RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13797
(339 letters)
>4diq_A Lysine-specific demethylase NO66; structural genomics, structural
genomics consortium, SGC, HI demethylase,
oxidoreductase; HET: PD2; 2.40A {Homo sapiens}
Length = 489
Score = 289 bits (739), Expect = 1e-94
Identities = 147/339 (43%), Positives = 207/339 (61%), Gaps = 2/339 (0%)
Query: 1 DHWEKEPLYISRKQKNYYNNLITSKKIDDILRDNVIEFKKNIDITLYEDGQRQTMDVEGR 60
WE+E + + R+ YY L ++ +D +LR+ ++F +++D Y +G+R+T++ GR
Sbjct: 62 RLWEREAVLVRRQDHTYYQGLFSTADLDSMLRNEEVQFGQHLDAARYINGRRETLNPPGR 121
Query: 61 ALPQIVWDHYREGCSIRFLNPQTYIKPLQQLNASLQELFGCFVGANTYQTPPTAQGFAPH 120
ALP W Y+ GCS+R L PQ + + Q A LQE FG G+N Y TPP +QGFAPH
Sbjct: 122 ALPAAAWSLYQAGCSLRLLCPQAFSTTVWQFLAVLQEQFGSMAGSNVYLTPPNSQGFAPH 181
Query: 121 YDDIEAFILQLEGKKKWKVYLPRMVDEYLPRYSSPNFSQEEIGTPILTVTLEPGDLLYLP 180
YDDIEAF+LQLEG+K W+VY PR E L SSPNFSQ+++G P+L LEPGDLLY P
Sbjct: 182 YDDIEAFVLQLEGRKLWRVYRPRAPTEELALTSSPNFSQDDLGEPVLQTVLEPGDLLYFP 241
Query: 181 RGYIHQASTVTNEHSLHVTISVYQKTAWIDLLEKAMPKALQAAGATDLEFRRGLPIGYLR 240
RG+IHQA HSLH+T+S YQ+ W D LE +P A+QAA ++EFRRGLP ++
Sbjct: 242 RGFIHQAECQDGVHSLHLTLSTYQRNTWGDFLEAILPLAVQAAMEENVEFRRGLPRDFMD 301
Query: 241 YAGLARGKPVDIQADRLAMKENLKDLLAKLVEYVDLDDGVDEMGKQLMHDALPPVLSPEE 300
Y G D R A E ++ L+A+L + +D D+ K +HD+LPPVL+ E
Sbjct: 302 YMGAQHSDSKD--PRRTAFMEKVRVLVARLGHFAPVDAVADQRAKDFIHDSLPPVLTDRE 359
Query: 301 LQCSVFENGLRMSQTGEVYNATQITKDTKVRLVRANAVR 339
SV+ +R V Q+T +T+V +++ R
Sbjct: 360 RALSVYGLPIRWEAGEPVNVGAQLTTETEVHMLQDGIAR 398
>2xdv_A MYC-induced nuclear antigen; ribosome biogenesis, nuclear protein;
HET: OGA; 2.57A {Homo sapiens}
Length = 442
Score = 216 bits (551), Expect = 4e-67
Identities = 99/346 (28%), Positives = 154/346 (44%), Gaps = 26/346 (7%)
Query: 1 DHWEKEPLYISRKQKN---YYNNLITSKKIDDILRDNVIEFKKNIDITLYEDGQRQTMDV 57
+ WE++PL I R YY +L + + + + ++++ +G+++ ++
Sbjct: 34 EFWEQKPLLIQRDDPALATYYGSLFKLTDLKSLCSRGMYYGR-DVNVCRCVNGKKKVLNK 92
Query: 58 EGRAL-PQIVWDHYREGCSIRFLNPQTYIKPLQQLNASLQELFGCFVGANTYQTPPTAQG 116
+G+A Q+ D ++ +I+F PQ + L ++ L+ FG VG+N Y TP +QG
Sbjct: 93 DGKAHFLQLRKDFDQKRATIQFHQPQRFKDELWRIQEKLECYFGSLVGSNVYITPAGSQG 152
Query: 117 FAPHYDDIEAFILQLEGKKKWKVYLPRMVDEYLPRYSSPNFSQEEIGTPILTVTLEPGDL 176
PHYDD+E FILQLEG+K W++Y P L R S +E IG P+ L+PGDL
Sbjct: 153 LPPHYDDVEVFILQLEGEKHWRLYHP---TVPLAREYSVEA-EERIGRPVHEFMLKPGDL 208
Query: 177 LYLPRGYIHQASTVTN-EHSLHVTISVYQKTAWIDLLEKAMPKALQAAGATDLEFRRGLP 235
LY PRG IHQA T HS HVTIS YQ +W D L + + D+E R G+P
Sbjct: 209 LYFPRGTIHQADTPAGLAHSTHVTISTYQNNSWGDFLLDTISGLVFDTAKEDVELRTGIP 268
Query: 236 IGYLRYAGLARGKPVDIQADRLAMKENLKDLLAKLVEYVD--LDDGVDEMGKQLMHDALP 293
L L L L + ++ + +M K + LP
Sbjct: 269 RQLLLQVE-----------STTVATRRLSGFLRTLADRLEGTKELLSSDMKKDFIMHRLP 317
Query: 294 PVLSPEELQCSVFENGLRMSQTGEVYNATQITKDTKVRLVRANAVR 339
P + + + S G V Q + ++
Sbjct: 318 PYSAGDGAELST-PGGKLPRLDSVV--RLQFKDHIVLTVLPDQDQS 360
>1vrb_A Putative asparaginyl hydroxylase; 2636534, structural genomi center
for structural genomics, JCSG, protein structure INI
PSI, oxidoreductase; 2.60A {Bacillus subtilis} SCOP:
b.82.2.11
Length = 342
Score = 181 bits (460), Expect = 1e-54
Identities = 56/310 (18%), Positives = 110/310 (35%), Gaps = 37/310 (11%)
Query: 1 DHWEKEPLYISRKQKNYYNNLITSKKIDDILRDNVIEFKKNIDITLYEDGQRQTMDVEGR 60
++W +PL R + + ++ +K+ + I + + + + +
Sbjct: 36 EYWPVKPLVA-RGEVERFTSIPGFEKVRTLENVLAIYNNPVMVVGDAVIEESEGITDRFL 94
Query: 61 ALPQIVWDHYREGCSIRFLNPQTYIKPLQQLNASLQELFGCFVGAN---TYQTPPTAQGF 117
P + Y +G ++ F +I +++ L+ G + GF
Sbjct: 95 VSPAEALEWYEKGAALEFDFTDLFIPQVRRWIEKLKAELRLPAGTSSKAIVYAAKNGGGF 154
Query: 118 APHYDDIEAFILQLEGKKKWKVYLPRMVDEYLPR-------YSSPNFSQEEIGTPIL--- 167
H+D I Q++G+K WK+ V + Y + G P
Sbjct: 155 KAHFDAYTNLIFQIQGEKTWKLAKNENVSNPMQHYDLSEAPYYPDDLQSYWKGDPPKEDL 214
Query: 168 ----TVTLEPGDLLYLPRGYIHQASTVTNEHSLHVTISVYQKTAWIDLLEKAMPKALQAA 223
V L PG +LYLPRG H + +L++T + + AW+DL+ A+ K L +
Sbjct: 215 PDAEIVNLTPGTMLYLPRGLWHSTKSDQATLALNIT---FGQPAWLDLMLAALRKKLIS- 270
Query: 224 GATDLEFRRGLPIGYLRYAGLARGKPVDIQADRLAMKENLKDLLAKLVEYVDLDDGVDEM 283
D FR ++ + + L+ L+ L E + +++
Sbjct: 271 ---DNRFRELAV-----------NHQSLHESSKSELNGYLESLIQTLSENAETLT-PEQI 315
Query: 284 GKQLMHDALP 293
+ D P
Sbjct: 316 FQSQDSDFDP 325
>3uyj_A Lysine-specific demethylase 8; jellyroll-like all beta fold,
nuclear, oxidored; HET: AKG; 2.35A {Homo sapiens} PDB:
4aap_A*
Length = 248
Score = 61.7 bits (150), Expect = 3e-11
Identities = 24/98 (24%), Positives = 42/98 (42%), Gaps = 22/98 (22%)
Query: 120 HYDDIEAFILQLEGKKKWKVYLPRMVDEYL---PRYSSPNFSQEEIGTPILT-------- 168
H D + F++Q+ G+K ++Y P+ L + N SQ ++ P L
Sbjct: 153 HQDPQQNFLVQVMGRKYIRLYSPQES-GALYPHDTHLLHNTSQVDVENPDLEKFPKFAKA 211
Query: 169 ----VTLEPGDLLYLPRGYIHQASTVTNEHSLHVTISV 202
L PG++L++P Y H +L ++ SV
Sbjct: 212 PFLSCILSPGEILFIPVKYWHYV------RALDLSFSV 243
>3d8c_A Hypoxia-inducible factor 1 alpha inhibitor; FIH, HIF, DSBH,
oxygenase, transcription, inhibitor oxoglutarate,
asparaginyl hydroxylase; HET: AKG; 2.10A {Homo sapiens}
PDB: 2ilm_A* 2w0x_A* 1h2l_A* 1h2m_A* 1h2n_A* 1yci_A*
2cgn_A 2cgo_A* 1h2k_A* 2wa3_A* 2wa4_A* 3od4_A* 3p3n_A*
3p3p_A* 2yc0_A* 2y0i_A* 2yde_A* 1mze_A* 1mzf_A* 2xum_A*
...
Length = 349
Score = 61.6 bits (149), Expect = 7e-11
Identities = 22/131 (16%), Positives = 42/131 (32%), Gaps = 21/131 (16%)
Query: 120 HYDDIEAFILQLEGKKKWKVYLPRMVDEYLPRYSSP---NFSQEEI------------GT 164
HY + + F Q++G K+ ++ P + P SQ +
Sbjct: 199 HYGEQQNFFAQIKGYKRCILFPPDQFECLYPYPVHHPCDRQSQVDFDNPDYERFPNFQNV 258
Query: 165 PILTVTLEPGDLLYLPRGYIHQASTVTNEHSLHVTISVYQKTAWIDLLEKAMPKALQAAG 224
+ PGD+LY+P + H + + + +TI+V W
Sbjct: 259 VGYETVVGPGDVLYIPMYWWHH---IESLLNGGITITV---NFWYKGAPTPKRIEYPLKA 312
Query: 225 ATDLEFRRGLP 235
+ R +
Sbjct: 313 HQKVAIMRNIE 323
>3al5_A HTYW5, JMJC domain-containing protein C2ORF60; tRNA modification
enzyme, unknown function; 2.50A {Homo sapiens} PDB:
3al6_A*
Length = 338
Score = 59.6 bits (144), Expect = 3e-10
Identities = 21/97 (21%), Positives = 38/97 (39%), Gaps = 24/97 (24%)
Query: 120 HYDDIEAFILQLEGKKKWKVYLPRMVDEYLPRYSS--------------PNFSQEEIGTP 165
HYD ++ ++Q+ GKK+ ++ PR + + P FS+
Sbjct: 183 HYDVMDNLLIQVTGKKRVVLFSPRDAQYLYLKGTKSEVLNIDNPDLAKYPLFSK----AR 238
Query: 166 ILTVTLEPGDLLYLPRGYIHQASTVTNEHSLHVTISV 202
+LE GD+L++P + H S + V
Sbjct: 239 RYECSLEAGDVLFIPALWFHNV------ISEEFGVGV 269
>3k2o_A Bifunctional arginine demethylase and lysyl-hydro JMJD6; structural
genomics consortium, SGC, chromatin regulator,
developmental protein; 1.75A {Homo sapiens} PDB: 3ld8_A
3ldb_A*
Length = 336
Score = 51.6 bits (123), Expect = 1e-07
Identities = 17/105 (16%), Positives = 37/105 (35%), Gaps = 29/105 (27%)
Query: 120 HYD--DIEAFILQLEGKKKWKVYLPRMVDEYLPRYSSPNFSQEEI--------------- 162
H D A+ ++G K+W ++ P L + + ++
Sbjct: 188 HIDPLGTSAWNALVQGHKRWCLF-PTSTPRELIKVTRDEGGNQQDEAITWFNVIYPRTQL 246
Query: 163 -----GTPILTVTLEPGDLLYLPRGYIHQASTVTNEHSLHVTISV 202
L + +PG+ +++P G+ H +L TI++
Sbjct: 247 PTWPPEFKPLEILQKPGETVFVPGGWWHVV------LNLDTTIAI 285
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 47.5 bits (112), Expect = 4e-06
Identities = 42/313 (13%), Positives = 79/313 (25%), Gaps = 89/313 (28%)
Query: 2 HWEKEPLYISRKQKNYYNNLITSKKIDDILRD----NVIE-FK---------KNIDITLY 47
H + L K K Y N L+ +L + F + +T +
Sbjct: 228 HSIQAELRRLLKSKPYENCLL-------VLLNVQNAKAWNAFNLSCKILLTTRFKQVTDF 280
Query: 48 EDGQRQTMDVEGRALPQIVWDHYREGCSIRFLNPQTYIKPLQQLNASLQELFGCFVGANT 107
T I DH+ + + L ++
Sbjct: 281 LSAATTT---------HISLDHHSMT----LTPDEV------------KSLLLKYLDCRP 315
Query: 108 YQTPPTAQGFAP-HYDDIEAFILQLEGKKKWKVYLPRMVDEYLPRYSSPNFSQEEIGTPI 166
P P I I +G W + + + I
Sbjct: 316 QDLPREVLTTNPRRLSIIAESIR--DGLATW---------DNWKHVNCDKLTT------I 358
Query: 167 LTVT---LEPGDLLYLPRGYIHQASTVTNEHSLHVTISVYQKTAWIDLLEKAMPKALQAA 223
+ + LEP + R + S V + H+ + W D+++ + +
Sbjct: 359 IESSLNVLEPAEY----RKMFDRLS-VFPPSA-HIPTILLS-LIWFDVIKSDVMVVVNKL 411
Query: 224 GATDLEFRRGLPIGYLRYAGLARGKPVDIQADRLAMKENLKDLLAKLVEYVDLDDGVDEM 283
L ++ I + EN L +V++ ++ D
Sbjct: 412 HKYSLVEKQPKESTISIP---------SIYLELKVKLENEYALHRSIVDHYNIPKTFDS- 461
Query: 284 GKQLMHDALPPVL 296
D +PP L
Sbjct: 462 -----DDLIPPYL 469
Score = 40.2 bits (93), Expect = 8e-04
Identities = 56/366 (15%), Positives = 113/366 (30%), Gaps = 93/366 (25%)
Query: 16 NYYNNLITSKKIDDILR-DNVIEFKKNIDITLYEDGQRQTMDVEGRALPQ---IVWDHYR 71
+ ++++ ++ID I+ + + + TL + L + +
Sbjct: 40 DMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIK 99
Query: 72 EGCSIRFLNPQTYI---------------------KPLQQLNASLQEL-----------F 99
+ + YI +P +L +L EL
Sbjct: 100 TEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVL 159
Query: 100 GCFVG-----ANTYQTPPTAQGFAPHYDDIEAFILQLEGKKKWKVYLPRMVDEYLPRYSS 154
G G + + D + F L L + M+ + L
Sbjct: 160 GS--GKTWVALDVCLSYKVQCKM-----DFKIFWLNL-KNCNSPETVLEML-QKLLYQID 210
Query: 155 PNFSQEEIGTPILTVTLEPGDLLYLPRGYIHQASTVTNEHSLHVTISVYQKTAW--ID-- 210
PN++ + + + + + R + E+ L V ++V AW +
Sbjct: 211 PNWTSRSDHSSNIKLRIH--SIQAELRRLLKSKP---YENCLLVLLNVQNAKAWNAFNLS 265
Query: 211 ---LL---EKAMPKALQAAGATDL---EFRRGLPIGY-----LRYAGLARGKPVDI--QA 254
LL K + L AA T + L L+Y +P D+ +
Sbjct: 266 CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC---RPQDLPREV 322
Query: 255 DR-----LAM-KENLKDLLAKLVEYVDLDDGVDEMGKQLMHDALPPVLSPEELQ-----C 303
L++ E+++D LA + ++ D++ ++ +L VL P E +
Sbjct: 323 LTTNPRRLSIIAESIRDGLATWDNWKHVN--CDKL-TTIIESSL-NVLEPAEYRKMFDRL 378
Query: 304 SVFENG 309
SVF
Sbjct: 379 SVFPPS 384
Score = 37.1 bits (85), Expect = 0.008
Identities = 38/202 (18%), Positives = 63/202 (31%), Gaps = 35/202 (17%)
Query: 120 HYDDIEAFILQLEGKKKWKVYLPRMVDE----YLPRYSSPNFSQEEIGTPILTVTLEPGD 175
H+ D E Q + K V+ VD + S+EEI
Sbjct: 5 HHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEI-----------DH 53
Query: 176 LLYLPRGYIHQASTVTNEHSLHVTISVYQKTAWIDLLEKAMPKA---LQAAGATDLEFRR 232
++ V+ L T+ Q+ +E+ + L + T+
Sbjct: 54 IIMSK-------DAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPS 106
Query: 233 GLPIGYLRYAG-LARGKPV--DIQADRLAMKENLKDLLAKL--VEYVDLDDGVDEMGKQL 287
+ Y+ L V RL L+ L +L + V + DGV GK
Sbjct: 107 MMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI-DGVLGSGKTW 165
Query: 288 MHDALPPVLSPEELQCSVFENG 309
+ AL V ++QC +
Sbjct: 166 V--AL-DVCLSYKVQC-KMDFK 183
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 44.7 bits (105), Expect = 4e-05
Identities = 57/257 (22%), Positives = 92/257 (35%), Gaps = 71/257 (27%)
Query: 104 GANTYQTPPTAQGF---A-PHYDDIEAF-ILQL--EGKKKWKVYLP----RMVDEYLPRY 152
G + Y+T AQ A H+ D F IL + ++ + + E Y
Sbjct: 1632 GMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRE---NY 1688
Query: 153 SSPNFSQEEIGTPILTVTLEPGDLLYLPRGYIHQASTVTNEHS---LHVTISVYQKT--A 207
S+ F G + + +++ T L T Q T A
Sbjct: 1689 SAMIFETIVDGKLKTEKIFKEIN---------EHSTSYTFRSEKGLLSAT----QFTQPA 1735
Query: 208 WIDLLEKAMPKALQAAGATDLE--FRRGLPIGYLRYAGLARGKPVDIQADRLAMKENLKD 265
+ L+EKA + L++ G + F G +G YA LA AD + +++
Sbjct: 1736 -LTLMEKAAFEDLKSKGLIPADATF-AGHSLG--EYAALAS------LADVM----SIES 1781
Query: 266 LLAKLVEY----VDLDDGVDEMGKQL--MHDALPP-----VLSPEELQCSVFENGLRMSQ 314
L+ ++V Y + + DE+G+ M A+ P S E LQ V G +
Sbjct: 1782 LV-EVVFYRGMTMQVAVPRDELGRSNYGMI-AINPGRVAASFSQEALQYVVERVG---KR 1836
Query: 315 TGEV-----YNA--TQI 324
TG + YN Q
Sbjct: 1837 TGWLVEIVNYNVENQQY 1853
Score = 42.3 bits (99), Expect = 2e-04
Identities = 33/240 (13%), Positives = 62/240 (25%), Gaps = 98/240 (40%)
Query: 63 PQIVWDHYREGC-------SIRFLNPQTYIKPLQQLNASLQE-------LF-G--CFV-- 103
P I+ D SI L + + + N+ L L G V
Sbjct: 321 PSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVS 380
Query: 104 GANTYQTPPTA-QGFAPHYDDIEAFILQLEGKKKWKVYL----PRMVDEYLPRYSSPNFS 158
G PP + G +A G + ++ + + +LP
Sbjct: 381 G------PPQSLYGLNLTLRKAKA----PSGLDQSRIPFSERKLKFSNRFLP-------- 422
Query: 159 QEEIGTPILTVTLEPGDLLYLPRGYIHQASTVTNEHSLHVTISVYQKTAWIDLLEKAMPK 218
+ +P + HS LL A
Sbjct: 423 ---VASP------------F---------------HS--------------HLLVPASDL 438
Query: 219 ALQAAGATDLEFRR---GLPIGYLRYAGLARGKPVDIQADRLAMKENLKDLLAKLVEYVD 275
+ ++ F +P+ Y + G D++ ++ E + D + + V
Sbjct: 439 INKDLVKNNVSFNAKDIQIPV-YDTFDG------SDLRVLSGSISERIVDCI--IRLPVK 489
Score = 41.2 bits (96), Expect = 4e-04
Identities = 57/344 (16%), Positives = 109/344 (31%), Gaps = 99/344 (28%)
Query: 44 ITLYEDGQRQTMDVEGRALPQIVWDHY---REGCSIRFLNPQTYIKPLQQLNA-----SL 95
+TL + V P + +E +F + +P + A +
Sbjct: 9 LTLSHGSLEHVLLV-----PTASFFIASQLQE----QFN--KILPEPTEGFAADDEPTTP 57
Query: 96 QELFGCFVGANTYQTPPTAQG------------FAPHY---DDIEAFILQLEG------- 133
EL G F+G + P+ G F Y +DI A +L
Sbjct: 58 AELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLV 117
Query: 134 -KKKW-KVYLP-RMV--DEYLPRYSSPNFSQEEIG-TPILTV---------TLEPGDL-- 176
K+ K Y+ R++ + + +S F G ++ + E +L
Sbjct: 118 KTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFE--ELRD 175
Query: 177 LY-----LPRGYIHQASTVTNEHSLHV--TISVYQKT----AWIDLLEKAMPKA-LQAAG 224
LY L I ++ +E V+ + W++ K L +
Sbjct: 176 LYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIP 235
Query: 225 ATDLEFRRGLP-IGYL---RYAGLAR--GK-PVDIQADRLAMKENLKDLL-AKLVEYVDL 276
+ P IG + Y A+ G P ++++ + + L+ A + D
Sbjct: 236 IS-------CPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDS 288
Query: 277 DDGVDEMGKQLM----------HDALPPV-LSPEELQCSVFENG 309
+ ++ + ++A P L P L+ S+ EN
Sbjct: 289 WESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSL-ENN 331
Score = 33.9 bits (77), Expect = 0.089
Identities = 30/167 (17%), Positives = 50/167 (29%), Gaps = 51/167 (30%)
Query: 210 DLLEKAMPKALQAAGATDLEFRRGLPIGYLRYAGLARGKPVDIQADRLAMK-ENLKDLLA 268
D+ +A G + L+ P+ + G +GK I+ + AM E + D
Sbjct: 1644 DVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGK--RIRENYSAMIFETIVDGKL 1701
Query: 269 KLVEYVDLDDGVDEMGKQLMHDALPPVLSPEEL-------Q-------CSVFE----NGL 310
K + + ++E S + L Q + FE GL
Sbjct: 1702 KTEK---IFKEINEHSTSYTFR------SEKGLLSATQFTQPALTLMEKAAFEDLKSKGL 1752
Query: 311 RMSQT-------GEVYNA----TQI--TKDTKVRLVR------ANAV 338
+ GE Y A + + V +V AV
Sbjct: 1753 IPADATFAGHSLGE-YAALASLADVMSIESL-VEVVFYRGMTMQVAV 1797
>3kv9_A JMJC domain-containing histone demethylation protein 1D; jumonji
domain lysine demethylase, metal-binding, zinc,
zinc-finger; 2.29A {Homo sapiens} PDB: 3kva_A* 3kvb_A*
3u78_A*
Length = 397
Score = 43.3 bits (101), Expect = 8e-05
Identities = 16/87 (18%), Positives = 33/87 (37%), Gaps = 9/87 (10%)
Query: 120 HYD--DIEAFILQLEGKKKWKVYLPRMVDEYLPRYSSPNFSQEEI-----GTPILTVTLE 172
H D + L G+K + + P + S + +Q E+ ++
Sbjct: 191 HIDFGGTSVWYHVLWGEKIFYLIKPTDENLARYESWSSSVTQSEVFFGDKVDKCYKCVVK 250
Query: 173 PGDLLYLPRGYIHQASTVTNEHSLHVT 199
G L++P G+IH +T++ +
Sbjct: 251 QGHTLFVPTGWIHA--VLTSQDCMAFG 275
>3k3o_A PHF8, PHD finger protein 8; histone demethylase, chromatin
modification, methylated H3K9, mental retardation,
metal-BI phosphoprotein, zinc-finger; HET: AKG; 2.10A
{Homo sapiens} PDB: 3k3n_A* 4do0_A* 2wwu_A*
Length = 371
Score = 42.0 bits (98), Expect = 2e-04
Identities = 17/87 (19%), Positives = 33/87 (37%), Gaps = 9/87 (10%)
Query: 120 HYD--DIEAFILQLEGKKKWKVYLPRMVDEYLPRYSSPNFSQ-----EEIGTPILTVTLE 172
H D + L+G+K + + P + L S + +Q + +++
Sbjct: 163 HIDFGGTSVWYHVLKGEKIFYLIRPTNANLTLFECWSSSSNQNEMFFGDQVDKCYKCSVK 222
Query: 173 PGDLLYLPRGYIHQASTVTNEHSLHVT 199
G L++P G+IH +T L
Sbjct: 223 QGQTLFIPTGWIHA--VLTPVDCLAFG 247
>3pua_A GRC5, PHD finger protein 2; alpha-ketoglutarate-Fe2+ dependent
dioxygenases, histone TAI protein, protein binding; HET:
OGA; 1.89A {Homo sapiens} PDB: 3pu3_A* 3ptr_B* 3pu8_B*
3pus_A*
Length = 392
Score = 41.3 bits (96), Expect = 3e-04
Identities = 17/87 (19%), Positives = 32/87 (36%), Gaps = 9/87 (10%)
Query: 120 HYD--DIEAFILQLEGKKKWKVYLPRMVDEYLPRYSSPNFSQEEI-----GTPILTVTLE 172
H D A+ L+G+K + + P + L + E+ ++
Sbjct: 190 HIDSGGASAWYHVLKGEKTFYLIRPASANISLYERWRSASNHSEMFFADQVDKCYKCIVK 249
Query: 173 PGDLLYLPRGYIHQASTVTNEHSLHVT 199
G L++P G+I+ T+T L
Sbjct: 250 QGQTLFIPSGWIYA--TLTPVDCLAFA 274
>2xlg_A SLL1785 protein, CUCA; metal binding protein, cupin; 1.80A
{Synechocystis SP} PDB: 2xl7_A 2xl9_A 2xlf_A* 2xla_A
Length = 239
Score = 37.3 bits (85), Expect = 0.004
Identities = 24/130 (18%), Positives = 38/130 (29%), Gaps = 11/130 (8%)
Query: 109 QTPPTAQGFAP---HYDDIEAFILQLEGKKKWKVYLPRMVDEYLPRYSSPNFSQEEIGTP 165
Q PP G HY E F EG + + P
Sbjct: 49 QIPP--GGGPMPHIHYFINEWFWT-PEGGIELFH-----STKQYPNMDELPVVGGAGRGD 100
Query: 166 ILTVTLEPGDLLYLPRGYIHQASTVTNEHSLHVTISVYQKTAWIDLLEKAMPKALQAAGA 225
+ ++ EP L+Y P Y+H T++ V + + + A + A
Sbjct: 101 LYSIQSEPKQLIYSPNHYMHGFVNPTDKTLPIVFVWMRNEVAPDFPYHDGGMREYFQAVG 160
Query: 226 TDLEFRRGLP 235
+ LP
Sbjct: 161 PRITDLNNLP 170
>2yu1_A JMJC domain-containing histone demethylation PROT;
JMJC-domain-containing histone demethylases,
oxidoreductase; HET: AKG; 2.70A {Homo sapiens} PDB:
2yu2_A
Length = 451
Score = 37.2 bits (85), Expect = 0.007
Identities = 15/79 (18%), Positives = 27/79 (34%), Gaps = 7/79 (8%)
Query: 126 AFILQLEGKKKWKVYLPRMVDEYLPRYSSPNFSQEEIGTP-----ILTVTLEPGDLLYLP 180
+ +G K + + P + L + SQ +I + L+ G +P
Sbjct: 220 VWYHIHQGGKVFWLIPPTAHNLELYENWLLSGSQGDIFLGDRVSDCQRIELKQGYTFVIP 279
Query: 181 RGYIHQASTVTNEHSLHVT 199
G+IH T +L
Sbjct: 280 SGWIHA--VYTPTDTLVFG 296
>3pur_A Lysine-specific demethylase 7 homolog;
oxidoreductase-oxidoreductase inhibitor complex; HET:
2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A*
3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Length = 528
Score = 37.0 bits (84), Expect = 0.009
Identities = 14/79 (17%), Positives = 28/79 (35%), Gaps = 7/79 (8%)
Query: 126 AFILQLEGKKKWKVYLPRMVDEYLPRYSSPNFSQEEI-----GTPILTVTLEPGDLLYLP 180
+ L+G+K + + P + + + + V ++ G L +P
Sbjct: 320 VYYHILKGEKIFYIAAPTEQNFAAYQAHETSPDTTTWFGDIANGAVKRVVIKEGQTLLIP 379
Query: 181 RGYIHQASTVTNEHSLHVT 199
G+IH +T SL
Sbjct: 380 AGWIHA--VLTPVDSLVFG 396
>3kv5_D JMJC domain-containing histone demethylation protein 1D;
epigenetics, histone CODE, jumonji lysine demethylase,
metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo
sapiens} PDB: 3kv6_A*
Length = 488
Score = 36.5 bits (83), Expect = 0.011
Identities = 18/76 (23%), Positives = 32/76 (42%), Gaps = 11/76 (14%)
Query: 131 LEGKKKWKVYLPRMVDEYLPRYSSPNFSQ-------EEIGTPILTVTLEPGDLLYLPRGY 183
L G+K + + P DE L RY S + S + ++ G L++P G+
Sbjct: 295 LWGEKIFYLIKPT--DENLARYESWSSSVTQSEVFFGDKVDKCYKCVVKQGHTLFVPTGW 352
Query: 184 IHQASTVTNEHSLHVT 199
IH +T++ +
Sbjct: 353 IHA--VLTSQDCMAFG 366
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone
modifications, jumonji demethylase, mental retardation,
metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo
sapiens}
Length = 447
Score = 36.1 bits (82), Expect = 0.015
Identities = 16/74 (21%), Positives = 31/74 (41%), Gaps = 7/74 (9%)
Query: 131 LEGKKKWKVYLPRMVDEYLPRYSSPNFSQEEIGTPILT-----VTLEPGDLLYLPRGYIH 185
L+G+K + + P + L S + +Q E+ +++ G L++P G+IH
Sbjct: 260 LKGEKIFYLIRPTNANLTLFECWSSSSNQNEMFFGDQVDKCYKCSVKQGQTLFIPTGWIH 319
Query: 186 QASTVTNEHSLHVT 199
+T L
Sbjct: 320 A--VLTPVDCLAFG 331
>3gt2_A Putative uncharacterized protein; P60 domain, antigen, unknown
function; HET: EDO; 1.75A {Mycobacterium avium subsp}
Length = 142
Score = 32.0 bits (73), Expect = 0.11
Identities = 11/52 (21%), Positives = 16/52 (30%), Gaps = 14/52 (26%)
Query: 149 LPRYSSPNFSQEEIGTPILTVTLEPGDLLYLPRGYIHQASTVTNEHSLHVTI 200
LPR S + +G IL GDL++ V +
Sbjct: 71 LPRSSG---AMYRVGQKILPQQARKGDLIFYGPEGTQ-----------SVAM 108
>1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich,
oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus
japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A*
1gqg_A*
Length = 350
Score = 32.9 bits (74), Expect = 0.13
Identities = 14/78 (17%), Positives = 18/78 (23%), Gaps = 23/78 (29%)
Query: 111 PPTAQGFAPHY--DDIEAFILQLEGKKKWKVYLPRMVDEYLPRYSSPNFSQEEIGTPILT 168
A G PH E F +G + + T
Sbjct: 57 HSDALGVLPHIHQKHYENFYC-NKGSFQLWAQSGNETQQ--------------------T 95
Query: 169 VTLEPGDLLYLPRGYIHQ 186
L GD +PR H
Sbjct: 96 RVLSSGDYGSVPRNVTHT 113
Score = 31.3 bits (70), Expect = 0.37
Identities = 9/52 (17%), Positives = 17/52 (32%), Gaps = 5/52 (9%)
Query: 168 TVTLEPGDLLYLPRGYIHQASTVTNEHSLHVTISVYQKTAWID--LLEKAMP 217
L GD+ ++P G +E + V + +D L+
Sbjct: 292 ATELGSGDVAFIPGGVEF---KYYSEAYFSKVLFVSSGSDGLDQNLVNGGEE 340
>3pbi_A Invasion protein; peptidoglycan hydrolase, extracellular, invasion
related Pro cell WALL, NLPC-like module, hydrolase;
1.60A {Mycobacterium tuberculosis} PDB: 3i86_A
Length = 214
Score = 32.2 bits (73), Expect = 0.15
Identities = 12/52 (23%), Positives = 19/52 (36%), Gaps = 14/52 (26%)
Query: 149 LPRYSSPNFSQEEIGTPILTVTLEPGDLLYLPRGYIHQASTVTNEHSLHVTI 200
+PR+S Q G + + GDL++ G HVT+
Sbjct: 140 IPRFSG---DQYNAGRHVPPAEAKRGDLIFYGPGGGQ-----------HVTL 177
>2e9q_A 11S globulin subunit beta; cucubitin, pumpkin SEED storage
globulin, plant protein; 2.20A {Cucurbita maxima} PDB:
2evx_A
Length = 459
Score = 32.6 bits (73), Expect = 0.19
Identities = 20/137 (14%), Positives = 36/137 (26%), Gaps = 4/137 (2%)
Query: 117 FAPHYDDIEAFILQLEGKKKWKVYLPRMVDEY-LPRYSSPNFSQEEIGTPILTVTLEPGD 175
P + + I +G + +P + Y S + GD
Sbjct: 76 LLPGFSNAPKLIFVAQGFGIRGIAIPGCAETYQTDLRRSQSAGSAFKDQHQKIRPFREGD 135
Query: 176 LLYLPRGYIHQASTVTNEHSLHVTISVYQKTAWIDLLEKAMPKALQAAGATDLEFRRGLP 235
LL +P G H + + + T + + AG + R
Sbjct: 136 LLVVPAGVSHWMYNRGQSDLVLIVFAD---TRNVANQIDPYLRKFYLAGRPEQVERGVEE 192
Query: 236 IGYLRYAGLARGKPVDI 252
G + K +I
Sbjct: 193 WERSSRKGSSGEKSGNI 209
>3ne0_A Resuscitation promoting factor interacting protei; cell WALL,
peptidoglycan, hydrolase; 1.00A {Mycobacterium
tuberculosis} PDB: 3pbc_A 3s0q_A 2xiv_A*
Length = 214
Score = 31.9 bits (72), Expect = 0.21
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Query: 149 LPRYSSPNFSQEEIGTPILTVTLEPGDLL-YLPRGYIH 185
LP YS SQ +G I + + GD++ Y P G H
Sbjct: 140 LPHYSG---SQYNLGRKIPSSQMRRGDVIFYGPNGSQH 174
>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication,
swiss roll, PL protein; 2.00A {Canavalia ensiformis}
SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B
1cax_B
Length = 445
Score = 32.2 bits (72), Expect = 0.26
Identities = 6/49 (12%), Positives = 18/49 (36%)
Query: 153 SSPNFSQEEIGTPILTVTLEPGDLLYLPRGYIHQASTVTNEHSLHVTIS 201
E + TL GD++ +P + ++ + + + ++
Sbjct: 322 QQQQQGLESMQLRRYAATLSEGDIIVIPSSFPVALKAASDLNMVGIGVN 370
Score = 28.3 bits (62), Expect = 3.9
Identities = 7/33 (21%), Positives = 12/33 (36%)
Query: 168 TVTLEPGDLLYLPRGYIHQASTVTNEHSLHVTI 200
T L+ GD + + G N +L +
Sbjct: 129 TYKLDQGDAIKIQAGTPFYLINPDNNQNLRILK 161
>3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis,
resistomycin, metalloprotein, cyclase, lyase; 1.20A
{Streptomyces resistomycificus} PDB: 3ht2_A
Length = 145
Score = 30.3 bits (68), Expect = 0.41
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 168 TVTLEPGDLLYLPRGYIHQASTVTNE 193
T + PG+ +++PRG H T +
Sbjct: 80 TEEVGPGEAIFIPRGEPHGFVTGPGQ 105
>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase;
2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A*
Length = 337
Score = 31.3 bits (70), Expect = 0.47
Identities = 6/19 (31%), Positives = 7/19 (36%)
Query: 168 TVTLEPGDLLYLPRGYIHQ 186
L GD +P G H
Sbjct: 86 RYLLISGDYANIPAGTPHS 104
Score = 28.6 bits (63), Expect = 2.9
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 168 TVTLEPGDLLYLPRGYIHQ 186
+ L PGD L++P +H
Sbjct: 258 EIQLNPGDFLHVPANTVHS 276
>2hbw_A NLP/P60 protein; NLP/P60 family protein, structural genomics, joint
center FO structural genomics, JCSG, protein structure
initiative; HET: UNL; 1.05A {Anabaena variabilis} PDB:
2evr_A 2fg0_A
Length = 235
Score = 30.6 bits (69), Expect = 0.53
Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 3/31 (9%)
Query: 148 YLPRYSSPNFSQEEIGTPILTVTLEPGDLLY 178
+LPR + QE I L PGDL++
Sbjct: 141 WLPRDAY---QQEAFTQAITIDELAPGDLVF 168
>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant
protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2
PDB: 1ud1_A 1ucx_A
Length = 476
Score = 31.0 bits (69), Expect = 0.58
Identities = 24/119 (20%), Positives = 39/119 (32%), Gaps = 5/119 (4%)
Query: 117 FAPHYDDIEAFILQLEGKKKWKVYLP--RMVDEYLPRYSSPNFSQEEIGTPILTVTLEPG 174
P Y + I +GK + + P E + S G
Sbjct: 61 RRPSYTNGPQEIYIQQGKGIFGMIYPGCPSTFEEPQQPQQRGQSSRPQDRHQKIYNFREG 120
Query: 175 DLLYLPRGYIHQASTVTNEHSLHVTISVYQKTAWIDLLEKAMPKALQAAGATDLEFRRG 233
DL+ +P G NE + V +S+ T ++ MP+ AG + EF +
Sbjct: 121 DLIAVPTGVAW--WMYNNEDTPVVAVSIID-TNSLENQLDQMPRRFYLAGNQEQEFLKY 176
Score = 28.7 bits (63), Expect = 3.1
Identities = 5/23 (21%), Positives = 12/23 (52%)
Query: 163 GTPILTVTLEPGDLLYLPRGYIH 185
G + L+ G +L +P+ ++
Sbjct: 379 GERVFDGELQEGRVLIVPQNFVV 401
>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A
{Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A
Length = 434
Score = 30.6 bits (68), Expect = 0.76
Identities = 7/49 (14%), Positives = 15/49 (30%)
Query: 153 SSPNFSQEEIGTPILTVTLEPGDLLYLPRGYIHQASTVTNEHSLHVTIS 201
+E + L D+ +P Y + +N + I+
Sbjct: 309 QQQKQQEESLEVQRYRAELSEDDVFVIPAAYPVAINATSNLNFFAFGIN 357
>3d82_A Cupin 2, conserved barrel domain protein; structural genomics,
joint center for structural genomics; 2.05A {Shewanella
frigidimarina ncimb 400}
Length = 102
Score = 28.6 bits (64), Expect = 1.1
Identities = 6/20 (30%), Positives = 13/20 (65%)
Query: 168 TVTLEPGDLLYLPRGYIHQA 187
+TL+ G++ +P+G H+
Sbjct: 69 NITLQAGEMYVIPKGVEHKP 88
>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta
helix, germin-like PROT protein binding; HET: NAG BMA
MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A*
Length = 163
Score = 29.3 bits (65), Expect = 1.3
Identities = 18/128 (14%), Positives = 32/128 (25%), Gaps = 31/128 (24%)
Query: 60 RALPQIVWDHY-REGCSIRFLNPQTYIKPLQQLNASLQELFGCFVGANTYQTPPTAQGFA 118
R + Q+ Y EG S + ++++ LQ + P +
Sbjct: 10 RDISQMPQSSYGIEGLSHITVAGALN-HGMKEVEVWLQTI------------SPGQR-TP 55
Query: 119 PHYDDIEAFILQLEGKKKWKVYLPRMVDEYLPRYSSPNFSQEEIGTPILTVTLEPGDLLY 178
H E L+GK + S + +
Sbjct: 56 IHRHSCEEVFTVLKGKGTLLM----------------GSSSLKYPGQPQEIPFFQNTTFS 99
Query: 179 LPRGYIHQ 186
+P HQ
Sbjct: 100 IPVNDPHQ 107
>3l2p_A DNA ligase 3; DNA ligase, DNA repair, ATP-binding, cell cycle, cell
divisi damage; HET: DNA AMP; 3.00A {Homo sapiens}
Length = 579
Score = 29.7 bits (67), Expect = 1.4
Identities = 11/66 (16%), Positives = 19/66 (28%), Gaps = 12/66 (18%)
Query: 25 KKIDDILRDNVIEFKKNIDITLYEDGQRQTMDVEGRAL-PQIVW-----------DHYRE 72
++ + L I + + + + D VW H +
Sbjct: 485 ARLQNELDMVKISKDPSKIPSWLKVNKIYYPDFIVPDPKKAAVWEITGAEFSKSEAHTAD 544
Query: 73 GCSIRF 78
G SIRF
Sbjct: 545 GISIRF 550
>1v70_A Probable antibiotics synthesis protein; structural genomics,
thermus thermophilus HB8, riken structu
genomics/proteomics initiative, RSGI; 1.30A {Thermus
thermophilus} SCOP: b.82.1.9 PDB: 2dct_A
Length = 105
Score = 28.2 bits (63), Expect = 1.4
Identities = 6/26 (23%), Positives = 8/26 (30%)
Query: 168 TVTLEPGDLLYLPRGYIHQASTVTNE 193
L PG + P G H +
Sbjct: 68 EALLAPGMAAFAPAGAPHGVRNESAS 93
>2i45_A Hypothetical protein; neisseria meningitidis cupin domain,
structural genomics, PS protein structure initiative;
2.50A {Neisseria meningitidis}
Length = 107
Score = 28.3 bits (63), Expect = 1.5
Identities = 4/22 (18%), Positives = 13/22 (59%)
Query: 168 TVTLEPGDLLYLPRGYIHQAST 189
++T+ G++ +P+ H+ +
Sbjct: 68 SMTIREGEMAVVPKSVSHRPRS 89
>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint
for structural genomics, JCSG; 1.65A {Thermotoga
maritima} SCOP: b.82.1.10
Length = 126
Score = 28.2 bits (63), Expect = 1.7
Identities = 6/26 (23%), Positives = 11/26 (42%)
Query: 168 TVTLEPGDLLYLPRGYIHQASTVTNE 193
T+E G +++ IH T+
Sbjct: 87 EETVEEGFYIFVEPNEIHGFRNDTDS 112
>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint
center for structural genomics, J protein structure
initiative; 1.90A {Salmonella typhimurium LT2} SCOP:
b.82.1.24
Length = 133
Score = 28.4 bits (63), Expect = 1.7
Identities = 6/22 (27%), Positives = 14/22 (63%)
Query: 168 TVTLEPGDLLYLPRGYIHQAST 189
T+ + GD++++P+G + T
Sbjct: 94 TMIAKAGDVMFIPKGSSIEFGT 115
>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis,
biosynthetic protein, flavoprotein; HET: TRP; 2.08A
{Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A*
2oal_A* 2oam_A
Length = 550
Score = 29.3 bits (64), Expect = 1.8
Identities = 7/34 (20%), Positives = 13/34 (38%)
Query: 38 FKKNIDITLYEDGQRQTMDVEGRALPQIVWDHYR 71
+ DITL + T+ V +P + +
Sbjct: 48 LQGTADITLLQAPDIPTLGVGEATIPNLQTAFFD 81
>3kop_A Uncharacterized protein; protein with A cyclophilin-like fold,
structural genomics, J center for structural genomics,
JCSG; 1.90A {Arthrobacter SP}
Length = 188
Score = 29.0 bits (64), Expect = 1.8
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 8/49 (16%)
Query: 137 WKVYLPRMVDEYLPRYSS-------PNFSQEEIGTPILTVTLEPGDLLY 178
W LP+ + +Y+ P F+ +E G TVT PGD+ Y
Sbjct: 52 WD-ALPQSSQVFHGKYARNEIYNLVPAFAPKEPGAENTTVTPIPGDVCY 99
>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED
storage protein, sugar binding protein; 2.50A {Glycine
max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A*
Length = 416
Score = 29.4 bits (65), Expect = 1.9
Identities = 8/52 (15%), Positives = 17/52 (32%)
Query: 150 PRYSSPNFSQEEIGTPILTVTLEPGDLLYLPRGYIHQASTVTNEHSLHVTIS 201
+ +E + L D+ +P Y + +N + L I+
Sbjct: 290 EQQQKQKQEEEPLEVQRYRAELSEDDVFVIPAAYPFVVNATSNLNFLAFGIN 341
Score = 27.5 bits (60), Expect = 7.0
Identities = 22/110 (20%), Positives = 34/110 (30%), Gaps = 23/110 (20%)
Query: 77 RFLNPQTYIKPLQQLNASLQELFGC-FVGANTYQTPPTAQGFAPHYDDIEAFILQLEGKK 135
F N I+ LQ+ N +L +Q+ P PH+ D + + L G+
Sbjct: 22 LFENQNGRIRLLQRFNKRSPQLENLRDYRIVQFQSKPNTI-LLPHHADADFLLFVLSGRA 80
Query: 136 KWKVYLPRMVDEYLPRYSSPNFSQEEIGTPILTVTLEPGDLLYLPRGYIH 185
+ D Y L PGD +P G +
Sbjct: 81 ILTLVNNDDRDSY---------------------NLHPGDAQRIPAGTTY 109
>3ho1_A Argonaute; argonaute, protein-DNA-RNA complex, nucleic acid binding
Pro RNA complex; 2.60A {Thermus thermophilus} PDB:
3dlb_A* 3dlh_A* 3f73_A* 3hm9_A 3hvr_A 3hxm_A* 3hk2_A
3hjf_A
Length = 685
Score = 29.6 bits (66), Expect = 1.9
Identities = 10/92 (10%), Positives = 33/92 (35%), Gaps = 3/92 (3%)
Query: 1 DHWEKEPLYISRKQKNYYNNLITSKKIDDILRDNVIEFKKNIDITLYEDGQRQTMDVEGR 60
+ W + + ++ +N Y+ + ++ + ++ E ++ D ++GR
Sbjct: 180 EAWLAQGHPLPKRVRNAYDRR--TWELLRLGEEDPKELPLPGGLS-LLDYHASKGRLQGR 236
Query: 61 ALPQIVWDHYREGCSIRFLNPQTYIKPLQQLN 92
++ W + + + P+ L
Sbjct: 237 EGGRVAWVADPKDPRKPIPHLTGLLVPVLTLE 268
>2jyx_A Lipoprotein SPR; solution structure, construct optimized, membrane,
palmitate, structural genomics, PSI-2, protein structure
initiative; NMR {Escherichia coli K12} PDB: 2k1g_A
Length = 136
Score = 28.0 bits (63), Expect = 2.1
Identities = 20/82 (24%), Positives = 32/82 (39%), Gaps = 31/82 (37%)
Query: 134 KKKWKVYLPRMVDEYLPRYSSPNFSQEEIGTPILTVTLEPGDLL-------------YLP 180
++++ + LPR E Q+E+G + L GDL+ Y+
Sbjct: 42 REQFGLELPRSTYE-----------QQEMGKSVSRSNLRTGDLVLFRAGSTGRHVGIYIG 90
Query: 181 RG-YIHQASTVTNEHSLHVTIS 201
++H AST S V IS
Sbjct: 91 NNQFVH-AST-----SSGVIIS 106
>3h41_A NLP/P60 family protein; NLPC/P60 family protein, structural
genomics, joint center F structural genomics, JCSG; HET:
DGL PG4; 1.79A {Bacillus cereus atcc 10987}
Length = 311
Score = 28.8 bits (64), Expect = 2.5
Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 5/40 (12%)
Query: 139 VYLPRMVDEYLPRYSSPNFSQEEIGTPILTVTLEPGDLLY 178
+Y + +PR S Q G + L+ GDL++
Sbjct: 223 IY--KSHGITIPRDSG---PQSRNGVAVDKEHLQKGDLIF 257
>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha
helices merohedral/ hemihedral twinning, plant protein;
1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A
1cau_A 1cav_A 1caw_A 1cax_A
Length = 178
Score = 28.0 bits (62), Expect = 2.9
Identities = 22/110 (20%), Positives = 36/110 (32%), Gaps = 23/110 (20%)
Query: 77 RFLNPQTYIKPLQQLNASLQELFGCF-VGANTYQTPPTAQGFAPHYDDIEAFILQLEGKK 135
F N ++ LQ+ N ++L Y + P PH+ D + +L LEG+
Sbjct: 14 LFKNQHGSLRLLQRFNEDTEKLENLRDYRVLEYCSKPNTLLL-PHHSDSDLLVLVLEGQA 72
Query: 136 KWKVYLPRMVDEYLPRYSSPNFSQEEIGTPILTVTLEPGDLLYLPRGYIH 185
+ P D Y L+ GD + + G
Sbjct: 73 ILVLVNPDGRDTY---------------------KLDQGDAIKIQAGTPF 101
>2d5f_A Glycinin A3B4 subunit; soybean, globulin, 11S,SEED storage protein,
plant; 1.90A {Glycine max} PDB: 2d5h_A 1od5_A
Length = 493
Score = 28.8 bits (63), Expect = 3.3
Identities = 6/23 (26%), Positives = 11/23 (47%)
Query: 163 GTPILTVTLEPGDLLYLPRGYIH 185
G + L G LL +P+ ++
Sbjct: 408 GNAVFDGELRRGQLLVVPQNFVV 430
Score = 28.0 bits (61), Expect = 4.7
Identities = 11/74 (14%), Positives = 21/74 (28%), Gaps = 5/74 (6%)
Query: 117 FAPHYDDIEAFILQLEGKKKWKVYLPRMVDEYLPRYSSPNFSQEEIGTPIL-----TVTL 171
P Y I+ ++GK P + + + +
Sbjct: 58 HLPSYSPYPQMIIVVQGKGAIGFAFPGCPETFEKPQQQSSRRGSRSQQQLQDSHQKIRHF 117
Query: 172 EPGDLLYLPRGYIH 185
GD+L +P G +
Sbjct: 118 NEGDVLVIPPGVPY 131
>3hrl_A Endonuclease-like protein; structural genomics, PS protein
structure initiative, midwest center for structural
genomics, MCSG; 1.95A {Neisseria gonorrhoeae fa 1090}
Length = 104
Score = 27.2 bits (60), Expect = 3.4
Identities = 10/43 (23%), Positives = 19/43 (44%)
Query: 213 EKAMPKALQAAGATDLEFRRGLPIGYLRYAGLARGKPVDIQAD 255
E + + L+A +FRR P+G + + ++AD
Sbjct: 8 EAKLWQHLRAGRLNGYKFRRQQPMGNYIVDFMCVTPKLIVEAD 50
>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology,
structural genomics, GEBA, midwest center structural
genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}
Length = 126
Score = 27.5 bits (61), Expect = 3.4
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 168 TVTLEPGDLLYLPRGYIHQASTVTNE 193
T L PG +P G H+A T +
Sbjct: 80 TRVLRPGMAYTIPGGVRHRARTFEDG 105
>3qr9_A Anthranilate phosphoribosyltransferase; anthranilic acids, M
tryptophan, magnesium binding, phosphoribosyl
pyrophosphate transferase; 1.87A {Mycobacterium
tuberculosis} PDB: 1zvw_A* 2bpq_A
Length = 377
Score = 28.4 bits (64), Expect = 3.5
Identities = 14/77 (18%), Positives = 23/77 (29%), Gaps = 11/77 (14%)
Query: 239 LRYAGLARGKPVDIQADRLAMKENLKDLLAKLVEYVDLDDGVDEMG---KQLMHDALPPV 295
L G + G A + +L +L + DL + Q+M P
Sbjct: 2 LSAEGSSGGSRGGSPKAEAASVPSWPQILGRLTDNRDLA--RGQAAWAMDQIMTGNARPA 59
Query: 296 LSPEELQCSVFENGLRM 312
Q + F + M
Sbjct: 60 ------QIAAFAVAMTM 70
>4dot_A Group XVI phospholipase A2; alpha/beta fold,
phospholipase/acyltransferase, phosphatidyl
phosphatidylethanolamine, membrane, hydrolase; 1.96A
{Homo sapiens}
Length = 140
Score = 27.8 bits (61), Expect = 3.5
Identities = 12/67 (17%), Positives = 22/67 (32%), Gaps = 1/67 (1%)
Query: 171 LEPGDLLYLPRG-YIHQASTVTNEHSLHVTISVYQKTAWIDLLEKAMPKALQAAGATDLE 229
+PGDL+ + R Y H A V + + +H+ A + A+ +
Sbjct: 8 PKPGDLIEIFRPFYRHWAIYVGDGYVVHLAPPSEVAGAGAASVMSALTDKAIVKKELLYD 67
Query: 230 FRRGLPI 236
Sbjct: 68 VAGSDKY 74
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.6 bits (60), Expect = 3.9
Identities = 11/47 (23%), Positives = 19/47 (40%), Gaps = 19/47 (40%)
Query: 86 KPLQQLNASLQELFGCFVGANTYQTPPTAQGFAPHYDDIEAFILQLE 132
+ L++L ASL+ L+ +A A I+A +E
Sbjct: 20 QALKKLQASLK-LYA----------DDSAPALA-----IKA---TME 47
Score = 27.2 bits (59), Expect = 5.9
Identities = 11/46 (23%), Positives = 18/46 (39%), Gaps = 18/46 (39%)
Query: 260 KENLKDLLAKLVEYVDLDDGVDEMGKQLMHDALPPVLSPEELQCSV 305
K+ LK L A L Y D D+ P L+ ++ ++
Sbjct: 19 KQALKKLQASLKLYAD--------------DS-APALA---IKATM 46
>4axo_A EUTQ, ethanolamine utilization protein; structural protein,
bacterial microcompartment, BMC; 1.00A {Clostridium
difficile}
Length = 151
Score = 27.3 bits (60), Expect = 4.1
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 168 TVTLEPGDLLYLPRGYIHQAST 189
V+ G+L+++P+G Q S
Sbjct: 103 KVSASSGELIFIPKGSKIQFSV 124
>3bqk_A Pfemp1 protein, erythrocyte membrane protein 1; malaria, pregnancy,
VAR2CSA encoded pfemp1 protein, DBL3X DO chondroitin
sulphate A; 1.80A {Plasmodium falciparum} PDB: 3bqi_A
3bql_A 3cml_A 3cpz_A
Length = 360
Score = 28.1 bits (62), Expect = 4.1
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 13 KQKNYYNNLITSKKIDDILRDNVIEFKKN 41
KQK Y N K D+L++N E
Sbjct: 304 KQKTKYENKYVGKSASDLLKENYPECISA 332
>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A
{Arachis hypogaea}
Length = 510
Score = 28.4 bits (62), Expect = 4.1
Identities = 9/66 (13%), Positives = 19/66 (28%), Gaps = 12/66 (18%)
Query: 163 GTPILTVTLEPGDLLYLPRGYIHQASTVTNEHSLHVTISVYQKTAWIDLLEKAMPKALQA 222
G + L+ G +L +P+ + S ++ + P
Sbjct: 413 GNRVYDEELQEGHVLVVPQNFA------------VAGKSQSDNFEYVAFKTDSRPSIANL 460
Query: 223 AGATDL 228
AG +
Sbjct: 461 AGENSV 466
>1fi2_A Oxalate oxidase, germin; beta-jellyroll, oxidoreductase; 1.60A
{Hordeum vulgare} SCOP: b.82.1.2 PDB: 2et1_A 2ete_A*
2et7_A
Length = 201
Score = 27.9 bits (61), Expect = 4.3
Identities = 9/55 (16%), Positives = 19/55 (34%)
Query: 157 FSQEEIGTPILTVTLEPGDLLYLPRGYIHQASTVTNEHSLHVTISVYQKTAWIDL 211
+ G + + + G+ +PRG +H V + V Q + +
Sbjct: 109 LGSLDSGNKLYSRVVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQNPGIVFV 163
>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone
NAME 3174C1TCT3B1, T T1521, PSI, protein initiative;
2.60A {Escherichia coli} SCOP: b.82.1.11
Length = 261
Score = 27.7 bits (61), Expect = 5.2
Identities = 10/38 (26%), Positives = 15/38 (39%), Gaps = 3/38 (7%)
Query: 168 TVTLEPGDLLYLPRGYIHQASTVTNEHSLHVTISVYQK 205
T L G LY P G + N + I +Y++
Sbjct: 100 TFALSEGGYLYCPPGSLMT---FVNAQAEDSQIFLYKR 134
>1zrr_A E-2/E-2' protein; nickel, cupin, beta helix, methionine salvage,
oxidoreductase; NMR {Klebsiella oxytoca} SCOP: b.82.1.6
PDB: 2hji_A
Length = 179
Score = 27.2 bits (60), Expect = 5.5
Identities = 6/26 (23%), Positives = 10/26 (38%)
Query: 169 VTLEPGDLLYLPRGYIHQASTVTNEH 194
V E DL+ +P H + +
Sbjct: 124 VLCEKNDLISVPAHTPHWFDMGSEPN 149
>4dpz_X HRAS-like suppressor 2; alpha/beta fold, enzyme phospholipid
acyltransferase, hydrol transferase; 1.25A {Homo
sapiens} PDB: 2kyt_A
Length = 137
Score = 26.9 bits (59), Expect = 5.5
Identities = 13/67 (19%), Positives = 22/67 (32%), Gaps = 1/67 (1%)
Query: 171 LEPGDLLYLPR-GYIHQASTVTNEHSLHVTISVYQKTAWIDLLEKAMPKALQAAGATDLE 229
GDL+ + R GY H A V + + +H+ + A + A+
Sbjct: 8 PRLGDLIEISRFGYAHWAIYVGDGYVVHLAPASEIAGAGAASVLSALTNKAIVKKELLSV 67
Query: 230 FRRGLPI 236
G
Sbjct: 68 VAGGDNY 74
>3qac_A 11S globulin SEED storage protein; 11S SEED storage protein
(globulins) family, SEED storage PR plant protein; 2.27A
{Amaranthus hypochondriacus}
Length = 465
Score = 27.9 bits (61), Expect = 5.6
Identities = 24/189 (12%), Positives = 40/189 (21%), Gaps = 32/189 (16%)
Query: 72 EGCSIRFLNPQTYIKPLQQLNASLQELFGCFVGANTYQTPPTAQGFAPHYDDIEAFILQL 131
E + + + V P P + I
Sbjct: 31 ERGLTEVWDSNE--QEFRCAG----------VSVIRRTIEPHGL-LLPSFTSAPELIYIE 77
Query: 132 EGKKKWKVYLPRMVDEYLPRYSSPNFSQEEIGTPIL-----------------TVTLEPG 174
+G + +P + Y ++E L G
Sbjct: 78 QGNGITGMMIPGCPETYESGSQQFQGGEDERIREQGSRKFGMRGDRFQDQHQKIRHLREG 137
Query: 175 DLLYLPRGYIHQASTVTNEHSLHVTISVYQKTAWIDLLEKAMPKALQAAGATDLEFRRGL 234
D+ +P G H N V + + + L+K P AG E
Sbjct: 138 DIFAMPAGVSH--WAYNNGDQPLVAVILIDTANHANQLDKNFPTRFYLAGKPQQEHSGEH 195
Query: 235 PIGYLRYAG 243
G
Sbjct: 196 QFSRESRRG 204
>1x82_A Glucose-6-phosphate isomerase; cupin superfamily, hyperthermophIle,
phosphoglucose isomerase, extremeophIle; HET: PA5; 1.50A
{Pyrococcus furiosus} SCOP: b.82.1.7 PDB: 1x7n_A* 1x8e_A
1qxr_A* 1qxj_A* 1qy4_A* 2gc1_A* 2gc0_A* 2gc2_A* 2gc3_A*
3sxw_A 1j3q_A 1j3p_A 1j3r_A*
Length = 190
Score = 27.3 bits (60), Expect = 5.9
Identities = 6/19 (31%), Positives = 14/19 (73%)
Query: 168 TVTLEPGDLLYLPRGYIHQ 186
+++EPG ++Y+P + H+
Sbjct: 120 WISMEPGTVVYVPPYWAHR 138
>2jer_A Agmatine deiminase; hydrolase, tetramer, AGDI, 5- fold
pseudosymmetric structure, agmatine degradation pathway,
covalent amidino adduct; HET: AGT; 1.65A {Enterococcus
faecalis} SCOP: d.126.1.6
Length = 389
Score = 27.7 bits (61), Expect = 6.9
Identities = 11/84 (13%), Positives = 22/84 (26%), Gaps = 2/84 (2%)
Query: 101 CFVGANTYQTPPTAQGFAPHYDDIEAFILQLEGKKKWKVYLPRMVDEYLPRYSSPNFSQE 160
CF+ T +P Y+ + +L K ++ L +
Sbjct: 224 CFIAPGEVACIYTEDQNSPFYEAAQDAYQRLLKMTDAKGRQLKVH--KLCCPVKNVTIKG 281
Query: 161 EIGTPILTVTLEPGDLLYLPRGYI 184
+ T+ D Y+
Sbjct: 282 SFKIDFVEGTMPREDGDICIASYM 305
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate,
metal BI protein; 1.75A {Bacillus subtilis} SCOP:
b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A
2uya_A 3s0m_A
Length = 385
Score = 27.5 bits (60), Expect = 6.9
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 168 TVTLEPGDLLYLPRGYIHQASTVTNE 193
T + GD+ Y+P H + +E
Sbjct: 302 TFNYQAGDVGYVPFAMGHYVENIGDE 327
>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural
genomics, PSI-2, protein structur initiative; 1.85A
{Rhodopseudomonas palustris}
Length = 156
Score = 26.8 bits (59), Expect = 6.9
Identities = 6/26 (23%), Positives = 11/26 (42%)
Query: 168 TVTLEPGDLLYLPRGYIHQASTVTNE 193
+ GDL+++P HQ +
Sbjct: 83 ISDVAQGDLVFIPPMTWHQFRANRGD 108
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis,
anticapsin synthesis, BI-Cu double stranded beta helix,
antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus
subtilis} PDB: 3h7y_A* 3h9a_A*
Length = 243
Score = 27.5 bits (60), Expect = 7.0
Identities = 5/26 (19%), Positives = 10/26 (38%)
Query: 168 TVTLEPGDLLYLPRGYIHQASTVTNE 193
TV ++ G + H A + +
Sbjct: 185 TVEMKFGTAYFCEPREDHGAINRSEK 210
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding
protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A
{Synechocystis SP}
Length = 361
Score = 27.4 bits (60), Expect = 7.2
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 168 TVTLEPGDLLYLPRGYIHQASTVTNE 193
L+ GD+ Y+P+GY H + +
Sbjct: 279 VSRLQQGDVGYVPKGYGHAIRNSSQK 304
>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction,
cupin, immune system; 1.40A {Xanthomonas campestris}
PDB: 2ilb_A 3h50_A
Length = 113
Score = 26.2 bits (58), Expect = 7.9
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 168 TVTLEPGDLLYLPRGYIHQ 186
T L+ G L+ + RG H+
Sbjct: 63 TQALQAGSLIAIERGQAHE 81
>1vr3_A Acireductone dioxygenase; 13543033, structural genomics, JOI for
structural genomics, JCSG, protein structure initiative
oxidoreductase; 2.06A {Mus musculus} SCOP: b.82.1.6
Length = 191
Score = 26.9 bits (59), Expect = 8.0
Identities = 9/41 (21%), Positives = 19/41 (46%)
Query: 154 SPNFSQEEIGTPILTVTLEPGDLLYLPRGYIHQASTVTNEH 194
S F + + +++E GD++ LP G H+ + +
Sbjct: 114 SGYFDVRDKEDKWIRISMEKGDMITLPAGIYHRFTLDEKNY 154
>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2
fold, unknown function, PSI-2, structure initiative;
HET: MSE; 2.30A {Rhodospirillum rubrum}
Length = 166
Score = 26.9 bits (59), Expect = 8.1
Identities = 7/26 (26%), Positives = 11/26 (42%)
Query: 168 TVTLEPGDLLYLPRGYIHQASTVTNE 193
+ P DL+ +P HQ +E
Sbjct: 92 VSAVAPYDLVTIPGWSWHQFRAPADE 117
>2phl_A Phaseolin; plant SEED storage protein(vicilin); HET: NAG; 2.20A
{Phaseolus vulgaris} SCOP: b.82.1.2 b.82.1.2 PDB:
1phs_A*
Length = 397
Score = 27.1 bits (59), Expect = 8.7
Identities = 8/48 (16%), Positives = 16/48 (33%)
Query: 154 SPNFSQEEIGTPILTVTLEPGDLLYLPRGYIHQASTVTNEHSLHVTIS 201
P ++E + L D+ +P Y +N + I+
Sbjct: 277 GPKGNKETLEYESYRAELSKDDVFVIPAAYPVAIKATSNVNFTGFGIN 324
>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta
barrel protein, PSI, protei structure initiative; 2.70A
{Pseudomonas aeruginosa} SCOP: b.82.1.11
Length = 278
Score = 27.0 bits (59), Expect = 9.4
Identities = 15/100 (15%), Positives = 36/100 (36%), Gaps = 16/100 (16%)
Query: 119 PHYDDIEAFIL---QLEGKKKWKVYLPRMVDEYLPRYSSPNFSQEEI-----GTPILTV- 169
P +D++ +++ + + Y+ + + + E + G LT+
Sbjct: 47 PFWDNMRMWVIARPLSGFAETFSQYIVELAPNGGSDKPEQDPNAEAVLFVVEGELSLTLQ 106
Query: 170 ----TLEPGDLLYLPRGYIHQASTVTNEHSLHVTISVYQK 205
++PG ++P G ++ V N H +K
Sbjct: 107 GQVHAMQPGGYAFIPPGADYK---VRNTTGQHTRFHWIRK 143
>1ulv_A Glucodextranase; GH family 15, (alpha-alpha)6-barrel, SLH domain,
hydrolase; HET: ACR; 2.42A {Arthrobacter globiformis}
SCOP: a.102.1.5 b.1.18.2 b.1.9.3 b.30.5.5 PDB: 1ug9_A*
Length = 1020
Score = 27.1 bits (59), Expect = 9.7
Identities = 9/56 (16%), Positives = 15/56 (26%), Gaps = 5/56 (8%)
Query: 104 GANTYQTPPTAQGFAPHYDDIEAF-ILQLEGKKKWKVYLPRMVDEYLPRYSSPNFS 158
G TY PT + P D+ + + + E + S
Sbjct: 789 GPGTY-RYPTNSAYVPGAFDLTGVDVYDAGDDYAFVA---TIAGEVTNPWGGQAIS 840
>3s7i_A Allergen ARA H 1, clone P41B; bicupin, vicilin, storage SEED
protein; 2.35A {Arachis hypogaea} PDB: 3s7e_A 3smh_A
Length = 418
Score = 27.1 bits (59), Expect = 10.0
Identities = 18/123 (14%), Positives = 37/123 (30%), Gaps = 23/123 (18%)
Query: 77 RFLNPQTYIKPLQQLNASLQELFGC-FVGANTYQTPPTAQGFAPHYDDIEAFILQLEGKK 135
R+ N I+ LQ+ + ++ + P P + D + ++ +G+
Sbjct: 17 RYGNQNGRIRVLQRFDQRSRQFQNLQNHRIVQIEAKPNTLVL-PKHADADNILVIQQGQA 75
Query: 136 KWKVYLPRMVDEYLPRYSSPNFSQEEIGTPILTVTLEPGDLLYLPRGYIHQASTVTNEHS 195
V + L+ G L +P G+I + +
Sbjct: 76 TVTVANGNNRKSF---------------------NLDEGHALRIPSGFISYILNRHDNQN 114
Query: 196 LHV 198
L V
Sbjct: 115 LRV 117
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.137 0.404
Gapped
Lambda K H
0.267 0.0617 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,470,035
Number of extensions: 340906
Number of successful extensions: 928
Number of sequences better than 10.0: 1
Number of HSP's gapped: 905
Number of HSP's successfully gapped: 89
Length of query: 339
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 245
Effective length of database: 4,077,219
Effective search space: 998918655
Effective search space used: 998918655
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.4 bits)