RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13797
(339 letters)
>d1vrba1 b.82.2.11 (A:8-326) Putative asparaginyl hydroxylase YxbC
{Bacillus subtilis [TaxId: 1423]}
Length = 319
Score = 126 bits (318), Expect = 1e-34
Identities = 53/296 (17%), Positives = 107/296 (36%), Gaps = 36/296 (12%)
Query: 1 DHWEKEPLYISRKQKNYYNNLITSKKIDDILRDNVIEFKKNIDITLYEDGQRQTMDVEGR 60
++W +PL R + + ++ +K+ + I + + + + +
Sbjct: 17 EYWPVKPLVA-RGEVERFTSIPGFEKVRTLENVLAIYNNPVMVVGDAVIEESEGITDRFL 75
Query: 61 ALPQIVWDHYREGCSIRFLNPQTYIKPLQQLNASLQELFGCFVGANT---YQTPPTAQGF 117
P + Y +G ++ F +I +++ L+ G ++ GF
Sbjct: 76 VSPAEALEWYEKGAALEFDFTDLFIPQVRRWIEKLKAELRLPAGTSSKAIVYAAKNGGGF 135
Query: 118 APHYDDIEAFILQLEGKKKWKVYLPRMVDEYLPRY--SSPNFSQEEI------------G 163
H+D I Q++G+K WK+ V + Y S + +++
Sbjct: 136 KAHFDAYTNLIFQIQGEKTWKLAKNENVSNPMQHYDLSEAPYYPDDLQSYWKGDPPKEDL 195
Query: 164 TPILTVTLEPGDLLYLPRGYIHQASTVTNEHSLHVTISVYQKTAWIDLLEKAMPKALQAA 223
V L PG +LYLPRG H + +L++T + + AW+DL+ A+ K L +
Sbjct: 196 PDAEIVNLTPGTMLYLPRGLWHSTKSDQATLALNIT---FGQPAWLDLMLAALRKKLIS- 251
Query: 224 GATDLEFRRGLPIGYLRYAGLARGKPVDIQADRLAMKENLKDLLAKLVEYVDLDDG 279
D FR + + + + L+ L+ L E +
Sbjct: 252 ---DNRFRELAVNHQSLHE-----------SSKSELNGYLESLIQTLSENAETLTP 293
>d1h2ka_ b.82.2.6 (A:) Hypoxia-inducible factor HIF ihhibitor (FIH1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 335
Score = 60.4 bits (145), Expect = 6e-11
Identities = 47/283 (16%), Positives = 89/283 (31%), Gaps = 45/283 (15%)
Query: 7 PLYISRKQKNYYNNLITSKKIDDILRDNVIEFKKNIDITLYEDGQRQTMDVEGRALPQIV 66
+Y + K Y + + + E K + +Q E L Q +
Sbjct: 77 SVYSASTHKFLYYDEKKMANFQNFKPRSNREEMKFHEFVEKLQDIQQRGGEERLYLQQTL 136
Query: 67 WDHYREGCSIRFLNPQTYIKPLQQLNASLQELFG--CFVGANTYQTPPTAQGFAPHYDDI 124
D + FL QQ +L +G TP HYD+
Sbjct: 137 NDTVGRKIVMDFLGFNWNWINKQQGKRGWGQLTSNLLLIGMEGNVTPA-------HYDEQ 189
Query: 125 EAFILQLEGKKKWKVYLPRMVDEYLP--------RYSSPNFSQEEI-------GTPILTV 169
+ F Q++G K+ ++ P + P R S +F +
Sbjct: 190 QNFFAQIKGYKRCILFPPDQFECLYPYPVHHPCDRQSQVDFDNPDYERFPNFQNVVGYET 249
Query: 170 TLEPGDLLYLPRGYIHQASTVTNEHSLHVTISVYQKTAWIDLLEKAMPKALQAAGATDLE 229
+ PGD+LY+P + H ++ + +T++ + K A + KA Q +
Sbjct: 250 VVGPGDVLYIPMYWWHHIESLL-NGGITITVNFWYKGAPTPKRIEYPLKAHQ-----KVA 303
Query: 230 FRRGLPIGYLRYAGLARGKPVDIQADRLAMKENLKDLLAKLVE 272
R + + + L + + LL +++
Sbjct: 304 IMRNIE---------------KMLGEALGNPQEVGPLLNTMIK 331
>d1y3ta1 b.82.1.5 (A:5-334) Hypothetical protein YxaG {Bacillus
subtilis [TaxId: 1423]}
Length = 330
Score = 30.6 bits (68), Expect = 0.27
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 168 TVTLEPGDLLYLPRGYIHQ 186
+ L PGD L++P +H
Sbjct: 254 EIQLNPGDFLHVPANTVHS 272
Score = 26.4 bits (57), Expect = 6.1
Identities = 6/19 (31%), Positives = 7/19 (36%)
Query: 168 TVTLEPGDLLYLPRGYIHQ 186
L GD +P G H
Sbjct: 82 RYLLISGDYANIPAGTPHS 100
>d1j58a_ b.82.1.2 (A:) Oxalate decarboxylase OxdC (YvrK) {Bacillus
subtilis [TaxId: 1423]}
Length = 372
Score = 30.4 bits (68), Expect = 0.30
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 168 TVTLEPGDLLYLPRGYIHQASTVTNE 193
T + GD+ Y+P H + +E
Sbjct: 295 TFNYQAGDVGYVPFAMGHYVENIGDE 320
Score = 27.3 bits (60), Expect = 3.3
Identities = 15/71 (21%), Positives = 20/71 (28%), Gaps = 6/71 (8%)
Query: 168 TVTLEPGDLLYLPRGYIHQASTVTNEHSLHVTISV----YQKTAWIDLLEKAMPKALQAA 223
+ GDL Y P G H + + T + PK + AA
Sbjct: 116 IDDVGEGDLWYFPSGLPHSIQALEEGAEFLLVFDDGSFSENSTFQLTDWLAHTPKEVIAA 175
Query: 224 --GATDLEFRR 232
G T E
Sbjct: 176 NFGVTKEEISN 186
>d1juha_ b.82.1.5 (A:) Quercetin 2,3-dioxygenase {Aspergillus
japonicus [TaxId: 34381]}
Length = 348
Score = 30.2 bits (67), Expect = 0.34
Identities = 12/77 (15%), Positives = 16/77 (20%), Gaps = 21/77 (27%)
Query: 111 PPTAQGFAPHYDDIEA-FILQLEGKKKWKVYLPRMVDEYLPRYSSPNFSQEEIGTPILTV 169
A G PH +G + + T
Sbjct: 55 HSDALGVLPHIHQKHYENFYCNKGSFQLWAQSGNETQQ--------------------TR 94
Query: 170 TLEPGDLLYLPRGYIHQ 186
L GD +PR H
Sbjct: 95 VLSSGDYGSVPRNVTHT 111
Score = 29.4 bits (65), Expect = 0.53
Identities = 5/19 (26%), Positives = 9/19 (47%)
Query: 168 TVTLEPGDLLYLPRGYIHQ 186
L GD+ ++P G +
Sbjct: 290 ATELGSGDVAFIPGGVEFK 308
>g1dgw.1 b.82.1.2 (X:,Y:) Seed storage 7S protein {Jack bean
(Canavalia ensiformis), canavalin/vinculin [TaxId:
3823]}
Length = 168
Score = 29.2 bits (65), Expect = 0.50
Identities = 5/34 (14%), Positives = 16/34 (47%)
Query: 168 TVTLEPGDLLYLPRGYIHQASTVTNEHSLHVTIS 201
TL GD++ +P + ++ + + + ++
Sbjct: 82 AATLSEGDIIVIPSSFPVALKAASDLNMVGIGVN 115
>d2et1a1 b.82.1.2 (A:1-201) Germin {Barley (Hordeum vulgare) [TaxId:
4513]}
Length = 201
Score = 29.1 bits (65), Expect = 0.54
Identities = 6/29 (20%), Positives = 13/29 (44%)
Query: 157 FSQEEIGTPILTVTLEPGDLLYLPRGYIH 185
+ G + + + G+ +PRG +H
Sbjct: 109 LGSLDSGNKLYSRVVRAGETFVIPRGLMH 137
>d2zkmx4 c.1.18.1 (X:312-660) Phospholipase C-beta-2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 349
Score = 29.3 bits (65), Expect = 0.59
Identities = 24/97 (24%), Positives = 38/97 (39%), Gaps = 17/97 (17%)
Query: 12 RKQKNYYNNLITSKKIDDILRDNVIEF----KKNIDITLYEDGQRQT---MDVEGRALPQ 64
+K ++Y + T K D+L ++F K+ + Y G R PQ
Sbjct: 251 QKNRSYVISSFTELKAYDLLSKASVQFVDYNKRQMSRI-YPKGTRMDSSNYM------PQ 303
Query: 65 IVWDHYREGCSIRFLNPQTYIKPLQQLNASLQELFGC 101
+ W+ GC + LN QT P+QQ A +
Sbjct: 304 MFWNA---GCQMVALNFQTMDLPMQQNMAVFEFNGQS 337
>d2phla2 b.82.1.2 (A:220-381) Seed storage 7S protein {French bean
(Phaseolus vulgaris), phaseolin [TaxId: 3885]}
Length = 162
Score = 28.4 bits (63), Expect = 0.73
Identities = 8/47 (17%), Positives = 16/47 (34%)
Query: 155 PNFSQEEIGTPILTVTLEPGDLLYLPRGYIHQASTVTNEHSLHVTIS 201
P ++E + L D+ +P Y +N + I+
Sbjct: 59 PKGNKETLEYESYRAELSKDDVFVIPAAYPVAIKATSNVNFTGFGIN 105
>d1uika2 b.82.1.2 (A:351-535) Seed storage 7S protein {Soybean
(Glycine max), beta-conglycinin alpha prime subunit
[TaxId: 3847]}
Length = 185
Score = 28.0 bits (62), Expect = 1.2
Identities = 6/44 (13%), Positives = 16/44 (36%)
Query: 158 SQEEIGTPILTVTLEPGDLLYLPRGYIHQASTVTNEHSLHVTIS 201
++ + L D+ +P GY + ++ + I+
Sbjct: 91 EEQPLEVRKYRAELSEQDIFVIPAGYPVVVNATSDLNFFAFGIN 134
>d1sq4a_ b.82.1.11 (A:) Glyoxylate-induced protein PA1140
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 273
Score = 28.1 bits (62), Expect = 1.4
Identities = 9/67 (13%), Positives = 21/67 (31%), Gaps = 4/67 (5%)
Query: 168 TVTLEPGDLLYLPRGYIHQASTVTNEHS-LHVTISVYQKTAWIDLLEKAMPKALQAAGAT 226
++PG ++P G ++ T +H+ H + + +D +
Sbjct: 107 VHAMQPGGYAFIPPGADYKVRNTTGQHTRFHW---IRKHYQKVDGVPLPEAFVTNEQDIQ 163
Query: 227 DLEFRRG 233
L
Sbjct: 164 PLVMPDT 170
Score = 26.6 bits (58), Expect = 4.4
Identities = 5/19 (26%), Positives = 8/19 (42%)
Query: 168 TVTLEPGDLLYLPRGYIHQ 186
V +E GD ++L
Sbjct: 229 WVEVEAGDFMWLRAFCPQA 247
>d1ulva3 b.1.9.3 (A:776-1020) Glucodextranase, domain C
{Arthrobacter globiformis [TaxId: 1665]}
Length = 245
Score = 28.0 bits (62), Expect = 1.4
Identities = 9/56 (16%), Positives = 14/56 (25%), Gaps = 5/56 (8%)
Query: 104 GANTYQTPPTAQGFAPHYDDIEAF-ILQLEGKKKWKVYLPRMVDEYLPRYSSPNFS 158
G TY PT + P D+ + + + V S
Sbjct: 14 GPGTY-RYPTNSAYVPGAFDLTGVDVYDAGDDYAFVATIAGEVTNPWG---GQAIS 65
>d1zvfa1 b.82.1.20 (A:1-175) 3-hydroxyanthranilate-3,4-dioxygenase
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 175
Score = 27.4 bits (61), Expect = 1.9
Identities = 10/68 (14%), Positives = 18/68 (26%), Gaps = 17/68 (25%)
Query: 120 HYDDIEAFILQLEGKKKWKVYLPRMVDEYLPRYSSPNFSQEEIGTPILTVTLEPGDLLYL 179
H + + Q +G KV + + + + + GD L
Sbjct: 49 HINPTPEWFYQKKGSMLLKVVD-----------------ETDAEPKFIDIIINEGDSYLL 91
Query: 180 PRGYIHQA 187
P H
Sbjct: 92 PGNVPHSP 99
>d1zrra1 b.82.1.6 (A:1-179) Acireductone dioxygenase {Klebsiella
pneumoniae [TaxId: 573]}
Length = 179
Score = 27.5 bits (61), Expect = 2.0
Identities = 9/42 (21%), Positives = 15/42 (35%)
Query: 159 QEEIGTPILTVTLEPGDLLYLPRGYIHQASTVTNEHSLHVTI 200
IG + V E DL+ +P H + + + I
Sbjct: 114 CLHIGDEVFQVLCEKNDLISVPAHTPHWFDMGSEPNFTAIRI 155
>d1od5a2 b.82.1.2 (A:321-493) Seed storage 7S protein {Soybean
(Glycine max), glycinin A3B4 [TaxId: 3847]}
Length = 173
Score = 27.2 bits (60), Expect = 2.0
Identities = 5/18 (27%), Positives = 9/18 (50%)
Query: 168 TVTLEPGDLLYLPRGYIH 185
L G LL +P+ ++
Sbjct: 93 DGELRRGQLLVVPQNFVV 110
>d1fxza2 b.82.1.2 (A:297-470) Seed storage 7S protein {Soybean
(Glycine max), proglycinin [TaxId: 3847]}
Length = 174
Score = 27.2 bits (60), Expect = 2.1
Identities = 4/19 (21%), Positives = 10/19 (52%)
Query: 167 LTVTLEPGDLLYLPRGYIH 185
L+ G +L +P+ ++
Sbjct: 87 FDGELQEGRVLIVPQNFVV 105
>d1lr5a_ b.82.1.2 (A:) Auxin binding protein {Maize (Zea mays)
[TaxId: 4577]}
Length = 160
Score = 27.1 bits (59), Expect = 2.2
Identities = 5/31 (16%), Positives = 7/31 (22%)
Query: 168 TVTLEPGDLLYLPRGYIHQASTVTNEHSLHV 198
+ +P HQ L V
Sbjct: 89 EIPFFQNTTFSIPVNDPHQVWNSDEHEDLQV 119
>d2phda1 b.82.1.23 (A:17-367) Gentisate 1,2-dioxygenase
{Pseudaminobacter salicylatoxidans [TaxId: 93369]}
Length = 351
Score = 27.4 bits (60), Expect = 2.5
Identities = 19/140 (13%), Positives = 33/140 (23%), Gaps = 38/140 (27%)
Query: 47 YEDGQRQTMDVEGRALPQIVWDHYREGCSIRFLNPQTYIKPLQQLNASLQELFGCFVGAN 106
+E R + +IR++NP T + L L
Sbjct: 219 WEFTDRALTEQLLLEDEGQPATVAPGHAAIRYVNPTTGGDVMPTLRCEFHRL-------- 270
Query: 107 TYQTPPTAQGFAPHYDDIEAFILQLEGKKKWKVYLPRMVDEYLPRYSSPNFSQEEIGTPI 166
+ + F + EG V +++
Sbjct: 271 ----RAGTETATRNEVGSTVFQV-FEGA--GAV----VMNGE------------------ 301
Query: 167 LTVTLEPGDLLYLPRGYIHQ 186
T LE GD+ +P
Sbjct: 302 -TTKLEKGDMFVVPSWVPWS 320
>d1fxza1 b.82.1.2 (A:10-248) Seed storage 7S protein {Soybean
(Glycine max), proglycinin [TaxId: 3847]}
Length = 239
Score = 27.2 bits (60), Expect = 2.8
Identities = 23/121 (19%), Positives = 42/121 (34%), Gaps = 9/121 (7%)
Query: 117 FAPHYDDIEAFILQLEGKKKWKVYLPRMVDEYLPRYSSPNFSQEEIGTPI----LTVTLE 172
P Y + I +GK + + P + + + P
Sbjct: 52 RRPSYTNGPQEIYIQQGKGIFGMIYPGCPSTFEEPQQP--QQRGQSSRPQDRHQKIYNFR 109
Query: 173 PGDLLYLPRGYIHQASTVTNEHSLHVTISVYQKTAWIDLLEKAMPKALQAAGATDLEFRR 232
GDL+ +P G NE + V +S+ + + L++ MP+ AG + EF +
Sbjct: 110 EGDLIAVPTGVAW--WMYNNEDTPVVAVSIIDTNSLENQLDQ-MPRRFYLAGNQEQEFLK 166
Query: 233 G 233
Sbjct: 167 Y 167
>d1qasa3 c.1.18.1 (A:299-625) Phospholipase C isozyme D1 (PLC-D1)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 327
Score = 26.9 bits (59), Expect = 3.2
Identities = 12/39 (30%), Positives = 16/39 (41%), Gaps = 3/39 (7%)
Query: 63 PQIVWDHYREGCSIRFLNPQTYIKPLQQLNASLQELFGC 101
P +W+ GC I LN QT + Q+ GC
Sbjct: 266 PVEMWNG---GCQIVALNFQTPGPEMDVYLGCFQDNGGC 301
>d1uija1 b.82.1.2 (A:6-175) Seed storage 7S protein {Soybean
(Glycine max), beta-conglycinin beta subunit [TaxId:
3847]}
Length = 170
Score = 26.4 bits (58), Expect = 3.3
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 168 TVTLEPGDLLYLPRGYIH 185
+ L PGD +P G +
Sbjct: 87 SYNLHPGDAQRIPAGTTY 104
>d1uika1 b.82.1.2 (A:148-350) Seed storage 7S protein {Soybean
(Glycine max), beta-conglycinin alpha prime subunit
[TaxId: 3847]}
Length = 203
Score = 26.8 bits (59), Expect = 3.3
Identities = 21/109 (19%), Positives = 33/109 (30%), Gaps = 21/109 (19%)
Query: 77 RFLNPQTYIKPLQQLNASLQELFGCFVGANTYQTPPTAQGFAPHYDDIEAFILQLEGKKK 136
F N +++ LQ+ N Q+L PH+ D + I+ L G
Sbjct: 13 LFKNQYGHVRVLQRFNKRSQQLQNLRDYRILEFNSKPNTLLLPHHADADYLIVILNGTAI 72
Query: 137 WKVYLPRMVDEYLPRYSSPNFSQEEIGTPILTVTLEPGDLLYLPRGYIH 185
+ D Y L+ GD L +P G +
Sbjct: 73 LTLVNNDDRDSY---------------------NLQSGDALRVPAGTTY 100
>d1dgwa_ b.82.1.2 (A:) Seed storage 7S protein {Jack bean (Canavalia
ensiformis), canavalin/vinculin [TaxId: 3823]}
Length = 178
Score = 26.5 bits (58), Expect = 3.6
Identities = 5/18 (27%), Positives = 8/18 (44%)
Query: 168 TVTLEPGDLLYLPRGYIH 185
T L+ GD + + G
Sbjct: 84 TYKLDQGDAIKIQAGTPF 101
>d2phla1 b.82.1.2 (A:11-210) Seed storage 7S protein {French bean
(Phaseolus vulgaris), phaseolin [TaxId: 3885]}
Length = 200
Score = 26.4 bits (58), Expect = 4.3
Identities = 12/69 (17%), Positives = 16/69 (23%), Gaps = 15/69 (21%)
Query: 117 FAPHYDDIEAFILQLEGKKKWKVYLPRMVDEYLPRYSSPNFSQEEIGTPILTVTLEPGDL 176
P D E ++ G + P EY S D
Sbjct: 55 LLPQQADAELLLVVRSGSAILVLVKPDDRREYFFLTSD---------------NPIFSDH 99
Query: 177 LYLPRGYIH 185
+P G I
Sbjct: 100 QKIPAGTIF 108
>d1sfna_ b.82.1.11 (A:) Hypothetical protein DR1152 {Deinococcus
radiodurans [TaxId: 1299]}
Length = 245
Score = 26.6 bits (58), Expect = 4.4
Identities = 2/26 (7%), Positives = 8/26 (30%)
Query: 168 TVTLEPGDLLYLPRGYIHQASTVTNE 193
+ GD++++ +
Sbjct: 205 YYPVTAGDIIWMGAHCPQWYGALGRN 230
>d3bu7a1 b.82.1.23 (A:19-373) Gentisate 1,2-dioxygenase
{Silicibacter pomeroyi [TaxId: 89184]}
Length = 355
Score = 26.6 bits (58), Expect = 4.8
Identities = 3/19 (15%), Positives = 6/19 (31%)
Query: 168 TVTLEPGDLLYLPRGYIHQ 186
D+ +P H+
Sbjct: 295 RFDWSEHDIFCVPAWTWHE 313
>d1od5a1 b.82.1.2 (A:7-251) Seed storage 7S protein {Soybean
(Glycine max), glycinin A3B4 [TaxId: 3847]}
Length = 245
Score = 26.4 bits (58), Expect = 5.0
Identities = 21/124 (16%), Positives = 40/124 (32%), Gaps = 8/124 (6%)
Query: 117 FAPHYDDIEAFILQLEGKKKWKVYLPRMVDEYLPRYSSPNFSQEEIGTPIL-----TVTL 171
P Y I+ ++GK P + + + +
Sbjct: 52 HLPSYSPYPQMIIVVQGKGAIGFAFPGCPETFEKPQQQSSRRGSRSQQQLQDSHQKIRHF 111
Query: 172 EPGDLLYLPRGYIHQASTVTNEHSLHVTISVYQKTAWIDLLEKAMPKALQAAGATDLEFR 231
GD+L +P G + T V IS+ + + + L++ P+ AG D+E
Sbjct: 112 NEGDVLVIPPGVPY--WTYNTGDEPVVAISLLDTSNFNNQLDQ-NPRVFYLAGNPDIEHP 168
Query: 232 RGLP 235
+
Sbjct: 169 ETMQ 172
>d1o5ua_ b.82.1.8 (A:) Hypothetical protein TM1112 {Thermotoga
maritima [TaxId: 2336]}
Length = 88
Score = 24.7 bits (54), Expect = 6.7
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 168 TVTLEPGDLLYLPRGY 183
+E GDL+ P+G
Sbjct: 56 KYVIEKGDLVTFPKGL 71
>d2d40a1 b.82.1.23 (A:35-342) Gentisate 1,2-dioxygenase {Escherichia
coli [TaxId: 562]}
Length = 308
Score = 25.9 bits (56), Expect = 7.6
Identities = 5/26 (19%), Positives = 9/26 (34%)
Query: 168 TVTLEPGDLLYLPRGYIHQASTVTNE 193
+ GD + P+ H +E
Sbjct: 94 RTPMNEGDFILTPQWRWHDHGNPGDE 119
Score = 25.9 bits (56), Expect = 8.3
Identities = 4/32 (12%), Positives = 10/32 (31%)
Query: 168 TVTLEPGDLLYLPRGYIHQASTVTNEHSLHVT 199
T + D+ +P + T + +
Sbjct: 261 TFSFSAKDIFVVPTWHGVSFQTTQDSVLFSFS 292
>d1ytda2 d.41.2.1 (A:1-119) Nicotinate phosphoribosyltransferase
Ta1145 {Thermoplasma acidophilum [TaxId: 2303]}
Length = 119
Score = 25.1 bits (55), Expect = 7.7
Identities = 5/41 (12%), Positives = 11/41 (26%), Gaps = 4/41 (9%)
Query: 210 DLLEKAMPKALQAAG----ATDLEFRRGLPIGYLRYAGLAR 246
D+ + A+ G ++ + GL
Sbjct: 19 DVYFERTISAIGDKCNDLRVAMEATVSGPLDTWINFTGLDE 59
>d1sefa_ b.82.1.11 (A:) Hypothetical protein EF2996 {Enterococcus
faecalis [TaxId: 1351]}
Length = 250
Score = 25.4 bits (55), Expect = 9.4
Identities = 8/35 (22%), Positives = 12/35 (34%)
Query: 168 TVTLEPGDLLYLPRGYIHQASTVTNEHSLHVTISV 202
+E GD +++ A V E L S
Sbjct: 208 WYPVEKGDYIFMSAYVPQAAYAVGREEPLMYVYSK 242
>d1zx5a1 b.82.1.3 (A:1-299) Putative mannosephosphate isomerase
AF0035 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 299
Score = 25.4 bits (55), Expect = 9.9
Identities = 10/71 (14%), Positives = 22/71 (30%), Gaps = 3/71 (4%)
Query: 115 QGFAPHYDDIEAFILQLEGKKKWKVYLPRMVDEYLPRYSSPNFSQEEIGTPILTVTLEPG 174
A+++ +GK ++E + +F + + + T P
Sbjct: 108 SLGEAEGGVESAWLVFNKGKAYAGFKEDVKIEELEEKLKEEDFDFKTL---LNTFETTPY 164
Query: 175 DLLYLPRGYIH 185
D + G H
Sbjct: 165 DTFVIRPGIPH 175
>d3elga1 d.98.2.1 (A:20-146) Putative periplasmic protein BVU2443
{Bacteroides vulgatus [TaxId: 821]}
Length = 127
Score = 24.8 bits (54), Expect = 9.9
Identities = 5/38 (13%), Positives = 15/38 (39%), Gaps = 2/38 (5%)
Query: 14 QKNYYNNLITSKKIDDILRDNVIEFKKNIDITLYEDGQ 51
+ NY + KI+ + + + +++ + G
Sbjct: 86 KANYNGHKTV--KIERNRKGYELTLENGLEVDFDQFGG 121
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.137 0.404
Gapped
Lambda K H
0.267 0.0551 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,331,666
Number of extensions: 65992
Number of successful extensions: 234
Number of sequences better than 10.0: 1
Number of HSP's gapped: 230
Number of HSP's successfully gapped: 43
Length of query: 339
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 253
Effective length of database: 1,226,816
Effective search space: 310384448
Effective search space used: 310384448
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.6 bits)