCCCCcceEEEecCCCCEEEEeCCcceECCCce
Confidence 799999988888888754411100 01 00111235567889999999999 8999999886
No 99
>PRK05341 homogentisate 1,2-dioxygenase; Provisional
Probab=32.52 E-value=34 Score=35.13 Aligned_cols=24 Identities=25% Similarity=0.580 Sum_probs=20.6
Q ss_pred EEEEcCCCeeeeCCCceeeeecCC
Q psy13797 168 TVTLEPGDLLYLPRGYIHQASTVT 191 (339)
Q Consensus 168 e~~L~pGDvLYiPrG~~H~a~s~~ 191 (339)
...++|||+++||||+.+.+.-.+
T Consensus 173 ~L~v~pgei~VIPRG~~frv~l~~ 196 (438)
T PRK05341 173 VLDVEPGEIAVIPRGVKFRVELPD 196 (438)
T ss_pred ceEecCCCEEEEcCccEEEEecCC
Confidence 467889999999999999998643
No 100
>PF05721 PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro: IPR008775 This family is made up of several eukaryotic phytanoyl-CoA dioxygenase (PhyH) proteins as well as a number of bacterial deoxygenases. PhyH is a peroxisomal enzyme catalysing the first step of phytanic acid alpha-oxidation. PhyH deficiency causes Refsum's disease (RD) which is an inherited neurological syndrome biochemically characterised by the accumulation of phytanic acid in plasma and tissues [].; PDB: 3GJA_A 3EMR_A 3OBZ_A 2OPW_A 3NNL_B 3NNF_A 3NNM_B 3NNJ_A 2FCV_B 2FCU_A ....
Probab=32.44 E-value=36 Score=29.26 Aligned_cols=27 Identities=22% Similarity=0.466 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCeeeeCCCceeeeecC
Q psy13797 164 TPILTVTLEPGDLLYLPRGYIHQASTV 190 (339)
Q Consensus 164 ~~~~e~~L~pGDvLYiPrG~~H~a~s~ 190 (339)
.....+.++|||+|++-...||.....
T Consensus 177 ~~~~~~~~~~Gdvl~~~~~~~H~s~~N 203 (211)
T PF05721_consen 177 DEWVPVPMKAGDVLFFHSRLIHGSGPN 203 (211)
T ss_dssp SGCEEE-BSTTEEEEEETTSEEEEE-B
T ss_pred CceEEeecCCCeEEEEcCCccccCCCC
Confidence 466789999999999999999998774
No 101
>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]
Probab=32.33 E-value=2e+02 Score=27.26 Aligned_cols=67 Identities=25% Similarity=0.298 Sum_probs=45.9
Q ss_pred eEEeCCCC-CCCCCCccc-CCCcEEEEEEeEEEEEEeCCCCCCCCCCCCCCCCCCCCcCCCCcEEEEEcCCCeeeeCCCc
Q psy13797 106 NTYQTPPT-AQGFAPHYD-DIEAFILQLEGKKKWKVYLPRMVDEYLPRYSSPNFSQEEIGTPILTVTLEPGDLLYLPRGY 183 (339)
Q Consensus 106 n~Y~tp~g-s~gf~~H~D-~~dvfvlQl~G~K~W~l~~p~~~~~~lp~~~~~~~~~~~~~~~~~e~~L~pGDvLYiPrG~ 183 (339)
-+=+.|+| ++ .+--| ..+.|+.-++|+-.-.+-. ....|++|+-+|+|+|-
T Consensus 65 ive~~p~GGs~--~~e~d~~ae~~lfVv~Ge~tv~~~G-------------------------~th~l~eggyaylPpgs 117 (264)
T COG3257 65 IVELHPNGGSQ--RPEGDEGAETFLFVVSGEITVKAEG-------------------------KTHALREGGYAYLPPGS 117 (264)
T ss_pred eEEECCCCCCC--CCCCCCcceEEEEEEeeeEEEEEcC-------------------------eEEEeccCCeEEeCCCC
Confidence 35555655 44 36666 4578888888876665532 26889999999999999
Q ss_pred eeeeecCCCc-ceeeee
Q psy13797 184 IHQASTVTNE-HSLHVT 199 (339)
Q Consensus 184 ~H~a~s~~~~-~SlhlT 199 (339)
-|..+..... .-+|+-
T Consensus 118 ~~~~~N~~~~~~rfhw~ 134 (264)
T COG3257 118 GWTLRNAQKEDSRFHWI 134 (264)
T ss_pred cceEeeccCCceEEEEE
Confidence 9999864322 345543
No 102
>TIGR03028 EpsE polysaccharide export protein EpsE. Sequences in this family of proteins are members of a polysaccharide export protein family (pfam02563) which includes the wza protein from E.coli. This family of proteins are homologous to the EpsE protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=31.56 E-value=27 Score=32.54 Aligned_cols=16 Identities=25% Similarity=0.640 Sum_probs=14.1
Q ss_pred EEEEEcCCCeeeeCCC
Q psy13797 167 LTVTLEPGDLLYLPRG 182 (339)
Q Consensus 167 ~e~~L~pGDvLYiPrG 182 (339)
.++.|+|||++|+|+.
T Consensus 147 ~ni~L~~GD~I~V~~~ 162 (239)
T TIGR03028 147 ENILVAGGDIIYVDRA 162 (239)
T ss_pred CCcEEcCCCEEEEcCC
Confidence 3589999999999985
No 103
>PF04209 HgmA: homogentisate 1,2-dioxygenase; InterPro: IPR005708 Alkaptonuria (AKU), a rare hereditary disorder, was the first disease to be interpreted as an inborn error of metabolism. The deficiency causes homogentisic aciduria, ochronosis, and arthritis. AKU patients are deficient for homogentisate 1,2 dioxygenase (1.13.11.5 from EC), the enzyme that mediates the conversion of homogentisate to maleylacetoacetate; a step in the catabolism of both tyrosine and phenylalanine. Homogentisate + O(2) = 4-maleylacetoacetate. ; GO: 0004411 homogentisate 1,2-dioxygenase activity, 0006559 L-phenylalanine catabolic process, 0006570 tyrosine metabolic process, 0055114 oxidation-reduction process; PDB: 1EY2_A 1EYB_A.
Probab=31.05 E-value=35 Score=34.97 Aligned_cols=24 Identities=25% Similarity=0.533 Sum_probs=16.7
Q ss_pred EEEEcCCCeeeeCCCceeeeecCC
Q psy13797 168 TVTLEPGDLLYLPRGYIHQASTVT 191 (339)
Q Consensus 168 e~~L~pGDvLYiPrG~~H~a~s~~ 191 (339)
...++|||+++||||+.+.+...+
T Consensus 165 ~L~v~pGd~~VIPRG~~~rv~l~~ 188 (424)
T PF04209_consen 165 RLDVRPGDYVVIPRGTRFRVELPG 188 (424)
T ss_dssp EEEE-TTEEEEE-TT--EEEE-SS
T ss_pred eEEEcCCeEEEECCeeEEEEEeCC
Confidence 467999999999999999998873
No 104
>TIGR02219 phage_NlpC_fam putative phage cell wall peptidase, NlpC/P60 family. Members of this family show sequence similarity to members of the NlpC/P60 family described by Pfam model pfam00877 and by Anantharaman and Aravind (PubMed:12620121). The NlpC/P60 family includes a number of characterized bacterial cell wall hydrolases. Members of this related family are all found in prophage regions of bacterial genomes.
Probab=30.68 E-value=43 Score=28.36 Aligned_cols=29 Identities=24% Similarity=0.411 Sum_probs=19.5
Q ss_pred EEcCCCeeeeC----CCceeeeecCCCcceeee
Q psy13797 170 TLEPGDLLYLP----RGYIHQASTVTNEHSLHV 198 (339)
Q Consensus 170 ~L~pGDvLYiP----rG~~H~a~s~~~~~Slhl 198 (339)
.|+|||++|+- ++.-|-+..+++..=+|-
T Consensus 76 ~~qpGDlvff~~~~~~~~~HvGIy~G~g~~iHa 108 (134)
T TIGR02219 76 AAQPGDVLVFRWRPGAAAKHAAIAASPTRFIHA 108 (134)
T ss_pred cCCCCCEEEEeeCCCCCCcEEEEEeCCCcEEEE
Confidence 58999999983 235688877755433443
No 105
>PF07385 DUF1498: Protein of unknown function (DUF1498); InterPro: IPR010864 This family consists of several hypothetical bacterial proteins of around 225 residues in length. The function of this family is unknown.; PDB: 3MPB_B 3KMH_A.
Probab=30.06 E-value=53 Score=30.80 Aligned_cols=85 Identities=16% Similarity=0.116 Sum_probs=42.7
Q ss_pred eEEeCCCCCCCCCCcccCC--CcEEEEEEeEEEEEEeCCCCCCCCCCCCCCCCCCCC---cCCCCcEEEEEcCCCeeeeC
Q psy13797 106 NTYQTPPTAQGFAPHYDDI--EAFILQLEGKKKWKVYLPRMVDEYLPRYSSPNFSQE---EIGTPILTVTLEPGDLLYLP 180 (339)
Q Consensus 106 n~Y~tp~gs~gf~~H~D~~--dvfvlQl~G~K~W~l~~p~~~~~~lp~~~~~~~~~~---~~~~~~~e~~L~pGDvLYiP 180 (339)
-+-+...|.. .|.||-.. +-+|----|.=..+||....... ....+......+ ..-.+...++|.||.-+-+|
T Consensus 90 Kim~~~~~Q~-tP~H~H~~K~EDIINRGGG~L~i~l~~s~~~~~-~~~~~~v~V~~DG~~~t~~aG~~l~L~PGESiTL~ 167 (225)
T PF07385_consen 90 KIMIVREGQV-TPMHFHWKKMEDIINRGGGNLVIELYNSDPDGE-LDADTDVTVPVDGIRRTVPAGTQLRLNPGESITLP 167 (225)
T ss_dssp EEEEE-BT-E-EEEEEESS--EEEEEEEES-EEEEEEEB--TTS-SB-SS-EEEEETTEEEEE-TT-EEEE-TT-EEEE-
T ss_pred hheeccCCCc-CCcccCcchhhheeecCCceEEEEEEeccCCCc-cccCCCeEEecCCcEEEecCCceEEeCCCCeEeeC
Confidence 3444555544 37777744 55666666677777887643111 110110000000 01135668999999999999
Q ss_pred CCceeeeecCCC
Q psy13797 181 RGYIHQASTVTN 192 (339)
Q Consensus 181 rG~~H~a~s~~~ 192 (339)
+|.||.-....+
T Consensus 168 Pg~yH~Fw~e~g 179 (225)
T PF07385_consen 168 PGIYHWFWGEGG 179 (225)
T ss_dssp TTEEEEEEE-TT
T ss_pred CCCeeeEEecCC
Confidence 999999988643
No 106
>TIGR01015 hmgA homogentisate 1,2-dioxygenase. Missing in human disease alkaptonuria.
Probab=29.34 E-value=42 Score=34.42 Aligned_cols=23 Identities=22% Similarity=0.574 Sum_probs=20.4
Q ss_pred EEEEcCCCeeeeCCCceeeeecC
Q psy13797 168 TVTLEPGDLLYLPRGYIHQASTV 190 (339)
Q Consensus 168 e~~L~pGDvLYiPrG~~H~a~s~ 190 (339)
...++|||+++||||+.+.++-.
T Consensus 167 ~L~v~pgei~VIPRG~~frv~l~ 189 (429)
T TIGR01015 167 RLLVEPNEICVIPRGVRFRVTVL 189 (429)
T ss_pred ceEecCCCEEEecCccEEEEeeC
Confidence 36789999999999999999864
No 107
>TIGR02466 conserved hypothetical protein. This family consists of uncharacterized proteins in Caulobacter crescentus CB15, Bdellovibrio bacteriovorus HD100, Synechococcus sp. WH 8102 (2), Silicibacter pomeroyi DSS-3 (2), and Hyphomonas neptunium ATCC 15444. The context of nearby genes differs substantially between members and does point to any specific biological role.
Probab=28.55 E-value=66 Score=29.49 Aligned_cols=27 Identities=15% Similarity=0.192 Sum_probs=22.7
Q ss_pred CcEEEEEcCCCeeeeCCCceeeeecCC
Q psy13797 165 PILTVTLEPGDLLYLPRGYIHQASTVT 191 (339)
Q Consensus 165 ~~~e~~L~pGDvLYiPrG~~H~a~s~~ 191 (339)
+...+.-++||++.+|.-.+|.|....
T Consensus 160 ~~~~v~P~~G~lvlFPS~L~H~v~p~~ 186 (201)
T TIGR02466 160 RFVYVPPQEGRVLLFESWLRHEVPPNE 186 (201)
T ss_pred ccEEECCCCCeEEEECCCCceecCCCC
Confidence 444566699999999999999998874
No 108
>PLN02658 homogentisate 1,2-dioxygenase
Probab=28.34 E-value=45 Score=34.27 Aligned_cols=24 Identities=21% Similarity=0.638 Sum_probs=20.5
Q ss_pred EEEEcCCCeeeeCCCceeeeecCC
Q psy13797 168 TVTLEPGDLLYLPRGYIHQASTVT 191 (339)
Q Consensus 168 e~~L~pGDvLYiPrG~~H~a~s~~ 191 (339)
...++|||+++||||+.+.++-.+
T Consensus 166 ~L~v~pgei~VIPRG~~frv~l~~ 189 (435)
T PLN02658 166 KLQVSPGEIVVIPRGFRFAVDLPD 189 (435)
T ss_pred ceEecCCCEEEecCccEEEEecCC
Confidence 366799999999999999998643
No 109
>PF00877 NLPC_P60: NlpC/P60 family; InterPro: IPR000064 The Escherichia coli NLPC/Listeria P60 domain occurs at the C terminus of a number of different bacterial and viral proteins. The viral proteins are either described as tail assembly proteins or Gp19. In bacteria, the proteins are variously described as being putative tail component of prophage, invasin, invasion associated protein, putative lipoprotein, cell wall hydrolase, or putative endopeptidase. The E. coli NLPC/Listeria P60 domain is contained within the boundaries of the cysteine peptidase domain that defines the MEROPS peptidase family C40 (clan C-). A type example being dipeptidyl-peptidase VI from Bacillus sphaericus and gamma-glutamyl-diamino acid-endopeptidase precursor from Lactococcus lactis 3.4.19.11 from EC. This group also contains proteins classified as non-peptidase homologues in that they either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases in the C40 family. ; PDB: 3PVQ_B 3GT2_A 3NPF_B 2K1G_A 3I86_A 3S0Q_A 2XIV_A 3PBC_A 3NE0_A 3M1U_B ....
Probab=27.53 E-value=36 Score=27.02 Aligned_cols=31 Identities=26% Similarity=0.554 Sum_probs=21.4
Q ss_pred EEEcCCCeeeeCC--CceeeeecCCCcceeeee
Q psy13797 169 VTLEPGDLLYLPR--GYIHQASTVTNEHSLHVT 199 (339)
Q Consensus 169 ~~L~pGDvLYiPr--G~~H~a~s~~~~~SlhlT 199 (339)
..++|||+||+.. ...|-+..+++..=+|-+
T Consensus 50 ~~~~pGDlif~~~~~~~~Hvgiy~g~~~~iha~ 82 (105)
T PF00877_consen 50 SELQPGDLIFFKGGGGISHVGIYLGDGKFIHAS 82 (105)
T ss_dssp GG-TTTEEEEEEGTGGEEEEEEEEETTEEEEEE
T ss_pred hcCCcccEEEEeCCccCCEeEEEEeCCeEEEeC
Confidence 4578999999988 566777777655455543
No 110
>PLN00052 prolyl 4-hydroxylase; Provisional
Probab=27.16 E-value=6e+02 Score=24.88 Aligned_cols=148 Identities=13% Similarity=0.165 Sum_probs=67.2
Q ss_pred ccCCCCCHHHHHHHHhhCCcccccccceEEeeCCcccccCCCccCChhhhhhhhccccceeecCCcCCCchHHHHHHHHH
Q psy13797 17 YYNNLITSKKIDDILRDNVIEFKKNIDITLYEDGQRQTMDVEGRALPQIVWDHYREGCSIRFLNPQTYIKPLQQLNASLQ 96 (339)
Q Consensus 17 ~~~~l~s~~dl~~lL~~~~l~~~~~i~v~~y~~g~~~~~~~~g~~~~~~~~~~~~~G~tl~l~~~~~~~~~l~~~~~~Le 96 (339)
.|.+.||.+|.+.|+.-..-+.... -+.....|+.. .+-++...+..+... -.|-+.++...++
T Consensus 58 ~~~nfLs~~Ecd~Li~la~~~l~~S-~v~~~~~g~~~-------------~s~~RTS~~~~l~~~--~dpvv~~I~~Ria 121 (310)
T PLN00052 58 VYKGFLSDAECDHLVKLAKKKIQRS-MVADNKSGKSV-------------MSEVRTSSGMFLDKR--QDPVVSRIEERIA 121 (310)
T ss_pred EECCcCCHHHHHHHHHhcccccccc-eeecCCCCccc-------------cCCCEEecceeecCC--CCHHHHHHHHHHH
Confidence 4678899999999986643322111 01100111100 011122222333322 2466677777777
Q ss_pred HHhcCccc----ceEEeCCCCCCCCCCcccCCCcEEEEEEeEEE---EEEeCCCCCC---CCCCCCCC-CCCCC----Cc
Q psy13797 97 ELFGCFVG----ANTYQTPPTAQGFAPHYDDIEAFILQLEGKKK---WKVYLPRMVD---EYLPRYSS-PNFSQ----EE 161 (339)
Q Consensus 97 ~~~g~~v~----~n~Y~tp~gs~gf~~H~D~~dvfvlQl~G~K~---W~l~~p~~~~---~~lp~~~~-~~~~~----~~ 161 (339)
...|.++. ..++--..|. -|.+|||..+.-.-+..|.+| +.+|-.+... ...|.... ..-+. .+
T Consensus 122 ~~t~lp~~~~E~lQVlrY~~Gq-~Y~~H~D~~~~~~~~~~gg~R~aTvL~YLndv~~GGeT~FP~~~~~~~~~~~~~~s~ 200 (310)
T PLN00052 122 AWTFLPEENAENIQILRYEHGQ-KYEPHFDYFHDKINQALGGHRYATVLMYLSTVDKGGETVFPNAEGWENQPKDDTFSE 200 (310)
T ss_pred HHhCCCcccCcceEEEecCCCC-CCCCCCCccccccccccCCceeEEEEEEeccCCCCCceecCCcccccccccccchhh
Confidence 77665542 2233333443 488999965422223233333 3344332211 11222100 00000 00
Q ss_pred CCCCcEEEEEcCCCeeeeCC
Q psy13797 162 IGTPILTVTLEPGDLLYLPR 181 (339)
Q Consensus 162 ~~~~~~e~~L~pGDvLYiPr 181 (339)
-......+.=+.|++|+++-
T Consensus 201 c~~~gl~VkPkkG~ALlF~n 220 (310)
T PLN00052 201 CAHKGLAVKPVKGDAVLFFS 220 (310)
T ss_pred hhcCCeEeccCcceEEEEec
Confidence 01224667778999999876
No 111
>COG0791 Spr Cell wall-associated hydrolases (invasion-associated proteins) [Cell envelope biogenesis, outer membrane]
Probab=27.09 E-value=73 Score=28.34 Aligned_cols=33 Identities=24% Similarity=0.429 Sum_probs=23.6
Q ss_pred CcEEEEEcCCCeeeeCC----CceeeeecCCCcceee
Q psy13797 165 PILTVTLEPGDLLYLPR----GYIHQASTVTNEHSLH 197 (339)
Q Consensus 165 ~~~e~~L~pGDvLYiPr----G~~H~a~s~~~~~Slh 197 (339)
+...-.++|||++|+.. +.-|-+..+.+...+|
T Consensus 133 ~v~~~~~~~GDlvff~~~~~~~~~Hvgiy~g~g~~ih 169 (197)
T COG0791 133 AVDDSDLQPGDLVFFNTGGGSSANHVGIYLGNGQFIH 169 (197)
T ss_pred ccChhhCCCCCEEEEecCCCCCCCeEEEEecCCeEEe
Confidence 33344499999999985 3558888887655555
No 112
>KOG3646|consensus
Probab=26.36 E-value=50 Score=34.15 Aligned_cols=78 Identities=15% Similarity=0.318 Sum_probs=45.3
Q ss_pred ccceEEeCCCCCCCCCCcccCC---CcEEEEEEeEEEEEEeCCCCCCCCCCCCCCCCCCCCcCCCCcEEEEEcCCCeeee
Q psy13797 103 VGANTYQTPPTAQGFAPHYDDI---EAFILQLEGKKKWKVYLPRMVDEYLPRYSSPNFSQEEIGTPILTVTLEPGDLLYL 179 (339)
Q Consensus 103 v~~n~Y~tp~gs~gf~~H~D~~---dvfvlQl~G~K~W~l~~p~~~~~~lp~~~~~~~~~~~~~~~~~e~~L~pGDvLYi 179 (339)
+..|+|+.-.-. -...-||.. .+-=+++-|.|.| .|+ ..+.+..+.+|+. .-+..-++-.-|+++|+
T Consensus 73 l~~naWl~y~W~-D~~LrW~pseygnI~dvR~p~~~iW---kPD---VLLYNSade~FDs---Ty~tN~Vv~~tG~v~~v 142 (486)
T KOG3646|consen 73 LSVNAWLQYQWN-DYKLRWDPSEYGNITDIRFPGGNIW---KPD---VLLYNSADEQFDS---TYKTNYVVYSTGSVLWV 142 (486)
T ss_pred hhhhhhhheeeh-hhhhccCHHHhCCceeeccCCcccc---CCc---eeccccccccCCC---cceeeEEEccCCeeeec
Confidence 445666644332 134455533 3456777777444 552 3444433444432 23566799999999999
Q ss_pred CCCceeeeecC
Q psy13797 180 PRGYIHQASTV 190 (339)
Q Consensus 180 PrG~~H~a~s~ 190 (339)
|+|..-..-..
T Consensus 143 PPGIfk~sCki 153 (486)
T KOG3646|consen 143 PPGIFKSSCKI 153 (486)
T ss_pred CCceeeeeeEE
Confidence 99986655443
No 113
>TIGR02408 ectoine_ThpD ectoine hydroxylase. Both ectoine and hydroxyectoine are compatible solvents that serve as protectants against osmotic and thermal stresses. A number of genomes synthesize ectoine. This enzyme allows conversion of ectoine to hydroxyectoine, which may be more effective for some purposes, and is found in a subset of ectoine-producing organisms.
Probab=25.60 E-value=66 Score=30.54 Aligned_cols=35 Identities=11% Similarity=0.217 Sum_probs=27.7
Q ss_pred EEEEEcCCCeeeeCCCceeeeecCC---Ccceeeeeec
Q psy13797 167 LTVTLEPGDLLYLPRGYIHQASTVT---NEHSLHVTIS 201 (339)
Q Consensus 167 ~e~~L~pGDvLYiPrG~~H~a~s~~---~~~SlhlT~~ 201 (339)
..+.++|||+|++-.-.||.+.... .-.++++++.
T Consensus 211 v~~~~~aGDvl~f~~~~~H~S~~N~s~~~R~~l~l~y~ 248 (277)
T TIGR02408 211 STFTGKAGSAVWFDCNTMHGSGSNITPWPRSNVFMVFN 248 (277)
T ss_pred eeeccCCceEEEEccccccCCCCCCCCCcceeEEEEEe
Confidence 3577899999999999999997753 2347777775
No 114
>COG3822 ABC-type sugar transport system, auxiliary component [General function prediction only]
Probab=25.43 E-value=2e+02 Score=26.60 Aligned_cols=28 Identities=25% Similarity=0.379 Sum_probs=24.6
Q ss_pred CcEEEEEcCCCeeeeCCCceeeeecCCC
Q psy13797 165 PILTVTLEPGDLLYLPRGYIHQASTVTN 192 (339)
Q Consensus 165 ~~~e~~L~pGDvLYiPrG~~H~a~s~~~ 192 (339)
......|+||.-+-+|+|.||.--+.++
T Consensus 151 ag~~lkL~PGesitL~Pg~~HsFwae~g 178 (225)
T COG3822 151 AGSQLKLSPGESITLPPGLYHSFWAEEG 178 (225)
T ss_pred cceeEEECCCCcEecCCCceeeeeecCC
Confidence 4568999999999999999999998753
No 115
>PRK00924 5-keto-4-deoxyuronate isomerase; Provisional
Probab=25.07 E-value=1.4e+02 Score=28.94 Aligned_cols=48 Identities=23% Similarity=0.186 Sum_probs=31.8
Q ss_pred CCCCcccCCCcEEEEEEeEEEEEEeCCCCCCCCCCCCCCCCCCCCcCCCCcEEEEEcCCCeeeeCCCceeeee
Q psy13797 116 GFAPHYDDIEAFILQLEGKKKWKVYLPRMVDEYLPRYSSPNFSQEEIGTPILTVTLEPGDLLYLPRGYIHQAS 188 (339)
Q Consensus 116 gf~~H~D~~dvfvlQl~G~K~W~l~~p~~~~~~lp~~~~~~~~~~~~~~~~~e~~L~pGDvLYiPrG~~H~a~ 188 (339)
|....-+..++-||-|.|+-..++-. .++.|.+.|.||||+|.--...
T Consensus 66 ~~~~fl~rrE~giV~lgG~~~V~vdG-------------------------~~~~l~~~d~LYVp~G~~~v~~ 113 (276)
T PRK00924 66 GVSYFLERRELGIINIGGAGTVTVDG-------------------------ETYELGHRDALYVGKGAKEVVF 113 (276)
T ss_pred cceeecCCcEEEEEEccceEEEEECC-------------------------EEEecCCCcEEEECCCCcEEEE
Confidence 33345566677777777776666421 2466779999999999554333
No 116
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=23.53 E-value=2.9e+02 Score=27.44 Aligned_cols=23 Identities=13% Similarity=0.196 Sum_probs=18.9
Q ss_pred EEEEcCCCeeeeCCCceeeeecC
Q psy13797 168 TVTLEPGDLLYLPRGYIHQASTV 190 (339)
Q Consensus 168 e~~L~pGDvLYiPrG~~H~a~s~ 190 (339)
.+..++||++.+|.-.+|.-.+.
T Consensus 289 ~~~W~~gD~f~vPsW~~~~h~a~ 311 (335)
T TIGR02272 289 VFRFSPKDVFVVPSWHPVRFEAS 311 (335)
T ss_pred EEEecCCCEEEECCCCcEecccC
Confidence 68999999999999877765554
No 117
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=22.40 E-value=61 Score=24.08 Aligned_cols=16 Identities=44% Similarity=0.484 Sum_probs=14.6
Q ss_pred EEEEcCCCeeeeCCCc
Q psy13797 168 TVTLEPGDLLYLPRGY 183 (339)
Q Consensus 168 e~~L~pGDvLYiPrG~ 183 (339)
|..|+|||.|-+|+|-
T Consensus 37 D~~L~~G~~l~l~~g~ 52 (63)
T PF11142_consen 37 DYWLQAGDSLRLRRGG 52 (63)
T ss_pred CEEECCCCEEEeCCCC
Confidence 7999999999999984
No 118
>PRK15078 polysaccharide export protein Wza; Provisional
Probab=21.10 E-value=53 Score=33.00 Aligned_cols=25 Identities=32% Similarity=0.468 Sum_probs=17.9
Q ss_pred cEEEEEcCCCeeeeCCCceeeeecC
Q psy13797 166 ILTVTLEPGDLLYLPRGYIHQASTV 190 (339)
Q Consensus 166 ~~e~~L~pGDvLYiPrG~~H~a~s~ 190 (339)
..+..|+|||++|||+---..+...
T Consensus 236 ~~ni~L~~GDvI~Vp~~~~~~v~V~ 260 (379)
T PRK15078 236 SQNRLLYPGDILYVPRNDDLKVFVM 260 (379)
T ss_pred ccCceeCCCCEEEECCCCCcEEEEe
Confidence 3468899999999999544444443
Done!