BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13798
(614 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9BVL2|NUPL1_HUMAN Nucleoporin p58/p45 OS=Homo sapiens GN=NUPL1 PE=1 SV=1
Length = 599
Score = 57.8 bits (138), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 41 ELYQTMRRVHDAVVSVAGSLQSTQPEVQYLKERHLQLRQTYLKDSTNVFDVERGGRDT-- 98
+L M++++ V++A LQS V+ LKE++L R+ +L D+ +VF+ R
Sbjct: 384 DLSMAMQKIYQTFVALAAQLQSIHENVKVLKEQYLGYRKMFLGDAVDVFETRRAEAKKWQ 443
Query: 99 KLPRDVEGPSPFS 111
PR GP+PFS
Sbjct: 444 NTPRVTTGPTPFS 456
>sp|Q8R332|NUPL1_MOUSE Nucleoporin p58/p45 OS=Mus musculus GN=Nupl1 PE=1 SV=1
Length = 587
Score = 57.0 bits (136), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Query: 41 ELYQTMRRVHDAVVSVAGSLQSTQPEVQYLKERHLQLRQTYLKDSTNVFDVER--GGRDT 98
+L M++++ V++A LQS V+ LKE++L R+ +L D+ +VF+ R +
Sbjct: 372 DLSMAMQKIYQTFVALAAQLQSIHENVKVLKEQYLGYRKMFLGDAVDVFEARRTEAKKWQ 431
Query: 99 KLPRDVEGPSPFS 111
PR GP+PFS
Sbjct: 432 NAPRVTTGPTPFS 444
>sp|P70581|NUPL1_RAT Nucleoporin p58/p45 OS=Rattus norvegicus GN=Nupl1 PE=1 SV=1
Length = 585
Score = 55.8 bits (133), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Query: 41 ELYQTMRRVHDAVVSVAGSLQSTQPEVQYLKERHLQLRQTYLKDSTNVFDVER--GGRDT 98
+L M++++ V++A LQS V+ LKE++L R+ +L D+ +VF+ R +
Sbjct: 370 DLSMAMQKIYQTFVALAAQLQSIHENVKVLKEQYLSYRKMFLGDAGDVFEARRTEAKKWQ 429
Query: 99 KLPRDVEGPSPFS 111
PR GP+PFS
Sbjct: 430 NAPRVTTGPTPFS 442
>sp|Q9VDV3|NUPL1_DROME Probable nucleoporin Nup58 OS=Drosophila melanogaster GN=Nup58 PE=2
SV=1
Length = 546
Score = 53.1 bits (126), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 45/73 (61%), Gaps = 2/73 (2%)
Query: 41 ELYQTMRRVHDAVVSVAGSLQSTQPEVQYLKERHLQLRQTYLKDSTNVFD-VERGGRDTK 99
+L + R+++++ +S+AG L V+ KE +L LR+ L+D+TNVF+ ++ T
Sbjct: 451 DLKRGFRQLNESFISLAGRLHEVHQRVEEHKEHYLNLRRYRLRDTTNVFERIDNPPLPTV 510
Query: 100 LPRDV-EGPSPFS 111
P+ + GP+PFS
Sbjct: 511 EPQRISSGPTPFS 523
Score = 34.3 bits (77), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 42/83 (50%), Gaps = 22/83 (26%)
Query: 483 PLFGAPATTAQTGFSFGTPAATSQPSVGFGAAATTQSVGFGAPATSQSVTFGAQPASQPS 542
P FGAPA T+ +FG PAAT+ FGA A+TQ+ FGAPA + P+
Sbjct: 135 PAFGAPAATS----AFGAPAATT----AFGAPASTQASAFGAPAPAVGTV-------APT 179
Query: 543 VGFGAPATTQTGLSFGAPATSQP 565
F PAT+ AP T+ P
Sbjct: 180 FSFATPATS-------APTTAPP 195
>sp|P14907|NSP1_YEAST Nucleoporin NSP1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=NSP1 PE=1 SV=1
Length = 823
Score = 35.8 bits (81), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 124/400 (31%), Positives = 167/400 (41%), Gaps = 115/400 (28%)
Query: 278 TPAFGSP-----AFGS----TNTFGTPTTQQST-GFGGFGTSTFGSQPTQQSGLSFNSPS 327
TPAFGS AFG+ +N FG+ + +T G GTS FGS QQ+ +
Sbjct: 61 TPAFGSNNTGNTAFGNSNPTSNVFGSNNSTTNTFGSNSAGTSLFGSSSAQQT-----KSN 115
Query: 328 TTQSGLTFGAPSGGLNFGTPTTQATSA-------FGTPTQSTGLSFGNFNS-----GLTF 375
T G TFG+ S F T T+ FG +T S GN N+ G T
Sbjct: 116 GTAGGNTFGSSSL---FNNSTNSNTTKPAFGGLNFGGGNNTTPSSTGNANTSNNLFGATA 172
Query: 376 GAPSGGLNFGTPTTQATSAFGTPTQSTGLSFGPPFLFRSNETTATLDACVQSFGSTTPAQ 435
A +FG T P + P F F S S G+ T AQ
Sbjct: 173 NANKPAFSFGATTNDDKKT--EPDK-------PAFSFNS------------SVGNKTDAQ 211
Query: 436 GFGSTAQTGLSFGT-----PSATQASG-GFSFGGGTAPQTGGLNFGTPTSTQQPLFGAPA 489
TG SFG+ + +A+ SFG G+A G N P QP P
Sbjct: 212 A----PTTGFSFGSQLGGNKTVNEAAKPSLSFGSGSA----GAN---PAGASQP---EPT 257
Query: 490 TT--AQTGFSFGTPAATSQ-----PSVGFGAAATTQSVGFGAPATSQ-SVTFGAQP---- 537
T A+ SFGT + ++ PS FGA + G ATS+ + +FGA+P
Sbjct: 258 TNEPAKPALSFGTATSDNKTTNTTPSFSFGAKSDENKAG----ATSKPAFSFGAKPEEKK 313
Query: 538 ---ASQPSVGFGAPA-------TTQTGLSFGA-PA------TSQPALSFGSSATGQAAG- 579
+S+P+ FGA + T + SFGA PA TS+PA SFG+ + + G
Sbjct: 314 DDNSSKPAFSFGAKSNEDKQDGTAKPAFSFGAKPAEKNNNETSKPAFSFGAKSDEKKDGD 373
Query: 580 -----FSFG-----SSAPASSQPSLSFGAAIWIFSNRSSS 609
FSFG + A A+S+P+ SFGA + +SS
Sbjct: 374 ASKPAFSFGAKPDENKASATSKPAFSFGAKPEEKKDDNSS 413
>sp|P40477|NU159_YEAST Nucleoporin NUP159 OS=Saccharomyces cerevisiae (strain ATCC 204508
/ S288c) GN=NUP159 PE=1 SV=1
Length = 1460
Score = 33.9 bits (76), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 54/115 (46%), Gaps = 31/115 (26%)
Query: 220 PAFGAGTTT-----SGQGFGGFGTGTATFGSTNTS-----TGGLFGS---------GGTT 260
P+FG+G ++ SG FG GT +FGS N+S +G FG G +
Sbjct: 532 PSFGSGKSSVESPASGSAFGKPSFGTPSFGSGNSSVEPPASGSAFGKPSFGTPSFGSGNS 591
Query: 261 TAQPGFGSSAFGTPSAPTPAFGSPAFGSTNT---FGTPTTQQSTGFGGFGTSTFG 312
+A+P SAFG PS T AFG+ + TN+ FG FG+S+F
Sbjct: 592 SAEPPASGSAFGKPSFGTSAFGTASSNETNSGSIFGK---------AAFGSSSFA 637
>sp|Q96WV6|YHU2_SCHPO Uncharacterized threonine-rich GPI-anchored glycoprotein PJ4664.02
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBPJ4664.02 PE=4 SV=1
Length = 3971
Score = 33.5 bits (75), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 84/288 (29%), Positives = 117/288 (40%), Gaps = 45/288 (15%)
Query: 316 TQQSGLSFNSPSTTQSGLTFGAP---SGGLNFGTPTTQATSAFGTPTQSTGLSFGNFNSG 372
T S L+ ++P T+ + L P S LN TP T +T T T T + N ++
Sbjct: 853 TSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTPITSST-VVNTSTPITSSTVVNSSTP 911
Query: 373 LTFGAPSGGLNFGTPTTQATSAFG--TP-TQSTGLSFGPPFLFRS--NETTATLDACVQS 427
+T S LN TP T + S TP T STGL+ P S N +T + V
Sbjct: 912 ITS---STALNTSTPITSS-SVLNSSTPITSSTGLNTSTPITSSSVLNSSTPITSSTV-- 965
Query: 428 FGSTTPAQGFGSTAQTGLSFGTPSATQASGGFSFGGGTAPQTGG--LNFGTPTSTQQPLF 485
S+TP T+ T L+ TP + S + P T LN TP ++ L
Sbjct: 966 LNSSTPI-----TSSTALNTSTPITSS-----SVLNSSTPITSSSVLNTSTPITSSSVLN 1015
Query: 486 GAPATTAQTGFSFGTPAATSQPSVGFGAAATTQS--VGFGAPATSQSVTFGAQPASQPSV 543
+ A T+ T + TP +S SV + T S V P TS +V V
Sbjct: 1016 SSTAITSSTALNTSTPITSS--SVLNSSTPITSSTVVNTSTPITSSTV-----------V 1062
Query: 544 GFGAPATTQTGLSFGAPATSQPALSFGSSATGQAAGFSFGSSAPASSQ 591
P T+ T L+ P TS L +S+T + SS P +S
Sbjct: 1063 NSSTPITSSTALNTSTPITSSSVL---NSSTPITSSTVLNSSTPITSS 1107
>sp|Q10168|NSP1_SCHPO Nucleoporin nsp1 OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=nsp1 PE=1 SV=1
Length = 598
Score = 32.7 bits (73), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 60/127 (47%), Gaps = 25/127 (19%)
Query: 437 FGSTAQTGLSFGTPSATQASGGFSFGGGTAPQTG--GLNFGTPTSTQQPLFGAPATTAQT 494
FG A TG + P A+ S T P TG G +FG P S + +TTA +
Sbjct: 173 FGKPAATGTTSNAPPASSTS--------TTPATGSGGFSFGKPASLGSTNNASTSTTANS 224
Query: 495 GFSFGTPAATSQPSVGFGAAATTQSVGFGAPATSQSVTFGAQPASQPSVGFGAPATTQTG 554
GFSFG PA TS P G+ T P++S + T ++PA+ S AP TG
Sbjct: 225 GFSFGKPATTSAP----GSNTTV------TPSSSITGTNDSKPAA--SNTGSAPT---TG 269
Query: 555 LSFGAPA 561
SFG PA
Sbjct: 270 FSFGKPA 276
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.129 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 263,237,979
Number of Sequences: 539616
Number of extensions: 13310108
Number of successful extensions: 54046
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 1048
Number of HSP's that attempted gapping in prelim test: 34105
Number of HSP's gapped (non-prelim): 7270
length of query: 614
length of database: 191,569,459
effective HSP length: 124
effective length of query: 490
effective length of database: 124,657,075
effective search space: 61081966750
effective search space used: 61081966750
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 64 (29.3 bits)