BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13798
(614 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2OSZ|A Chain A, Structure Of Nup58/45 Suggests Flexible Nuclear Pore
Diameter By Intermolecular Sliding
pdb|2OSZ|B Chain B, Structure Of Nup58/45 Suggests Flexible Nuclear Pore
Diameter By Intermolecular Sliding
pdb|2OSZ|C Chain C, Structure Of Nup58/45 Suggests Flexible Nuclear Pore
Diameter By Intermolecular Sliding
pdb|2OSZ|D Chain D, Structure Of Nup58/45 Suggests Flexible Nuclear Pore
Diameter By Intermolecular Sliding
pdb|3T98|B Chain B, Molecular Architecture Of The Transport Channel Of The
Nuclear Pore Complex: Nup54NUP58
Length = 93
Score = 36.2 bits (82), Expect = 0.050, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 28/45 (62%)
Query: 41 ELYQTMRRVHDAVVSVAGSLQSTQPEVQYLKERHLQLRQTYLKDS 85
+L M++++ V++A LQS V+ LKE++L R+ +L D+
Sbjct: 48 DLSMAMQKIYQTFVALAAQLQSIHENVKVLKEQYLSYRKMFLGDA 92
>pdb|2B20|A Chain A, Crystal Structure Of Enterochelin Esterase From Shigella
Flexneri Enterochelin Esterase
pdb|3C87|A Chain A, Crystal Structure Of The Enterobactin Esterase Fes From
Shigella Flexneri In The Presence Of Enterobactin
pdb|3C87|B Chain B, Crystal Structure Of The Enterobactin Esterase Fes From
Shigella Flexneri In The Presence Of Enterobactin
pdb|3C8H|A Chain A, Crystal Structure Of The Enterobactin Esterase Fes From
Shigella Flexneri In The Presence Of 2,3-Di-Hydroxy-N-
Benzoyl-Serine
pdb|3C8H|B Chain B, Crystal Structure Of The Enterobactin Esterase Fes From
Shigella Flexneri In The Presence Of 2,3-Di-Hydroxy-N-
Benzoyl-Serine
pdb|3C8H|C Chain C, Crystal Structure Of The Enterobactin Esterase Fes From
Shigella Flexneri In The Presence Of 2,3-Di-Hydroxy-N-
Benzoyl-Serine
pdb|3C8H|D Chain D, Crystal Structure Of The Enterobactin Esterase Fes From
Shigella Flexneri In The Presence Of 2,3-Di-Hydroxy-N-
Benzoyl-Serine
Length = 403
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 28 FYTHIWFKSPLSTELYQTMRRVHDAVVSVAGSLQSTQPE 66
F W++ P +E Y T++RV + V Q++QP+
Sbjct: 31 FEVTFWWRDPQGSEEYSTIKRVWVYITGVTDHHQNSQPQ 69
>pdb|3C8D|A Chain A, Crystal Structure Of The Enterobactin Esterase Fes From
Shigella Flexneri In The Presence Of 2,3-Di-Hydroxy-N-
Benzoyl-Glycine
pdb|3C8D|B Chain B, Crystal Structure Of The Enterobactin Esterase Fes From
Shigella Flexneri In The Presence Of 2,3-Di-Hydroxy-N-
Benzoyl-Glycine
pdb|3C8D|C Chain C, Crystal Structure Of The Enterobactin Esterase Fes From
Shigella Flexneri In The Presence Of 2,3-Di-Hydroxy-N-
Benzoyl-Glycine
pdb|3C8D|D Chain D, Crystal Structure Of The Enterobactin Esterase Fes From
Shigella Flexneri In The Presence Of 2,3-Di-Hydroxy-N-
Benzoyl-Glycine
Length = 403
Score = 28.9 bits (63), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 28 FYTHIWFKSPLSTELYQTMRRVHDAVVSVAGSLQSTQPE 66
F W++ P +E Y T++RV + V Q++QP+
Sbjct: 31 FEVTFWWRDPQGSEEYSTIKRVWVYITGVTDHHQNSQPQ 69
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.129 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,311,504
Number of Sequences: 62578
Number of extensions: 499472
Number of successful extensions: 1107
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1103
Number of HSP's gapped (non-prelim): 21
length of query: 614
length of database: 14,973,337
effective HSP length: 105
effective length of query: 509
effective length of database: 8,402,647
effective search space: 4276947323
effective search space used: 4276947323
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)