RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13797
(339 letters)
>gnl|CDD|219693 pfam08007, Cupin_4, Cupin superfamily protein. This family
contains many hypothetical proteins that belong to the
cupin superfamily.
Length = 319
Score = 181 bits (461), Expect = 9e-55
Identities = 84/326 (25%), Positives = 136/326 (41%), Gaps = 26/326 (7%)
Query: 1 DHWEKEPLYISRKQKNYYNNLITSKKIDDILRDNVIEF---KKNIDITLYEDGQRQTMDV 57
++W+K+PL I R+ + + + + ++ +E K + D + + +
Sbjct: 7 EYWQKKPLLI-RRALPDFAGPFSPDDLAGLAQEEDVESRLIKGDRDKNQWRVSRGPFAER 65
Query: 58 EGRALPQIVWDHYREGCS------IRFLNPQTYIKPLQQLNASLQELFGCFVGANTYQTP 111
+ R LP W +G + L P ++ P +++ + N Y TP
Sbjct: 66 DFRKLPAADWTLLVQGVDLWLPEVAQLLQPFRFL-PDWRIDDIMISFSLVGS--NVYATP 122
Query: 112 PTAQGFAPHYDDIEAFILQLEGKKKWKVYLPRMVDEYLPRYSSPNFSQEEIGTPILTVTL 171
+QG PHYDD + F+LQLEG+K+W+V L YS P + P+ L
Sbjct: 123 GGSQGVGPHYDDYDVFLLQLEGRKRWRVG--APCVPDLEFYSDPPLRILDDFEPVHDFVL 180
Query: 172 EPGDLLYLPRGYIHQASTVTNEHSLHVTISVYQKTAWIDLLEKAMPKALQAAGATDLEFR 231
EPGD+LYLPRG+IHQ V + SLH ++ T +LL + L D +R
Sbjct: 181 EPGDMLYLPRGFIHQG--VALDDSLHYSVGFRAPT-AAELLSSFLDYLLDKLPGIDERYR 237
Query: 232 RGLPIGYLRYAGLARGK-PVDIQADRLAMKENLKDLLAKLVEYVDLDDGVDEMGKQLMHD 290
L A A G+ D A L A L+E+ K +
Sbjct: 238 DPLL-----RAVQAPGEIDSDEIDRLAAQLSELLRDPALLLEFFGQFLTSPRREK-DIAP 291
Query: 291 ALPPVLSPEELQCSVFENGLRMSQTG 316
+LPP +EL+ + E+G + +
Sbjct: 292 SLPPF-REDELRDFLAEDGALLVRLS 316
>gnl|CDD|225406 COG2850, COG2850, Uncharacterized conserved protein [Function
unknown].
Length = 383
Score = 59.7 bits (145), Expect = 6e-10
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Query: 112 PTAQGFAPHYDDIEAFILQLEGKKKWKVYLPRMVDEYLPRYSSPNFSQEEIGTPILTVTL 171
G PH+D + F++Q +G+++W+V P+ P + L
Sbjct: 127 APGGGVGPHFDQYDVFLIQGQGRRRWRVGKK---CNMSTLCPHPDLLILAPFEPDIDEVL 183
Query: 172 EPGDLLYLPRGYIH 185
EPGD+LY+P G+ H
Sbjct: 184 EPGDILYIPPGFPH 197
>gnl|CDD|222269 pfam13621, Cupin_8, Cupin-like domain. This cupin like domain
shares similarity to the JmjC domain.
Length = 247
Score = 48.1 bits (115), Expect = 2e-06
Identities = 23/99 (23%), Positives = 39/99 (39%), Gaps = 19/99 (19%)
Query: 120 HYDDIEAFILQLEGKKKWKVY----LPRMVDEYLPRYSSPNFSQ---EEI---------G 163
HYD E + G+K++ ++ +P + L R FS +
Sbjct: 144 HYDAYENLYCVVSGRKRFTLFPPSQVPNLYPGPLDRTGGQPFSLVDPDNPDLEKFPRFKD 203
Query: 164 TPILTVTLEPGDLLYLPRGYIHQASTVTNEHSLHVTISV 202
L LEPGD LY+P G+ H V + ++ ++
Sbjct: 204 AKALVAELEPGDALYIPAGWWHH---VRSLDDFNIAVNY 239
>gnl|CDD|234838 PRK00784, PRK00784, cobyric acid synthase; Provisional.
Length = 488
Score = 34.3 bits (80), Expect = 0.092
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Query: 229 EFRRGLPIGYLRYAGLARGKPVDIQADRLAMKENLKDLLAKLVE-YVDLD 277
FRR L L + G +G D A++E D LA LVE ++DLD
Sbjct: 437 AFRRAL----LNWLGARKGLAPASALDYAALREAQLDRLADLVEEHLDLD 482
>gnl|CDD|236773 PRK10838, spr, outer membrane lipoprotein; Provisional.
Length = 190
Score = 30.5 bits (69), Expect = 0.96
Identities = 18/68 (26%), Positives = 26/68 (38%), Gaps = 11/68 (16%)
Query: 149 LPRYSSPNFSQEEIGTPILTVTLEPGDLLYLPRGYI--HQASTVTNEHSLH------VTI 200
LPR + Q+E+G + L GDL+ G H + N +H V I
Sbjct: 110 LPRSTY---EQQEMGKSVSRSKLRTGDLVLFRAGSTGRHVGIYIGNNQFVHASTSSGVII 166
Query: 201 SVYQKTAW 208
S + W
Sbjct: 167 SSMNEPYW 174
>gnl|CDD|236306 PRK08583, PRK08583, RNA polymerase sigma factor SigB; Validated.
Length = 257
Score = 29.7 bits (67), Expect = 1.7
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 8/53 (15%)
Query: 277 DDGVDEMGKQLMHDALPPVLSPEE---LQCSVFENGLRMSQ--TGEVYNATQI 324
+DG + ++++ + + PVLS E +QC+ EN +SQ TGE +Q+
Sbjct: 187 EDGYELTEQRMILEKILPVLSDREKSIIQCTFIEN---LSQKETGERLGISQM 236
>gnl|CDD|236547 PRK09521, PRK09521, exosome complex RNA-binding protein Csl4;
Provisional.
Length = 189
Score = 29.6 bits (67), Expect = 1.8
Identities = 11/38 (28%), Positives = 21/38 (55%)
Query: 8 LYISRKQKNYYNNLITSKKIDDILRDNVIEFKKNIDIT 45
++IS+ Y +L + KI DI+R VI + + ++
Sbjct: 102 IHISQVSDGYVESLTDAFKIGDIVRAKVISYTDPLQLS 139
>gnl|CDD|223862 COG0791, Spr, Cell wall-associated hydrolases (invasion-associated
proteins) [Cell envelope biogenesis, outer membrane].
Length = 197
Score = 29.6 bits (66), Expect = 1.8
Identities = 15/65 (23%), Positives = 23/65 (35%), Gaps = 6/65 (9%)
Query: 149 LPRYSSPNFSQEEIGTPILTVTLEPGDLLYLP----RGYIHQASTVTNEHSLHVTISVYQ 204
LPR + Q +GT + L+PGDL++ H + N +H S
Sbjct: 119 LPRTT--RADQWNVGTAVDDSDLQPGDLVFFNTGGGSSANHVGIYLGNGQFIHAAGSGGG 176
Query: 205 KTAWI 209
Sbjct: 177 VHISP 181
>gnl|CDD|219618 pfam07883, Cupin_2, Cupin domain. This family represents the
conserved barrel domain of the 'cupin' superfamily
('cupa' is the Latin term for a small barrel).
Length = 70
Score = 27.6 bits (62), Expect = 1.9
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 168 TVTLEPGDLLYLPRGYIHQASTVTNE 193
V L+ GD +Y P G H+ +E
Sbjct: 37 EVVLKAGDSVYFPAGVPHRFRNTGDE 62
>gnl|CDD|236508 PRK09426, PRK09426, methylmalonyl-CoA mutase; Reviewed.
Length = 714
Score = 30.2 bits (69), Expect = 2.0
Identities = 24/56 (42%), Positives = 28/56 (50%), Gaps = 13/56 (23%)
Query: 214 KAMPK---------ALQAAGAT-DLEFRRGLPIG--YLRYAGLARGKPVDIQADRL 257
+ MPK +Q AGAT DLE L G Y+R AGLA G +D A RL
Sbjct: 220 QNMPKFNSISISGYHMQEAGATADLELAYTLADGREYVR-AGLAAGLDIDDFAPRL 274
>gnl|CDD|131987 TIGR02941, Sigma_B, RNA polymerase sigma-B factor. This sigma
factor is restricted to certain lineages of the order
Bacillales including Staphylococcus , Listeria and
Bacillus.
Length = 255
Score = 29.5 bits (66), Expect = 2.0
Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Query: 277 DDGVDEMGKQLMHDALPPVLSPEE---LQCSVFENGLRMSQTGEVYNATQI 324
+DG D+ ++++ + + P+LS E + C+ EN L +TGE +Q+
Sbjct: 187 EDGYDQTERRMVLEKILPILSEREKSIIHCTFEEN-LSQKETGERLGISQM 236
>gnl|CDD|176561 cd08624, PI-PLCc_beta2, Catalytic domain of metazoan
phosphoinositide-specific phospholipase C-beta2. This
subfamily corresponds to the catalytic domain present in
metazoan phosphoinositide-specific phospholipase C
(PI-PLC, EC 3.1.4.11)-beta isozyme 2. PI-PLC is a
signaling enzyme that hydrolyzes the membrane
phospholipids phosphatidylinositol-4,5-bisphosphate
(PIP2) to generate two important second messengers in
eukaryotic signal transduction cascades, Inositol
1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG).
InsP3 triggers inflow of calcium from intracellular
stores, while DAG, together with calcium, activates
protein kinase C, which goes on to phosphorylate other
molecules, leading to altered cellular activity. Calcium
is required for the catalysis. PLC-beta represents a
class of mammalian PI-PLC that has an N-terminal
pleckstrin homology (PH) domain, an array of EF hands, a
PLC catalytic core domain, a C2 domain, and a unique
C-terminal coiled-coil (CT) domain necessary for
homodimerization. The PLC catalytic core domain is a TIM
barrel with two highly conserved regions (X and Y) split
by a highly degenerate linker sequence. PI-PLC-beta2 is
expressed at highest levels in cells of hematopoietic
origin. It is activated by the heterotrimeric G protein
alpha q subunits through their C2 domain and long
C-terminal extension. It is also activated by the
beta-gamma subunits of heterotrimeric G proteins.
Length = 261
Score = 29.6 bits (66), Expect = 2.1
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 9/83 (10%)
Query: 11 SRKQKNYYNNLITSKKIDDILRDNVIEF---KKNIDITLYEDGQRQTMDVEGRALPQIVW 67
++K ++Y + T K D+L ++F K +Y G R MD +PQ+ W
Sbjct: 177 AQKNRSYVISSFTELKAYDLLSKASVQFVEYNKRQMSRIYPKGTR--MD-SSNYMPQMFW 233
Query: 68 DHYREGCSIRFLNPQTYIKPLQQ 90
+ GC + LN QT P+QQ
Sbjct: 234 N---VGCQMVALNFQTMDLPMQQ 253
>gnl|CDD|226586 COG4101, COG4101, Predicted mannose-6-phosphate isomerase
[Carbohydrate transport and metabolism].
Length = 142
Score = 28.7 bits (64), Expect = 2.5
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 168 TVTLEPGDLLYLPRGYIHQASTVTNE 193
+ PGD Y+P G HQ + ++ E
Sbjct: 89 HAEVGPGDFFYIPPGVPHQPANLSTE 114
>gnl|CDD|224829 COG1917, COG1917, Uncharacterized conserved protein, contains
double-stranded beta-helix domain [Function unknown].
Length = 131
Score = 28.3 bits (63), Expect = 2.7
Identities = 16/76 (21%), Positives = 31/76 (40%), Gaps = 8/76 (10%)
Query: 147 EYLPRYSSPNFSQEEI---GTPILTV-----TLEPGDLLYLPRGYIHQASTVTNEHSLHV 198
+P ++ P Q G + + L+ GD++ +P G +H V +E + +
Sbjct: 54 AVIPWHTHPLGEQTIYVLEGEGTVQLEGEKKELKAGDVIIIPPGVVHGLKAVEDEPMVLL 113
Query: 199 TISVYQKTAWIDLLEK 214
+ +DLLE
Sbjct: 114 LVFPLVDGFRVDLLEP 129
>gnl|CDD|225051 COG2140, COG2140, Thermophilic glucose-6-phosphate isomerase and
related metalloenzymes [Carbohydrate transport and
metabolism / General function prediction only].
Length = 209
Score = 28.9 bits (65), Expect = 3.1
Identities = 9/27 (33%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 159 QEEIGTPILTVTLEPGDLLYLPRGYIH 185
Q+ G + + GD++Y+P GY H
Sbjct: 119 QKPEGEAR-VIAVRAGDVIYVPPGYGH 144
>gnl|CDD|221843 pfam12903, DUF3830, Protein of unknown function (DUF3830). This is
a family of bacterial and archaeal proteins, the
structure for one of whose members has been
characterized. PDB:3kop probably adopts a new hexameric
form compared to previous structures. The putative
active is near the domain interface. 3kop is most
closely related, structurally to PDB:1zx8, where the
potential active site is located near residues E51 and
Y53 (conserved in 1zx8). Beyond the two residues above,
the other residues are not conserved. Also the shape of
the active site differs from that of 1zx8. PDB:1zx8
belongs to family DUF369. pfam04126, which is part of
the cyclophilin-like clan.
Length = 147
Score = 28.5 bits (64), Expect = 3.1
Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 8/49 (16%)
Query: 137 WKVYLPRMVDEYLPRYSS-------PNFSQEEIGTPILTVTLEPGDLLY 178
W LP +Y+ P+F+ +E TVT PGDLL
Sbjct: 27 WD-ALPLSGQVIHAKYAGNEIYTLLPSFAAQEPPAENPTVTPIPGDLLL 74
>gnl|CDD|233409 TIGR01429, AMP_deaminase, AMP deaminase. This model describes AMP
deaminase, a large, well-conserved eukaryotic protein
involved in energy metabolism. Most members of the
family have an additional, poorly alignable region of
150 amino acids or more N-terminal to the region
included in the model.
Length = 611
Score = 29.0 bits (65), Expect = 4.0
Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
Query: 121 YDDIEAFILQLE---GKKKWKVYLPRMVDEYLPRYSSPNFSQ--EEIGTPILTVTLEPGD 175
+D + +I+ + +W + +PR+ D Y + PNF E + P+ VT +P
Sbjct: 308 WDSLARWIIDHDVFSPNVRWLIQVPRLYDVYRSKKLVPNFGDMLENVFLPLFEVTKDPSS 367
>gnl|CDD|179366 PRK02102, PRK02102, ornithine carbamoyltransferase; Validated.
Length = 331
Score = 28.7 bits (65), Expect = 4.0
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 249 PVDIQADRLAMKENLKDLLAKLVEYVDLDDGVDEMGKQLM 288
P + AD + MKE+ L K ++ + DG + M LM
Sbjct: 136 PTQMLADFMTMKEHFGPL--KGLKLAYVGDGRNNMANSLM 173
>gnl|CDD|235043 PRK02492, PRK02492, deoxyhypusine synthase-like protein;
Provisional.
Length = 347
Score = 28.9 bits (65), Expect = 4.4
Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 4/47 (8%)
Query: 199 TISVYQKTAWIDLLEKAMPKALQAAGAT--DLEFRRGLPIGYLRYAG 243
S +IDL+ M A+ A GA D +F L G+ Y G
Sbjct: 69 LSSAGCMQVYIDLVRNNMVDAIVATGANIVDQDFFEAL--GFKHYQG 113
>gnl|CDD|220983 pfam11107, FANCF, Fanconi anemia group F protein (FANCF). FANCF
regulates its own expression by methylation at both mRNA
and protein levels. Methylation-induced inactivation of
FANCF has an important role on the occurrence of ovarian
cancers by disrupting the FA-BRCA pathway.
Length = 343
Score = 28.6 bits (64), Expect = 4.7
Identities = 13/72 (18%), Positives = 20/72 (27%), Gaps = 4/72 (5%)
Query: 104 GANTYQTPPTAQGFAPHYDDIEAFILQLEGKKKWKVYLPRMVDEYLPRYSSPNFSQEEIG 163
G N Y G YD E + LE + R ++
Sbjct: 259 GRNLYFNALKVWGQWMIYDVFEGLWVGLEAAGSFDELCERFRS----LTQGSPPLKDATL 314
Query: 164 TPILTVTLEPGD 175
T + + + GD
Sbjct: 315 TALEDLKRQDGD 326
>gnl|CDD|225796 COG3257, GlxB, Uncharacterized protein, possibly involved in
glyoxylate utilization [General function prediction
only].
Length = 264
Score = 28.2 bits (63), Expect = 5.5
Identities = 10/38 (26%), Positives = 12/38 (31%), Gaps = 3/38 (7%)
Query: 168 TVTLEPGDLLYLPRGYIHQASTVTNEHSLHVTISVYQK 205
T L G YLP G T+ N +K
Sbjct: 102 THALREGGYAYLPPGSGW---TLRNAQKEDSRFHWIRK 136
>gnl|CDD|202224 pfam02373, JmjC, JmjC domain, hydroxylase. The JmjC domain belongs
to the Cupin superfamily. JmjC-domain proteins may be
protein hydroxylases that catalyze a novel histone
modification. This is confirmed to be a hydroxylase: the
human JmjC protein named Tyw5p unexpectedly acts in the
biosynthesis of a hypermodified nucleoside,
hydroxy-wybutosine, in tRNA-Phe by catalyzing
hydroxylation.
Length = 114
Score = 27.3 bits (61), Expect = 6.3
Identities = 12/54 (22%), Positives = 20/54 (37%), Gaps = 2/54 (3%)
Query: 134 KKKWKVYLPRMVDEYLPRYSSPNFSQEEIGTPILTVTLEPGDLLYLPRGYIHQA 187
K P ++ S P E G P+ +PG+ ++ G+ HQ
Sbjct: 50 SKHNGGEQPDLLLHLNTIIS-PKQLLEN-GIPVYRFVQKPGEFVFTFPGWYHQV 101
>gnl|CDD|183011 PRK11171, PRK11171, hypothetical protein; Provisional.
Length = 266
Score = 27.9 bits (63), Expect = 7.1
Identities = 10/38 (26%), Positives = 13/38 (34%), Gaps = 3/38 (7%)
Query: 168 TVTLEPGDLLYLPRGYIHQASTVTNEHSLHVTISVYQK 205
T L G YLP G T+ N + +K
Sbjct: 102 THALSEGGYAYLPPGSDW---TLRNAGAEDARFHWIRK 136
>gnl|CDD|215296 PLN02540, PLN02540, methylenetetrahydrofolate reductase.
Length = 565
Score = 28.2 bits (63), Expect = 7.2
Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Query: 242 AGLARGKPVDIQADRLAMKENLKDLLAKLVEYVDLDDGVDEMGKQLMHD 290
AG P I D LA E + LA L E VD G D + QL +D
Sbjct: 134 AGYPEAHPDVIGGDGLATPEAYQKDLAYLKEKVDA--GADLIITQLFYD 180
>gnl|CDD|221832 pfam12887, SICA_alpha, SICA extracellular alpha domain. The SICA
(schizont-infected cell agglutination) proteins of P.
knowlesi, one of the variant antigen gene families, are
associated with parasitic virulence. These proteins are
comprised of multiple domains, with the extracellular
domains occurring at different frequencies. This domain
is typically found at the N-terminus, with 1 or 2 copies
per protein. The domain is cysteine-rich domain and
similar to pfam12878.
Length = 183
Score = 27.2 bits (61), Expect = 8.5
Identities = 8/44 (18%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Query: 242 AGLARGKPVDIQADRLAMKENLKDLLAKLVEYVDLDDGVDEMGK 285
G +I + +K++L+++ +L Y+D +E+
Sbjct: 16 GGKTGTGAQEITEE---LKKDLEEMWEELKSYLDDAQESNEIAG 56
>gnl|CDD|239651 cd03679, MM_CoA_mutase_alpha_like, Coenzyme
B12-dependent-methylmalonyl coenzyme A (CoA) mutase
(MCM) family, Alpha subunit-like subfamily; contains
proteins similar to the alpha subunit of
Propionbacterium shermanni MCM, as well as human and E.
coli MCM. Members of this subfamily contain an
N-terminal MCM domain and a C-terminal coenzyme B12
binding domain. MCM catalyzes the isomerization of
methylmalonyl-CoA to succinyl-CoA. The reaction proceeds
via radical intermediates beginning with a
substrate-induced homolytic cleavage of the Co-C bond of
coenzyme B12 to produce cob(II)alamin and the
deoxyadenosyl radical. MCM plays an important role in
the conversion of propionyl-CoA to succinyl-CoA during
the degradation of propionate for the Krebs cycle. In
higher animals, MCM is involved in the breakdown of
odd-chain fatty acids, several amino acids, and
cholesterol. Methylobacterium extorquens MCM
participates in the glyoxylate regeneration pathway. In
M. extorquens, MCM forms a complex with MeaB; MeaB may
protect MCM from irreversible inactivation. In some
bacteria, MCM is involved in the reverse metabolic
reaction, the rearrangement of succinyl-CoA to
methylmalonyl-CoA. Examples include P. shermanni MCM
during propionic acid fermentation, E.coli MCM in a
pathway for the conversion of succinate to propionate
and Streptomyces MCM in polyketide biosynthesis.
Sinorhizobium meliloti strain SU47 MCM plays a role in
the polyhydroxyalkanoate degradation pathway. P.
shermanni and Streptomyces cinnamonensis MCMs are
alpha/beta heterodimers. It has been shown for P.
shermanni MCM that only the alpha subunit binds coenzyme
B12 and substrates. Human MCM is a homodimer with two
active sites. Mouse and E.coli MCMs are also homodimers.
In humans, impaired activity of MCM results in
methylmalonic aciduria, a disorder of propionic acid
metabolism.
Length = 536
Score = 28.1 bits (63), Expect = 8.7
Identities = 23/56 (41%), Positives = 26/56 (46%), Gaps = 13/56 (23%)
Query: 214 KAMPK---------ALQAAGAT-DLEFRRGLPIG--YLRYAGLARGKPVDIQADRL 257
K MPK +Q AGAT DLE L G Y+R GL G +D A RL
Sbjct: 214 KNMPKFNSISISGYHMQEAGATADLELAYTLADGLEYIR-TGLKAGLDIDEFAPRL 268
>gnl|CDD|215780 pfam00190, Cupin_1, Cupin. This family represents the conserved
barrel domain of the 'cupin' superfamily ('cupa' is the
Latin term for a small barrel). This family contains 11S
and 7S plant seed storage proteins, and germins. Plant
seed storage proteins provide the major nitrogen source
for the developing plant.
Length = 139
Score = 26.9 bits (60), Expect = 9.8
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 170 TLEPGDLLYLPRGYIH 185
L GD+ +P G+ H
Sbjct: 83 KLREGDVFVVPAGFAH 98
>gnl|CDD|226495 COG4007, COG4007, Predicted dehydrogenase related to H2-forming
N5,N10-methylenetetrahydromethanopterin dehydrogenase
[General function prediction only].
Length = 340
Score = 27.5 bits (61), Expect = 9.9
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 254 ADRLAMKENLKDLLAKLVEYVDLDDGVDEMGKQLMHDALPP 294
A + + E +DL A L VDLD+ V G ++ H L
Sbjct: 270 ARNMHLLERQEDLDAALKIIVDLDEEVRIEGAEISHTDLVA 310
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.137 0.404
Gapped
Lambda K H
0.267 0.0723 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 17,992,590
Number of extensions: 1789995
Number of successful extensions: 1753
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1748
Number of HSP's successfully gapped: 43
Length of query: 339
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 241
Effective length of database: 6,590,910
Effective search space: 1588409310
Effective search space used: 1588409310
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.5 bits)