Query psy13798
Match_columns 614
No_of_seqs 111 out of 118
Neff 3.0
Searched_HMMs 46136
Date Fri Aug 16 20:44:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13798.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13798hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3091|consensus 96.6 0.032 6.9E-07 61.8 13.5 12 229-240 18-29 (508)
2 KOG3091|consensus 96.1 0.073 1.6E-06 59.2 12.8 56 116-179 2-57 (508)
3 PF13634 Nucleoporin_FG: Nucle 92.4 1.1 2.5E-05 40.5 9.3 6 425-430 23-28 (113)
4 PF13634 Nucleoporin_FG: Nucle 82.3 14 0.0003 33.6 9.7 10 421-430 35-44 (113)
5 PF14131 DUF4298: Domain of un 74.1 4.7 0.0001 35.5 4.1 38 44-81 3-40 (90)
6 PF00429 TLV_coat: ENV polypro 68.6 4.9 0.00011 45.6 3.7 27 63-90 493-519 (561)
7 KOG0774|consensus 67.7 9.9 0.00021 40.4 5.4 56 34-89 144-203 (334)
8 PF14829 GPAT_N: Glycerol-3-ph 66.5 10 0.00022 33.6 4.4 44 34-84 6-49 (77)
9 TIGR03837 efp_adjacent_2 conse 65.1 9.3 0.0002 41.8 4.8 65 21-85 276-360 (371)
10 PF09006 Surfac_D-trimer: Lung 60.1 8.8 0.00019 31.1 2.6 28 55-82 3-30 (46)
11 PF00675 Peptidase_M16: Insuli 57.8 10 0.00022 33.8 3.0 69 13-87 55-125 (149)
12 PRK14140 heat shock protein Gr 57.1 8.7 0.00019 38.4 2.7 35 52-86 38-79 (191)
13 PF02321 OEP: Outer membrane e 56.9 25 0.00054 30.5 5.2 52 40-91 104-155 (188)
14 COG2916 Hns DNA-binding protei 56.6 21 0.00045 34.1 4.9 50 42-91 20-69 (128)
15 PRK14160 heat shock protein Gr 56.4 15 0.00034 37.3 4.3 48 40-87 57-104 (211)
16 PF14620 YPEB: YpeB sporulatio 55.0 13 0.00028 40.1 3.8 49 35-83 109-157 (361)
17 PRK09894 diguanylate cyclase; 54.7 16 0.00035 35.7 4.1 20 59-78 109-128 (296)
18 PRK14163 heat shock protein Gr 54.6 10 0.00022 38.7 2.7 46 44-89 40-85 (214)
19 PRK14143 heat shock protein Gr 54.5 14 0.00031 38.0 3.8 50 38-87 61-110 (238)
20 PF07106 TBPIP: Tat binding pr 52.6 29 0.00063 32.9 5.3 49 35-83 107-163 (169)
21 PF08031 BBE: Berberine and be 51.7 11 0.00025 29.3 2.1 19 64-91 24-42 (47)
22 COG0277 GlcD FAD/FMN-containin 51.2 25 0.00054 36.9 5.0 74 20-94 369-455 (459)
23 PRK14156 heat shock protein Gr 49.4 9.4 0.0002 37.8 1.6 31 54-84 30-67 (177)
24 TIGR01678 FAD_lactone_ox sugar 49.0 28 0.00061 38.2 5.2 64 26-91 362-437 (438)
25 PF06148 COG2: COG (conserved 48.5 10 0.00022 34.7 1.5 45 38-82 42-86 (133)
26 PF12491 ApoB100_C: Apolipopro 48.1 47 0.001 28.2 5.1 22 40-61 7-28 (58)
27 PF07889 DUF1664: Protein of u 46.9 36 0.00078 32.3 4.9 56 28-84 19-75 (126)
28 cd00219 ToxGAP GTPase-activati 46.7 15 0.00033 34.8 2.4 35 16-57 80-114 (120)
29 COG1344 FlgL Flagellin and rel 46.4 28 0.0006 36.9 4.6 39 40-78 81-125 (360)
30 PF08653 DASH_Dam1: DASH compl 46.3 36 0.00079 28.6 4.3 36 38-77 6-41 (58)
31 PF01025 GrpE: GrpE; InterPro 44.8 17 0.00036 33.9 2.4 51 40-90 21-72 (165)
32 PF13990 YjcZ: YjcZ-like prote 42.2 33 0.00071 36.4 4.2 52 13-81 55-106 (270)
33 PF08838 DUF1811: Protein of u 42.0 44 0.00096 31.0 4.5 49 37-88 7-55 (102)
34 cd00193 t_SNARE Soluble NSF (N 41.6 70 0.0015 24.2 5.0 37 40-76 9-45 (60)
35 PF10093 DUF2331: Uncharacteri 41.3 38 0.00082 37.3 4.7 65 21-85 278-362 (374)
36 cd04920 ACT_AKiii-DAPDC_2 ACT 41.1 23 0.00051 28.4 2.4 15 40-54 48-62 (63)
37 PRK14145 heat shock protein Gr 40.4 28 0.0006 35.2 3.3 44 46-89 47-90 (196)
38 PF08826 DMPK_coil: DMPK coile 39.7 76 0.0016 26.9 5.2 41 40-80 14-54 (61)
39 PF07160 DUF1395: Protein of u 39.1 54 0.0012 33.7 5.2 34 40-73 18-51 (243)
40 PRK00888 ftsB cell division pr 38.7 66 0.0014 29.2 5.1 61 30-90 17-86 (105)
41 PF06013 WXG100: Proteins of 1 38.6 82 0.0018 24.8 5.1 50 16-76 34-83 (86)
42 PF07028 DUF1319: Protein of u 38.6 60 0.0013 31.1 5.0 43 42-84 44-86 (126)
43 KOG2574|consensus 37.6 14 0.00029 41.6 0.7 43 24-68 275-317 (492)
44 PF04761 Phage_Treg: Lactococc 37.6 24 0.00052 29.4 1.9 23 64-86 16-38 (57)
45 PF10929 DUF2811: Protein of u 36.5 54 0.0012 27.7 3.8 43 34-76 2-54 (57)
46 PRK14158 heat shock protein Gr 36.4 36 0.00078 34.2 3.4 48 39-86 35-82 (194)
47 PF06721 DUF1204: Protein of u 36.1 29 0.00063 35.5 2.6 55 37-91 33-91 (228)
48 TIGR02889 spore_YpeB germinati 36.0 30 0.00065 38.5 3.0 48 35-82 119-166 (435)
49 COG3890 ERG8 Phosphomevalonate 35.7 44 0.00095 36.2 4.0 43 32-81 215-257 (337)
50 PF11020 DUF2610: Domain of un 35.6 37 0.0008 30.5 2.9 31 5-51 29-59 (82)
51 TIGR00293 prefoldin, archaeal 34.9 1E+02 0.0022 27.7 5.7 52 22-81 72-123 (126)
52 PF08650 DASH_Dad4: DASH compl 34.7 49 0.0011 29.0 3.4 39 43-81 17-58 (72)
53 PRK12722 transcriptional activ 33.8 27 0.00058 35.1 2.0 43 48-90 14-65 (187)
54 PF13060 DUF3921: Protein of u 33.6 1.1E+02 0.0023 25.7 5.0 43 41-83 5-57 (58)
55 PRK14139 heat shock protein Gr 33.6 45 0.00098 33.3 3.5 39 49-87 37-75 (185)
56 PF04156 IncA: IncA protein; 33.4 76 0.0017 30.2 4.9 38 41-78 85-122 (191)
57 TIGR01679 bact_FAD_ox FAD-link 33.1 88 0.0019 34.0 5.9 63 26-92 341-412 (419)
58 smart00595 MADF subfamily of S 32.7 50 0.0011 27.5 3.2 34 48-81 25-62 (89)
59 PF06120 Phage_HK97_TLTM: Tail 32.6 79 0.0017 33.9 5.3 50 35-84 65-114 (301)
60 PRK13662 hypothetical protein; 32.5 74 0.0016 31.7 4.8 43 38-80 133-177 (177)
61 PRK15375 pathogenicity island 32.5 35 0.00075 39.2 2.8 46 16-72 239-284 (535)
62 PRK14161 heat shock protein Gr 32.4 52 0.0011 32.6 3.7 31 58-88 26-63 (178)
63 cd01091 CDC68-like Related to 32.3 89 0.0019 31.6 5.4 46 36-81 116-167 (243)
64 PF06013 WXG100: Proteins of 1 32.2 81 0.0017 24.9 4.2 42 40-81 21-74 (86)
65 COG0011 Uncharacterized conser 32.2 62 0.0013 29.8 3.9 35 39-73 50-98 (100)
66 PRK11240 penicillin-binding pr 32.0 36 0.00078 40.2 2.9 29 46-77 133-161 (772)
67 PF00249 Myb_DNA-binding: Myb- 31.7 32 0.00068 26.2 1.7 36 42-78 12-48 (48)
68 PHA02503 putative transcriptio 31.7 36 0.00079 28.3 2.1 23 64-86 16-38 (57)
69 PF14769 CLAMP: Flagellar C1a 31.6 1E+02 0.0023 27.2 5.1 56 38-94 13-69 (101)
70 KOG0948|consensus 31.4 46 0.001 40.2 3.6 63 25-91 800-871 (1041)
71 PF12277 DUF3618: Protein of u 31.2 99 0.0021 24.6 4.4 33 40-73 10-42 (49)
72 PF14772 NYD-SP28: Sperm tail 31.2 1.1E+02 0.0023 27.2 5.1 50 35-84 49-102 (104)
73 KOG2057|consensus 31.1 67 0.0014 35.6 4.5 62 16-79 45-112 (499)
74 PRK10642 proline/glycine betai 30.9 22 0.00047 37.9 0.9 15 37-51 445-459 (490)
75 PRK14151 heat shock protein Gr 30.6 49 0.0011 32.7 3.2 34 53-86 29-62 (176)
76 PLN00175 aminotransferase fami 30.6 66 0.0014 34.2 4.4 44 38-81 273-325 (413)
77 PF06160 EzrA: Septation ring 30.5 70 0.0015 36.3 4.8 41 47-87 118-158 (560)
78 TIGR02894 DNA_bind_RsfA transc 30.4 83 0.0018 31.3 4.7 36 42-77 109-144 (161)
79 COG0732 HsdS Restriction endon 30.4 72 0.0016 31.8 4.3 69 16-84 112-190 (391)
80 PRK14154 heat shock protein Gr 30.0 51 0.0011 33.6 3.3 30 56-85 64-93 (208)
81 PF14854 LURAP: Leucine rich a 30.0 59 0.0013 31.1 3.4 32 41-72 26-57 (121)
82 smart00397 t_SNARE Helical reg 30.0 1.3E+02 0.0029 23.0 4.9 22 41-62 16-37 (66)
83 PF13327 T3SS_LEE_assoc: Type 29.9 23 0.00051 34.9 0.9 74 3-81 8-99 (163)
84 PF10224 DUF2205: Predicted co 29.7 1.2E+02 0.0026 27.0 5.0 46 45-90 24-71 (80)
85 cd04917 ACT_AKiii-LysC-EC_2 AC 29.2 48 0.001 26.1 2.4 15 40-54 49-63 (64)
86 PLN00107 FAD-dependent oxidore 29.2 90 0.002 33.0 4.9 74 12-93 110-198 (257)
87 PRK02944 OxaA-like protein pre 29.2 58 0.0013 33.5 3.6 19 57-75 85-103 (255)
88 KOG1819|consensus 29.0 57 0.0012 37.8 3.7 41 35-75 632-690 (990)
89 cd04922 ACT_AKi-HSDH-ThrA_2 AC 29.0 50 0.0011 25.4 2.4 24 30-54 42-65 (66)
90 COG0612 PqqL Predicted Zn-depe 28.8 57 0.0012 34.6 3.5 60 26-90 95-154 (438)
91 PF02096 60KD_IMP: 60Kd inner 28.7 50 0.0011 31.7 2.8 26 58-83 30-55 (198)
92 PRK12804 flagellin; Provisiona 28.6 81 0.0018 32.7 4.5 52 40-91 81-139 (301)
93 PF14712 Snapin_Pallidin: Snap 28.6 84 0.0018 26.9 3.9 33 40-72 17-49 (92)
94 PF12998 ING: Inhibitor of gro 28.5 73 0.0016 27.3 3.6 38 36-77 11-48 (105)
95 PRK03947 prefoldin subunit alp 28.4 93 0.002 28.6 4.4 52 22-81 80-131 (140)
96 PHA03385 IX capsid protein IX, 28.4 57 0.0012 31.5 3.1 26 48-73 104-129 (135)
97 COG0576 GrpE Molecular chapero 28.3 42 0.00091 33.4 2.3 8 76-83 68-75 (193)
98 PRK02793 phi X174 lysis protei 28.1 1.2E+02 0.0025 26.1 4.6 36 43-78 21-56 (72)
99 PRK14157 heat shock protein Gr 28.0 52 0.0011 34.0 3.0 32 56-87 89-120 (227)
100 PRK13824 replication initiatio 27.9 69 0.0015 35.3 4.1 38 41-79 140-177 (404)
101 PF05679 CHGN: Chondroitin N-a 27.8 1.3E+02 0.0028 33.8 6.1 71 7-80 10-105 (499)
102 PF04030 ALO: D-arabinono-1,4- 27.3 1.1E+02 0.0024 30.4 5.1 48 42-91 197-253 (259)
103 TIGR03575 selen_PSTK_euk L-ser 27.3 90 0.0019 33.7 4.7 44 41-84 257-300 (340)
104 PRK08175 aminotransferase; Val 27.3 1E+02 0.0022 32.2 4.9 45 38-82 251-304 (395)
105 PF05739 SNARE: SNARE domain; 27.1 1.1E+02 0.0025 24.0 4.2 22 41-62 8-29 (63)
106 PRK09276 LL-diaminopimelate am 27.0 1E+02 0.0022 31.8 4.9 45 38-82 253-306 (385)
107 PF03792 PBC: PBC domain; Int 26.9 1E+02 0.0022 31.5 4.7 42 34-75 148-190 (191)
108 PF07429 Glyco_transf_56: 4-al 26.9 84 0.0018 34.7 4.4 73 12-88 89-169 (360)
109 PF01153 Glypican: Glypican; 26.6 87 0.0019 35.9 4.7 46 41-88 106-151 (557)
110 PRK13248 phycoerythrobilin:fer 26.6 1.1E+02 0.0023 32.3 5.0 54 32-87 165-230 (253)
111 PHA02046 hypothetical protein 26.5 56 0.0012 30.2 2.6 31 56-86 6-51 (99)
112 PLN02703 beta-fructofuranosida 26.5 17 0.00037 41.9 -0.8 44 43-86 134-177 (618)
113 TIGR03592 yidC_oxa1_cterm memb 26.2 60 0.0013 31.3 2.9 19 58-76 29-47 (181)
114 cd03012 TlpA_like_DipZ_like Tl 25.9 86 0.0019 27.5 3.6 42 11-54 6-53 (126)
115 PF14244 UBN2_3: gag-polypepti 25.9 47 0.001 30.7 2.0 36 46-81 88-125 (152)
116 cd04918 ACT_AK1-AT_2 ACT domai 25.9 60 0.0013 26.0 2.4 15 40-54 50-64 (65)
117 TIGR01677 pln_FAD_oxido plant- 25.8 70 0.0015 36.6 3.8 79 7-93 410-504 (557)
118 PRK14155 heat shock protein Gr 25.7 61 0.0013 32.9 3.0 26 59-84 28-53 (208)
119 PRK00846 hypothetical protein; 25.5 1.4E+02 0.003 26.5 4.7 43 44-86 27-69 (77)
120 PRK12805 flagellin; Provisiona 25.5 1.3E+02 0.0027 31.2 5.2 52 40-91 81-138 (287)
121 PRK13777 transcriptional regul 25.4 61 0.0013 32.1 2.8 52 40-91 114-165 (185)
122 PF12780 AAA_8: P-loop contain 25.4 51 0.0011 34.1 2.4 33 56-88 224-257 (268)
123 PF08217 DUF1712: Fungal domai 25.3 75 0.0016 36.8 3.9 44 41-84 98-141 (604)
124 PF15186 TEX13: Testis-express 25.2 1.4E+02 0.003 29.6 5.1 45 38-83 100-149 (152)
125 PRK12584 flagellin A; Reviewed 25.2 95 0.0021 35.2 4.6 40 40-79 83-128 (510)
126 PRK14162 heat shock protein Gr 25.0 63 0.0014 32.5 2.9 35 51-85 46-80 (194)
127 PRK07682 hypothetical protein; 24.9 1.1E+02 0.0024 31.5 4.7 44 38-81 240-292 (378)
128 TIGR01765 tspaseT_teng_N trans 24.9 1.8E+02 0.004 24.3 5.2 43 40-82 14-60 (73)
129 PRK12803 flagellin; Provisiona 24.8 1E+02 0.0022 33.2 4.6 51 40-90 81-137 (335)
130 PRK11534 DNA-binding transcrip 24.8 48 0.001 32.0 1.9 68 12-82 148-218 (224)
131 TIGR03036 trp_2_3_diox tryptop 24.6 44 0.00095 35.2 1.8 72 3-82 20-103 (264)
132 PF00831 Ribosomal_L29: Riboso 24.5 56 0.0012 26.7 2.0 22 60-81 9-30 (58)
133 COG5043 MRS6 Vacuolar protein 24.4 12 0.00027 48.0 -2.5 42 3-44 335-376 (2552)
134 PRK05771 V-type ATP synthase s 24.4 1E+02 0.0022 35.3 4.7 41 40-80 89-129 (646)
135 cd04915 ACT_AK-Ectoine_2 ACT d 24.4 65 0.0014 26.2 2.4 31 22-54 35-65 (66)
136 PRK14142 heat shock protein Gr 24.1 52 0.0011 34.0 2.1 10 75-84 64-73 (223)
137 PF13801 Metal_resist: Heavy-m 24.1 2.4E+02 0.0051 23.7 5.8 46 36-87 40-85 (125)
138 PF10504 DUF2452: Protein of u 24.1 1.3E+02 0.0029 29.9 4.8 44 39-82 29-76 (159)
139 PF15169 DUF4564: Domain of un 24.0 32 0.0007 34.7 0.7 70 6-77 37-122 (187)
140 PF09749 HVSL: Uncharacterised 23.9 1.3E+02 0.0028 30.3 4.8 32 27-58 39-70 (239)
141 KOG3062|consensus 23.8 66 0.0014 34.2 2.8 32 45-77 243-274 (281)
142 cd01764 Urm1 Urm1-like ubuitin 23.8 54 0.0012 29.0 2.0 24 62-85 30-53 (94)
143 PF01297 TroA: Periplasmic sol 23.6 85 0.0019 31.0 3.5 42 30-74 92-141 (256)
144 KOG3123|consensus 23.6 20 0.00043 37.4 -0.9 68 23-96 141-224 (272)
145 PF06580 His_kinase: Histidine 23.5 1.5E+02 0.0032 25.3 4.4 49 39-88 29-80 (82)
146 PF02374 ArsA_ATPase: Anion-tr 23.4 1.4E+02 0.003 31.3 5.1 60 26-86 124-206 (305)
147 COG5484 Uncharacterized conser 23.4 51 0.0011 35.1 2.0 59 30-93 98-159 (279)
148 PRK14148 heat shock protein Gr 23.3 94 0.002 31.4 3.7 37 50-86 39-82 (195)
149 PF05739 SNARE: SNARE domain; 23.3 2.3E+02 0.0049 22.3 5.2 30 44-73 4-33 (63)
150 PF00617 RasGEF: RasGEF domain 23.2 80 0.0017 29.2 3.0 11 72-82 137-147 (188)
151 PF10360 DUF2433: Protein of u 23.0 74 0.0016 30.6 2.8 52 53-112 21-75 (132)
152 TIGR00012 L29 ribosomal protei 22.9 62 0.0013 26.2 2.0 19 60-78 7-25 (55)
153 PF04959 ARS2: Arsenite-resist 22.8 47 0.001 33.9 1.5 20 9-28 73-92 (214)
154 PRK14150 heat shock protein Gr 22.7 54 0.0012 32.8 1.9 8 76-83 70-77 (193)
155 PRK12807 flagellin; Provisiona 22.7 1.3E+02 0.0028 31.1 4.6 52 40-91 81-138 (287)
156 PRK12802 flagellin; Provisiona 22.6 1.3E+02 0.0027 31.0 4.6 52 40-91 83-140 (282)
157 TIGR02791 VirB5 P-type DNA tra 22.6 84 0.0018 31.4 3.3 31 51-81 34-64 (220)
158 PF07007 DUF1311: Protein of u 22.6 2.1E+02 0.0046 23.2 5.1 48 42-89 20-70 (95)
159 PF04420 CHD5: CHD5-like prote 22.5 63 0.0014 31.1 2.3 11 10-20 21-31 (161)
160 PF04156 IncA: IncA protein; 22.5 1.5E+02 0.0032 28.3 4.8 40 42-81 107-146 (191)
161 TIGR02209 ftsL_broad cell divi 22.4 1.4E+02 0.0031 24.9 4.1 38 51-88 24-63 (85)
162 PHA03260 Capsid triplex subuni 22.3 1E+02 0.0022 33.4 3.9 42 40-81 211-254 (339)
163 cd04937 ACT_AKi-DapG-BS_2 ACT 22.1 74 0.0016 25.3 2.3 14 40-53 49-62 (64)
164 PF09177 Syntaxin-6_N: Syntaxi 22.1 1.6E+02 0.0034 25.9 4.4 47 38-84 33-88 (97)
165 PF12776 Myb_DNA-bind_3: Myb/S 22.1 1.4E+02 0.0031 25.0 4.1 42 37-79 29-70 (96)
166 smart00397 t_SNARE Helical reg 22.0 1.7E+02 0.0037 22.4 4.2 35 40-74 8-42 (66)
167 PLN03006 carbonate dehydratase 22.0 50 0.0011 35.4 1.6 28 64-91 79-106 (301)
168 PF08172 CASP_C: CASP C termin 21.9 1.4E+02 0.0031 31.0 4.8 27 40-66 96-122 (248)
169 PRK07366 succinyldiaminopimela 21.9 1.4E+02 0.0031 30.9 4.8 44 38-81 253-305 (388)
170 PRK00784 cobyric acid synthase 21.8 1.1E+02 0.0023 34.0 4.2 50 29-80 428-484 (488)
171 PF13682 CZB: Chemoreceptor zi 21.8 76 0.0016 24.9 2.3 49 10-58 3-65 (70)
172 PRK13717 conjugal transfer pro 21.6 17 0.00037 34.8 -1.7 74 7-83 13-89 (128)
173 PF08223 PaaX_C: PaaX-like pro 21.6 85 0.0018 29.9 2.9 41 45-85 93-142 (172)
174 CHL00154 rpl29 ribosomal prote 21.6 66 0.0014 27.4 2.0 19 60-78 14-32 (67)
175 PF03039 IL12: Interleukin-12 21.5 77 0.0017 32.8 2.8 28 60-87 124-151 (219)
176 PF15066 CAGE1: Cancer-associa 21.5 1.3E+02 0.0028 34.6 4.6 44 40-83 386-436 (527)
177 TIGR02744 TrbI_Ftype type-F co 21.4 17 0.00037 33.9 -1.7 72 13-84 6-77 (112)
178 cd01019 ZnuA Zinc binding prot 21.4 1.5E+02 0.0032 30.4 4.8 49 28-79 119-175 (286)
179 cd01145 TroA_c Periplasmic bin 21.4 2E+02 0.0042 28.0 5.4 25 29-56 107-131 (203)
180 PRK10904 DNA adenine methylase 21.3 57 0.0012 33.4 1.8 53 30-83 48-100 (271)
181 PRK12806 flagellin; Provisiona 21.3 1.2E+02 0.0027 34.2 4.5 39 40-78 83-127 (475)
182 KOG2796|consensus 21.3 89 0.0019 34.0 3.2 41 40-82 29-79 (366)
183 PF01544 CorA: CorA-like Mg2+ 21.2 1.6E+02 0.0035 28.8 4.9 48 35-82 183-230 (292)
184 cd04170 EF-G_bact Elongation f 21.2 2E+02 0.0043 28.7 5.6 44 35-84 183-238 (268)
185 PF05524 PEP-utilisers_N: PEP- 21.1 54 0.0012 29.2 1.4 47 39-85 30-80 (123)
186 PF07477 Glyco_hydro_67C: Glyc 21.1 16 0.00036 37.6 -2.0 71 8-82 135-207 (225)
187 PRK00056 mtgA monofunctional b 21.1 87 0.0019 32.4 3.1 29 46-77 132-160 (236)
188 PF14712 Snapin_Pallidin: Snap 21.0 1.8E+02 0.0038 24.9 4.5 29 49-77 62-90 (92)
189 KOG2223|consensus 20.9 1.1E+02 0.0023 35.2 3.9 92 11-103 191-305 (586)
190 PF14182 YgaB: YgaB-like prote 20.8 99 0.0021 27.7 2.9 43 40-87 27-69 (79)
191 PRK12717 flgL flagellar hook-a 20.8 1.3E+02 0.0029 34.1 4.7 39 40-78 81-125 (523)
192 PF01920 Prefoldin_2: Prefoldi 20.8 2.2E+02 0.0047 24.3 5.0 49 40-90 1-49 (106)
193 PRK03837 transcriptional regul 20.7 56 0.0012 31.7 1.5 68 11-82 167-234 (241)
194 PRK06348 aspartate aminotransf 20.6 1.6E+02 0.0035 30.7 4.9 43 39-81 249-300 (384)
195 PF00042 Globin: Globin plant 20.6 36 0.00078 28.7 0.2 12 22-33 17-28 (110)
196 PLN02567 alpha,alpha-trehalase 20.6 1.4E+02 0.003 34.3 4.8 64 18-82 299-369 (554)
197 PF12872 OST-HTH: OST-HTH/LOTU 20.5 1.5E+02 0.0032 23.9 3.7 51 41-91 2-63 (74)
198 PF08700 Vps51: Vps51/Vps67; 20.4 2.2E+02 0.0047 23.8 4.8 39 41-79 41-79 (87)
199 PRK08636 aspartate aminotransf 20.4 1.6E+02 0.0035 30.9 4.9 45 38-82 262-315 (403)
200 PRK12860 transcriptional activ 20.3 65 0.0014 32.6 1.9 43 48-90 14-65 (189)
201 KOG2189|consensus 20.2 99 0.0022 37.3 3.6 71 43-113 91-165 (829)
202 PRK14549 50S ribosomal protein 20.2 74 0.0016 27.1 2.0 25 60-84 14-39 (69)
203 cd00890 Prefoldin Prefoldin is 20.2 1.5E+02 0.0032 26.2 4.0 34 39-72 1-34 (129)
204 PF02371 Transposase_20: Trans 20.1 86 0.0019 26.8 2.4 22 4-25 23-44 (87)
205 cd04919 ACT_AK-Hom3_2 ACT doma 20.1 91 0.002 24.1 2.4 23 31-54 43-65 (66)
206 PF10545 MADF_DNA_bdg: Alcohol 20.1 1.5E+02 0.0032 23.8 3.6 34 48-82 24-57 (85)
207 COG3092 Uncharacterized protei 20.1 1.6E+02 0.0034 28.9 4.3 61 18-84 82-148 (149)
208 PRK11414 colanic acid/biofilm 20.0 48 0.001 32.0 1.0 72 11-84 147-218 (221)
209 PRK00736 hypothetical protein; 20.0 1.8E+02 0.004 24.6 4.3 35 43-77 18-52 (68)
No 1
>KOG3091|consensus
Probab=96.60 E-value=0.032 Score=61.85 Aligned_cols=12 Identities=50% Similarity=0.847 Sum_probs=5.3
Q ss_pred CCcccccCCCCC
Q psy13798 229 SGQGFGGFGTGT 240 (614)
Q Consensus 229 ~g~~fgGFGs~~ 240 (614)
..+++++||.++
T Consensus 18 ~~~~~~~~gt~t 29 (508)
T KOG3091|consen 18 ASGGQGNFGTST 29 (508)
T ss_pred cccccCCCCCcc
Confidence 333444444444
No 2
>KOG3091|consensus
Probab=96.10 E-value=0.073 Score=59.16 Aligned_cols=56 Identities=43% Similarity=0.720 Sum_probs=35.1
Q ss_pred CCCCCCCCCcCCCCCCCCcccccccCCcccccCCCCCCCCCCCCCCCCCccccccccccccCCc
Q psy13798 116 FGSTATQPAFGAGTTTSGQGFGGFGSATARLCNSIGSPAFGSTNTFGTPTTQQSTGFGGFGTST 179 (614)
Q Consensus 116 fgs~~~~~~fg~~~~t~g~~fggfg~~~~~~~~s~~~~~fg~~~~fgs~~~~q~tg~g~fg~~~ 179 (614)
||+......|-++.+-..+++|+||.++.++ +.+--+||+.|.+|+-++ ++||.+.
T Consensus 2 FG~~~~~s~~~~~st~~~~~~~~~gt~t~ts--a~~g~~fgs~p~~~taTt------~~fG~~~ 57 (508)
T KOG3091|consen 2 FGASGSTSGFAAGSTGASGGQGNFGTSTTTS--ASGGGAFGSQPTTGTATT------GLFGANQ 57 (508)
T ss_pred CCCCCCcCCCCCccCCcccccCCCCCccccc--cccccccccCCCCCCccc------ccccccc
Confidence 6666666667434445566777888888774 334447788887776544 4566555
No 3
>PF13634 Nucleoporin_FG: Nucleoporin FG repeat region
Probab=92.36 E-value=1.1 Score=40.49 Aligned_cols=6 Identities=50% Similarity=0.589 Sum_probs=3.0
Q ss_pred cccCCC
Q psy13798 425 VQSFGS 430 (614)
Q Consensus 425 GFsFGa 430 (614)
+.+||.
T Consensus 23 ~~lFG~ 28 (113)
T PF13634_consen 23 GSLFGS 28 (113)
T ss_pred CCCCCC
Confidence 445554
No 4
>PF13634 Nucleoporin_FG: Nucleoporin FG repeat region
Probab=82.27 E-value=14 Score=33.57 Aligned_cols=10 Identities=30% Similarity=0.325 Sum_probs=5.3
Q ss_pred cCCCcccCCC
Q psy13798 421 LDACVQSFGS 430 (614)
Q Consensus 421 ~a~gGFsFGa 430 (614)
....+.+||.
T Consensus 35 ~~~~~~LFG~ 44 (113)
T PF13634_consen 35 STSSGSLFGS 44 (113)
T ss_pred CCCCCccCCC
Confidence 3345566664
No 5
>PF14131 DUF4298: Domain of unknown function (DUF4298)
Probab=74.08 E-value=4.7 Score=35.47 Aligned_cols=38 Identities=18% Similarity=0.228 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHhhhccchhhHHHHHHHHHHhhhhhhh
Q psy13798 44 QTMRRVHDAVVSVAGSLQSTQPEVQYLKERHLQLRQTY 81 (614)
Q Consensus 44 ~~m~klhetfValAg~lq~~H~~V~~~KeqyL~~Rr~~ 81 (614)
.-|+++++.++.|=.+|+.+.++.|...+.|..||+||
T Consensus 3 ~eme~~y~~~~~~l~~le~~l~~~~~~~~~~~~L~~YY 40 (90)
T PF14131_consen 3 QEMEKIYNEWCELLEELEEALEKWQEAQPDYRKLRDYY 40 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35899999999999999999999999999999999999
No 6
>PF00429 TLV_coat: ENV polyprotein (coat polyprotein); InterPro: IPR018154 Enveloped viruses such as Human immunodeficiency virus 1, influenza virus, and Ebola virus sp. express a surface glycoprotein that mediates both cell attachment and fusion of viral and cellular membranes. The ENV polyprotein (coat polyprotein) usually contains two coat proteins which differ depending on the source. The structure of a number of the ENV polyprotein domains have been determined: The crystal structure of an extraviral segment of the Moloney murine leukemia virus (MoMuLV) transmembrane (TM) subunit has been determined to 1.7-A resolution. This segment contains a trimeric coiled coil, with a hydrophobic cluster at its base and a strand that packs in an antiparallel orientation against the coiled coil. This structure serves as a model for a wide range of viral fusion proteins; key residues in this structure are conserved among C- and D-type retroviruses and the filovirus ebola []. An essential step in retrovirus infection is the binding of the virus to its receptor on a target cell. The structure of the receptor-binding domain of the envelope glycoprotein from Friend murine leukemia virus (F-MuLV) has been determined determined to 2.0-A resolution. The core of the domain is an antiparallel beta sandwich, with two interstrand loops forming a helical subdomain atop the sandwich. The residues in the helical region, but not in the beta sandwich, are highly variable among mammalian C-type retroviruses with distinct tropisms, indicating that the helical subdomain determines the receptor specificity of the virus []. ; PDB: 1LCS_B 1MOF_A 1XNL_A 2XZ3_A 1AOL_A 1Y4M_C.
Probab=68.61 E-value=4.9 Score=45.56 Aligned_cols=27 Identities=26% Similarity=0.409 Sum_probs=8.4
Q ss_pred hhHHHHHHHHHHhhhhhhhhcCCCcccc
Q psy13798 63 TQPEVQYLKERHLQLRQTYLKDSTNVFD 90 (614)
Q Consensus 63 ~H~~V~~~KeqyL~~Rr~~l~D~tdvFe 90 (614)
|+++||.+||+ |+.||..++|..+.||
T Consensus 493 v~~~i~~l~e~-~~~~~~~~~~~~~w~~ 519 (561)
T PF00429_consen 493 VRDSIKKLRER-LEKRKRESNDWQGWFE 519 (561)
T ss_dssp --HHHHHHTT----HHHHHHT-------
T ss_pred hhHHHHHHHHH-HHhhhhhccccccccc
Confidence 44555555555 4555555555555544
No 7
>KOG0774|consensus
Probab=67.68 E-value=9.9 Score=40.43 Aligned_cols=56 Identities=21% Similarity=0.342 Sum_probs=46.9
Q ss_pred ecCCChHHHHHHHHHHHHHHHHhhhcc-chhhHHHHHHHHHHhhhhh---hhhcCCCccc
Q psy13798 34 FKSPLSTELYQTMRRVHDAVVSVAGSL-QSTQPEVQYLKERHLQLRQ---TYLKDSTNVF 89 (614)
Q Consensus 34 ~~~~~pqdL~~~m~klhetfValAg~l-q~~H~~V~~~KeqyL~~Rr---~~l~D~tdvF 89 (614)
+.--.|||+.+-|+.||..|-.+--+| |+.-|+|-+||.+||.-|| -|-|..|||.
T Consensus 144 ~RPi~~ke~e~m~~~i~~kF~~iq~~lkqstce~vmiLr~r~ldarRKRRNFsK~aTeiL 203 (334)
T KOG0774|consen 144 TRPIMPKEIERMVQIISKKFSHIQMQLKQSTCEAVMILRSRFLDARRKRRNFSKQATEIL 203 (334)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHH
Confidence 456689999999999999999998887 6889999999999998765 4556666664
No 8
>PF14829 GPAT_N: Glycerol-3-phosphate acyltransferase N-terminal; PDB: 1IUQ_A 1K30_A.
Probab=66.53 E-value=10 Score=33.59 Aligned_cols=44 Identities=16% Similarity=0.248 Sum_probs=32.5
Q ss_pred ecCCChHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHhhhhhhhhcC
Q psy13798 34 FKSPLSTELYQTMRRVHDAVVSVAGSLQSTQPEVQYLKERHLQLRQTYLKD 84 (614)
Q Consensus 34 ~~~~~pqdL~~~m~klhetfValAg~lq~~H~~V~~~KeqyL~~Rr~~l~D 84 (614)
.+...-|||...+||.-| ||||-. ....-.+|-|.|||+.+|..
T Consensus 6 l~~~~Eqells~Ikkeve-----aGkLP~--~va~gmeelY~NYk~AVl~S 49 (77)
T PF14829_consen 6 LDARSEQELLSGIKKEVE-----AGKLPA--NVAAGMEELYQNYKNAVLQS 49 (77)
T ss_dssp GG--SHHHHHHHHHHHHH-----TTSS-H--HHHHHHHHHHHHHHHHHHHT
T ss_pred cccccHHHHHHHHHHHHH-----cCCCCh--hHHHHHHHHHHHHHHHHHhC
Confidence 345567999999999866 688754 33456889999999999864
No 9
>TIGR03837 efp_adjacent_2 conserved hypothetical protein, PP_1857 family. This model describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=65.05 E-value=9.3 Score=41.81 Aligned_cols=65 Identities=14% Similarity=0.259 Sum_probs=55.3
Q ss_pred cccccceeeEEEe-----------------ecCCChHHHHHHHHHHHHHHHH---hhhccchhhHHHHHHHHHHhhhhhh
Q psy13798 21 SVWTGSRFYTHIW-----------------FKSPLSTELYQTMRRVHDAVVS---VAGSLQSTQPEVQYLKERHLQLRQT 80 (614)
Q Consensus 21 ~~~~~~~~~~~~~-----------------~~~~~pqdL~~~m~klhetfVa---lAg~lq~~H~~V~~~KeqyL~~Rr~ 80 (614)
-.|.|..|.-||| |..++|.|+..+|+++|..+-. +....+.+.+..+.++++...+|++
T Consensus 276 AqWAgkPfvWhIYPQeddaHl~KL~AFL~~y~~~l~~~~~~al~~~~~awN~~~~~~~~W~~l~~~~~~l~~~a~~w~~~ 355 (371)
T TIGR03837 276 AQWAGKPFVWHIYPQEEDAHLAKLEAFLDLYCAGLAPEAAAALRAFWRAWNGGGALSADWPALRAALPEWQQHAQAWAAR 355 (371)
T ss_pred HHHcCCCceeecccCchhhHHHHHHHHHHHHhccCChHHHHHHHHHHHHHhCCCchhhhHHHHHHhhHHHHHHHHHHHHH
Confidence 4699999999997 5678999999999999998862 3446777888889999999999999
Q ss_pred hhcCC
Q psy13798 81 YLKDS 85 (614)
Q Consensus 81 ~l~D~ 85 (614)
+++++
T Consensus 356 l~~~~ 360 (371)
T TIGR03837 356 LAAQP 360 (371)
T ss_pred HhhCC
Confidence 99874
No 10
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=60.08 E-value=8.8 Score=31.09 Aligned_cols=28 Identities=21% Similarity=0.280 Sum_probs=23.4
Q ss_pred HhhhccchhhHHHHHHHHHHhhhhhhhh
Q psy13798 55 SVAGSLQSTQPEVQYLKERHLQLRQTYL 82 (614)
Q Consensus 55 alAg~lq~~H~~V~~~KeqyL~~Rr~~l 82 (614)
||=.|+-.++++|+.|+..+..|+|+.|
T Consensus 3 aLrqQv~aL~~qv~~Lq~~fs~yKKa~l 30 (46)
T PF09006_consen 3 ALRQQVEALQGQVQRLQAAFSQYKKAEL 30 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777888999999999999999875
No 11
>PF00675 Peptidase_M16: Insulinase (Peptidase family M16) This is family M16 in the peptidase classification. ; InterPro: IPR011765 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. The majority of the sequences in this entry are metallopeptidases and non-peptidase homologs belong to MEROPS peptidase family M16 (clan ME), subfamilies M16A, M16B and M16C; they include: Insulinase, insulin-degrading enzyme (3.4.24.56 from EC) Mitochondrial processing peptidase alpha subunit, (Alpha-MPP, 3.4.24.64 from EC) Pitrlysin, Protease III precursor (3.4.24.55 from EC) Nardilysin, (3.4.24.61 from EC) Ubiquinol-cytochrome C reductase complex core protein I,mitochondrial precursor (1.10.2.2 from EC) Coenzyme PQQ synthesis protein F (3.4.99 from EC) These proteins do not share many regions of sequence similarity; the most noticeable is in the N-terminal section. This region includes a conserved histidine followed, two residues later by a glutamate and another histidine. In pitrilysin, it has been shown [] that this H-x-x-E-H motif is involved in enzymatic activity; the two histidines bind zinc and the glutamate is necessary for catalytic activity. The proteins classified as non-peptidase homologues either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. ; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 3P7L_A 3P7O_A 3TUV_A 3GO9_A 1BE3_B 1PP9_B 2A06_B 1SQB_B 1SQP_B 1L0N_B ....
Probab=57.83 E-value=10 Score=33.82 Aligned_cols=69 Identities=23% Similarity=0.155 Sum_probs=45.0
Q ss_pred hHHHHhhccc--cccceeeEEEeecCCChHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHhhhhhhhhcCCCc
Q psy13798 13 KWLWKLCGSV--WTGSRFYTHIWFKSPLSTELYQTMRRVHDAVVSVAGSLQSTQPEVQYLKERHLQLRQTYLKDSTN 87 (614)
Q Consensus 13 ~~~~~~~~~~--~~~~~~~~~~~~~~~~pqdL~~~m~klhetfValAg~lq~~H~~V~~~KeqyL~~Rr~~l~D~td 87 (614)
++|.++-+++ ++ ++-|+.+.++. ++.||..+|..|.|.+..- ++.+ +.|+..|++-+.-++.+..|+.+
T Consensus 55 ~~l~~~G~~~~~~t-~~d~t~~~~~~-~~~~~~~~l~~l~~~~~~P--~f~~--~~~~~~r~~~~~ei~~~~~~~~~ 125 (149)
T PF00675_consen 55 EELESLGASFNAST-SRDSTSYSASV-LSEDLEKALELLADMLFNP--SFDE--EEFEREREQILQEIEEIKENPQE 125 (149)
T ss_dssp HHHHHTTCEEEEEE-ESSEEEEEEEE-EGGGHHHHHHHHHHHHHSB--GGCH--HHHHHHHHHHHHHHHHHTTHHHH
T ss_pred HHhhhhccccceEe-cccceEEEEEE-ecccchhHHHHHHHHHhCC--CCCH--HHHHHHHHHHHHHHHHHHCCHHH
Confidence 4555543332 22 35567777755 4888999999999988765 3333 66777777777777766666633
No 12
>PRK14140 heat shock protein GrpE; Provisional
Probab=57.12 E-value=8.7 Score=38.41 Aligned_cols=35 Identities=11% Similarity=0.180 Sum_probs=18.6
Q ss_pred HHHHhhhccchhhHHHHHHHHHH-------hhhhhhhhcCCC
Q psy13798 52 AVVSVAGSLQSTQPEVQYLKERH-------LQLRQTYLKDST 86 (614)
Q Consensus 52 tfValAg~lq~~H~~V~~~Keqy-------L~~Rr~~l~D~t 86 (614)
-+-.|-.+|..+-++++.+|++| -||||+.-||--
T Consensus 38 ~~~~l~~~i~~l~~ei~elkd~~lR~~Ae~eN~rkR~~rE~~ 79 (191)
T PRK14140 38 LLDEEQAKIAELEAKLDELEERYLRLQADFENYKRRIQKENE 79 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444455555544 478888766543
No 13
>PF02321 OEP: Outer membrane efflux protein; InterPro: IPR003423 The OEP family (Outer membrane efflux protein) form trimeric channels that allow export of a variety of substrates in Gram negative bacteria. Each member of this family is composed of two repeats. The trimeric channel is composed of a 12 stranded all beta sheet barrel that spans the outer membrane, and a long all helical barrel that spans the periplasm. Examples include the Escherichia coli TolC outer membrane protein, which is required for proper expression of outer membrane protein genes; the Rhizobium nodulation protein; and the Pseudomonas FusA protein, which is involved in resistance to fusaric acid.; GO: 0005215 transporter activity, 0006810 transport; PDB: 3PIK_A 1YC9_A 3D5K_C 1WP1_B 2XMN_C 2WMZ_B 1EK9_B 2VDD_C 1TQQ_A 2VDE_B ....
Probab=56.93 E-value=25 Score=30.45 Aligned_cols=52 Identities=13% Similarity=0.188 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHhhhhhhhhcCCCccccc
Q psy13798 40 TELYQTMRRVHDAVVSVAGSLQSTQPEVQYLKERHLQLRQTYLKDSTNVFDV 91 (614)
Q Consensus 40 qdL~~~m~klhetfValAg~lq~~H~~V~~~KeqyL~~Rr~~l~D~tdvFe~ 91 (614)
+||..-++++|..++.+-.++.-..+.|+.+||.|-..++.|-..-.++.|.
T Consensus 104 ~~l~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~d~ 155 (188)
T PF02321_consen 104 RELRLEVKQAYYQLLQAQEQLEIAEEQLELAKEQLEIAEKRYEAGLISELDL 155 (188)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS-HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHH
Confidence 4666677777777888888888889999999999988888888777777664
No 14
>COG2916 Hns DNA-binding protein H-NS [General function prediction only]
Probab=56.59 E-value=21 Score=34.14 Aligned_cols=50 Identities=14% Similarity=0.179 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHhhhhhhhhcCCCccccc
Q psy13798 42 LYQTMRRVHDAVVSVAGSLQSTQPEVQYLKERHLQLRQTYLKDSTNVFDV 91 (614)
Q Consensus 42 L~~~m~klhetfValAg~lq~~H~~V~~~KeqyL~~Rr~~l~D~tdvFe~ 91 (614)
|...++++|+-.....-..+.+-+.|++.++.|=.||..+.+|.++.=|-
T Consensus 20 lee~~ek~eq~~~~r~~e~~~~~~~i~e~~~~~~~~~e~~~k~~i~~~el 69 (128)
T COG2916 20 LEEMLEKEEQVVQERQEEEAAAIAEIEERQEKYGTIRELLIKDGITPEEL 69 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 34445555655566667777788889999999999999999999987653
No 15
>PRK14160 heat shock protein GrpE; Provisional
Probab=56.39 E-value=15 Score=37.26 Aligned_cols=48 Identities=10% Similarity=0.120 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHhhhhhhhhcCCCc
Q psy13798 40 TELYQTMRRVHDAVVSVAGSLQSTQPEVQYLKERHLQLRQTYLKDSTN 87 (614)
Q Consensus 40 qdL~~~m~klhetfValAg~lq~~H~~V~~~KeqyL~~Rr~~l~D~td 87 (614)
.+|..-+..|.+.+..|-.++..++.++..++-.|=||||+.-||--+
T Consensus 57 ~~l~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~kE~e~ 104 (211)
T PRK14160 57 EELKDENNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRTAKEKEG 104 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666777777888888888888888888888888999987665433
No 16
>PF14620 YPEB: YpeB sporulation
Probab=55.03 E-value=13 Score=40.07 Aligned_cols=49 Identities=20% Similarity=0.300 Sum_probs=43.4
Q ss_pred cCCChHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHhhhhhhhhc
Q psy13798 35 KSPLSTELYQTMRRVHDAVVSVAGSLQSTQPEVQYLKERHLQLRQTYLK 83 (614)
Q Consensus 35 ~~~~pqdL~~~m~klhetfValAg~lq~~H~~V~~~KeqyL~~Rr~~l~ 83 (614)
+.||..|=...|++||+--.-|..+||.|+.+|..-+=+++.+|+..-.
T Consensus 109 g~~Lt~~e~~tL~~L~~~s~~l~~~L~~~~~~v~~~~l~w~d~~~~~~~ 157 (361)
T PF14620_consen 109 GEPLTDEEYKTLKELYEQSGELNKELQDVQNKVLSGNLRWMDVEKALAS 157 (361)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHhhhh
Confidence 6789999999999999999999999999999998877778887777554
No 17
>PRK09894 diguanylate cyclase; Provisional
Probab=54.70 E-value=16 Score=35.66 Aligned_cols=20 Identities=25% Similarity=0.175 Sum_probs=11.5
Q ss_pred ccchhhHHHHHHHHHHhhhh
Q psy13798 59 SLQSTQPEVQYLKERHLQLR 78 (614)
Q Consensus 59 ~lq~~H~~V~~~KeqyL~~R 78 (614)
+|+.+...|+.++++.++++
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~ 128 (296)
T PRK09894 109 GLLSFTAALTDYKIYLLTIR 128 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55555666666666655543
No 18
>PRK14163 heat shock protein GrpE; Provisional
Probab=54.63 E-value=10 Score=38.70 Aligned_cols=46 Identities=15% Similarity=0.165 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHhhhccchhhHHHHHHHHHHhhhhhhhhcCCCccc
Q psy13798 44 QTMRRVHDAVVSVAGSLQSTQPEVQYLKERHLQLRQTYLKDSTNVF 89 (614)
Q Consensus 44 ~~m~klhetfValAg~lq~~H~~V~~~KeqyL~~Rr~~l~D~tdvF 89 (614)
....+|.+.+..|-.+|..++.++..++-.|-||||+..||--++.
T Consensus 40 ~~~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~rkR~~kE~e~~~ 85 (214)
T PRK14163 40 AATAGLTAQLDQVRTALGERTADLQRLQAEYQNYRRRVERDRVTVK 85 (214)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3346677777888888888888888888888899998877655443
No 19
>PRK14143 heat shock protein GrpE; Provisional
Probab=54.47 E-value=14 Score=38.04 Aligned_cols=50 Identities=6% Similarity=0.141 Sum_probs=34.6
Q ss_pred ChHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHhhhhhhhhcCCCc
Q psy13798 38 LSTELYQTMRRVHDAVVSVAGSLQSTQPEVQYLKERHLQLRQTYLKDSTN 87 (614)
Q Consensus 38 ~pqdL~~~m~klhetfValAg~lq~~H~~V~~~KeqyL~~Rr~~l~D~td 87 (614)
...|+...+.+|.+.+..|-.+|..+..++..++-.|-||||+.-||--+
T Consensus 61 ~~~~~~~~~~~l~~el~~l~~e~~elkd~~lR~~AdfeN~RKR~~kE~e~ 110 (238)
T PRK14143 61 TAADNAARLAQLEQELESLKQELEELNSQYMRIAADFDNFRKRTSREQED 110 (238)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666667777666677777777777777777777899988776544
No 20
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=52.64 E-value=29 Score=32.91 Aligned_cols=49 Identities=16% Similarity=0.328 Sum_probs=38.1
Q ss_pred cCCChHHHHHHHHHHHHHHHHhhhccchhhH--------HHHHHHHHHhhhhhhhhc
Q psy13798 35 KSPLSTELYQTMRRVHDAVVSVAGSLQSTQP--------EVQYLKERHLQLRQTYLK 83 (614)
Q Consensus 35 ~~~~pqdL~~~m~klhetfValAg~lq~~H~--------~V~~~KeqyL~~Rr~~l~ 83 (614)
+.|+-.||...+.+|-+-.-.|-.||+.+++ .++.+++.|..||+.+.+
T Consensus 107 ~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~~~~~vs~ee~~~~~~~~~~~~k~w~k 163 (169)
T PF07106_consen 107 SEPTNEELREEIEELEEEIEELEEKLEKLRSGSKPVSPEEKEKLEKEYKKWRKEWKK 163 (169)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4677788888888888888888888887764 677788888888776643
No 21
>PF08031 BBE: Berberine and berberine like ; InterPro: IPR012951 This domain is found in the berberine bridge and berberine bridge-like enzymes, which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyse the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine [].; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 2IPI_A 2Y3S_A 2Y3R_D 2Y08_B 2Y4G_A 3D2H_A 3FW9_A 3FW8_A 3FWA_A 3D2J_A ....
Probab=51.75 E-value=11 Score=29.28 Aligned_cols=19 Identities=26% Similarity=0.441 Sum_probs=13.1
Q ss_pred hHHHHHHHHHHhhhhhhhhcCCCccccc
Q psy13798 64 QPEVQYLKERHLQLRQTYLKDSTNVFDV 91 (614)
Q Consensus 64 H~~V~~~KeqyL~~Rr~~l~D~tdvFe~ 91 (614)
+++++.+|.+| ||.|||..
T Consensus 24 ~~rL~~iK~~y---------DP~n~F~~ 42 (47)
T PF08031_consen 24 YDRLRAIKRKY---------DPDNVFRF 42 (47)
T ss_dssp HHHHHHHHHHH----------TT-TS-S
T ss_pred HHHHHHHHHHh---------CccceeCC
Confidence 67788888777 99999984
No 22
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion]
Probab=51.16 E-value=25 Score=36.94 Aligned_cols=74 Identities=14% Similarity=0.107 Sum_probs=38.8
Q ss_pred ccccccceeeEEEeecCCCh----HHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHhhhhh------hhhc---CCC
Q psy13798 20 GSVWTGSRFYTHIWFKSPLS----TELYQTMRRVHDAVVSVAGSLQSTQPEVQYLKERHLQLRQ------TYLK---DST 86 (614)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~p----qdL~~~m~klhetfValAg~lq~~H~~V~~~KeqyL~~Rr------~~l~---D~t 86 (614)
+..+.|. .+..+|+..... ++....++.+++..+.+-|++..-|..-..-+|.+..|+. .-+| ||.
T Consensus 369 ~~~~dg~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~gG~~~~~h~~g~~~~~~~~~~~~~~~~~~~~~k~~~DP~ 447 (459)
T COG0277 369 GHAGDGN-LHLNILYDVGDEAEELARAEALNEAIEALAVELGGSISGEHGIGRTKAEFLELEPGEAWALLRAIKRAFDPN 447 (459)
T ss_pred cccCCCc-ceeeeccCCCccHHHHHHHHHHHHHHHHHHHHhCCeeEEecccchhhHHHHHHHHhHHHHHHHHHHHhcCCC
Confidence 3344444 444455554432 2244556666777777777776555443333333333331 2233 699
Q ss_pred cccccccC
Q psy13798 87 NVFDVERG 94 (614)
Q Consensus 87 dvFe~~~~ 94 (614)
+||...+.
T Consensus 448 ~i~npg~~ 455 (459)
T COG0277 448 GIFNPGKL 455 (459)
T ss_pred CCCCCCcc
Confidence 99986544
No 23
>PRK14156 heat shock protein GrpE; Provisional
Probab=49.41 E-value=9.4 Score=37.76 Aligned_cols=31 Identities=6% Similarity=0.168 Sum_probs=19.8
Q ss_pred HHhhhccchhhHHHHHHHHHHh-------hhhhhhhcC
Q psy13798 54 VSVAGSLQSTQPEVQYLKERHL-------QLRQTYLKD 84 (614)
Q Consensus 54 ValAg~lq~~H~~V~~~KeqyL-------~~Rr~~l~D 84 (614)
|+|-.+|+.+-++++.+|++|| ||||+.-||
T Consensus 30 ~~~~~~l~~l~~e~~elkd~~lR~~AEfeN~rKR~~rE 67 (177)
T PRK14156 30 TPEKSELELANERADEFENKYLRAHAEMQNIQRRANEE 67 (177)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666665 677765544
No 24
>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases. This model represents a family of at least two different sugar 1,4 lactone oxidases, both involved in synthesizing ascorbic acid or a derivative. These include L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae. Members are proposed to have the cofactor FAD covalently bound at a site specified by Prosite motif PS00862; OX2_COVAL_FAD; 1.
Probab=49.05 E-value=28 Score=38.18 Aligned_cols=64 Identities=13% Similarity=0.214 Sum_probs=43.8
Q ss_pred ceeeEEEeecCCC--hHHHHHHHHHHHHHHHHhhhccc--hhhH--HHHHHH------HHHhhhhhhhhcCCCccccc
Q psy13798 26 SRFYTHIWFKSPL--STELYQTMRRVHDAVVSVAGSLQ--STQP--EVQYLK------ERHLQLRQTYLKDSTNVFDV 91 (614)
Q Consensus 26 ~~~~~~~~~~~~~--pqdL~~~m~klhetfValAg~lq--~~H~--~V~~~K------eqyL~~Rr~~l~D~tdvFe~ 91 (614)
..-|.|||...+. ..+...-++.+.+.+....||=| .+|. .-+.++ ++||.+||.+ ||.+||.+
T Consensus 362 ds~~i~~~~y~~~~~~~~~~~~f~~~E~i~~~~gGRPHWgK~h~~~~~~~l~~~YP~~~~F~~vr~~~--DP~g~F~N 437 (438)
T TIGR01678 362 DTCYINAIMYRPFGKDVPRLDYFLAYETIMKKFGGKPHWAKAHNVCKQKDFEEMYPTLHKFCDIRKKL--DPTGVFLN 437 (438)
T ss_pred ceEEEEEEEccCCCCCCCHHHHHHHHHHHHHHcCCCCCchhcccccCHHHHHHHCcCHHHHHHHHHhh--CcccccCC
Confidence 3557788776653 22334668888888888998866 4554 222333 4789999987 99999975
No 25
>PF06148 COG2: COG (conserved oligomeric Golgi) complex component, COG2; InterPro: IPR024602 This entry represents the uncharacterised N-terminal domain of subunit 2 of the COG complex. The COG complex comprises eight proteins COG1-8 and plays critical roles in Golgi structure and function [].; PDB: 2JQQ_A.
Probab=48.46 E-value=10 Score=34.65 Aligned_cols=45 Identities=20% Similarity=0.248 Sum_probs=9.9
Q ss_pred ChHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHhhhhhhhh
Q psy13798 38 LSTELYQTMRRVHDAVVSVAGSLQSTQPEVQYLKERHLQLRQTYL 82 (614)
Q Consensus 38 ~pqdL~~~m~klhetfValAg~lq~~H~~V~~~KeqyL~~Rr~~l 82 (614)
+-+||-.-+.+=|+.||.|...|..+.++|+.+|..-.++|+.+.
T Consensus 42 L~~~Li~lIN~dY~dFv~Ls~~L~g~~~~i~~l~~~L~~~~~~v~ 86 (133)
T PF06148_consen 42 LKNELIELINDDYADFVSLSTNLVGMDEKIEELRKPLSQFREEVE 86 (133)
T ss_dssp --------------------------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHH
Confidence 445555555566778888888888888888888888888887654
No 26
>PF12491 ApoB100_C: Apolipoprotein B100 C terminal; InterPro: IPR022176 This domain family is found in eukaryotes, and is approximately 60 amino acids in length. There are two conserved sequence motifs: QLS and LIDL. ApoB100 has an essential role in the assembly and secretion of triglyceride-rich lipoproteins and lipids transport.
Probab=48.05 E-value=47 Score=28.19 Aligned_cols=22 Identities=9% Similarity=0.156 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHhhhccc
Q psy13798 40 TELYQTMRRVHDAVVSVAGSLQ 61 (614)
Q Consensus 40 qdL~~~m~klhetfValAg~lq 61 (614)
||.+.-+...||.|||.+.||-
T Consensus 7 qe~sdqls~~yEK~IaeskrLI 28 (58)
T PF12491_consen 7 QEFSDQLSDYYEKFIAESKRLI 28 (58)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999983
No 27
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=46.89 E-value=36 Score=32.28 Aligned_cols=56 Identities=29% Similarity=0.391 Sum_probs=33.4
Q ss_pred eeEEEeecCCChHHHHHHHHH-HHHHHHHhhhccchhhHHHHHHHHHHhhhhhhhhcC
Q psy13798 28 FYTHIWFKSPLSTELYQTMRR-VHDAVVSVAGSLQSTQPEVQYLKERHLQLRQTYLKD 84 (614)
Q Consensus 28 ~~~~~~~~~~~pqdL~~~m~k-lhetfValAg~lq~~H~~V~~~KeqyL~~Rr~~l~D 84 (614)
=|-.||+|---=-||+-+=|| |-++.-.|..+|..|.+.|+..|+| |.-|=.-|.|
T Consensus 19 GY~Y~wwKGws~sD~M~vTrr~m~~A~~~v~kql~~vs~~l~~tKkh-LsqRId~vd~ 75 (126)
T PF07889_consen 19 GYGYMWWKGWSFSDLMFVTRRSMSDAVASVSKQLEQVSESLSSTKKH-LSQRIDRVDD 75 (126)
T ss_pred HheeeeecCCchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHh
Confidence 377899988744455554443 5555555666777777777776654 3344444433
No 28
>cd00219 ToxGAP GTPase-activating protein (GAP) domain found in bacterial cytotoxins, ExoS, SptP, and YopE. Part of protein secretion system; stimulates Rac1- dependent cytoskeletal changes that promote bacterial internalization.
Probab=46.67 E-value=15 Score=34.78 Aligned_cols=35 Identities=23% Similarity=0.448 Sum_probs=26.1
Q ss_pred HHhhccccccceeeEEEeecCCChHHHHHHHHHHHHHHHHhh
Q psy13798 16 WKLCGSVWTGSRFYTHIWFKSPLSTELYQTMRRVHDAVVSVA 57 (614)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~pqdL~~~m~klhetfValA 57 (614)
|--||.-- --|..+-.|++|+.+|++||+-+--||
T Consensus 80 WGT~Gg~a-------s~~V~~As~e~L~~a~~~lh~~~~eva 114 (120)
T cd00219 80 WGTCGGAA-------SELVDSASPEQLTEAAKQLHGLMQEVA 114 (120)
T ss_pred hhccchHH-------HHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 66776522 247889999999999999998654333
No 29
>COG1344 FlgL Flagellin and related hook-associated proteins [Cell motility and secretion]
Probab=46.45 E-value=28 Score=36.90 Aligned_cols=39 Identities=18% Similarity=0.319 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHhh------hccchhhHHHHHHHHHHhhhh
Q psy13798 40 TELYQTMRRVHDAVVSVA------GSLQSTQPEVQYLKERHLQLR 78 (614)
Q Consensus 40 qdL~~~m~klhetfValA------g~lq~~H~~V~~~KeqyL~~R 78 (614)
+|....|+||+|..|..+ .....|.++|+++||+.++.=
T Consensus 81 ~~~~~~lqrirelavqaan~t~s~~dr~~iq~Ei~~l~~el~~ia 125 (360)
T COG1344 81 SEISKILQRIKELAVQAANGTLSDADRAAIQKEIEQLLDELDNIA 125 (360)
T ss_pred HHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 578889999999999999 567788899999999887753
No 30
>PF08653 DASH_Dam1: DASH complex subunit Dam1; InterPro: IPR013962 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=46.30 E-value=36 Score=28.58 Aligned_cols=36 Identities=14% Similarity=0.211 Sum_probs=27.5
Q ss_pred ChHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHhhh
Q psy13798 38 LSTELYQTMRRVHDAVVSVAGSLQSTQPEVQYLKERHLQL 77 (614)
Q Consensus 38 ~pqdL~~~m~klhetfValAg~lq~~H~~V~~~KeqyL~~ 77 (614)
.=.||...|+-||.-+. +|+.||++|....|-+=.|
T Consensus 6 ~f~eL~D~~~~L~~n~~----~L~~ihesL~~FNESFasf 41 (58)
T PF08653_consen 6 QFAELSDSMETLDKNME----QLNQIHESLSDFNESFASF 41 (58)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 33678888888887775 6789999999888876443
No 31
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=44.79 E-value=17 Score=33.90 Aligned_cols=51 Identities=18% Similarity=0.331 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHhhh-hhhhhcCCCcccc
Q psy13798 40 TELYQTMRRVHDAVVSVAGSLQSTQPEVQYLKERHLQL-RQTYLKDSTNVFD 90 (614)
Q Consensus 40 qdL~~~m~klhetfValAg~lq~~H~~V~~~KeqyL~~-Rr~~l~D~tdvFe 90 (614)
++|..-+++|.+.+..+.+.++.+|.+++..+++...| ++.+++|=-+|.|
T Consensus 21 ~~l~~~~~~l~~~~~r~~ae~en~~~r~~~e~~~~~~~~~~~~~~~ll~v~D 72 (165)
T PF01025_consen 21 EELEKEIEELKERLLRLQAEFENYRKRLEKEKEEAKKYALEKFLKDLLPVLD 72 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888999999999999999999999999998887764 4677887777776
No 32
>PF13990 YjcZ: YjcZ-like protein
Probab=42.23 E-value=33 Score=36.38 Aligned_cols=52 Identities=19% Similarity=0.340 Sum_probs=31.0
Q ss_pred hHHHHhhccccccceeeEEEeecCCChHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHhhhhhhh
Q psy13798 13 KWLWKLCGSVWTGSRFYTHIWFKSPLSTELYQTMRRVHDAVVSVAGSLQSTQPEVQYLKERHLQLRQTY 81 (614)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~pqdL~~~m~klhetfValAg~lq~~H~~V~~~KeqyL~~Rr~~ 81 (614)
+||=|||++.=.|- +++-++++.+.+|-.+++.++..-..++|||..+..+|
T Consensus 55 ~wleeLt~~l~pgh-----------------lALT~vnq~L~~l~~~~~~~a~~s~~l~~qL~~l~~~f 106 (270)
T PF13990_consen 55 GWLEELTGSLDPGH-----------------LALTRVNQRLTELQQDVARLAQYSPSLRQQLEALAEQF 106 (270)
T ss_pred HHHHHHHhccCcch-----------------hHHHHHHHHHHHHHHhhhhhcccChhHHHHHHHHHHHH
Confidence 68888888765441 45666666666666666555544455555555444433
No 33
>PF08838 DUF1811: Protein of unknown function (DUF1811); InterPro: IPR014938 This entry consists uncharacterised bacterial proteins. Some of the proteins are annotated as being transcriptional regulators (see Q4MQL7 from SWISSPROT, Q65MA2 from SWISSPROT). The structure of one of the proteins has revealed a beta-barrel like structure with helix-turn-helix like motif. ; PDB: 2YXY_A 1SF9_A.
Probab=41.98 E-value=44 Score=31.02 Aligned_cols=49 Identities=14% Similarity=0.177 Sum_probs=32.0
Q ss_pred CChHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHhhhhhhhhcCCCcc
Q psy13798 37 PLSTELYQTMRRVHDAVVSVAGSLQSTQPEVQYLKERHLQLRQTYLKDSTNV 88 (614)
Q Consensus 37 ~~pqdL~~~m~klhetfValAg~lq~~H~~V~~~KeqyL~~Rr~~l~D~tdv 88 (614)
-+..||.+-|++|+|-- -=++-..++.++.+++..++--+-|+| ||.|+
T Consensus 7 Ms~~EL~~Ei~~L~eka--rKAEq~G~~nE~aV~erK~~mAksYl~-dp~~f 55 (102)
T PF08838_consen 7 MSEEELRQEIARLKEKA--RKAEQLGIVNEYAVYERKIIMAKSYLL-DPSDF 55 (102)
T ss_dssp --HHHHHHHHHHHHHHH--HHHHHCT-HHHHHHHHHHHHHHHHCCS--GGGS
T ss_pred cCHHHHHHHHHHHHHHH--HHHHHcCCccHHHHHHHHHHHHHHHhC-Chhhc
Confidence 46789999999999974 445566677777777766665544444 66654
No 34
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=41.63 E-value=70 Score=24.22 Aligned_cols=37 Identities=3% Similarity=0.132 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHhh
Q psy13798 40 TELYQTMRRVHDAVVSVAGSLQSTQPEVQYLKERHLQ 76 (614)
Q Consensus 40 qdL~~~m~klhetfValAg~lq~~H~~V~~~KeqyL~ 76 (614)
++|...|++||+-|+.++-.|..--+.|..+.+.+-+
T Consensus 9 ~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~ 45 (60)
T cd00193 9 EQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDN 45 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577778888888888877665544445444444433
No 35
>PF10093 DUF2331: Uncharacterized protein conserved in bacteria (DUF2331); InterPro: IPR016633 This entry describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=41.26 E-value=38 Score=37.26 Aligned_cols=65 Identities=20% Similarity=0.284 Sum_probs=49.8
Q ss_pred cccccceeeEEEe-----------------ecCCChHHHHHHHHHHHHHHHHhhhc---cchhhHHHHHHHHHHhhhhhh
Q psy13798 21 SVWTGSRFYTHIW-----------------FKSPLSTELYQTMRRVHDAVVSVAGS---LQSTQPEVQYLKERHLQLRQT 80 (614)
Q Consensus 21 ~~~~~~~~~~~~~-----------------~~~~~pqdL~~~m~klhetfValAg~---lq~~H~~V~~~KeqyL~~Rr~ 80 (614)
-.|.|..|.-||| +...+|.|+..+++++|...-....- .+..-+..+.++++-.+.|++
T Consensus 278 AqwAgkPFvWhIYpQ~d~aHl~KL~AFL~~y~~~~~~~~~~a~~~~~~~wN~~~~~~~~w~~~~~~~~~~~~~a~~w~~~ 357 (374)
T PF10093_consen 278 AQWAGKPFVWHIYPQEDDAHLDKLDAFLDRYCAGLPPEAAAALRAFWRAWNGGQDAPDAWQDLLEHLPEWQQHARAWRQQ 357 (374)
T ss_pred HHHhCCCceEecCcCchhhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhCCCCchhhHHHHHHHhHHHHHHHHHHHHH
Confidence 4699999999997 44567778888888888776543322 455667788889999999999
Q ss_pred hhcCC
Q psy13798 81 YLKDS 85 (614)
Q Consensus 81 ~l~D~ 85 (614)
+++.+
T Consensus 358 l~~~~ 362 (374)
T PF10093_consen 358 LLAQG 362 (374)
T ss_pred HHhcc
Confidence 98876
No 36
>cd04920 ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC). This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=41.15 E-value=23 Score=28.41 Aligned_cols=15 Identities=13% Similarity=0.149 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHH
Q psy13798 40 TELYQTMRRVHDAVV 54 (614)
Q Consensus 40 qdL~~~m~klhetfV 54 (614)
+|+.+++|+|||.|+
T Consensus 48 ~d~~~av~~LH~~f~ 62 (63)
T cd04920 48 DQADGLCARLHFQLI 62 (63)
T ss_pred HHHHHHHHHHHHHHh
Confidence 789999999999986
No 37
>PRK14145 heat shock protein GrpE; Provisional
Probab=40.42 E-value=28 Score=35.16 Aligned_cols=44 Identities=14% Similarity=0.112 Sum_probs=32.2
Q ss_pred HHHHHHHHHHhhhccchhhHHHHHHHHHHhhhhhhhhcCCCccc
Q psy13798 46 MRRVHDAVVSVAGSLQSTQPEVQYLKERHLQLRQTYLKDSTNVF 89 (614)
Q Consensus 46 m~klhetfValAg~lq~~H~~V~~~KeqyL~~Rr~~l~D~tdvF 89 (614)
+.+|.+.+..|-.++.+++.++..++-.|-||||+..||--++.
T Consensus 47 ~~~l~~~l~~le~e~~el~d~~lR~~AEfeN~rkR~~kE~e~~~ 90 (196)
T PRK14145 47 IEELKQKLQQKEVEAQEYLDIAQRLKAEFENYRKRTEKEKSEMV 90 (196)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666777777777777777777788899999887755443
No 38
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=39.68 E-value=76 Score=26.87 Aligned_cols=41 Identities=15% Similarity=0.276 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHhhhhhh
Q psy13798 40 TELYQTMRRVHDAVVSVAGSLQSTQPEVQYLKERHLQLRQT 80 (614)
Q Consensus 40 qdL~~~m~klhetfValAg~lq~~H~~V~~~KeqyL~~Rr~ 80 (614)
|.|..-|+|++++-+++.-|||+-+.+.+.+.++-=+||+.
T Consensus 14 Q~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e 54 (61)
T PF08826_consen 14 QAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKE 54 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777889999999999999999888877777776666654
No 39
>PF07160 DUF1395: Protein of unknown function (DUF1395); InterPro: IPR009829 This family consists of several hypothetical eukaryotic proteins of around 250 residues in length. The function of this family is unknown.; PDB: 4AJ5_G.
Probab=39.12 E-value=54 Score=33.74 Aligned_cols=34 Identities=21% Similarity=0.330 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHH
Q psy13798 40 TELYQTMRRVHDAVVSVAGSLQSTQPEVQYLKER 73 (614)
Q Consensus 40 qdL~~~m~klhetfValAg~lq~~H~~V~~~Keq 73 (614)
++|...|++|+..+.+|..+|+.+...|+.++|+
T Consensus 18 ~~~~~~L~~i~~~~~~i~~~l~~~~~~l~~~~~~ 51 (243)
T PF07160_consen 18 PNLKDTLSKIDQEVSAIEELLNDIEQELQREEEA 51 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688899999999999999999999988887764
No 40
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=38.66 E-value=66 Score=29.20 Aligned_cols=61 Identities=11% Similarity=0.192 Sum_probs=40.3
Q ss_pred EEEeecCC---ChHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHH--HHhhhh--h--hhhcCCCcccc
Q psy13798 30 THIWFKSP---LSTELYQTMRRVHDAVVSVAGSLQSTQPEVQYLKE--RHLQLR--Q--TYLKDSTNVFD 90 (614)
Q Consensus 30 ~~~~~~~~---~pqdL~~~m~klhetfValAg~lq~~H~~V~~~Ke--qyL~~R--r--~~l~D~tdvFe 90 (614)
.|+||-.. -=.+|.+-++.+++..-.|-.+-+.++++|+.+|+ .||.-+ + .|.|++-=||-
T Consensus 17 y~l~~g~~G~~~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiEe~AR~~Lg~vk~gEivy~ 86 (105)
T PRK00888 17 YSLWFGKNGILDYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAIEERARNELGMVKPGETFYR 86 (105)
T ss_pred HHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHcCCCCCCCEEEE
Confidence 34565433 23567777778888888888888888888888887 577632 2 23455554543
No 41
>PF06013 WXG100: Proteins of 100 residues with WXG; InterPro: IPR010310 ESAT-6 is a small protein appears to be of fundamental importance in virulence and protective immunity in Mycobacterium tuberculosis. Homologues have been detected in other Gram-positive bacterial species. It may represent a novel secretion system potentially driven by the PF01580 from PFAM domains in the YukA-like proteins []. Members of this protein family include secretion targets for type main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from PF06013 from PFAM. The best characterised member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have long C-terminal extension. ; PDB: 3FAV_A 1WA8_A 3Q4H_B 2KG7_A 2VRZ_B 2VS0_B 3OGI_A 3H6P_B 3GVM_B 3GWK_C ....
Probab=38.59 E-value=82 Score=24.83 Aligned_cols=50 Identities=10% Similarity=0.169 Sum_probs=36.5
Q ss_pred HHhhccccccceeeEEEeecCCChHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHhh
Q psy13798 16 WKLCGSVWTGSRFYTHIWFKSPLSTELYQTMRRVHDAVVSVAGSLQSTQPEVQYLKERHLQ 76 (614)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~pqdL~~~m~klhetfValAg~lq~~H~~V~~~KeqyL~ 76 (614)
++-|.+.|.|. -.+.....|+++++.+--|...|+.+.+.|+..++.|..
T Consensus 34 ~~~l~~~W~G~-----------a~~af~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~~~~~ 83 (86)
T PF06013_consen 34 IDSLQASWQGE-----------AADAFQDKFEEWNQAFRQLNEALEELSQALRQAAQNYEQ 83 (86)
T ss_dssp HHHHGGGBTSS-----------TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhCCch-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34457778775 346667777788888888888888888888888887764
No 42
>PF07028 DUF1319: Protein of unknown function (DUF1319); InterPro: IPR010746 This entry is represented by Commelina yellow mottle virus, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family contains a number of viral proteins of unknown function approximately 200 residues long. Family members seem to be restricted to badnaviruses.
Probab=38.59 E-value=60 Score=31.14 Aligned_cols=43 Identities=21% Similarity=0.356 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHhhhhhhhhcC
Q psy13798 42 LYQTMRRVHDAVVSVAGSLQSTQPEVQYLKERHLQLRQTYLKD 84 (614)
Q Consensus 42 L~~~m~klhetfValAg~lq~~H~~V~~~KeqyL~~Rr~~l~D 84 (614)
+..-+++++.-.-..=.+|+.+++++..+++.-.+||+.||+.
T Consensus 44 ~~~~lk~~~ki~~~Qr~~l~~l~~~l~~l~~eL~~Lr~~~l~r 86 (126)
T PF07028_consen 44 LLEELKNLSKIQESQRSELKELKQELDVLSKELQALRKEYLER 86 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3345555665555666779999999999999999999999863
No 43
>KOG2574|consensus
Probab=37.62 E-value=14 Score=41.58 Aligned_cols=43 Identities=19% Similarity=0.228 Sum_probs=33.9
Q ss_pred ccceeeEEEeecCCChHHHHHHHHHHHHHHHHhhhccchhhHHHH
Q psy13798 24 TGSRFYTHIWFKSPLSTELYQTMRRVHDAVVSVAGSLQSTQPEVQ 68 (614)
Q Consensus 24 ~~~~~~~~~~~~~~~pqdL~~~m~klhetfValAg~lq~~H~~V~ 68 (614)
+|--||..|.- .+|-||..-|-||--+=|+||+|+.+.|+...
T Consensus 275 ~Gyly~s~ivQ--k~Ppdl~~ka~Rl~aAKvtLAARVDa~he~~~ 317 (492)
T KOG2574|consen 275 TGYLYASDIVQ--KTPPDLRKKAARLVAAKVTLAARVDAGHESPN 317 (492)
T ss_pred cceeeHHhHhh--hcCccHHHHHHHHHHHHHHHHHHhhccccCCc
Confidence 34444444443 47889999999999999999999999999554
No 44
>PF04761 Phage_Treg: Lactococcus bacteriophage putative transcription regulator; InterPro: IPR006848 This family represents a number of putative transcription repressor proteins found in several Lactococcus bacteriophages. Horizontal transfer may account for the presence of similar proteins in Lactococcus species [].
Probab=37.61 E-value=24 Score=29.44 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHhhhhhhhhcCCC
Q psy13798 64 QPEVQYLKERHLQLRQTYLKDST 86 (614)
Q Consensus 64 H~~V~~~KeqyL~~Rr~~l~D~t 86 (614)
++.||-+||+.+.+.|.||+|+-
T Consensus 16 q~sve~yk~kl~~~s~~flq~sl 38 (57)
T PF04761_consen 16 QESVEFYKEKLSVDSKDFLQNSL 38 (57)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 57899999999999999999863
No 45
>PF10929 DUF2811: Protein of unknown function (DUF2811); InterPro: IPR021231 This is a bacterial family of uncharacterised proteins.
Probab=36.48 E-value=54 Score=27.71 Aligned_cols=43 Identities=19% Similarity=0.282 Sum_probs=30.3
Q ss_pred ecCCChHHHHHHHHHHHHH----------HHHhhhccchhhHHHHHHHHHHhh
Q psy13798 34 FKSPLSTELYQTMRRVHDA----------VVSVAGSLQSTQPEVQYLKERHLQ 76 (614)
Q Consensus 34 ~~~~~pqdL~~~m~klhet----------fValAg~lq~~H~~V~~~KeqyL~ 76 (614)
+...+|.||.++|++.-|+ =.|||+=|-.=-.+....++.||+
T Consensus 2 ~~aeiPe~L~~~m~~fie~hP~WDQ~Rl~~aALa~FL~QnG~~~r~~~r~Yl~ 54 (57)
T PF10929_consen 2 FEAEIPEDLHQAMKDFIETHPNWDQYRLFQAALAGFLLQNGCQDRAVTRVYLE 54 (57)
T ss_pred ccccccHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCchhHHHHHHHHH
Confidence 3567999999999987664 246777665545556666777765
No 46
>PRK14158 heat shock protein GrpE; Provisional
Probab=36.40 E-value=36 Score=34.23 Aligned_cols=48 Identities=6% Similarity=0.078 Sum_probs=32.7
Q ss_pred hHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHhhhhhhhhcCCC
Q psy13798 39 STELYQTMRRVHDAVVSVAGSLQSTQPEVQYLKERHLQLRQTYLKDST 86 (614)
Q Consensus 39 pqdL~~~m~klhetfValAg~lq~~H~~V~~~KeqyL~~Rr~~l~D~t 86 (614)
|.+....+..|.+-+..|-.++.++.+++..++-.|-||||+.-||-.
T Consensus 35 ~~~~~~~~~~le~~l~~le~e~~el~d~~lR~~AefeN~RkR~~kE~e 82 (194)
T PRK14158 35 PVAAADRIKELEEALAAKEAEAAANWDKYLRERADLENYRKRVQKEKE 82 (194)
T ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666777777677777777777777777777788888765543
No 47
>PF06721 DUF1204: Protein of unknown function (DUF1204); InterPro: IPR009596 This family represents the C terminus of a number of Arabidopsis thaliana hypothetical proteins of unknown function. Family members contain a conserved DFD motif.
Probab=36.08 E-value=29 Score=35.54 Aligned_cols=55 Identities=9% Similarity=0.141 Sum_probs=45.1
Q ss_pred CChHHHHHH---HHHHHHHHHHhhhccchhhHHHHHHHHHHh-hhhhhhhcCCCccccc
Q psy13798 37 PLSTELYQT---MRRVHDAVVSVAGSLQSTQPEVQYLKERHL-QLRQTYLKDSTNVFDV 91 (614)
Q Consensus 37 ~~pqdL~~~---m~klhetfValAg~lq~~H~~V~~~KeqyL-~~Rr~~l~D~tdvFe~ 91 (614)
.+-|||.++ ++++.+-|+-|++|+.++...++.-|+.|+ |-||-.|+|-.+.|..
T Consensus 33 ~~~~~~~r~~~d~~~~~~K~deLedr~~se~KRLRsrR~~~AEn~rrs~L~kv~~l~QA 91 (228)
T PF06721_consen 33 VMGQERDRCQDDAEKMNVKFDELEDRISSEQKRLRSRRINYAENNRRSALEKVASLYQA 91 (228)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677654 678889999999999999999999999998 4577778887888775
No 48
>TIGR02889 spore_YpeB germination protein YpeB. Members of this family are YpeB, a protein usually encoded with the putative spore-cortex-lytic enzyme SleB and required, together with SleB, for normal germination. This family is retricted to endospore-forming species in the Firmicutes lineage of bacteria, and found in all such species to date except Clostridium perfringens. The matching phenotypes of mutants in SleB (called a lytic transglycosylase) and YpeB suggests that YpeB is necessary to allow SleB to function.
Probab=36.05 E-value=30 Score=38.52 Aligned_cols=48 Identities=23% Similarity=0.268 Sum_probs=43.5
Q ss_pred cCCChHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHhhhhhhhh
Q psy13798 35 KSPLSTELYQTMRRVHDAVVSVAGSLQSTQPEVQYLKERHLQLRQTYL 82 (614)
Q Consensus 35 ~~~~pqdL~~~m~klhetfValAg~lq~~H~~V~~~KeqyL~~Rr~~l 82 (614)
+.||..|=...|++||+.-+.|-.+|+.|..+|..-+-+++.+|+..-
T Consensus 119 g~~lt~~e~~tL~~L~~~a~~l~~~L~~~q~~v~~g~l~w~~~~~~~~ 166 (435)
T TIGR02889 119 GKSLSDKEYKTLTTLYNQAVKLENQLRKVQNIVMQGGVRWGEIRKLYS 166 (435)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchhHhhhhc
Confidence 569999999999999999999999999999999988888888888544
No 49
>COG3890 ERG8 Phosphomevalonate kinase [Lipid metabolism]
Probab=35.67 E-value=44 Score=36.17 Aligned_cols=43 Identities=19% Similarity=0.281 Sum_probs=25.6
Q ss_pred EeecCCChHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHhhhhhhh
Q psy13798 32 IWFKSPLSTELYQTMRRVHDAVVSVAGSLQSTQPEVQYLKERHLQLRQTY 81 (614)
Q Consensus 32 ~~~~~~~pqdL~~~m~klhetfValAg~lq~~H~~V~~~KeqyL~~Rr~~ 81 (614)
-|.++-+|.||+ ++..++-.++- |+++ ++++..|+....||++
T Consensus 215 ~w~ns~~peelk-c~de~nsrvl~----l~~~--sLdE~~s~~~~irrsl 257 (337)
T COG3890 215 KWRNSILPEELK-CNDEMNSRVLN----LIKL--SLDESNSKSKAIRRSL 257 (337)
T ss_pred HHhhcCChHHHH-hHHHHHHHHHH----HHhh--hHHHHHHHHHHHHHHH
Confidence 388999999998 66665555544 3333 3444444554455443
No 50
>PF11020 DUF2610: Domain of unknown function (DUF2610); InterPro: IPR021277 This family is conserved in Proteobacteria. One member is annotated as being elongation factor P but this could not be confirmed.
Probab=35.60 E-value=37 Score=30.48 Aligned_cols=31 Identities=16% Similarity=0.498 Sum_probs=23.8
Q ss_pred CcccccchhHHHHhhccccccceeeEEEeecCCChHHHHHHHHHHHH
Q psy13798 5 SPIRFHHDKWLWKLCGSVWTGSRFYTHIWFKSPLSTELYQTMRRVHD 51 (614)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pqdL~~~m~klhe 51 (614)
.||. |.++||-|.-|- -+|++++.++.||||
T Consensus 29 HPl~-~Q~~WLskeRgG---------------~IP~~V~~sl~kL~~ 59 (82)
T PF11020_consen 29 HPLQ-FQATWLSKERGG---------------QIPEKVMDSLSKLYK 59 (82)
T ss_pred CchH-HHHHHHHHhhCC---------------CCCHHHHHHHHHHHH
Confidence 3543 458999987553 369999999999997
No 51
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=34.89 E-value=1e+02 Score=27.69 Aligned_cols=52 Identities=19% Similarity=0.290 Sum_probs=38.2
Q ss_pred ccccceeeEEEeecCCChHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHhhhhhhh
Q psy13798 22 VWTGSRFYTHIWFKSPLSTELYQTMRRVHDAVVSVAGSLQSTQPEVQYLKERHLQLRQTY 81 (614)
Q Consensus 22 ~~~~~~~~~~~~~~~~~pqdL~~~m~klhetfValAg~lq~~H~~V~~~KeqyL~~Rr~~ 81 (614)
||-|.-||.- .++..+...|.+-.-.|-.++..+.++++.+++++-.++..+
T Consensus 72 v~iG~g~~vE--------~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~~l 123 (126)
T TIGR00293 72 VSIGSGYYVE--------KDAEEAIEFLKKRIEELEKAIEKLQEALAELASRAQQLEQEA 123 (126)
T ss_pred EEcCCCEEEE--------ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666643 356777777777777788888888888888888887776553
No 52
>PF08650 DASH_Dad4: DASH complex subunit Dad4; InterPro: IPR013959 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=34.73 E-value=49 Score=28.99 Aligned_cols=39 Identities=5% Similarity=0.210 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHhhhccchhhH---HHHHHHHHHhhhhhhh
Q psy13798 43 YQTMRRVHDAVVSVAGSLQSTQP---EVQYLKERHLQLRQTY 81 (614)
Q Consensus 43 ~~~m~klhetfValAg~lq~~H~---~V~~~KeqyL~~Rr~~ 81 (614)
-.-|.||+|+++-|=-.|++|.. +|+..-+-+-+|||.+
T Consensus 17 i~NvekLNEsv~~lN~~l~eIn~~N~~le~~~qm~enY~~nv 58 (72)
T PF08650_consen 17 IGNVEKLNESVAELNQELEEINRANKNLEIVAQMWENYQRNV 58 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHH
Confidence 34578999999999999999864 5666667777777765
No 53
>PRK12722 transcriptional activator FlhC; Provisional
Probab=33.76 E-value=27 Score=35.13 Aligned_cols=43 Identities=26% Similarity=0.338 Sum_probs=35.1
Q ss_pred HHHHHHHHhhhccchhhHHHHHHHHHHhhhhhhh---------hcCCCcccc
Q psy13798 48 RVHDAVVSVAGSLQSTQPEVQYLKERHLQLRQTY---------LKDSTNVFD 90 (614)
Q Consensus 48 klhetfValAg~lq~~H~~V~~~KeqyL~~Rr~~---------l~D~tdvFe 90 (614)
+|=+.+|+|-+|||.||.+..--.|+-+.|.|.+ |.+++|.|-
T Consensus 14 ~lA~~li~LGaR~q~leset~Ls~~rl~~Lyke~~G~spPkG~lP~S~dWF~ 65 (187)
T PRK12722 14 QLAMELITLGARLQVLESETQLSRERLIKLYKELRGVSPPKGMLPFSTDWFM 65 (187)
T ss_pred HHHHHHHHcCcHHHHHHHHHCcCHHHHHHHHHHHcCCCCCCCCCCCchHHHc
Confidence 3556799999999999999988888887777766 667777776
No 54
>PF13060 DUF3921: Protein of unknown function (DUF3921)
Probab=33.63 E-value=1.1e+02 Score=25.69 Aligned_cols=43 Identities=21% Similarity=0.322 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHhhhccc--h-hhHHHHHHHHHHhhh-------hhhhhc
Q psy13798 41 ELYQTMRRVHDAVVSVAGSLQ--S-TQPEVQYLKERHLQL-------RQTYLK 83 (614)
Q Consensus 41 dL~~~m~klhetfValAg~lq--~-~H~~V~~~KeqyL~~-------Rr~~l~ 83 (614)
.|+|.-+.||.+.--|-..|. . +-..|+.-.|.||.- .|+|||
T Consensus 5 qlsmiqkaih~tydelgkei~~~g~~~d~i~kaqeeylsals~et~idkrylk 57 (58)
T PF13060_consen 5 QLSMIQKAIHRTYDELGKEIDLQGVIADEIQKAQEEYLSALSHETLIDKRYLK 57 (58)
T ss_pred HHHHHHHHHHHhHHHHhHHhhhcchHHHHHHHHHHHHHHHhhHHHHHHHHHhc
Confidence 577878889999988876653 2 345666677888863 456665
No 55
>PRK14139 heat shock protein GrpE; Provisional
Probab=33.60 E-value=45 Score=33.34 Aligned_cols=39 Identities=10% Similarity=0.100 Sum_probs=21.3
Q ss_pred HHHHHHHhhhccchhhHHHHHHHHHHhhhhhhhhcCCCc
Q psy13798 49 VHDAVVSVAGSLQSTQPEVQYLKERHLQLRQTYLKDSTN 87 (614)
Q Consensus 49 lhetfValAg~lq~~H~~V~~~KeqyL~~Rr~~l~D~td 87 (614)
|.+.+..|-.++.++.+++..++-.|=||||+.-||--+
T Consensus 37 l~~~l~~le~e~~elkd~~lR~~AefeN~rKR~~kE~e~ 75 (185)
T PRK14139 37 LEAELAEAEAKAAELQDSFLRAKAETENVRRRAQEDVAK 75 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555555555555555788876665433
No 56
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=33.35 E-value=76 Score=30.19 Aligned_cols=38 Identities=26% Similarity=0.428 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHhhhh
Q psy13798 41 ELYQTMRRVHDAVVSVAGSLQSTQPEVQYLKERHLQLR 78 (614)
Q Consensus 41 dL~~~m~klhetfValAg~lq~~H~~V~~~KeqyL~~R 78 (614)
|+...+.+|++.+..+-.++++....++.+|++|-..|
T Consensus 85 ~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~ 122 (191)
T PF04156_consen 85 ELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELR 122 (191)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 55666666677776666666666666666666655555
No 57
>TIGR01679 bact_FAD_ox FAD-linked oxidoreductase. This model represents a family of bacterial oxidoreductases with covalently linked FAD, closely related to two different eukaryotic oxidases, L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae.
Probab=33.13 E-value=88 Score=33.99 Aligned_cols=63 Identities=11% Similarity=0.056 Sum_probs=45.0
Q ss_pred ceeeEEEeecCCChHHHHHHHHHHHHHHHHhhhccch--hh----HHHHHH---HHHHhhhhhhhhcCCCcccccc
Q psy13798 26 SRFYTHIWFKSPLSTELYQTMRRVHDAVVSVAGSLQS--TQ----PEVQYL---KERHLQLRQTYLKDSTNVFDVE 92 (614)
Q Consensus 26 ~~~~~~~~~~~~~pqdL~~~m~klhetfValAg~lq~--~H----~~V~~~---KeqyL~~Rr~~l~D~tdvFe~~ 92 (614)
..+|.+|++... .|...-+++|-|-++..-||.|= .| +.++.. -++||.+||.| ||.++|.+.
T Consensus 341 ~~~~ia~~~~~~--~~~~~~~~~~e~i~~~~gGRpHwgK~~~l~~~~l~~~YP~~~~F~~~r~~~--DP~g~F~n~ 412 (419)
T TIGR01679 341 PTCSIAVHQYAG--MDFESYFRAVEPIFRRYAGRPHWGKRHYLTAATLRERYPRWDDFAAVRDDL--DPDRRFLNP 412 (419)
T ss_pred CcEEEEEEEcCC--CCHHHHHHHHHHHHHHcCCCCCchhccCCCHHHHHHHCcCHHHHHHHHHHh--CCCCccCCH
Confidence 556778876543 46777888888889999998772 22 333322 37789999987 999999864
No 58
>smart00595 MADF subfamily of SANT domain.
Probab=32.75 E-value=50 Score=27.53 Aligned_cols=34 Identities=15% Similarity=0.118 Sum_probs=18.4
Q ss_pred HHHHHHHHhhhccc----hhhHHHHHHHHHHhhhhhhh
Q psy13798 48 RVHDAVVSVAGSLQ----STQPEVQYLKERHLQLRQTY 81 (614)
Q Consensus 48 klhetfValAg~lq----~~H~~V~~~KeqyL~~Rr~~ 81 (614)
.-+|....||.+|. ++-.+.+.++.+|...+|.+
T Consensus 25 ~r~~aW~~Ia~~l~~~~~~~~~kw~~LR~~y~~e~~r~ 62 (89)
T smart00595 25 EKRKAWEEIAEELGLSVEECKKRWKNLRDRYRRELKRL 62 (89)
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777776 44444455555555544443
No 59
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=32.61 E-value=79 Score=33.95 Aligned_cols=50 Identities=16% Similarity=0.274 Sum_probs=41.2
Q ss_pred cCCChHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHhhhhhhhhcC
Q psy13798 35 KSPLSTELYQTMRRVHDAVVSVAGSLQSTQPEVQYLKERHLQLRQTYLKD 84 (614)
Q Consensus 35 ~~~~pqdL~~~m~klhetfValAg~lq~~H~~V~~~KeqyL~~Rr~~l~D 84 (614)
|.-..-+|...+.|+-|++.++=-.|.+++.+|+.+|+++.+|-+.+-++
T Consensus 65 ~~Ms~~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~~~~~~~ 114 (301)
T PF06120_consen 65 KEMSSTQLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQQQLAEK 114 (301)
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 44556788889999999999999999999999999999998876644443
No 60
>PRK13662 hypothetical protein; Provisional
Probab=32.53 E-value=74 Score=31.71 Aligned_cols=43 Identities=14% Similarity=0.167 Sum_probs=27.6
Q ss_pred ChHHHHHHHHHHHHHHHHhhhccchh--hHHHHHHHHHHhhhhhh
Q psy13798 38 LSTELYQTMRRVHDAVVSVAGSLQST--QPEVQYLKERHLQLRQT 80 (614)
Q Consensus 38 ~pqdL~~~m~klhetfValAg~lq~~--H~~V~~~KeqyL~~Rr~ 80 (614)
-|.||...|++==|.+|....+=+.. .+-|+...|+||.|||+
T Consensus 133 Yp~~~~~~v~~~~~~l~~~i~~~~~PF~~~~i~~~~~~~~~~~~~ 177 (177)
T PRK13662 133 YPPDIDRILKENVKILVDWINQKKGPFSPDFVDIWYERYLEYRNR 177 (177)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhcC
Confidence 46666666655555555544333444 56788899999999874
No 61
>PRK15375 pathogenicity island 1 effector protein StpP; Provisional
Probab=32.49 E-value=35 Score=39.20 Aligned_cols=46 Identities=24% Similarity=0.585 Sum_probs=34.8
Q ss_pred HHhhccccccceeeEEEeecCCChHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHH
Q psy13798 16 WKLCGSVWTGSRFYTHIWFKSPLSTELYQTMRRVHDAVVSVAGSLQSTQPEVQYLKE 72 (614)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~pqdL~~~m~klhetfValAg~lq~~H~~V~~~Ke 72 (614)
|--||.-- --|..+-.|+||.++|.|||. |+.+|.-+..+||..|.
T Consensus 239 wgt~gg~~-------~~~v~~as~~~l~~a~~~~~~----~~~~~~~~~~~~~~~~a 284 (535)
T PRK15375 239 WGTCGGEV-------ERWVDKASTHELTQAVKKIHV----IAKELKNVTAELEKIEA 284 (535)
T ss_pred hhccchHH-------HHHHHhcCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhc
Confidence 66676522 237888999999999999995 56777777788877663
No 62
>PRK14161 heat shock protein GrpE; Provisional
Probab=32.36 E-value=52 Score=32.61 Aligned_cols=31 Identities=16% Similarity=0.308 Sum_probs=19.1
Q ss_pred hccchhhHHHHHHHHHHh-------hhhhhhhcCCCcc
Q psy13798 58 GSLQSTQPEVQYLKERHL-------QLRQTYLKDSTNV 88 (614)
Q Consensus 58 g~lq~~H~~V~~~KeqyL-------~~Rr~~l~D~tdv 88 (614)
.+|..+-++++.+||+|| ||||+..||-.+.
T Consensus 26 ~ei~~l~~e~~elkd~~lR~~AefeN~rkR~~ke~~~~ 63 (178)
T PRK14161 26 PEITALKAEIEELKDKLIRTTAEIDNTRKRLEKARDEA 63 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555556666666555 7888877765443
No 63
>cd01091 CDC68-like Related to aminopeptidase P and aminopeptidase M, a member of this domain family is present in cell division control protein 68, a transcription factor.
Probab=32.28 E-value=89 Score=31.56 Aligned_cols=46 Identities=13% Similarity=0.278 Sum_probs=30.7
Q ss_pred CCCh--HHHHHHHHHHHHHHHHhh---hccchhhHHHHHH-HHHHhhhhhhh
Q psy13798 36 SPLS--TELYQTMRRVHDAVVSVA---GSLQSTQPEVQYL-KERHLQLRQTY 81 (614)
Q Consensus 36 ~~~p--qdL~~~m~klhetfValA---g~lq~~H~~V~~~-KeqyL~~Rr~~ 81 (614)
.|.+ ++++.++.++||..|++. .++.+||+.++.. |+.+..|++++
T Consensus 116 ~p~~~~~~~y~~~~~a~~~~i~~lkpG~~~~dv~~~a~~~i~~~~~~~~~~~ 167 (243)
T cd01091 116 DPTSEQQKNYNFLLALQEEILKELKPGAKLSDVYQKTLDYIKKKKPELEPNF 167 (243)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHhChhHHHhC
Confidence 4644 467888888888888764 3578888877554 44434566655
No 64
>PF06013 WXG100: Proteins of 100 residues with WXG; InterPro: IPR010310 ESAT-6 is a small protein appears to be of fundamental importance in virulence and protective immunity in Mycobacterium tuberculosis. Homologues have been detected in other Gram-positive bacterial species. It may represent a novel secretion system potentially driven by the PF01580 from PFAM domains in the YukA-like proteins []. Members of this protein family include secretion targets for type main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from PF06013 from PFAM. The best characterised member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have long C-terminal extension. ; PDB: 3FAV_A 1WA8_A 3Q4H_B 2KG7_A 2VRZ_B 2VS0_B 3OGI_A 3H6P_B 3GVM_B 3GWK_C ....
Probab=32.24 E-value=81 Score=24.86 Aligned_cols=42 Identities=17% Similarity=0.260 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHhh------------hccchhhHHHHHHHHHHhhhhhhh
Q psy13798 40 TELYQTMRRVHDAVVSVA------------GSLQSTQPEVQYLKERHLQLRQTY 81 (614)
Q Consensus 40 qdL~~~m~klhetfValA------------g~lq~~H~~V~~~KeqyL~~Rr~~ 81 (614)
++|...+++|+..+-.|. ..+..+++.++.+++....+++++
T Consensus 21 ~~l~~~~~~l~~~~~~l~~~W~G~a~~af~~~~~~~~~~~~~~~~~L~~~~~~l 74 (86)
T PF06013_consen 21 DELQSQLQQLESSIDSLQASWQGEAADAFQDKFEEWNQAFRQLNEALEELSQAL 74 (86)
T ss_dssp HHHHHHHHHHHHHHHHHGGGBTSSTSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555444442 234455555566666665555543
No 65
>COG0011 Uncharacterized conserved protein [Function unknown]
Probab=32.15 E-value=62 Score=29.78 Aligned_cols=35 Identities=23% Similarity=0.417 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHHHHHHHh-hhccc-------------hhhHHHHHHHHH
Q psy13798 39 STELYQTMRRVHDAVVSV-AGSLQ-------------STQPEVQYLKER 73 (614)
Q Consensus 39 pqdL~~~m~klhetfVal-Ag~lq-------------~~H~~V~~~Keq 73 (614)
=+||..++|++||..+.+ +-|.. .+.++|+..+|.
T Consensus 50 ~del~~~ik~~~Ea~~~~g~~Rv~t~ikId~R~d~~~t~e~Kv~~v~ek 98 (100)
T COG0011 50 LDELMEAVKEAHEAVFEKGAPRVSTVIKIDERRDKELTMEEKVKSVEEK 98 (100)
T ss_pred HHHHHHHHHHHHHHHHhcCCceEEEEEEeeeecCccccHHHHHHHHHHh
Confidence 479999999999999988 55554 455666666653
No 66
>PRK11240 penicillin-binding protein 1C; Provisional
Probab=31.96 E-value=36 Score=40.22 Aligned_cols=29 Identities=7% Similarity=-0.001 Sum_probs=21.4
Q ss_pred HHHHHHHHHHhhhccchhhHHHHHHHHHHhhh
Q psy13798 46 MRRVHDAVVSVAGSLQSTQPEVQYLKERHLQL 77 (614)
Q Consensus 46 m~klhetfValAg~lq~~H~~V~~~KeqyL~~ 77 (614)
-|||.|.++|| ||...+.| +++-|.|||+
T Consensus 133 ~rK~~E~~lA~--~lE~~~sK-~eILe~YLN~ 161 (772)
T PRK11240 133 GGKIRQLWRAL--QLEWHLSK-REILTLYLNR 161 (772)
T ss_pred HHHHHHHHHHH--HHHHhcCH-HHHHHHHhhh
Confidence 58999988766 77666666 4456899994
No 67
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=31.72 E-value=32 Score=26.23 Aligned_cols=36 Identities=11% Similarity=0.143 Sum_probs=25.4
Q ss_pred HHHHHHHHHHH-HHHhhhccchhhHHHHHHHHHHhhhh
Q psy13798 42 LYQTMRRVHDA-VVSVAGSLQSTQPEVQYLKERHLQLR 78 (614)
Q Consensus 42 L~~~m~klhet-fValAg~lq~~H~~V~~~KeqyL~~R 78 (614)
|..+++++-.- +-.+|.+|. ..-..++.|++|.+||
T Consensus 12 l~~~v~~~g~~~W~~Ia~~~~-~~Rt~~qc~~~~~~~~ 48 (48)
T PF00249_consen 12 LLEAVKKYGKDNWKKIAKRMP-GGRTAKQCRSRYQNLL 48 (48)
T ss_dssp HHHHHHHSTTTHHHHHHHHHS-SSSTHHHHHHHHHHHT
T ss_pred HHHHHHHhCCcHHHHHHHHcC-CCCCHHHHHHHHHhhC
Confidence 44455555445 777887777 5667788999999886
No 68
>PHA02503 putative transcription regulator; Provisional
Probab=31.67 E-value=36 Score=28.34 Aligned_cols=23 Identities=26% Similarity=0.459 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHhhhhhhhhcCCC
Q psy13798 64 QPEVQYLKERHLQLRQTYLKDST 86 (614)
Q Consensus 64 H~~V~~~KeqyL~~Rr~~l~D~t 86 (614)
++.||-+|||.-.|.+.||+|+-
T Consensus 16 q~sve~yke~l~~~s~~fl~~sl 38 (57)
T PHA02503 16 QESVEFYKEKLSVYSKDFLQNSL 38 (57)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Confidence 57899999999999999999974
No 69
>PF14769 CLAMP: Flagellar C1a complex subunit C1a-32
Probab=31.64 E-value=1e+02 Score=27.20 Aligned_cols=56 Identities=14% Similarity=0.116 Sum_probs=39.5
Q ss_pred ChHHHHHHHHHHHHHHH-HhhhccchhhHHHHHHHHHHhhhhhhhhcCCCcccccccC
Q psy13798 38 LSTELYQTMRRVHDAVV-SVAGSLQSTQPEVQYLKERHLQLRQTYLKDSTNVFDVERG 94 (614)
Q Consensus 38 ~pqdL~~~m~klhetfV-alAg~lq~~H~~V~~~KeqyL~~Rr~~l~D~tdvFe~~~~ 94 (614)
.+.+++..|.=+++-+. .+. ....+=+.++.+||.-+.+....-.++.+||+.+..
T Consensus 13 s~~q~s~~~~i~~~ll~~~i~-~~~~~~~~~~~fk~~l~~~sv~rpp~~~~iFs~~~~ 69 (101)
T PF14769_consen 13 SWEQTSAFLSILKELLEKNIE-KGMSLEDSFKYFKELLLRHSVQRPPFSIGIFSVDQV 69 (101)
T ss_pred CHHHHHHHHHHHHHHHHHHHH-ccCCHHHHHHHHHHHHHHhccCCCCcccCcCCHHHH
Confidence 34455555544444444 333 777888999999999999888877788889986543
No 70
>KOG0948|consensus
Probab=31.37 E-value=46 Score=40.19 Aligned_cols=63 Identities=22% Similarity=0.357 Sum_probs=44.6
Q ss_pred cceeeEEEeecCCChHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHH----hhhhhhhhc-----CCCccccc
Q psy13798 25 GSRFYTHIWFKSPLSTELYQTMRRVHDAVVSVAGSLQSTQPEVQYLKERH----LQLRQTYLK-----DSTNVFDV 91 (614)
Q Consensus 25 ~~~~~~~~~~~~~~pqdL~~~m~klhetfValAg~lq~~H~~V~~~Keqy----L~~Rr~~l~-----D~tdvFe~ 91 (614)
-.|+|.|-..|++.-.|++...+|=++ |..+++++-.+++..++.| |+-||++|| |+.||-|-
T Consensus 800 E~~l~~hp~~k~~~~~~~~~~f~~K~~----l~~~ik~lk~~l~~~~~i~~ldELk~RkRVLrrLG~~t~ddvie~ 871 (1041)
T KOG0948|consen 800 EARLESHPLHKSSELEELYKEFQRKET----LRAEIKDLKAELKSSQAILQLDELKNRKRVLRRLGYCTSDDVIEL 871 (1041)
T ss_pred HHhhccCcccCChhHHHHHHHHHHHHH----HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhCCCCCCCeEEE
Confidence 468999999999988888777766443 5566666666665555443 677777776 77888773
No 71
>PF12277 DUF3618: Protein of unknown function (DUF3618); InterPro: IPR022062 This domain family is found in bacteria, and is approximately 50 amino acids in length.
Probab=31.22 E-value=99 Score=24.56 Aligned_cols=33 Identities=21% Similarity=0.253 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHH
Q psy13798 40 TELYQTMRRVHDAVVSVAGSLQSTQPEVQYLKER 73 (614)
Q Consensus 40 qdL~~~m~klhetfValAg~lq~~H~~V~~~Keq 73 (614)
.|+.+.=.+|-+++-+|+.||+ ....++..|+.
T Consensus 10 ~dIe~tR~~La~tvd~L~~r~~-P~~~a~~~~~~ 42 (49)
T PF12277_consen 10 RDIERTRAELAETVDELAARLS-PKRLADEAKER 42 (49)
T ss_pred HHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHH
Confidence 4566677789999999999998 66666665554
No 72
>PF14772 NYD-SP28: Sperm tail
Probab=31.20 E-value=1.1e+02 Score=27.17 Aligned_cols=50 Identities=14% Similarity=0.203 Sum_probs=37.7
Q ss_pred cCCChHHHHHHHHHHHHHHHHhhhc----cchhhHHHHHHHHHHhhhhhhhhcC
Q psy13798 35 KSPLSTELYQTMRRVHDAVVSVAGS----LQSTQPEVQYLKERHLQLRQTYLKD 84 (614)
Q Consensus 35 ~~~~pqdL~~~m~klhetfValAg~----lq~~H~~V~~~KeqyL~~Rr~~l~D 84 (614)
..-.|+||..-|..+.+.|-.|-.+ ++++++.|+.-.|||..-.|.-+.|
T Consensus 49 ~~~~~~eL~~~ie~q~~~~e~ii~~Kd~lI~~L~~eL~~~deqy~~~lr~q~~d 102 (104)
T PF14772_consen 49 RKKKPQELRKEIEEQKQACERIIDRKDALIKELQQELKEADEQYVKALRKQAED 102 (104)
T ss_pred HHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4567999999999999888877655 5667777777788887766655443
No 73
>KOG2057|consensus
Probab=31.05 E-value=67 Score=35.55 Aligned_cols=62 Identities=18% Similarity=0.170 Sum_probs=36.1
Q ss_pred HHhhccccccceeeEEEe-----ecCCChHHHHHHHHHHHHHHHHhhhccchhhHH-HHHHHHHHhhhhh
Q psy13798 16 WKLCGSVWTGSRFYTHIW-----FKSPLSTELYQTMRRVHDAVVSVAGSLQSTQPE-VQYLKERHLQLRQ 79 (614)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~-----~~~~~pqdL~~~m~klhetfValAg~lq~~H~~-V~~~KeqyL~~Rr 79 (614)
-++|- .|-+|||.... +-+.+-.|-+.+.||+|.++|.||--|..=.|+ |++-+|+-..|||
T Consensus 45 geIae--aTfmry~EdFpelmnmL~qRMLedNK~~WRRVYKSLiLLaYLikNGSER~VqeAREh~YdLR~ 112 (499)
T KOG2057|consen 45 GEIAE--ATFMRYMEDFPELMNMLFQRMLEDNKDAWRRVYKSLILLAYLIKNGSERFVQEAREHAYDLRR 112 (499)
T ss_pred HHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHh
Confidence 35554 34566665432 012233566788899999999999766544433 4445555545554
No 74
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=30.86 E-value=22 Score=37.91 Aligned_cols=15 Identities=13% Similarity=-0.048 Sum_probs=11.4
Q ss_pred CChHHHHHHHHHHHH
Q psy13798 37 PLSTELYQTMRRVHD 51 (614)
Q Consensus 37 ~~pqdL~~~m~klhe 51 (614)
--++|=.+.++||||
T Consensus 445 ~~~~~a~~~l~~~~~ 459 (490)
T PRK10642 445 SDIQEAKEILVEHYD 459 (490)
T ss_pred cchhhHHHHhhcccc
Confidence 446777888888885
No 75
>PRK14151 heat shock protein GrpE; Provisional
Probab=30.60 E-value=49 Score=32.68 Aligned_cols=34 Identities=12% Similarity=0.101 Sum_probs=17.4
Q ss_pred HHHhhhccchhhHHHHHHHHHHhhhhhhhhcCCC
Q psy13798 53 VVSVAGSLQSTQPEVQYLKERHLQLRQTYLKDST 86 (614)
Q Consensus 53 fValAg~lq~~H~~V~~~KeqyL~~Rr~~l~D~t 86 (614)
+..|-.+|.++.+++..++-.|=||||+.-||-.
T Consensus 29 i~~le~e~~el~d~~lR~~Ae~eN~rkR~~kE~e 62 (176)
T PRK14151 29 VQELEEQLAAAKDQSLRAAADLQNVRRRAEQDVE 62 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444445577777655543
No 76
>PLN00175 aminotransferase family protein; Provisional
Probab=30.59 E-value=66 Score=34.23 Aligned_cols=44 Identities=14% Similarity=0.153 Sum_probs=30.7
Q ss_pred ChHHHHHHHHHHHHHH---------HHhhhccchhhHHHHHHHHHHhhhhhhh
Q psy13798 38 LSTELYQTMRRVHDAV---------VSVAGSLQSTQPEVQYLKERHLQLRQTY 81 (614)
Q Consensus 38 ~pqdL~~~m~klhetf---------ValAg~lq~~H~~V~~~KeqyL~~Rr~~ 81 (614)
.|.||...|+++++.. .+++.-|++-.+.++.++++|..-|+++
T Consensus 273 ~~~~l~~~l~~~~~~~~~~~s~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~l 325 (413)
T PLN00175 273 APPHLTWGVRQAHSFLTFATATPMQWAAVAALRAPESYYEELKRDYSAKKDIL 325 (413)
T ss_pred eCHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 4688999999998743 2445555544455788888888777655
No 77
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=30.54 E-value=70 Score=36.27 Aligned_cols=41 Identities=24% Similarity=0.344 Sum_probs=27.1
Q ss_pred HHHHHHHHHhhhccchhhHHHHHHHHHHhhhhhhhhcCCCc
Q psy13798 47 RRVHDAVVSVAGSLQSTQPEVQYLKERHLQLRQTYLKDSTN 87 (614)
Q Consensus 47 ~klhetfValAg~lq~~H~~V~~~KeqyL~~Rr~~l~D~td 87 (614)
++|++.+--|-..=..-+++|+.+||+|=.+||.+|....+
T Consensus 118 ~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll~~~~~ 158 (560)
T PF06160_consen 118 KEILDELDELLESEEKNREEIEELKEKYRELRKELLAHSFS 158 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 33333333333333444567889999999999999987654
No 78
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=30.40 E-value=83 Score=31.28 Aligned_cols=36 Identities=11% Similarity=0.135 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHhhh
Q psy13798 42 LYQTMRRVHDAVVSVAGSLQSTQPEVQYLKERHLQL 77 (614)
Q Consensus 42 L~~~m~klhetfValAg~lq~~H~~V~~~KeqyL~~ 77 (614)
|..-+.+|.+-.-.|-..++.+++++++++|+|-.|
T Consensus 109 l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L 144 (161)
T TIGR02894 109 LKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTL 144 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566667777888888999999999999999665
No 79
>COG0732 HsdS Restriction endonuclease S subunits [Defense mechanisms]
Probab=30.36 E-value=72 Score=31.77 Aligned_cols=69 Identities=16% Similarity=0.104 Sum_probs=43.7
Q ss_pred HHhhccccccceeeEEEe-----ecCCChH-----HHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHhhhhhhhhcC
Q psy13798 16 WKLCGSVWTGSRFYTHIW-----FKSPLST-----ELYQTMRRVHDAVVSVAGSLQSTQPEVQYLKERHLQLRQTYLKD 84 (614)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~-----~~~~~pq-----dL~~~m~klhetfValAg~lq~~H~~V~~~KeqyL~~Rr~~l~D 84 (614)
-++|-.+|.++.+..-.+ ++-|+|. .+-.-++++-|..-.+..++..++++.|.+.++++.+|++++..
T Consensus 112 ~~~~~~~~~~~~~~~l~~~~~~~~~i~~Ppl~eQ~~I~~iL~~~d~~i~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~ 190 (391)
T COG0732 112 LKLLKSGAGGSTIPNLSKSSLKEIPIPLPPLEEQQAIAKILSTLDDLIELLEKLIELLEAIKQKLFKELFTKGKYLLNN 190 (391)
T ss_pred HHHHHhccCCCccCccCHhhhheeeccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Confidence 344667788887654332 3445652 23334455555555566677777888888888888888887654
No 80
>PRK14154 heat shock protein GrpE; Provisional
Probab=30.05 E-value=51 Score=33.63 Aligned_cols=30 Identities=7% Similarity=0.098 Sum_probs=16.1
Q ss_pred hhhccchhhHHHHHHHHHHhhhhhhhhcCC
Q psy13798 56 VAGSLQSTQPEVQYLKERHLQLRQTYLKDS 85 (614)
Q Consensus 56 lAg~lq~~H~~V~~~KeqyL~~Rr~~l~D~ 85 (614)
|-.++.++++++..++-.|-||||+.-||-
T Consensus 64 le~e~~elkd~~lRl~ADfeNyRKR~~kE~ 93 (208)
T PRK14154 64 MERKVDEYKTQYLRAQAEMDNLRKRIEREK 93 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555556666655443
No 81
>PF14854 LURAP: Leucine rich adaptor protein
Probab=29.99 E-value=59 Score=31.06 Aligned_cols=32 Identities=16% Similarity=0.123 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHhhhccchhhHHHHHHHH
Q psy13798 41 ELYQTMRRVHDAVVSVAGSLQSTQPEVQYLKE 72 (614)
Q Consensus 41 dL~~~m~klhetfValAg~lq~~H~~V~~~Ke 72 (614)
-|++-|.+|-+.=|-|--||-.|||-||.+|-
T Consensus 26 ~Lr~EM~~LRqlDvkLL~QL~~vNEsIe~~KW 57 (121)
T PF14854_consen 26 FLRKEMAGLRQLDVKLLQQLLAVNESIEEVKW 57 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 46778999999999999999999999999883
No 82
>smart00397 t_SNARE Helical region found in SNAREs. All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".
Probab=29.99 E-value=1.3e+02 Score=22.95 Aligned_cols=22 Identities=9% Similarity=0.303 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHhhhccch
Q psy13798 41 ELYQTMRRVHDAVVSVAGSLQS 62 (614)
Q Consensus 41 dL~~~m~klhetfValAg~lq~ 62 (614)
+|...|++||+-|+.++-.|++
T Consensus 16 ~l~~~i~~l~~l~~~i~~~v~~ 37 (66)
T smart00397 16 QLEKSIGELKQIFLDMGTELEE 37 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666555443
No 83
>PF13327 T3SS_LEE_assoc: Type III secretion system subunit
Probab=29.91 E-value=23 Score=34.85 Aligned_cols=74 Identities=26% Similarity=0.327 Sum_probs=47.5
Q ss_pred CCCcccccchhHHHHhhccccccceeeEE--------------Eee-cCCChHHHHHHHHHHHHHHHHhhhccchhhH--
Q psy13798 3 VNSPIRFHHDKWLWKLCGSVWTGSRFYTH--------------IWF-KSPLSTELYQTMRRVHDAVVSVAGSLQSTQP-- 65 (614)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~-~~~~pqdL~~~m~klhetfValAg~lq~~H~-- 65 (614)
++.|.+|-|+.|+=||-=..|- .||=.+ +=| .+++|-+|+.-++++ |+++.||-.+=-
T Consensus 8 ~wqP~~~~Hp~Ww~~lgl~~~~-~~Y~~~~~l~~~Ld~~l~~rrgf~~~~lp~~L~~~q~~~----~~~~~rl~al~lAl 82 (163)
T PF13327_consen 8 AWQPGRFAHPLWWAKLGLNAWQ-YRYGRSPALDRRLDRALRRRRGFPQQPLPAVLTPRQQRL----LRLAPRLPALALAL 82 (163)
T ss_pred HcChHHHhCHHHHHHcCcchhh-hhhccCHHHHHHHHHHHHHHhCCCCcccchhcCHHHHHH----HHhhhhHHHHHHHH
Confidence 3579999999999999667777 444332 112 466777666666554 445555554433
Q ss_pred -HHHHHHHHHhhhhhhh
Q psy13798 66 -EVQYLKERHLQLRQTY 81 (614)
Q Consensus 66 -~V~~~KeqyL~~Rr~~ 81 (614)
-|..+-.+||-+|+|.
T Consensus 83 GL~~L~cpDYl~l~~YR 99 (163)
T PF13327_consen 83 GLLALQCPDYLRLRSYR 99 (163)
T ss_pred HHHHcCCCchhhhHHHH
Confidence 3555667899877663
No 84
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=29.67 E-value=1.2e+02 Score=26.98 Aligned_cols=46 Identities=20% Similarity=0.335 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHhhhccchhhHHHHHHHHHHhhhhhhh--hcCCCcccc
Q psy13798 45 TMRRVHDAVVSVAGSLQSTQPEVQYLKERHLQLRQTY--LKDSTNVFD 90 (614)
Q Consensus 45 ~m~klhetfValAg~lq~~H~~V~~~KeqyL~~Rr~~--l~D~tdvFe 90 (614)
-...|-+++.+|..|+..|-+..+.|+..==-|.+|+ |-...+||.
T Consensus 24 ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~~s~v~~ 71 (80)
T PF10224_consen 24 EILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLMSSSSVFQ 71 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 3334555555666665555555555544322233332 334566665
No 85
>cd04917 ACT_AKiii-LysC-EC_2 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The second ACT domain (ACT2), this CD, is not involved in the binding of heterotrophic effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=29.22 E-value=48 Score=26.11 Aligned_cols=15 Identities=13% Similarity=0.375 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHH
Q psy13798 40 TELYQTMRRVHDAVV 54 (614)
Q Consensus 40 qdL~~~m~klhetfV 54 (614)
+|..+++++||+.|+
T Consensus 49 ~~~~~a~~~Lh~~f~ 63 (64)
T cd04917 49 EDKDEVVQRLHSRLF 63 (64)
T ss_pred HHHHHHHHHHHHHHh
Confidence 789999999999986
No 86
>PLN00107 FAD-dependent oxidoreductase; Provisional
Probab=29.16 E-value=90 Score=32.96 Aligned_cols=74 Identities=11% Similarity=0.163 Sum_probs=44.4
Q ss_pred hhHHHHhhccccccceeeEEE-eecCC----ChHHHHHHHHHHHHH-HHHhhhccc--hhh----HHHHHH---HHHHhh
Q psy13798 12 DKWLWKLCGSVWTGSRFYTHI-WFKSP----LSTELYQTMRRVHDA-VVSVAGSLQ--STQ----PEVQYL---KERHLQ 76 (614)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~-~~~~~----~pqdL~~~m~klhet-fValAg~lq--~~H----~~V~~~---KeqyL~ 76 (614)
|-||=+- ...-|.|| |+++. +|.+....|+.|-+. |....||-| .+| +.|+.+ =++||.
T Consensus 110 dawLSp~------rDSv~I~~~~yr~~~~~~~pr~~~~~f~eiEqial~kygGRPHWGK~h~l~~~~l~~lYPr~~dFla 183 (257)
T PLN00107 110 PAHLGKE------EDALDFDLTYYRSKDDPAAPRLHEDAMEEIEQMAILKYGALPHWGKNRNAAFDGAIAKYKKAGEFLK 183 (257)
T ss_pred chhhCCC------CCeEEEEEEEecccCCccccccHHHHHHHHHHHHHHhcCCcCCchhccCCCHHHHHHHCcCHHHHHH
Confidence 4566551 33445565 77744 244556666666654 777777755 122 222221 257899
Q ss_pred hhhhhhcCCCccccccc
Q psy13798 77 LRQTYLKDSTNVFDVER 93 (614)
Q Consensus 77 ~Rr~~l~D~tdvFe~~~ 93 (614)
+|+.+ ||.++|.++-
T Consensus 184 vR~~l--DP~G~F~N~y 198 (257)
T PLN00107 184 VKERL--DPEGLFSSEW 198 (257)
T ss_pred HHHHh--CCCCccCCHH
Confidence 99987 9999999753
No 87
>PRK02944 OxaA-like protein precursor; Validated
Probab=29.15 E-value=58 Score=33.51 Aligned_cols=19 Identities=42% Similarity=0.548 Sum_probs=16.7
Q ss_pred hhccchhhHHHHHHHHHHh
Q psy13798 57 AGSLQSTQPEVQYLKERHL 75 (614)
Q Consensus 57 Ag~lq~~H~~V~~~KeqyL 75 (614)
..|+|+|+.++|++||+|-
T Consensus 85 ~~km~~iqPe~~~iq~kyk 103 (255)
T PRK02944 85 TKAMQALQPEMQKLKEKYS 103 (255)
T ss_pred HHHHHHccHHHHHHHHHHc
Confidence 4689999999999999984
No 88
>KOG1819|consensus
Probab=29.03 E-value=57 Score=37.76 Aligned_cols=41 Identities=29% Similarity=0.414 Sum_probs=29.2
Q ss_pred cCCChHHHHHHHHH-------------HHHHHHHhhhccchhhHHH-----HHHHHHHh
Q psy13798 35 KSPLSTELYQTMRR-------------VHDAVVSVAGSLQSTQPEV-----QYLKERHL 75 (614)
Q Consensus 35 ~~~~pqdL~~~m~k-------------lhetfValAg~lq~~H~~V-----~~~KeqyL 75 (614)
.+.|++|++++||. ||.-||.+||-...++.+. |.+|..||
T Consensus 632 asslsddvslamkn~~arlkfksse~llhrlfvciagvadqlqtnfasdirkilksvfl 690 (990)
T KOG1819|consen 632 ASSLSDDVSLAMKNLRARLKFKSSEDLLHRLFVCIAGVADQLQTNFASDIRKILKSVFL 690 (990)
T ss_pred cccccchhHHHhhhhhhhhccccHHHHHHHHHHHHHhHHHHHhhhhHHHHHHHHHHHHh
Confidence 46789999999984 6899999988666555443 44454444
No 89
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=28.99 E-value=50 Score=25.36 Aligned_cols=24 Identities=17% Similarity=0.178 Sum_probs=17.4
Q ss_pred EEEeecCCChHHHHHHHHHHHHHHH
Q psy13798 30 THIWFKSPLSTELYQTMRRVHDAVV 54 (614)
Q Consensus 30 ~~~~~~~~~pqdL~~~m~klhetfV 54 (614)
..|.|--+- .|+.+++++||+.|+
T Consensus 42 ~~is~~v~~-~~~~~~~~~lh~~~~ 65 (66)
T cd04922 42 RNISAVIDE-DDATKALRAVHERFF 65 (66)
T ss_pred cEEEEEEeH-HHHHHHHHHHHHHHh
Confidence 345444332 788999999999986
No 90
>COG0612 PqqL Predicted Zn-dependent peptidases [General function prediction only]
Probab=28.78 E-value=57 Score=34.58 Aligned_cols=60 Identities=18% Similarity=0.141 Sum_probs=46.9
Q ss_pred ceeeEEEeecCCChHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHhhhhhhhhcCCCcccc
Q psy13798 26 SRFYTHIWFKSPLSTELYQTMRRVHDAVVSVAGSLQSTQPEVQYLKERHLQLRQTYLKDSTNVFD 90 (614)
Q Consensus 26 ~~~~~~~~~~~~~pqdL~~~m~klhetfValAg~lq~~H~~V~~~KeqyL~~Rr~~l~D~tdvFe 90 (614)
++=||+..++ .++++|..+|+-|.|.+.-.. =--+.|+..|.+=|..+|++..||.++=.
T Consensus 95 s~d~t~y~~~-~l~~~~~~~l~llad~l~~p~----f~~~~~e~Ek~vil~ei~~~~d~p~~~~~ 154 (438)
T COG0612 95 SFDYTVYYLS-VLPDNLDKALDLLADILLNPT----FDEEEVEREKGVILEEIRMRQDDPDDLAF 154 (438)
T ss_pred cchhhhhhhh-hchhhhHHHHHHHHHHHhCCC----CCHHHHHHHHHHHHHHHHhhccCchHHHH
Confidence 4557888888 899999999999988776554 22357888888888888888888877543
No 91
>PF02096 60KD_IMP: 60Kd inner membrane protein; InterPro: IPR001708 This family of proteins is required for the insertion of integral membrane proteins into cellular membranes. Many of these integral membrane proteins are associated with respiratory chain complexes, for example a large number of members of this family play an essential role in the activity and assembly of cytochrome c oxidase. Stage III sporulation protein J (SP3J) is a probable lipoprotein, rich in basic and hydrophobic amino acids. Mutations in the protein abolish the transcription of prespore-specific genes transcribed by the sigma G form of RNA polymerase []. SP3J could be involved in a signal transduction pathway coupling gene expression in the prespore to events in the mother cell, or it may be necessary for essential metabolic interactions between the two cells []. The protein shows a high degree of similarity to Bacillus subtilis YQJG, to yeast OXA1 and also to bacterial 60 kDa inner-membrane proteins [, , , ]. ; GO: 0051205 protein insertion into membrane, 0016021 integral to membrane
Probab=28.68 E-value=50 Score=31.69 Aligned_cols=26 Identities=23% Similarity=0.354 Sum_probs=15.1
Q ss_pred hccchhhHHHHHHHHHHhhhhhhhhc
Q psy13798 58 GSLQSTQPEVQYLKERHLQLRQTYLK 83 (614)
Q Consensus 58 g~lq~~H~~V~~~KeqyL~~Rr~~l~ 83 (614)
.|++++..++|++||+|.+-|+...+
T Consensus 30 ~k~~~~~P~l~~i~~k~~~~~~~~~~ 55 (198)
T PF02096_consen 30 AKMQELQPELKEIQEKYKEDQQKMQQ 55 (198)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 55566666666666666554444333
No 92
>PRK12804 flagellin; Provisional
Probab=28.65 E-value=81 Score=32.69 Aligned_cols=52 Identities=21% Similarity=0.251 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHhhh-------ccchhhHHHHHHHHHHhhhhhhhhcCCCccccc
Q psy13798 40 TELYQTMRRVHDAVVSVAG-------SLQSTQPEVQYLKERHLQLRQTYLKDSTNVFDV 91 (614)
Q Consensus 40 qdL~~~m~klhetfValAg-------~lq~~H~~V~~~KeqyL~~Rr~~l~D~tdvFe~ 91 (614)
+++...|+|+.|-.|..+- .+..|.++|+.+||+.+.+=+.-=-+-..||+.
T Consensus 81 ~~i~~~l~r~rel~v~a~n~gt~s~~dr~~i~~E~~~l~~~i~~~an~~~~nG~~lf~G 139 (301)
T PRK12804 81 TETHSILQRVRELVVQAGNTGTQDGTDLGAIQDEIKALVDEIDGISDRTEFNGKKLLDG 139 (301)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeeeeCC
Confidence 5788889999998887752 567888999999999888744222233456764
No 93
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=28.62 E-value=84 Score=26.87 Aligned_cols=33 Identities=12% Similarity=0.230 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHhhhccchhhHHHHHHHH
Q psy13798 40 TELYQTMRRVHDAVVSVAGSLQSTQPEVQYLKE 72 (614)
Q Consensus 40 qdL~~~m~klhetfValAg~lq~~H~~V~~~Ke 72 (614)
+++...++.|.++=..|..+|+..+++++.++|
T Consensus 17 ~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~ 49 (92)
T PF14712_consen 17 DRLDQQLQELRQSQEELLQQIDRLNEKLKELNE 49 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444555555554444444444
No 94
>PF12998 ING: Inhibitor of growth proteins N-terminal histone-binding; InterPro: IPR024610 Histones undergo numerous post-translational modifications, including acetylation and methylation, at residues which are then probable docking sites for various chromatin remodelling complexes. Inhibitor of growth proteins (INGs) specifically bind to residues that have been thus modified. INGs carry a well-characterised C-terminal PHD-type zinc-finger domain, binding with lysine 4-tri-methylated histone H3 (H3K4me3), as well as this N-terminal domain that binds unmodified H3 tails. Although these two regions can bind histones independently, together they increase the apparent association of the ING for the H3 tail. This entry represents the N-terminal histone binding domain found in inhibitor proteins.; PDB: 4AFL_A.
Probab=28.48 E-value=73 Score=27.28 Aligned_cols=38 Identities=13% Similarity=0.197 Sum_probs=26.9
Q ss_pred CCChHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHhhh
Q psy13798 36 SPLSTELYQTMRRVHDAVVSVAGSLQSTQPEVQYLKERHLQL 77 (614)
Q Consensus 36 ~~~pqdL~~~m~klhetfValAg~lq~~H~~V~~~KeqyL~~ 77 (614)
+.||.||.+-|..|.|- =.+.+++.++|+.+.++|+.-
T Consensus 11 ~~LP~el~r~l~~irel----D~~~~~~~~~~~~~~~~~~~~ 48 (105)
T PF12998_consen 11 ENLPAELQRNLTLIREL----DAKSQDLLEELDQQIQKFIKN 48 (105)
T ss_dssp GGHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHTC
T ss_pred HHChHHHHHHHHHHHHh----hhhHHHHHHHHHHHHHHHHhh
Confidence 46899999888888773 344667777777777776643
No 95
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=28.40 E-value=93 Score=28.59 Aligned_cols=52 Identities=19% Similarity=0.250 Sum_probs=32.8
Q ss_pred ccccceeeEEEeecCCChHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHhhhhhhh
Q psy13798 22 VWTGSRFYTHIWFKSPLSTELYQTMRRVHDAVVSVAGSLQSTQPEVQYLKERHLQLRQTY 81 (614)
Q Consensus 22 ~~~~~~~~~~~~~~~~~pqdL~~~m~klhetfValAg~lq~~H~~V~~~KeqyL~~Rr~~ 81 (614)
||-|.-+|. -.|+..++.-|.+..-.|-.++..+.++++.+++++-.+++.+
T Consensus 80 v~lG~g~~v--------E~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l 131 (140)
T PRK03947 80 VSLGAGYSA--------EKDLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQEL 131 (140)
T ss_pred EEcCCCEEE--------EecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556655553 3456666666666666666666777777776666666666543
No 96
>PHA03385 IX capsid protein IX,hexon associated protein IX; Provisional
Probab=28.38 E-value=57 Score=31.46 Aligned_cols=26 Identities=19% Similarity=0.272 Sum_probs=17.1
Q ss_pred HHHHHHHHhhhccchhhHHHHHHHHH
Q psy13798 48 RVHDAVVSVAGSLQSTQPEVQYLKER 73 (614)
Q Consensus 48 klhetfValAg~lq~~H~~V~~~Keq 73 (614)
.|-+-+-+|-.||+++-++|+++.||
T Consensus 104 ~llaqLealsqqL~~ls~qv~~L~~~ 129 (135)
T PHA03385 104 VLLAQLEALSQQLQELSQQVAQLREQ 129 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 34444556777777777777777665
No 97
>COG0576 GrpE Molecular chaperone GrpE (heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=28.33 E-value=42 Score=33.41 Aligned_cols=8 Identities=25% Similarity=0.364 Sum_probs=3.8
Q ss_pred hhhhhhhc
Q psy13798 76 QLRQTYLK 83 (614)
Q Consensus 76 ~~Rr~~l~ 83 (614)
||||+..|
T Consensus 68 N~rkR~~r 75 (193)
T COG0576 68 NLRKRTER 75 (193)
T ss_pred HHHHHHHH
Confidence 45554443
No 98
>PRK02793 phi X174 lysis protein; Provisional
Probab=28.05 E-value=1.2e+02 Score=26.08 Aligned_cols=36 Identities=11% Similarity=0.119 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHhhhccchhhHHHHHHHHHHhhhh
Q psy13798 43 YQTMRRVHDAVVSVAGSLQSTQPEVQYLKERHLQLR 78 (614)
Q Consensus 43 ~~~m~klhetfValAg~lq~~H~~V~~~KeqyL~~R 78 (614)
...+.+|.+.++..-.++..+..+|+.++++...++
T Consensus 21 e~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 56 (72)
T PRK02793 21 EITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQ 56 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 356778888888888888888888888888776654
No 99
>PRK14157 heat shock protein GrpE; Provisional
Probab=27.98 E-value=52 Score=34.03 Aligned_cols=32 Identities=9% Similarity=0.087 Sum_probs=18.4
Q ss_pred hhhccchhhHHHHHHHHHHhhhhhhhhcCCCc
Q psy13798 56 VAGSLQSTQPEVQYLKERHLQLRQTYLKDSTN 87 (614)
Q Consensus 56 lAg~lq~~H~~V~~~KeqyL~~Rr~~l~D~td 87 (614)
|-.+|.++.+++..++-.|-||||+.-||-.+
T Consensus 89 le~e~~e~kd~llR~~AEfeNyRKR~~rE~e~ 120 (227)
T PRK14157 89 AKKEAAEYLEALQRERAEFINYRNRTQKEQDR 120 (227)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555566788776655433
No 100
>PRK13824 replication initiation protein RepC; Provisional
Probab=27.87 E-value=69 Score=35.30 Aligned_cols=38 Identities=18% Similarity=0.316 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHhhhhh
Q psy13798 41 ELYQTMRRVHDAVVSVAGSLQSTQPEVQYLKERHLQLRQ 79 (614)
Q Consensus 41 dL~~~m~klhetfValAg~lq~~H~~V~~~KeqyL~~Rr 79 (614)
||+=-+.|..| |.++|.+++.=.++++.+||++--+||
T Consensus 140 DLsPL~~R~~E-l~~~A~~~~ae~~~~r~lr~~it~~rR 177 (404)
T PRK13824 140 DLAPLLARAEE-FEALAEQVAAERKALRRLRERLTLCRR 177 (404)
T ss_pred chHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777778777 999999999999999999999999999
No 101
>PF05679 CHGN: Chondroitin N-acetylgalactosaminyltransferase; InterPro: IPR008428 This family represents Chondroitin N-acetylgalactosaminyltransferase. Proteins have a type II transmembrane topology. The enzyme is involved in the biosynthetic initiation and elongation of chondroitin sulphate and is the key enzyme responsible for the selective chain assembly of chondroitin/dermatan sulphate on the linkage region tetrasaccharide common to various proteoglycans containing chondroitin/dermatan sulphate or heparin/heparan sulphate chains. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0032580 Golgi cisterna membrane
Probab=27.77 E-value=1.3e+02 Score=33.80 Aligned_cols=71 Identities=21% Similarity=0.288 Sum_probs=46.5
Q ss_pred ccccchhHHHH--------hhccccccceeeEEEeec-CCChHHH-----H-----------HHHHHHHHHHHHhhhccc
Q psy13798 7 IRFHHDKWLWK--------LCGSVWTGSRFYTHIWFK-SPLSTEL-----Y-----------QTMRRVHDAVVSVAGSLQ 61 (614)
Q Consensus 7 ~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~-~~~pqdL-----~-----------~~m~klhetfValAg~lq 61 (614)
..-|+|.||=+ -|-.-| -..||.+.=.. ...+.+| . .-|-|||.-|..+ +|+
T Consensus 10 ~s~~~Dv~lGRCI~~~~gi~Ct~~~-q~l~y~~~~~~~~~~~~~~~~~~~~~AiTlHPvk~p~~mYrLH~y~~~~--~l~ 86 (499)
T PF05679_consen 10 YSNHEDVELGRCIKKFTGISCTWSY-QGLFYHNYELNKNDFIGDLKNKEFHNAITLHPVKSPAYMYRLHRYFLSL--ELQ 86 (499)
T ss_pred CCCCchhHHHHHHHHhcCCCeeecc-cceEEEeeccCCCcccccccchhhhcceeeccCCCHHHHHHHHHHHHHH--HHH
Confidence 44588988743 255556 33455443333 2333333 2 3589999999887 899
Q ss_pred hhhHHHHHHHHHHhhhhhh
Q psy13798 62 STQPEVQYLKERHLQLRQT 80 (614)
Q Consensus 62 ~~H~~V~~~KeqyL~~Rr~ 80 (614)
+++++++.|+++-.++=+.
T Consensus 87 ~l~~~i~~L~~ei~~~s~~ 105 (499)
T PF05679_consen 87 KLRQEIAQLQREIQNMSNQ 105 (499)
T ss_pred HHHHHHHHHHHHHHHHhhh
Confidence 9999999998887766443
No 102
>PF04030 ALO: D-arabinono-1,4-lactone oxidase ; InterPro: IPR007173 This domain is specific to D-arabinono-1,4-lactone oxidase 1.1.3.37 from EC, which is involved in the final step of the D-erythroascorbic acid biosynthesis pathway [].; GO: 0003885 D-arabinono-1,4-lactone oxidase activity, 0055114 oxidation-reduction process, 0016020 membrane; PDB: 2VFU_A 2VFV_A 2VFT_A 2VFS_A 2VFR_A.
Probab=27.34 E-value=1.1e+02 Score=30.41 Aligned_cols=48 Identities=17% Similarity=0.241 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHhhhccch--hh-HHHHHHH------HHHhhhhhhhhcCCCccccc
Q psy13798 42 LYQTMRRVHDAVVSVAGSLQS--TQ-PEVQYLK------ERHLQLRQTYLKDSTNVFDV 91 (614)
Q Consensus 42 L~~~m~klhetfValAg~lq~--~H-~~V~~~K------eqyL~~Rr~~l~D~tdvFe~ 91 (614)
...-++.+-+.+..+-||.|= .| ..-+.++ ++||.+||.+ ||.+||.+
T Consensus 197 ~~~~~~~~e~~~~~~ggRpHWgK~~~~~~~~l~~~Yp~~~~F~~~r~~~--DP~g~F~n 253 (259)
T PF04030_consen 197 YEEFFRAFEQILRKYGGRPHWGKNHTLTAEQLRKLYPRLDDFLAVRKKL--DPQGVFLN 253 (259)
T ss_dssp HHHHHHHHHHHHGGGT-EE-TTS-----HHHHHHT-TTHHHHHHHHHHH---TT-TT--
T ss_pred HHHHHHHHHHHHHHcCCEECcCcCCCCCHHHHHHHCcCHHHHHHHHHHh--CCCCCCCC
Confidence 666666666666666677651 11 1222222 5678889987 99999985
No 103
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=27.32 E-value=90 Score=33.70 Aligned_cols=44 Identities=25% Similarity=0.355 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHhhhhhhhhcC
Q psy13798 41 ELYQTMRRVHDAVVSVAGSLQSTQPEVQYLKERHLQLRQTYLKD 84 (614)
Q Consensus 41 dL~~~m~klhetfValAg~lq~~H~~V~~~KeqyL~~Rr~~l~D 84 (614)
+|.+.+|++-..++.-+..-+.-++++|.+-|+..++||.+|+|
T Consensus 257 ~lD~~tr~ii~~i~~~~k~~~~~~~~~~~~~~~l~~~rk~~L~~ 300 (340)
T TIGR03575 257 QADQTLRRIISQTMREAKDEQASAYNLKLLAEELNKLKADFLED 300 (340)
T ss_pred HHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHH
Confidence 66666777666665433222345677777888888999999988
No 104
>PRK08175 aminotransferase; Validated
Probab=27.26 E-value=1e+02 Score=32.24 Aligned_cols=45 Identities=20% Similarity=0.252 Sum_probs=29.0
Q ss_pred ChHHHHHHHHHHHHHH---------HHhhhccchhhHHHHHHHHHHhhhhhhhh
Q psy13798 38 LSTELYQTMRRVHDAV---------VSVAGSLQSTQPEVQYLKERHLQLRQTYL 82 (614)
Q Consensus 38 ~pqdL~~~m~klhetf---------ValAg~lq~~H~~V~~~KeqyL~~Rr~~l 82 (614)
.|.||...|+|+.... .+++.-|+..++.+|.++|+|..-|+++.
T Consensus 251 ~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 304 (395)
T PRK08175 251 GNPELVSALARIKSYHDYGTFTPLQVAAIAALEGDQQCVRDIAEQYKRRRDVLV 304 (395)
T ss_pred CCHHHHHHHHHHHhhcccCCCcHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHH
Confidence 3568988888876521 23344455445567888888877776654
No 105
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=27.09 E-value=1.1e+02 Score=23.99 Aligned_cols=22 Identities=14% Similarity=0.333 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHhhhccch
Q psy13798 41 ELYQTMRRVHDAVVSVAGSLQS 62 (614)
Q Consensus 41 dL~~~m~klhetfValAg~lq~ 62 (614)
+|...|++||+-|..|+-.|++
T Consensus 8 ~l~~~i~~l~~~~~~i~~ev~~ 29 (63)
T PF05739_consen 8 ELEQSIQELKQMFQDIGEEVEE 29 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666665554443
No 106
>PRK09276 LL-diaminopimelate aminotransferase; Provisional
Probab=26.95 E-value=1e+02 Score=31.83 Aligned_cols=45 Identities=18% Similarity=0.198 Sum_probs=29.1
Q ss_pred ChHHHHHHHHHHHHHH---------HHhhhccchhhHHHHHHHHHHhhhhhhhh
Q psy13798 38 LSTELYQTMRRVHDAV---------VSVAGSLQSTQPEVQYLKERHLQLRQTYL 82 (614)
Q Consensus 38 ~pqdL~~~m~klhetf---------ValAg~lq~~H~~V~~~KeqyL~~Rr~~l 82 (614)
.|.||...|+++.+.. .+++.-|+..++-++.++++|...|++++
T Consensus 253 ~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~ 306 (385)
T PRK09276 253 GNADLIAGLGKVKSNVDSGVFQAIQEAGIAALNGPQEVVEELRKIYQERRDILV 306 (385)
T ss_pred CCHHHHHHHHHHHhhccCCCCHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHH
Confidence 4678988898876521 23444455555667777888877666553
No 107
>PF03792 PBC: PBC domain; InterPro: IPR005542 Pbx proteins are members of the TALE (three-amino-acid loop extension) family of atypical homeodomain proteins, whose members are characterised by a three-residue insertion in the first helix of the homeodomain involved in their interaction with Hox proteins. Examination of Pbx1 has shown that, in addition to the homeodomain, a short 16-residue C-terminal tail is essential for maximal cooperative interactions with Hox partners as well as for maximal monomeric binding of Pbx1 to DNA. The PBX domain is a bipartite acidic domain [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=26.91 E-value=1e+02 Score=31.47 Aligned_cols=42 Identities=26% Similarity=0.342 Sum_probs=33.7
Q ss_pred ecCCChHHHHHHHHHHHHHHHHhhhcc-chhhHHHHHHHHHHh
Q psy13798 34 FKSPLSTELYQTMRRVHDAVVSVAGSL-QSTQPEVQYLKERHL 75 (614)
Q Consensus 34 ~~~~~pqdL~~~m~klhetfValAg~l-q~~H~~V~~~KeqyL 75 (614)
|.--+|.|+.+.|..||.-|.++--+| |+.-|+|=.||.+||
T Consensus 148 ~RPIs~keiE~m~~~i~~Kf~~iq~qLKQstCEaVm~LRsRfl 190 (191)
T PF03792_consen 148 FRPISPKEIERMVNIIHRKFSKIQMQLKQSTCEAVMILRSRFL 190 (191)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 667789999999999999999887776 567777766666665
No 108
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=26.86 E-value=84 Score=34.66 Aligned_cols=73 Identities=27% Similarity=0.522 Sum_probs=39.9
Q ss_pred hhHHH--HhhccccccceeeEEEeec------CCChHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHhhhhhhhhc
Q psy13798 12 DKWLW--KLCGSVWTGSRFYTHIWFK------SPLSTELYQTMRRVHDAVVSVAGSLQSTQPEVQYLKERHLQLRQTYLK 83 (614)
Q Consensus 12 ~~~~~--~~~~~~~~~~~~~~~~~~~------~~~pqdL~~~m~klhetfValAg~lq~~H~~V~~~KeqyL~~Rr~~l~ 83 (614)
+.||| -|++ -|--.++|-|||=- ..+.-.|.--|||+-+-=| |++-.+-..++..|.+|-.-.+.+|=
T Consensus 89 n~~lwlaLl~g-~~~~~k~~WhIWGaDLYe~~~~~k~rlfy~lRr~aq~rv---g~V~at~GDl~~~~q~~~~~~~~~ly 164 (360)
T PF07429_consen 89 NPWLWLALLFG-KIKLKKCYWHIWGADLYEDSRSLKFRLFYFLRRLAQKRV---GHVFATRGDLAYFQQRYPRVPASLLY 164 (360)
T ss_pred cHHHHHHHHcC-CccccceEEEEeCchhhccccccchhHHHHHHHHHHhhc---CeEEEEcchHHHHHHHcCCCCceEEE
Confidence 34555 4444 46678999999932 2233334334455444333 45555555666666666544455566
Q ss_pred CCCcc
Q psy13798 84 DSTNV 88 (614)
Q Consensus 84 D~tdv 88 (614)
.||++
T Consensus 165 fPt~m 169 (360)
T PF07429_consen 165 FPTRM 169 (360)
T ss_pred cCCCC
Confidence 66654
No 109
>PF01153 Glypican: Glypican; InterPro: IPR001863 Glypicans [, ] are a family of heparan sulphate proteoglycans which are anchored to cell membranes by a glycosylphosphatidylinositol (GPI) linkage. Six members (GPC1-6) are known in vertebrates []. Structurally, these proteins consist of three separate domains: A signal sequence; An extracellular domain of about 500 residues that contains 12 conserved cysteines probably involved in disulphide bonds and which also contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A C-terminal hydrophobic region which is post-translationally removed after formation of the GPI-anchor. ; GO: 0043395 heparan sulfate proteoglycan binding, 0005578 proteinaceous extracellular matrix, 0016020 membrane; PDB: 3ODN_A 4AD7_A 4ACR_C.
Probab=26.64 E-value=87 Score=35.88 Aligned_cols=46 Identities=24% Similarity=0.326 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHhhhhhhhhcCCCcc
Q psy13798 41 ELYQTMRRVHDAVVSVAGSLQSTQPEVQYLKERHLQLRQTYLKDSTNV 88 (614)
Q Consensus 41 dL~~~m~klhetfValAg~lq~~H~~V~~~KeqyL~~Rr~~l~D~tdv 88 (614)
=|..+-++||+.|+-.-++|-.-| -+..+|-|-.+|+||++.+.||
T Consensus 106 ll~~se~~~~~~F~~~Y~~ly~~~--~~~~~~lf~~l~~y~~g~~~~l 151 (557)
T PF01153_consen 106 LLRQSENSLHSMFSRTYGSLYPQN--RPIFQDLFTDLRRYYLGSNVNL 151 (557)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHCT--HHHHHHHHHHHHHHHCCS-S-H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHccCCCCH
Confidence 355666677777777777665554 4567888999999999998776
No 110
>PRK13248 phycoerythrobilin:ferredoxin oxidoreductase; Provisional
Probab=26.56 E-value=1.1e+02 Score=32.30 Aligned_cols=54 Identities=20% Similarity=0.339 Sum_probs=30.6
Q ss_pred EeecCCChHH--------HHHHHHHHHHH---HHHhhhccchhh-HHHHHHHHHHhhhhhhhhcCCCc
Q psy13798 32 IWFKSPLSTE--------LYQTMRRVHDA---VVSVAGSLQSTQ-PEVQYLKERHLQLRQTYLKDSTN 87 (614)
Q Consensus 32 ~~~~~~~pqd--------L~~~m~klhet---fValAg~lq~~H-~~V~~~KeqyL~~Rr~~l~D~td 87 (614)
||.+-+..+| |-.+.+...+. +|.-|-.+.... ++|+...+.|+.||+. |||+.
T Consensus 165 Lf~R~~~~~e~~~~ie~~~~~af~~YL~~y~~l~~~a~~~~~~~~~~i~~~Q~~Y~~yqae--nDpar 230 (253)
T PRK13248 165 IWSKLPKEERSDFLIENQLYTSFKEYLDLYLEILFESKEVNIGLQKELINGQNNYLNYRRD--NDPAR 230 (253)
T ss_pred EEEecCCcccchhhHHHHHHHHHHHHHHHHHHHHHhCCCCCcccHHHHHHHHHHHHHHHHH--cCcHH
Confidence 6777555544 44444433333 333344443222 3566777889999986 78764
No 111
>PHA02046 hypothetical protein
Probab=26.54 E-value=56 Score=30.18 Aligned_cols=31 Identities=23% Similarity=0.277 Sum_probs=20.6
Q ss_pred hhhccchhhHHH-HHHHHHHhhhhh--------------hhhcCCC
Q psy13798 56 VAGSLQSTQPEV-QYLKERHLQLRQ--------------TYLKDST 86 (614)
Q Consensus 56 lAg~lq~~H~~V-~~~KeqyL~~Rr--------------~~l~D~t 86 (614)
-+-||-++|+.| +.++|+...||+ .|||||-
T Consensus 6 t~~rLg~LH~~~a~~l~~e~~~~re~eiPlpaad~aa~~KFLKDNn 51 (99)
T PHA02046 6 SAERLGELHELVCTAIEREFKWYRENDIPLPAADKAAIAKFLKDNE 51 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHhhcCC
Confidence 345666677766 456777777776 4788873
No 112
>PLN02703 beta-fructofuranosidase
Probab=26.51 E-value=17 Score=41.95 Aligned_cols=44 Identities=18% Similarity=0.154 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHhhhccchhhHHHHHHHHHHhhhhhhhhcCCC
Q psy13798 43 YQTMRRVHDAVVSVAGSLQSTQPEVQYLKERHLQLRQTYLKDST 86 (614)
Q Consensus 43 ~~~m~klhetfValAg~lq~~H~~V~~~KeqyL~~Rr~~l~D~t 86 (614)
+.+++.|++++|-..++...+=......++..|||++.++||..
T Consensus 134 ~eA~elL~~s~v~~~g~pvGtvAA~d~~~~~~lNY~qVFiRDfV 177 (618)
T PLN02703 134 DEAWDLLRQSVVFYCGSPIGTIAANDPSSTSVLNYDQVFIRDFI 177 (618)
T ss_pred HHHHHHHHHhhhhhcCccceeEeccCCccccccCCCceeecccH
Confidence 46789999999999999888766666655566999999999964
No 113
>TIGR03592 yidC_oxa1_cterm membrane protein insertase, YidC/Oxa1 family, C-terminal domain. This model describes full-length from some species, and the C-terminal region only from other species, of the YidC/Oxa1 family of proteins. This domain appears to be univeral among bacteria (although absent from Archaea). The well-characterized YidC protein from Escherichia coli and its close homologs contain a large N-terminal periplasmic domain in addition to the region modeled here.
Probab=26.18 E-value=60 Score=31.34 Aligned_cols=19 Identities=21% Similarity=0.401 Sum_probs=11.3
Q ss_pred hccchhhHHHHHHHHHHhh
Q psy13798 58 GSLQSTQPEVQYLKERHLQ 76 (614)
Q Consensus 58 g~lq~~H~~V~~~KeqyL~ 76 (614)
.|++.+..+++++||+|.+
T Consensus 29 ~km~~i~P~~~~i~~k~k~ 47 (181)
T TIGR03592 29 RKMQELQPKLKEIQEKYKD 47 (181)
T ss_pred HHHHHhhHHHHHHHHHHHh
Confidence 4555566666666666654
No 114
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=25.93 E-value=86 Score=27.47 Aligned_cols=42 Identities=12% Similarity=0.225 Sum_probs=22.0
Q ss_pred chhHH-----HHhhccccccceeeEEEeecCCC-hHHHHHHHHHHHHHHH
Q psy13798 11 HDKWL-----WKLCGSVWTGSRFYTHIWFKSPL-STELYQTMRRVHDAVV 54 (614)
Q Consensus 11 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~-pqdL~~~m~klhetfV 54 (614)
|++|| .+|+- +.|......+|-.... -++....|++|||.+-
T Consensus 6 ~~~w~~~~~~v~l~~--~~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~ 53 (126)
T cd03012 6 ILQWLNTDKPLSLAQ--LRGKVVLLDFWTYCCINCLHTLPYLTDLEQKYK 53 (126)
T ss_pred hhhhhcCCCccCHHH--hCCCEEEEEEECCCCccHHHHHHHHHHHHHHcC
Confidence 67788 44442 3454344444433222 2344556788888763
No 115
>PF14244 UBN2_3: gag-polypeptide of LTR copia-type
Probab=25.92 E-value=47 Score=30.72 Aligned_cols=36 Identities=11% Similarity=0.179 Sum_probs=21.8
Q ss_pred HHHHHHHHHHh--hhccchhhHHHHHHHHHHhhhhhhh
Q psy13798 46 MRRVHDAVVSV--AGSLQSTQPEVQYLKERHLQLRQTY 81 (614)
Q Consensus 46 m~klhetfVal--Ag~lq~~H~~V~~~KeqyL~~Rr~~ 81 (614)
..+|+|.|... +.|+..++.++..+|...++.++||
T Consensus 88 W~~L~~~f~~~~~~~r~~~L~~~l~~~kq~~~sv~ey~ 125 (152)
T PF14244_consen 88 WDALKERFSQKSNASRVFQLRNELHSLKQGDKSVTEYF 125 (152)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHHHhhCCCcHHHHH
Confidence 34444444322 4677777778877776565555555
No 116
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=25.90 E-value=60 Score=26.04 Aligned_cols=15 Identities=13% Similarity=0.264 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHH
Q psy13798 40 TELYQTMRRVHDAVV 54 (614)
Q Consensus 40 qdL~~~m~klhetfV 54 (614)
+|+..++++|||.|+
T Consensus 50 ~~~~~av~~Lh~~f~ 64 (65)
T cd04918 50 SEAEGCVQALHKSFF 64 (65)
T ss_pred HHHHHHHHHHHHHHh
Confidence 788999999999985
No 117
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase. This model represents an uncharacterized plant-specific family of FAD-dependent oxidoreductases. At least seven distinct members are found in Arabidopsis thaliana. The family shows considerable sequence similarity to three different enzymes of ascorbic acid biosynthesis: L-galactono-1,4-lactone dehydrogenase (EC 1.3.2.3) from higher plants, D-arabinono-1,4-lactone oxidase (EC 1.1.3.37 from Saccharomyces cerevisiae, and L-gulonolactone oxidase (EC 1.1.3.8) from mouse, as well as to a bacterial sorbitol oxidase. The class of compound acted on by members of this family is unknown.
Probab=25.79 E-value=70 Score=36.59 Aligned_cols=79 Identities=14% Similarity=0.247 Sum_probs=43.3
Q ss_pred ccccc--hhHHHHhhccccccceeeEEE-eecCCCh---HHHHHHHHHHHH-HHHHhhhccc------hhhHHHHHH---
Q psy13798 7 IRFHH--DKWLWKLCGSVWTGSRFYTHI-WFKSPLS---TELYQTMRRVHD-AVVSVAGSLQ------STQPEVQYL--- 70 (614)
Q Consensus 7 ~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~p---qdL~~~m~klhe-tfValAg~lq------~~H~~V~~~--- 70 (614)
|||-- |-||=. --..-|.|| |++..-+ ---...++.|-+ +|...-+|=| ..++.|+.+
T Consensus 410 vR~v~aDd~wLSp------~rds~~i~~~~~~~~~~~~~~~~~~~f~~~E~i~l~~yggRPHWGK~h~~~~~~l~~~YP~ 483 (557)
T TIGR01677 410 IRYVKASPAYLGK------EEDAVDFDFTYYRAKDPLTPRLYEDVIEEIEQMAFFKYGALPHWGKNRNLAFDGVIRKYPN 483 (557)
T ss_pred EEEecCCccccCC------CCceEEEEEEEecCCCCcccchHHHHHHHHHHHHHhhcCCCCCccccccchHHHHHHhCCC
Confidence 44443 556644 123455555 5553321 002333445555 3666677777 222333332
Q ss_pred HHHHhhhhhhhhcCCCccccccc
Q psy13798 71 KERHLQLRQTYLKDSTNVFDVER 93 (614)
Q Consensus 71 KeqyL~~Rr~~l~D~tdvFe~~~ 93 (614)
=++||.+||.+ ||.+||.++-
T Consensus 484 ~~dF~alR~~~--DP~g~F~N~y 504 (557)
T TIGR01677 484 ADKFLKVKDSY--DPKGLFSSEW 504 (557)
T ss_pred HHHHHHHHHhc--CCCCccCCHH
Confidence 36789999987 9999999653
No 118
>PRK14155 heat shock protein GrpE; Provisional
Probab=25.67 E-value=61 Score=32.93 Aligned_cols=26 Identities=0% Similarity=0.015 Sum_probs=11.3
Q ss_pred ccchhhHHHHHHHHHHhhhhhhhhcC
Q psy13798 59 SLQSTQPEVQYLKERHLQLRQTYLKD 84 (614)
Q Consensus 59 ~lq~~H~~V~~~KeqyL~~Rr~~l~D 84 (614)
++.++.+++..++-.|-||||+.-||
T Consensus 28 e~~elkd~~lR~~AefeN~RKR~~kE 53 (208)
T PRK14155 28 EVAALKDQALRYAAEAENTKRRAERE 53 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444555554443
No 119
>PRK00846 hypothetical protein; Provisional
Probab=25.51 E-value=1.4e+02 Score=26.46 Aligned_cols=43 Identities=16% Similarity=0.184 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHhhhccchhhHHHHHHHHHHhhhhhhhhcCCC
Q psy13798 44 QTMRRVHDAVVSVAGSLQSTQPEVQYLKERHLQLRQTYLKDST 86 (614)
Q Consensus 44 ~~m~klhetfValAg~lq~~H~~V~~~KeqyL~~Rr~~l~D~t 86 (614)
..+..|.+.++..--.+..+.++|+.++|+....+-..+.++.
T Consensus 27 ~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~~s~~~~~~ 69 (77)
T PRK00846 27 QALTELSEALADARLTGARNAELIRHLLEDLGKVRSTLFADPA 69 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCC
Confidence 4566777888777777777888888888877766644444443
No 120
>PRK12805 flagellin; Provisional
Probab=25.48 E-value=1.3e+02 Score=31.24 Aligned_cols=52 Identities=12% Similarity=0.151 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHhhh------ccchhhHHHHHHHHHHhhhhhhhhcCCCccccc
Q psy13798 40 TELYQTMRRVHDAVVSVAG------SLQSTQPEVQYLKERHLQLRQTYLKDSTNVFDV 91 (614)
Q Consensus 40 qdL~~~m~klhetfValAg------~lq~~H~~V~~~KeqyL~~Rr~~l~D~tdvFe~ 91 (614)
+++...|+|++|-.|..+- ..+.|-++|+.++|+.+.+-..-=-+-..||+.
T Consensus 81 ~~i~~~l~r~rel~v~a~ngt~s~~dr~ai~~Ei~~l~~~i~~~an~~~~nG~ylf~G 138 (287)
T PRK12805 81 SSMSSILQRMRQLAVQSSNGSFSDEDRKQYTAEFGSLIKELDHVADTTNYNNIKLLDQ 138 (287)
T ss_pred HHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeeecCC
Confidence 5778889999998887753 567899999999999887765433344456664
No 121
>PRK13777 transcriptional regulator Hpr; Provisional
Probab=25.38 E-value=61 Score=32.10 Aligned_cols=52 Identities=17% Similarity=0.160 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHhhhhhhhhcCCCccccc
Q psy13798 40 TELYQTMRRVHDAVVSVAGSLQSTQPEVQYLKERHLQLRQTYLKDSTNVFDV 91 (614)
Q Consensus 40 qdL~~~m~klhetfValAg~lq~~H~~V~~~KeqyL~~Rr~~l~D~tdvFe~ 91 (614)
.++...++++++.+.+-.-.|+.+|.+.+...|-.-=+||.|=.|-.||||.
T Consensus 114 ~~l~~~~~~~e~~~~~~~s~~~~l~~~~~e~~~l~~ll~~iy~~~~~~~~~~ 165 (185)
T PRK13777 114 LETMEEYDPENNSVFNGALPLRELYGKFPEFIELMAIVRNIYGDDFIDIFEK 165 (185)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHhhhhHHHHHHHHHHHHHhCcHHHHHHHH
Confidence 4566677777777777777789999999999999999999999999999983
No 122
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=25.37 E-value=51 Score=34.14 Aligned_cols=33 Identities=18% Similarity=0.195 Sum_probs=19.3
Q ss_pred hhhccchhhHHHHHHHHHHhh-hhhhhhcCCCcc
Q psy13798 56 VAGSLQSTQPEVQYLKERHLQ-LRQTYLKDSTNV 88 (614)
Q Consensus 56 lAg~lq~~H~~V~~~KeqyL~-~Rr~~l~D~tdv 88 (614)
|+--+-.||..|+..-++||+ +||++.--|+.-
T Consensus 224 l~~~~~~iH~sv~~~s~~y~~~~~r~~yvTP~sy 257 (268)
T PF12780_consen 224 LAEIMVFIHQSVEEISRKYLQELRRYNYVTPKSY 257 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCS------HHHH
T ss_pred HHHHHHHHhccchHhHHHHHHHcCCcceECcHHH
Confidence 444456789999998888885 687766555443
No 123
>PF08217 DUF1712: Fungal domain of unknown function (DUF1712); InterPro: IPR013176 The function of this fungal family of proteins is unknown.
Probab=25.28 E-value=75 Score=36.76 Aligned_cols=44 Identities=18% Similarity=0.216 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHhhhhhhhhcC
Q psy13798 41 ELYQTMRRVHDAVVSVAGSLQSTQPEVQYLKERHLQLRQTYLKD 84 (614)
Q Consensus 41 dL~~~m~klhetfValAg~lq~~H~~V~~~KeqyL~~Rr~~l~D 84 (614)
-|...|++.|+.|+.+-|.++++++.++.+|++--.|-..||++
T Consensus 98 ~L~~~L~~~Y~~F~L~hGsfs~~l~~r~~L~~~L~~F~~~fl~~ 141 (604)
T PF08217_consen 98 YLLSVLKQAYSMFRLFHGSFSSLLEGREKLKDRLEDFFSRFLQT 141 (604)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHhcccHHHHHHHHHHHHHHHHHh
Confidence 48999999999999999999999988887777666665555543
No 124
>PF15186 TEX13: Testis-expressed sequence 13 protein family
Probab=25.25 E-value=1.4e+02 Score=29.61 Aligned_cols=45 Identities=33% Similarity=0.347 Sum_probs=31.8
Q ss_pred ChHHHHHHHHHHHHHHH----HhhhccchhhHHHH-HHHHHHhhhhhhhhc
Q psy13798 38 LSTELYQTMRRVHDAVV----SVAGSLQSTQPEVQ-YLKERHLQLRQTYLK 83 (614)
Q Consensus 38 ~pqdL~~~m~klhetfV----alAg~lq~~H~~V~-~~KeqyL~~Rr~~l~ 83 (614)
..+.|..-|+||.|.=- -.|-|||..|.+++ .|||+=| ||..+|.
T Consensus 100 a~~aLas~L~~Lr~q~e~e~keaa~qL~~~~a~L~~v~~ERD~-Lr~kLlq 149 (152)
T PF15186_consen 100 AAWALASELKRLREQREMERKEAAFQLQLTQAALQEVQKERDL-LRWKLLQ 149 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHh
Confidence 35667777888877766 77889999998875 4566654 5666553
No 125
>PRK12584 flagellin A; Reviewed
Probab=25.18 E-value=95 Score=35.23 Aligned_cols=40 Identities=13% Similarity=0.126 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHhhh------ccchhhHHHHHHHHHHhhhhh
Q psy13798 40 TELYQTMRRVHDAVVSVAG------SLQSTQPEVQYLKERHLQLRQ 79 (614)
Q Consensus 40 qdL~~~m~klhetfValAg------~lq~~H~~V~~~KeqyL~~Rr 79 (614)
+|+...|+||+|..|..+- .++.|.++|+.|+||-+.+=.
T Consensus 83 ~~i~~~Lqr~relavqaangt~s~~dR~ai~~Ei~~L~~ei~~ian 128 (510)
T PRK12584 83 DEQLKILDTIKVKATQAAQDGQTTESRKAIQSDIVRLIQGLDNIGN 128 (510)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6788889999998887653 567888889988888776644
No 126
>PRK14162 heat shock protein GrpE; Provisional
Probab=25.04 E-value=63 Score=32.54 Aligned_cols=35 Identities=6% Similarity=0.149 Sum_probs=21.5
Q ss_pred HHHHHhhhccchhhHHHHHHHHHHhhhhhhhhcCC
Q psy13798 51 DAVVSVAGSLQSTQPEVQYLKERHLQLRQTYLKDS 85 (614)
Q Consensus 51 etfValAg~lq~~H~~V~~~KeqyL~~Rr~~l~D~ 85 (614)
+.+..|-.++..+.+++..++..|=||||++-||-
T Consensus 46 ~~l~~l~~e~~elkd~~lR~~AEfeN~rkR~~kE~ 80 (194)
T PRK14162 46 KEIADLKAKNKDLEDKYLRSQAEIQNMQNRYAKER 80 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555666666666666666667887765553
No 127
>PRK07682 hypothetical protein; Validated
Probab=24.87 E-value=1.1e+02 Score=31.53 Aligned_cols=44 Identities=11% Similarity=0.229 Sum_probs=27.5
Q ss_pred ChHHHHHHHHHHHHHH---------HHhhhccchhhHHHHHHHHHHhhhhhhh
Q psy13798 38 LSTELYQTMRRVHDAV---------VSVAGSLQSTQPEVQYLKERHLQLRQTY 81 (614)
Q Consensus 38 ~pqdL~~~m~klhetf---------ValAg~lq~~H~~V~~~KeqyL~~Rr~~ 81 (614)
.|.||...|++++..- .+++.-|++-++.++.++++|...|+++
T Consensus 240 ~~~~~i~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~ 292 (378)
T PRK07682 240 APVYFSEAMLKIHQYSMMCAPTMAQFAALEALRAGNDDVIRMRDSYRKRRNFF 292 (378)
T ss_pred cCHHHHHHHHHHHHhhccCCCHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHH
Confidence 4678888888877531 2233335444455777778777766554
No 128
>TIGR01765 tspaseT_teng_N transposase, putative, N-terminal domain. This model represents the N-terminal region of a family of putative transposases found in the largest copy number in Thermoanaerobacter tengcongensis. The three homologs in Bacillus anthracis are each split into two ORFs and This model represents the upstream ORF.
Probab=24.86 E-value=1.8e+02 Score=24.29 Aligned_cols=43 Identities=19% Similarity=0.119 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHhhhccchh--hH--HHHHHHHHHhhhhhhhh
Q psy13798 40 TELYQTMRRVHDAVVSVAGSLQST--QP--EVQYLKERHLQLRQTYL 82 (614)
Q Consensus 40 qdL~~~m~klhetfValAg~lq~~--H~--~V~~~KeqyL~~Rr~~l 82 (614)
+.|...|++.-+..--..-++=+= .. +++.||.-|.+||..+.
T Consensus 14 ~~L~~tm~~f~~A~n~~~~~~~e~~~~~~~k~~L~~l~y~~~re~~~ 60 (73)
T TIGR01765 14 EYLLDLIRAFSSAVNFVIKRLLEGKSHSELKKELQRLYYLNYREDAP 60 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHhhHHHHHHH
Confidence 446666666665554444444222 22 66788999999998663
No 129
>PRK12803 flagellin; Provisional
Probab=24.80 E-value=1e+02 Score=33.23 Aligned_cols=51 Identities=14% Similarity=0.205 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHhh------hccchhhHHHHHHHHHHhhhhhhhhcCCCcccc
Q psy13798 40 TELYQTMRRVHDAVVSVA------GSLQSTQPEVQYLKERHLQLRQTYLKDSTNVFD 90 (614)
Q Consensus 40 qdL~~~m~klhetfValA------g~lq~~H~~V~~~KeqyL~~Rr~~l~D~tdvFe 90 (614)
+++...|+|+.|-.|.-+ ..++.|.++|+.++|+.+.+-+.-=-+-.+||+
T Consensus 81 ~~i~~~LqrirELavqA~Ngt~s~~dR~ai~~Ei~qL~~~i~~ian~t~fnG~~lf~ 137 (335)
T PRK12803 81 NEVEKVLVRMKELAVQSGNGTYSDADRGSIQIEIEQLTDEINRIADQAQYNQMHMLS 137 (335)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCcCCeeecc
Confidence 577888999999887664 367889999999999998886632223345565
No 130
>PRK11534 DNA-binding transcriptional regulator CsiR; Provisional
Probab=24.75 E-value=48 Score=32.04 Aligned_cols=68 Identities=12% Similarity=0.255 Sum_probs=39.3
Q ss_pred hhHHHHhhccccccceeeEEEeecCC--ChHHHHHHHHHHHHHHHH-hhhccchhhHHHHHHHHHHhhhhhhhh
Q psy13798 12 DKWLWKLCGSVWTGSRFYTHIWFKSP--LSTELYQTMRRVHDAVVS-VAGSLQSTQPEVQYLKERHLQLRQTYL 82 (614)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~pqdL~~~m~klhetfVa-lAg~lq~~H~~V~~~KeqyL~~Rr~~l 82 (614)
...|+.++-.+|.-.+.|.++|++.. .+.++.. ..+-|+.+|. |.. ....+..+.+++++.+.++.+.
T Consensus 148 N~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~eH~~Il~Ai~~--~D~~~A~~~~~~Hi~~~~~~~~ 218 (224)
T PRK11534 148 SHYLLQMRERLFDLAARYRFIWLRRTVLSVEMLED-KHDQHQTLTAAILA--RDTARASELMRQHLLTPIPIIQ 218 (224)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHH-HHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666665555555666532 2333333 3456777664 332 3556677778888887777664
No 131
>TIGR03036 trp_2_3_diox tryptophan 2,3-dioxygenase. Members of this family are tryptophan 2,3-dioxygenase, as confirmed by several experimental characterizations, and by conserved operon structure for many of the other members. This enzyme represents the first of a two-step degradation to L-kynurenine, and a three-step pathway (via kynurenine) to anthranilate plus alanine.
Probab=24.59 E-value=44 Score=35.21 Aligned_cols=72 Identities=17% Similarity=0.199 Sum_probs=42.6
Q ss_pred CCCcccccchhHHHHhhccccccceeeEEEeecCCChHHHHHHHHHHHHHHHHh-hhccchhhHHHHHHH----------
Q psy13798 3 VNSPIRFHHDKWLWKLCGSVWTGSRFYTHIWFKSPLSTELYQTMRRVHDAVVSV-AGSLQSTQPEVQYLK---------- 71 (614)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pqdL~~~m~klhetfVal-Ag~lq~~H~~V~~~K---------- 71 (614)
.-.|+--|||.-|+..+--|. -+|||-- =.||..+++.|.+-=+.. ..+|.-|....+.+.
T Consensus 20 lQ~p~s~~hDE~lFIv~HQ~~-------ELwfkli-l~El~~a~~~l~~~~~~~a~~~L~Rv~~i~~~L~~~~~vL~tMt 91 (264)
T TIGR03036 20 AQHPLSDDHDEMLFIVQHQTS-------ELWMKLI-LHELRAARRAIRADDLPPAFKMLARVSRIQEQLNQAWDVLATMT 91 (264)
T ss_pred cCCCCCCCCchhhhHHHHHHH-------HHHHHHH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 345666689999998876653 4788854 367777777665322222 223333333333333
Q ss_pred -HHHhhhhhhhh
Q psy13798 72 -ERHLQLRQTYL 82 (614)
Q Consensus 72 -eqyL~~Rr~~l 82 (614)
++|+.+|.++-
T Consensus 92 p~df~~FR~~Lg 103 (264)
T TIGR03036 92 PAEYSEFRDALG 103 (264)
T ss_pred HHHHHHHHHHhC
Confidence 47888888753
No 132
>PF00831 Ribosomal_L29: Ribosomal L29 protein; InterPro: IPR001854 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L29 is one of the proteins from the large ribosomal subunit. L29 belongs to a family of ribosomal proteins of 63 to 138 amino-acid residues which, on the basis of sequence similarities [], groups: Red algal L29. Bacterial L29. Mammalian L35 Caenorhabditis elegans L35 (ZK652.4). Yeast L35. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 1VSP_W 3MS1_Y 3MRZ_Y 3F1H_2 3PYT_Y 3PYO_Y 3D5D_2 3D5B_2 3PYR_Y 1VSA_W ....
Probab=24.51 E-value=56 Score=26.66 Aligned_cols=22 Identities=23% Similarity=0.220 Sum_probs=18.2
Q ss_pred cchhhHHHHHHHHHHhhhhhhh
Q psy13798 60 LQSTQPEVQYLKERHLQLRQTY 81 (614)
Q Consensus 60 lq~~H~~V~~~KeqyL~~Rr~~ 81 (614)
..+++++++.+|+.|+++|=+.
T Consensus 9 ~~eL~~~l~elk~eL~~Lr~q~ 30 (58)
T PF00831_consen 9 DEELQEKLEELKKELFNLRFQK 30 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999999553
No 133
>COG5043 MRS6 Vacuolar protein sorting-associated protein [Intracellular trafficking and secretion]
Probab=24.44 E-value=12 Score=48.02 Aligned_cols=42 Identities=26% Similarity=0.352 Sum_probs=29.8
Q ss_pred CCCcccccchhHHHHhhccccccceeeEEEeecCCChHHHHH
Q psy13798 3 VNSPIRFHHDKWLWKLCGSVWTGSRFYTHIWFKSPLSTELYQ 44 (614)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pqdL~~ 44 (614)
|-.||.-.|.+|-||..-..-.-.|-|+|||-|.-+-.+|+.
T Consensus 335 vl~~ihek~y~~tw~~~ke~Ce~Rr~y~Ki~rkk~l~~qlsa 376 (2552)
T COG5043 335 VLDSIHEKRYHWTWKYFKERCEDRRAYMKIIRKKYLNEQLSA 376 (2552)
T ss_pred ecCHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 345777788999999444444567899999987666555554
No 134
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=24.41 E-value=1e+02 Score=35.27 Aligned_cols=41 Identities=7% Similarity=0.237 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHhhhhhh
Q psy13798 40 TELYQTMRRVHDAVVSVAGSLQSTQPEVQYLKERHLQLRQT 80 (614)
Q Consensus 40 qdL~~~m~klhetfValAg~lq~~H~~V~~~KeqyL~~Rr~ 80 (614)
+|+..-+.+|.|.+..|..|++++.++++.+|++...+|+.
T Consensus 89 ~~~~~~~~~~~~~i~~l~~~~~~L~~~~~~l~~~~~~l~~~ 129 (646)
T PRK05771 89 KDVEEELEKIEKEIKELEEEISELENEIKELEQEIERLEPW 129 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 45566788888999999999999999999999888888754
No 135
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=24.36 E-value=65 Score=26.19 Aligned_cols=31 Identities=16% Similarity=0.289 Sum_probs=20.6
Q ss_pred ccccceeeEEEeecCCChHHHHHHHHHHHHHHH
Q psy13798 22 VWTGSRFYTHIWFKSPLSTELYQTMRRVHDAVV 54 (614)
Q Consensus 22 ~~~~~~~~~~~~~~~~~pqdL~~~m~klhetfV 54 (614)
++++.+ -..|++--+ -+|...++|+||+.|+
T Consensus 35 i~~~~s-~~~is~~V~-~~~~~~av~~Lh~~f~ 65 (66)
T cd04915 35 AHQSMR-NVDVQFVVD-RDDYDNAIKALHAALV 65 (66)
T ss_pred EEecCC-eeEEEEEEE-HHHHHHHHHHHHHHHh
Confidence 455543 234544333 3799999999999986
No 136
>PRK14142 heat shock protein GrpE; Provisional
Probab=24.14 E-value=52 Score=34.05 Aligned_cols=10 Identities=30% Similarity=0.491 Sum_probs=4.7
Q ss_pred hhhhhhhhcC
Q psy13798 75 LQLRQTYLKD 84 (614)
Q Consensus 75 L~~Rr~~l~D 84 (614)
-||||+.-||
T Consensus 64 EN~RKR~erE 73 (223)
T PRK14142 64 ANYRKRALRD 73 (223)
T ss_pred HHHHHHHHHH
Confidence 3555554443
No 137
>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H.
Probab=24.14 E-value=2.4e+02 Score=23.68 Aligned_cols=46 Identities=15% Similarity=0.253 Sum_probs=27.6
Q ss_pred CCChHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHhhhhhhhhcCCCc
Q psy13798 36 SPLSTELYQTMRRVHDAVVSVAGSLQSTQPEVQYLKERHLQLRQTYLKDSTN 87 (614)
Q Consensus 36 ~~~pqdL~~~m~klhetfValAg~lq~~H~~V~~~KeqyL~~Rr~~l~D~td 87 (614)
..|++|=..-|++|++.+.. +++.++++++..+++ |++.+.+|+.|
T Consensus 40 l~Lt~eQ~~~l~~~~~~~~~---~~~~~r~~~~~~r~~---l~~ll~~~~~D 85 (125)
T PF13801_consen 40 LNLTPEQQAKLRALMDEFRQ---EMRALRQELRAARQE---LRALLAAPPPD 85 (125)
T ss_dssp S-TTHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH---HHHHHCCSSS-
T ss_pred cCCCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH---HHHHHcCCCCC
Confidence 46778878888888877764 444555555444444 45566666655
No 138
>PF10504 DUF2452: Protein of unknown function (DUF2452); InterPro: IPR019534 This entry contains proteins that have no known function.
Probab=24.07 E-value=1.3e+02 Score=29.87 Aligned_cols=44 Identities=11% Similarity=0.271 Sum_probs=28.3
Q ss_pred hHHHHH---HHHHHHHHHHHhh-hccchhhHHHHHHHHHHhhhhhhhh
Q psy13798 39 STELYQ---TMRRVHDAVVSVA-GSLQSTQPEVQYLKERHLQLRQTYL 82 (614)
Q Consensus 39 pqdL~~---~m~klhetfValA-g~lq~~H~~V~~~KeqyL~~Rr~~l 82 (614)
|.||-. .++|.-+...+-| .+|+-|-++++.|||||-.+++.+=
T Consensus 29 ~~dlv~la~~iq~Ad~~~~~~t~~kL~~I~eQi~~Lq~QA~~ile~~~ 76 (159)
T PF10504_consen 29 PFDLVDLAQQIQKADSAMRANTCNKLEVIAEQIRFLQEQARKILEEAE 76 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455443 3444444333332 4788899999999999988877543
No 139
>PF15169 DUF4564: Domain of unknown function (DUF4564)
Probab=24.02 E-value=32 Score=34.74 Aligned_cols=70 Identities=23% Similarity=0.334 Sum_probs=37.0
Q ss_pred cccccchhHHHHhhc---ccccc----ceeeEEEeecCC-----ChHHHHHHHHHH----HHHHHHhhhccchhhHHHHH
Q psy13798 6 PIRFHHDKWLWKLCG---SVWTG----SRFYTHIWFKSP-----LSTELYQTMRRV----HDAVVSVAGSLQSTQPEVQY 69 (614)
Q Consensus 6 ~~~~~~~~~~~~~~~---~~~~~----~~~~~~~~~~~~-----~pqdL~~~m~kl----hetfValAg~lq~~H~~V~~ 69 (614)
|.-||+|.|+||+|- -++.+ ...|.-|.=|.. ----|.+.|.++ ||-.|+.-.+|+++ .||+
T Consensus 37 ~~yys~d~~~wK~fyv~~c~fva~~n~edwee~iFdK~kg~V~lk~~nl~~~il~~~~~g~~~vV~~L~~i~~v--~Vee 114 (187)
T PF15169_consen 37 AAYYSSDSLLWKLFYVAGCLFVALQNMEDWEEAIFDKSKGKVTLKYFNLYEKILTLWKQGHEQVVVDLSEIRDV--NVEE 114 (187)
T ss_pred eeeecCCchHHHHHHHHHHHHHHHhcchhhhheeEeccCCEEEEEeeeHHHHHHHHhhcCCCeEEEEhhHcceE--EEEE
Confidence 457999999999862 11111 112222222211 011233344443 77777666666544 5777
Q ss_pred HHHHHhhh
Q psy13798 70 LKERHLQL 77 (614)
Q Consensus 70 ~KeqyL~~ 77 (614)
.|-+||.-
T Consensus 115 e~vry~g~ 122 (187)
T PF15169_consen 115 EKVRYFGK 122 (187)
T ss_pred EeeccCCc
Confidence 77777765
No 140
>PF09749 HVSL: Uncharacterised conserved protein; InterPro: IPR019146 This entry is of proteins of approximately 300 residues conserved from plants to humans. It contains two conserved motifs, HxSL and FHVSL. The function is unknown.
Probab=23.87 E-value=1.3e+02 Score=30.31 Aligned_cols=32 Identities=16% Similarity=0.316 Sum_probs=22.9
Q ss_pred eeeEEEeecCCChHHHHHHHHHHHHHHHHhhh
Q psy13798 27 RFYTHIWFKSPLSTELYQTMRRVHDAVVSVAG 58 (614)
Q Consensus 27 ~~~~~~~~~~~~pqdL~~~m~klhetfValAg 58 (614)
.|.+|||+.-+.+.++...|++|-+.+-.+-.
T Consensus 39 nw~t~vYi~~~~~~~~~~~l~~~i~~~~~~~~ 70 (239)
T PF09749_consen 39 NWPTHVYIEWPPSEDQRELLEKLISKANSICP 70 (239)
T ss_pred ccceEEEEEecCcHHHHHHHHHHHHHHHhhhh
Confidence 46899999988887777777666665544443
No 141
>KOG3062|consensus
Probab=23.79 E-value=66 Score=34.19 Aligned_cols=32 Identities=13% Similarity=0.268 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHhhhccchhhHHHHHHHHHHhhh
Q psy13798 45 TMRRVHDAVVSVAGSLQSTQPEVQYLKERHLQL 77 (614)
Q Consensus 45 ~m~klhetfValAg~lq~~H~~V~~~KeqyL~~ 77 (614)
-||||-+.||-+- ++|.+.+.++++|+.|+.|
T Consensus 243 eL~RLRrqFI~~~-~~~~~~t~~~q~~~lFv~y 274 (281)
T KOG3062|consen 243 ELQRLRRQFIKLT-KGQPLPTDLDQLKRLFVDY 274 (281)
T ss_pred HHHHHHHHHHHhh-cCCCCCCCHHHHHHHHHHH
Confidence 3799999999998 9999999999999988876
No 142
>cd01764 Urm1 Urm1-like ubuitin domain. Urm1 (Ubiquitin-Related Modifier1) The Urm1 fold, like those of two closely related proteins MoaD (molybdopterin synthase) and ThiS (sulfur carrier protein), is similar to that of ubiquitin although there is little or no sequence similarity. The C-terminal glycines of Urm1 are conjugated to an E1-like protein Uba4 as part of a novel conjugation system in yeast. The Urm1 fold is found only in eukaryotes.
Probab=23.78 E-value=54 Score=29.03 Aligned_cols=24 Identities=13% Similarity=0.250 Sum_probs=21.0
Q ss_pred hhhHHHHHHHHHHhhhhhhhhcCC
Q psy13798 62 STQPEVQYLKERHLQLRQTYLKDS 85 (614)
Q Consensus 62 ~~H~~V~~~KeqyL~~Rr~~l~D~ 85 (614)
.|.+.|+.++++|...|+.++.|.
T Consensus 30 tV~dll~~L~~~~~~~~~~lf~~~ 53 (94)
T cd01764 30 TVGDLLDYVASNLLEERPDLFIEG 53 (94)
T ss_pred cHHHHHHHHHHhCchhhhhhEecC
Confidence 578899999999999999988764
No 143
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=23.63 E-value=85 Score=31.03 Aligned_cols=42 Identities=14% Similarity=0.308 Sum_probs=26.0
Q ss_pred EEEeecCCChHHHHHHHHHHHHHHHHh--------hhccchhhHHHHHHHHHH
Q psy13798 30 THIWFKSPLSTELYQTMRRVHDAVVSV--------AGSLQSTQPEVQYLKERH 74 (614)
Q Consensus 30 ~~~~~~~~~pqdL~~~m~klhetfVal--------Ag~lq~~H~~V~~~Keqy 74 (614)
-|+|+. |.-+.+..+.|.|.|+-| ..+++...++++.++++|
T Consensus 92 pH~Wld---p~~~~~~~~~Ia~~L~~~~P~~~~~y~~N~~~~~~~L~~l~~~~ 141 (256)
T PF01297_consen 92 PHVWLD---PENAKKMAEAIADALSELDPANKDYYEKNAEKYLKELDELDAEI 141 (256)
T ss_dssp STGGGS---HHHHHHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHH---HHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHHHHHH
Confidence 489986 677777778888887764 223444444444444444
No 144
>KOG3123|consensus
Probab=23.59 E-value=20 Score=37.45 Aligned_cols=68 Identities=21% Similarity=0.271 Sum_probs=50.2
Q ss_pred cccceeeEEEe----------------ecCCChHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHhhhhhhhhcCCC
Q psy13798 23 WTGSRFYTHIW----------------FKSPLSTELYQTMRRVHDAVVSVAGSLQSTQPEVQYLKERHLQLRQTYLKDST 86 (614)
Q Consensus 23 ~~~~~~~~~~~----------------~~~~~pqdL~~~m~klhetfValAg~lq~~H~~V~~~KeqyL~~Rr~~l~D~t 86 (614)
|.-..||.||| .|.+.=..|.++ ||+||- -|-+++.+.+|++-|-+-+--.-....+|
T Consensus 141 wrP~SfydkI~~Nr~~glHTLcLLDIkvkEqs~enl~rg-rkiyep-----pRymsvn~a~~QlLei~e~~~~~~~~edT 214 (272)
T KOG3123|consen 141 WRPESFYDKIKENRQLGLHTLCLLDIKVKEQSVENLARG-RKIYEP-----PRYMSVNEAAEQLLEIEEKRGEPAYTEDT 214 (272)
T ss_pred cCchhHHHHHHHhhhcCceeEEEEEEeeccHHHHHHhcc-ccccCC-----chhhhHHHHHHHHHHHHHhhCCCCcCCCc
Confidence 55566777666 355555667777 788874 68899999999999988777666777778
Q ss_pred cccccccCCC
Q psy13798 87 NVFDVERGGR 96 (614)
Q Consensus 87 dvFe~~~~~~ 96 (614)
-++..-|.+.
T Consensus 215 ~~v~~~R~Gs 224 (272)
T KOG3123|consen 215 LCVAVARVGS 224 (272)
T ss_pred eEEEEEecCC
Confidence 8888777643
No 145
>PF06580 His_kinase: Histidine kinase; InterPro: IPR010559 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This family represents a region within bacterial histidine kinase enzymes. Two-component signal transduction systems such as those mediated by histidine kinase are integral parts of bacterial cellular regulatory processes, and are used to regulate the expression of genes involved in virulence. Members of this family often contain IPR003594 from INTERPRO and/or IPR003660 from INTERPRO.; GO: 0000155 two-component sensor activity, 0000160 two-component signal transduction system (phosphorelay), 0016021 integral to membrane
Probab=23.45 E-value=1.5e+02 Score=25.34 Aligned_cols=49 Identities=10% Similarity=0.215 Sum_probs=30.5
Q ss_pred hHHHHHHHHHHH---HHHHHhhhccchhhHHHHHHHHHHhhhhhhhhcCCCcc
Q psy13798 39 STELYQTMRRVH---DAVVSVAGSLQSTQPEVQYLKERHLQLRQTYLKDSTNV 88 (614)
Q Consensus 39 pqdL~~~m~klh---etfValAg~lq~~H~~V~~~KeqyL~~Rr~~l~D~tdv 88 (614)
|++....+.+|= +-.+.--..+-.++++++.. |.||.+.|..++|.-+|
T Consensus 29 ~~~~~~~i~~ls~~lRy~l~~~~~~v~l~~El~~i-~~Yl~i~~~R~~~~l~~ 80 (82)
T PF06580_consen 29 PEKASEMILSLSDLLRYSLSSKEEFVTLEEELEFI-ENYLEIQKIRFGDRLEY 80 (82)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCeeeHHHHHHHH-HHHHHHHHHHCCCceEe
Confidence 444444444433 33333334445678888776 47999999999987654
No 146
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=23.40 E-value=1.4e+02 Score=31.34 Aligned_cols=60 Identities=28% Similarity=0.392 Sum_probs=36.3
Q ss_pred ceeeEEEeecCC----------ChHHHHHHHHH---HHHHHHHhhhc----------cchhhHHHHHHHHHHhhhhhhhh
Q psy13798 26 SRFYTHIWFKSP----------LSTELYQTMRR---VHDAVVSVAGS----------LQSTQPEVQYLKERHLQLRQTYL 82 (614)
Q Consensus 26 ~~~~~~~~~~~~----------~pqdL~~~m~k---lhetfValAg~----------lq~~H~~V~~~KeqyL~~Rr~~l 82 (614)
+.=|.+|-+..| +|..|..-|+| +++.+..+... +.++=++++.+||+|..+|+ .|
T Consensus 124 ~~~~D~IVvDt~ptg~tLrlL~lP~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~L 202 (305)
T PF02374_consen 124 SGEYDLIVVDTPPTGHTLRLLSLPERLRWWLDRLLKLRRKIRSLARPLSGLGLGAVPLDEILEELEEMRERLERLRE-LL 202 (305)
T ss_dssp HCSTSEEEEESSSSHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCHSHCCHHHHHHHHHHHHHHHHHHHHHHH-HH
T ss_pred hCCCCEEEECCCCcHHHHHHHhHHHHHHHHHHHHHHHHHhhcchhhhhhcccccccchHHHHHHHHHHHHHHHHHHH-Hh
Confidence 444666666655 46666666664 34433333222 23466778888888888876 56
Q ss_pred cCCC
Q psy13798 83 KDST 86 (614)
Q Consensus 83 ~D~t 86 (614)
+||.
T Consensus 203 ~dp~ 206 (305)
T PF02374_consen 203 RDPE 206 (305)
T ss_dssp TSTT
T ss_pred cCCC
Confidence 6764
No 147
>COG5484 Uncharacterized conserved protein [Function unknown]
Probab=23.38 E-value=51 Score=35.05 Aligned_cols=59 Identities=15% Similarity=0.038 Sum_probs=47.3
Q ss_pred EEEeecCCChHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHhhhhhhhhcCC---Cccccccc
Q psy13798 30 THIWFKSPLSTELYQTMRRVHDAVVSVAGSLQSTQPEVQYLKERHLQLRQTYLKDS---TNVFDVER 93 (614)
Q Consensus 30 ~~~~~~~~~pqdL~~~m~klhetfValAg~lq~~H~~V~~~KeqyL~~Rr~~l~D~---tdvFe~~~ 93 (614)
+|=-|..-+|.+++.-|++|||..- -+.|-..+++|+|-|+.-||....-+ ++.||.++
T Consensus 98 t~G~fskl~pe~~se~eq~i~~~~~-----~d~i~~~~qi~y~aiiR~rkiM~~~~~~e~~~s~~E~ 159 (279)
T COG5484 98 THGEFSKLLPEETSEIEQTIYESSP-----RDLIWDQIQIQYAAIIRARKIMKVSNIGETWYSAREA 159 (279)
T ss_pred ccCchhhcChhhhhHHHHHHHhcCc-----cchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHH
Confidence 4777888899999999999999743 46777888999999999998876655 66666544
No 148
>PRK14148 heat shock protein GrpE; Provisional
Probab=23.32 E-value=94 Score=31.39 Aligned_cols=37 Identities=11% Similarity=0.285 Sum_probs=21.4
Q ss_pred HHHHHHhhhccchhhHHHHHHHHHHh-------hhhhhhhcCCC
Q psy13798 50 HDAVVSVAGSLQSTQPEVQYLKERHL-------QLRQTYLKDST 86 (614)
Q Consensus 50 hetfValAg~lq~~H~~V~~~KeqyL-------~~Rr~~l~D~t 86 (614)
.+....|-.+|..+-++++.+|++|| ||||+.-||-.
T Consensus 39 ~~e~~~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~rKR~~rE~e 82 (195)
T PRK14148 39 EEQLERAKDTIKELEDSCDQFKDEALRAKAEMENIRKRAERDVS 82 (195)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555 78887665543
No 149
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=23.26 E-value=2.3e+02 Score=22.30 Aligned_cols=30 Identities=13% Similarity=0.221 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHhhhccchhhHHHHHHHHH
Q psy13798 44 QTMRRVHDAVVSVAGSLQSTQPEVQYLKER 73 (614)
Q Consensus 44 ~~m~klhetfValAg~lq~~H~~V~~~Keq 73 (614)
..|++|++.+.-|-.-.+.||..|+.|-|.
T Consensus 4 ~~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ 33 (63)
T PF05739_consen 4 EELDELEQSIQELKQMFQDIGEEVEEQNEM 33 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCHhh
Confidence 456667777776766667777777666654
No 150
>PF00617 RasGEF: RasGEF domain; InterPro: IPR001895 Ras proteins are membrane-associated molecular switches that bind GTP and GDP and slowly hydrolyze GTP to GDP []. The balance between the GTP bound (active) and GDP bound (inactive) states is regulated by the opposite action of proteins activating the GTPase activity and that of proteins which promote the loss of bound GDP and the uptake of fresh GTP [, ]. The latter proteins are known as guanine-nucleotide dissociation stimulators (GDSs) (or also as guanine-nucleotide releasing (or exchange) factors (GRFs)). Proteins that act as GDS can be classified into at least two families, on the basis of sequence similarities, the CDC24 family (see IPR001331 from INTERPRO) and the CDC25 family. The size of the proteins of the CDC25 family range from 309 residues (LTE1) to 1596 residues (sos). The sequence similarity shared by all these proteins is limited to a region of about 250 amino acids generally located in their C-terminal section (currently the only exceptions are sos and ralGDS where this domain makes up the central part of the protein). This domain has been shown, in CDC25 an SCD25, to be essential for the activity of these proteins.; GO: 0005085 guanyl-nucleotide exchange factor activity, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IJE_S 3T6G_A 1NVW_S 1BKD_S 1XDV_A 2II0_A 1NVU_S 1NVX_S 1NVV_S 1XD4_B ....
Probab=23.15 E-value=80 Score=29.19 Aligned_cols=11 Identities=9% Similarity=0.078 Sum_probs=6.1
Q ss_pred HHHhhhhhhhh
Q psy13798 72 ERHLQLRQTYL 82 (614)
Q Consensus 72 eqyL~~Rr~~l 82 (614)
+.|.+||+.+-
T Consensus 137 ~~~~~yr~~~~ 147 (188)
T PF00617_consen 137 NNYKNYREALK 147 (188)
T ss_dssp HHHHHHHHHHH
T ss_pred hhhHHHHHhhc
Confidence 45566665554
No 151
>PF10360 DUF2433: Protein of unknown function (DUF2433); InterPro: IPR018829 This entry represents a conserved domain of 120 residues from a family fungal proteins. Their function is not known.
Probab=23.02 E-value=74 Score=30.62 Aligned_cols=52 Identities=23% Similarity=0.390 Sum_probs=39.5
Q ss_pred HHHhhhccchhhHHHHHHHHHHhhhh---hhhhcCCCcccccccCCCCCCCCCCcCCCCCCCC
Q psy13798 53 VVSVAGSLQSTQPEVQYLKERHLQLR---QTYLKDSTNVFDVERGGRDTKLPRDVEGPSPFSA 112 (614)
Q Consensus 53 fValAg~lq~~H~~V~~~KeqyL~~R---r~~l~D~tdvFe~~~~~~~~~~~~~~tGPtPFs~ 112 (614)
|.++=..+.+|-+.||.+-|.-|.-+ |.+|+-.-+||| ++|.+..++.||.-
T Consensus 21 l~~~k~~F~~vW~~VK~~ve~~i~~~~~q~~LL~~AL~v~~--------kiP~~~~~~~~~~~ 75 (132)
T PF10360_consen 21 LSASKASFGEVWETVKGQVEEAIDPNEAQRNLLENALSVFD--------KIPISANGGNPFIG 75 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH--------hCCCCCCCCCCcCC
Confidence 33444556677888888888777766 888998999999 77888888888743
No 152
>TIGR00012 L29 ribosomal protein L29. called L29 in prokaryotic (50S) large subunits and L35 in eukaryotic (60S) large subunits.
Probab=22.91 E-value=62 Score=26.19 Aligned_cols=19 Identities=21% Similarity=0.321 Sum_probs=17.2
Q ss_pred cchhhHHHHHHHHHHhhhh
Q psy13798 60 LQSTQPEVQYLKERHLQLR 78 (614)
Q Consensus 60 lq~~H~~V~~~KeqyL~~R 78 (614)
..+++++++.+|+.|++||
T Consensus 7 ~~EL~~~l~~lr~eLf~Lr 25 (55)
T TIGR00012 7 KEELAKKLDELKKELFELR 25 (55)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999
No 153
>PF04959 ARS2: Arsenite-resistance protein 2; InterPro: IPR007042 This entry represents Arsenite-resistance protein 2 (also known as Serrate RNA effector molecule homolog) which is thought to play a role in arsenite resistance [], although does not directly confer arsenite resistance but rather modulates arsenic sensitivity []. Arsenite is a carcinogenic compound which can act as a comutagen by inhibiting DNA repair. It is also involved in cell cycle progression at S phase. ; PDB: 3AX1_A.
Probab=22.78 E-value=47 Score=33.94 Aligned_cols=20 Identities=40% Similarity=0.954 Sum_probs=13.8
Q ss_pred ccchhHHHHhhcccccccee
Q psy13798 9 FHHDKWLWKLCGSVWTGSRF 28 (614)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~ 28 (614)
-.-+||+-+||+....+..|
T Consensus 73 ~~~~K~~C~lc~KlFkg~eF 92 (214)
T PF04959_consen 73 EDEDKWRCPLCGKLFKGPEF 92 (214)
T ss_dssp SSSEEEEE-SSS-EESSHHH
T ss_pred HcCCEECCCCCCcccCChHH
Confidence 35678888999988777665
No 154
>PRK14150 heat shock protein GrpE; Provisional
Probab=22.73 E-value=54 Score=32.75 Aligned_cols=8 Identities=13% Similarity=0.252 Sum_probs=4.4
Q ss_pred hhhhhhhc
Q psy13798 76 QLRQTYLK 83 (614)
Q Consensus 76 ~~Rr~~l~ 83 (614)
||||+.-|
T Consensus 70 N~rkR~~k 77 (193)
T PRK14150 70 NIRRRAEQ 77 (193)
T ss_pred HHHHHHHH
Confidence 56666443
No 155
>PRK12807 flagellin; Provisional
Probab=22.65 E-value=1.3e+02 Score=31.13 Aligned_cols=52 Identities=15% Similarity=0.162 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHhh------hccchhhHHHHHHHHHHhhhhhhhhcCCCccccc
Q psy13798 40 TELYQTMRRVHDAVVSVA------GSLQSTQPEVQYLKERHLQLRQTYLKDSTNVFDV 91 (614)
Q Consensus 40 qdL~~~m~klhetfValA------g~lq~~H~~V~~~KeqyL~~Rr~~l~D~tdvFe~ 91 (614)
+++...|+|+.|-.|..+ .....|.++|+.++|+.+.+-+.-=-+--.||..
T Consensus 81 ~~i~~~l~r~rel~v~a~ngt~s~~dr~ai~~Ei~~l~~~i~~~a~~t~~nG~~lf~g 138 (287)
T PRK12807 81 NSVSNILTRMRDIAVQSSNGTNTAENQSALQKEFAELQEQIDYIAKNTEFNDKNLLAG 138 (287)
T ss_pred HHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCcCCeeecCC
Confidence 577888999999888664 3667899999999999888753212223345553
No 156
>PRK12802 flagellin; Provisional
Probab=22.59 E-value=1.3e+02 Score=30.97 Aligned_cols=52 Identities=12% Similarity=0.173 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHhhh------ccchhhHHHHHHHHHHhhhhhhhhcCCCccccc
Q psy13798 40 TELYQTMRRVHDAVVSVAG------SLQSTQPEVQYLKERHLQLRQTYLKDSTNVFDV 91 (614)
Q Consensus 40 qdL~~~m~klhetfValAg------~lq~~H~~V~~~KeqyL~~Rr~~l~D~tdvFe~ 91 (614)
+++...|+|++|-.|..+- ....|.++|+.++|+.+.+-..-=-+--.||+.
T Consensus 83 ~~i~~~l~r~rel~v~a~ngt~s~~dr~ai~~ei~~l~~~i~~~an~t~~nG~~lf~G 140 (282)
T PRK12802 83 QESTNILQRMRELAVQSRNDSNDSTDRAALNKEFTTMLDEITRIATSTTLNGKNLLDG 140 (282)
T ss_pred HHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCcCCeeeeCC
Confidence 5677889999998887743 567888999999999888765322233456664
No 157
>TIGR02791 VirB5 P-type DNA transfer protein VirB5. The VirB5 protein is involved in the type IV DNA secretion systems typified by the Agrobacterium Ti plasmid vir system where it interacts with several other proteins essential for proper pilus formation. VirB5 is homologous to the IncN (N-type) conjugation system protein TraC as well as the P-type protein TrbJ and the F-type protein TraE.
Probab=22.58 E-value=84 Score=31.43 Aligned_cols=31 Identities=19% Similarity=0.325 Sum_probs=0.0
Q ss_pred HHHHHhhhccchhhHHHHHHHHHHhhhhhhh
Q psy13798 51 DAVVSVAGSLQSTQPEVQYLKERHLQLRQTY 81 (614)
Q Consensus 51 etfValAg~lq~~H~~V~~~KeqyL~~Rr~~ 81 (614)
|.++-..-+|...-+.|+.+||||-.|+++|
T Consensus 34 q~i~q~~~q~~q~~~q~~ql~~Q~~q~k~~y 64 (220)
T TIGR02791 34 NALAQAIEQMAALKTQYEQLSEQIEQYKQQY 64 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 158
>PF07007 DUF1311: Protein of unknown function (DUF1311); InterPro: IPR009739 This family consists of several bacterial proteins of around 120 residues in length. Members of this family contain four highly conserved cysteine residues. The function of this family is unknown.; PDB: 3GI7_A.
Probab=22.57 E-value=2.1e+02 Score=23.15 Aligned_cols=48 Identities=13% Similarity=0.148 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHhhhccch-hh--HHHHHHHHHHhhhhhhhhcCCCccc
Q psy13798 42 LYQTMRRVHDAVVSVAGSLQS-TQ--PEVQYLKERHLQLRQTYLKDSTNVF 89 (614)
Q Consensus 42 L~~~m~klhetfValAg~lq~-~H--~~V~~~KeqyL~~Rr~~l~D~tdvF 89 (614)
+...=++|++.+..|-.+|.. .. +.++.-...++.||+..-+......
T Consensus 20 ~~~~d~~l~~~y~~~~~~l~~~~~~~~~l~~~Q~~W~~~r~~~C~~~~~~~ 70 (95)
T PF07007_consen 20 LQQWDKELNKAYKALLKRLKQEERARKALKESQRAWLKYRDAECAFAASAY 70 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHS---HHHHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 333344455555555555552 23 6777777889999997766544443
No 159
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=22.54 E-value=63 Score=31.06 Aligned_cols=11 Identities=45% Similarity=1.069 Sum_probs=0.0
Q ss_pred cchhHHHHhhc
Q psy13798 10 HHDKWLWKLCG 20 (614)
Q Consensus 10 ~~~~~~~~~~~ 20 (614)
-||+|+|++.-
T Consensus 21 ~i~~~~~~l~~ 31 (161)
T PF04420_consen 21 YIDNWLWRLYL 31 (161)
T ss_dssp -----------
T ss_pred HHHHHHHHHHH
Confidence 57889887653
No 160
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=22.47 E-value=1.5e+02 Score=28.26 Aligned_cols=40 Identities=15% Similarity=0.263 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHhhhhhhh
Q psy13798 42 LYQTMRRVHDAVVSVAGSLQSTQPEVQYLKERHLQLRQTY 81 (614)
Q Consensus 42 L~~~m~klhetfValAg~lq~~H~~V~~~KeqyL~~Rr~~ 81 (614)
+...+.++-+.+..+-..+++++++|+.++|.|.++++.+
T Consensus 107 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~ 146 (191)
T PF04156_consen 107 LESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEI 146 (191)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444555666677777777777777776654
No 161
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=22.39 E-value=1.4e+02 Score=24.87 Aligned_cols=38 Identities=18% Similarity=0.218 Sum_probs=25.5
Q ss_pred HHHHHhhhccchhhHHHHHHHHHHhh--hhhhhhcCCCcc
Q psy13798 51 DAVVSVAGSLQSTQPEVQYLKERHLQ--LRQTYLKDSTNV 88 (614)
Q Consensus 51 etfValAg~lq~~H~~V~~~KeqyL~--~Rr~~l~D~tdv 88 (614)
-....+..+++.++++++.+++++=. ++...|.|+..|
T Consensus 24 ~~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~~~rI 63 (85)
T TIGR02209 24 HQTRQLNNELQKLQLEIDKLQKEWRDLQLEVAELSRHERI 63 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHH
Confidence 34556777888888888877776644 445566666554
No 162
>PHA03260 Capsid triplex subunit 2; Provisional
Probab=22.25 E-value=1e+02 Score=33.43 Aligned_cols=42 Identities=7% Similarity=-0.036 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHhhhccchhhH--HHHHHHHHHhhhhhhh
Q psy13798 40 TELYQTMRRVHDAVVSVAGSLQSTQP--EVQYLKERHLQLRQTY 81 (614)
Q Consensus 40 qdL~~~m~klhetfValAg~lq~~H~--~V~~~KeqyL~~Rr~~ 81 (614)
.-|..+|||||+++-.+|--|+..|+ .+..+-..|.+|+.--
T Consensus 211 ~a~q~gi~~LY~a~~L~a~tiD~A~~p~~~~aii~~Y~~f~egk 254 (339)
T PHA03260 211 DALQFALHQLYSAFKLHAIFIDGAAQPTTAAAIIAAYADFVEGK 254 (339)
T ss_pred cHHHHHHHHHHHhHHHHHHhhhhhhCCchHHHHHHHHHHHhccC
Confidence 34678999999999844766665554 4555566688887544
No 163
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=22.14 E-value=74 Score=25.27 Aligned_cols=14 Identities=14% Similarity=0.453 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHH
Q psy13798 40 TELYQTMRRVHDAV 53 (614)
Q Consensus 40 qdL~~~m~klhetf 53 (614)
.|+.+++++||+.|
T Consensus 49 ~~~~~av~~Lh~~f 62 (64)
T cd04937 49 DDVKEAVNALHEAF 62 (64)
T ss_pred HHHHHHHHHHHHHh
Confidence 68899999999988
No 164
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=22.10 E-value=1.6e+02 Score=25.86 Aligned_cols=47 Identities=21% Similarity=0.318 Sum_probs=34.7
Q ss_pred ChHHHHHHHHHHHHHHHHhhhccchhhHHHHHH---------HHHHhhhhhhhhcC
Q psy13798 38 LSTELYQTMRRVHDAVVSVAGSLQSTQPEVQYL---------KERHLQLRQTYLKD 84 (614)
Q Consensus 38 ~pqdL~~~m~klhetfValAg~lq~~H~~V~~~---------KeqyL~~Rr~~l~D 84 (614)
...|+...-+.|.+.+-.|...|..+.+.|++. -+.=|.-||.++.+
T Consensus 33 ~~~e~~~~~~eL~~~l~~ie~~L~DL~~aV~ive~np~kF~l~~~Ei~~Rr~fv~~ 88 (97)
T PF09177_consen 33 SSEELKWLKRELRNALQSIEWDLEDLEEAVRIVEKNPSKFNLSEEEISRRRQFVSA 88 (97)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHT-HHHHHHHHHHHHHH
T ss_pred CcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCCHHHHHHHHHHHHH
Confidence 567888888888888888888998888888872 23335567776654
No 165
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=22.08 E-value=1.4e+02 Score=25.00 Aligned_cols=42 Identities=5% Similarity=-0.103 Sum_probs=21.9
Q ss_pred CChHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHhhhhh
Q psy13798 37 PLSTELYQTMRRVHDAVVSVAGSLQSTQPEVQYLKERHLQLRQ 79 (614)
Q Consensus 37 ~~pqdL~~~m~klhetfValAg~lq~~H~~V~~~KeqyL~~Rr 79 (614)
..++.....+++|++.+-.-=- -..|..+.+.+|++|-.+++
T Consensus 29 fk~~~w~~i~~~~~~~~~~~~t-~~qlknk~~~lk~~y~~~~~ 70 (96)
T PF12776_consen 29 FKKEGWNNIAEEFNEKTGLNYT-KKQLKNKWKTLKKDYRIWKE 70 (96)
T ss_pred cCHHHHHHHHHHHHHHhCCccc-HHHHHHHHHHHHHHHHHHHH
Confidence 4567777788888773211111 12344445555555555443
No 166
>smart00397 t_SNARE Helical region found in SNAREs. All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".
Probab=22.04 E-value=1.7e+02 Score=22.40 Aligned_cols=35 Identities=9% Similarity=0.112 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHH
Q psy13798 40 TELYQTMRRVHDAVVSVAGSLQSTQPEVQYLKERH 74 (614)
Q Consensus 40 qdL~~~m~klhetfValAg~lq~~H~~V~~~Keqy 74 (614)
++-...|++|+....-|..-.+.|+..|+.|.|.-
T Consensus 8 ~~~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~l 42 (66)
T smart00397 8 EERDEELEQLEKSIGELKQIFLDMGTELEEQGEQL 42 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677777777777777777778888777653
No 167
>PLN03006 carbonate dehydratase
Probab=22.03 E-value=50 Score=35.43 Aligned_cols=28 Identities=14% Similarity=0.221 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHhhhhhhhhcCCCccccc
Q psy13798 64 QPEVQYLKERHLQLRQTYLKDSTNVFDV 91 (614)
Q Consensus 64 H~~V~~~KeqyL~~Rr~~l~D~tdvFe~ 91 (614)
+..++.+|++|+..++....+..+.|+.
T Consensus 79 ~~~~~~L~~rf~~f~~~~~~~~~~~~~~ 106 (301)
T PLN03006 79 TDVFDDMKQRFLAFKKLKYMDDFEHYKN 106 (301)
T ss_pred ccHHHHHHHHHHhchhhccccCHHHHHH
Confidence 4568999999999999888777777763
No 168
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=21.91 E-value=1.4e+02 Score=30.99 Aligned_cols=27 Identities=19% Similarity=0.398 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHhhhccchhhHH
Q psy13798 40 TELYQTMRRVHDAVVSVAGSLQSTQPE 66 (614)
Q Consensus 40 qdL~~~m~klhetfValAg~lq~~H~~ 66 (614)
+||..-++++++....|=.+|.+++..
T Consensus 96 ~ELE~elr~~~~~~~~L~~Ev~~L~~D 122 (248)
T PF08172_consen 96 AELEEELRKQQQTISSLRREVESLRAD 122 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 588888888888888887777776643
No 169
>PRK07366 succinyldiaminopimelate transaminase; Validated
Probab=21.86 E-value=1.4e+02 Score=30.92 Aligned_cols=44 Identities=25% Similarity=0.292 Sum_probs=27.1
Q ss_pred ChHHHHHHHHHHHHHH---------HHhhhccchhhHHHHHHHHHHhhhhhhh
Q psy13798 38 LSTELYQTMRRVHDAV---------VSVAGSLQSTQPEVQYLKERHLQLRQTY 81 (614)
Q Consensus 38 ~pqdL~~~m~klhetf---------ValAg~lq~~H~~V~~~KeqyL~~Rr~~ 81 (614)
.|.||...|+++.+.. .+....|..-++-|+.++++|..-|+++
T Consensus 253 ~~~~li~~l~~~~~~~~~~~~~~~~~~a~~~l~~~~~~l~~~~~~~~~~r~~l 305 (388)
T PRK07366 253 GNAQLIQALRQVKAVVDFNQYRGILNGAIAALTGPQATVQQTVQIFRQRRDAF 305 (388)
T ss_pred CCHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHH
Confidence 4678988888876531 1223334333566777788777666554
No 170
>PRK00784 cobyric acid synthase; Provisional
Probab=21.84 E-value=1.1e+02 Score=34.01 Aligned_cols=50 Identities=18% Similarity=0.173 Sum_probs=28.1
Q ss_pred eEEEeecCCChHHHHHHHHHHHHHH-------HHhhhccchhhHHHHHHHHHHhhhhhh
Q psy13798 29 YTHIWFKSPLSTELYQTMRRVHDAV-------VSVAGSLQSTQPEVQYLKERHLQLRQT 80 (614)
Q Consensus 29 ~~~~~~~~~~pqdL~~~m~klhetf-------ValAg~lq~~H~~V~~~KeqyL~~Rr~ 80 (614)
|.|++|++ |+=+..-++++.+.- +....+.+..-.+|...-|+||++.+-
T Consensus 428 Y~H~~~~n--p~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l 484 (488)
T PRK00784 428 YLHGLFDN--DAFRRALLNWLGARKGLAPASALDYAALREAQLDRLADLVEEHLDLDAL 484 (488)
T ss_pred eeeeccCC--HHHHHHHHHHHHHhcCCCCcCCCCHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 79999987 654444444443321 111223344445666777788887653
No 171
>PF13682 CZB: Chemoreceptor zinc-binding domain
Probab=21.79 E-value=76 Score=24.87 Aligned_cols=49 Identities=14% Similarity=0.289 Sum_probs=25.7
Q ss_pred cchhHHHHhhccccccceeeE---------EEeecCCChHHH-----HHHHHHHHHHHHHhhh
Q psy13798 10 HHDKWLWKLCGSVWTGSRFYT---------HIWFKSPLSTEL-----YQTMRRVHDAVVSVAG 58 (614)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~pqdL-----~~~m~klhetfValAg 58 (614)
.|.+|+.+|--.|-....... =.|+.+.-.+.+ ...|.++|+.|=-+|.
T Consensus 3 ~H~~w~~~l~~~i~~~~~~~~~~~~~~C~fG~Wl~~~~~~~~~~~~~~~~l~~~H~~~H~~a~ 65 (70)
T PF13682_consen 3 DHLRWKSRLERAIDEGEDPEPPVDHHQCRFGKWLYGEGRERFGDLPEFKELEEPHEEFHELAR 65 (70)
T ss_pred HHHHHHHHHHHHHHccCCCcCCCCCCCCCCCceecccChhhhhccHHHHHHHHHHHHHHHHHH
Confidence 588888888766652222211 136655432211 3556666665544443
No 172
>PRK13717 conjugal transfer protein TrbI; Provisional
Probab=21.58 E-value=17 Score=34.81 Aligned_cols=74 Identities=16% Similarity=0.132 Sum_probs=45.3
Q ss_pred ccccchhHHHHhhcccc---ccceeeEEEeecCCChHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHhhhhhhhhc
Q psy13798 7 IRFHHDKWLWKLCGSVW---TGSRFYTHIWFKSPLSTELYQTMRRVHDAVVSVAGSLQSTQPEVQYLKERHLQLRQTYLK 83 (614)
Q Consensus 7 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~pqdL~~~m~klhetfValAg~lq~~H~~V~~~KeqyL~~Rr~~l~ 83 (614)
-|+.|-+|.--+|--.- .+..|.. .|-..|.-..=-|++.-..|+.-+++.+..-+++|.+-|+|-+.=+..|.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~a~~s~~~---~~~~~P~iV~FDmK~Tld~F~~Q~~~~~lte~q~e~lt~rF~~aL~~~L~ 89 (128)
T PRK13717 13 PRRSHWWWTVPGCLAMVLLNAAVSYGI---VRLNAPVTAAFNMKQTVDAFFDSASQKQLSEAQSKALSARFNTALEASLQ 89 (128)
T ss_pred cchhcchHHHHHHHHHHHHHHHHHHHH---hhcCCCeEEEEehHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 36778888878885211 1222222 23334553334455555666666678888899999999999765554444
No 173
>PF08223 PaaX_C: PaaX-like protein C-terminal domain; InterPro: IPR013225 This family contains proteins that are similar to the product of the paaX gene of Escherichia coli (P76086 from SWISSPROT). This protein is involved in the regulation of expression of a group of proteins known to participate in the metabolism of phenylacetic acid [].; PDB: 3L09_B 3KFW_X.
Probab=21.58 E-value=85 Score=29.88 Aligned_cols=41 Identities=17% Similarity=0.189 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHhhhccchh------hHHHHHHHHHHhh---hhhhhhcCC
Q psy13798 45 TMRRVHDAVVSVAGSLQST------QPEVQYLKERHLQ---LRQTYLKDS 85 (614)
Q Consensus 45 ~m~klhetfValAg~lq~~------H~~V~~~KeqyL~---~Rr~~l~D~ 85 (614)
.|.+-||.||+.-..|... =.-.+..++++|- |||.+|+||
T Consensus 93 ~l~~~Y~~f~~~~~~~~~~l~~~~~~~~~~a~~~r~~L~h~~rr~~~~DP 142 (172)
T PF08223_consen 93 ELAAAYEAFLARFRPLLAALARAARLDPEEAFVARLLLVHEWRRLLLRDP 142 (172)
T ss_dssp HHHHHHHHHHHC--S----------CCHHHCHHHHHHHHHHHHHHHTTS-
T ss_pred HHHHHHHHHHHHhhhcccccccccCCCHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4567788887765554421 1234556666664 999999998
No 174
>CHL00154 rpl29 ribosomal protein L29; Validated
Probab=21.57 E-value=66 Score=27.40 Aligned_cols=19 Identities=21% Similarity=0.202 Sum_probs=17.0
Q ss_pred cchhhHHHHHHHHHHhhhh
Q psy13798 60 LQSTQPEVQYLKERHLQLR 78 (614)
Q Consensus 60 lq~~H~~V~~~KeqyL~~R 78 (614)
..++.+++..+|++|++||
T Consensus 14 ~~eL~~~l~elk~elf~LR 32 (67)
T CHL00154 14 DSEISEEIIKTKKELFDLR 32 (67)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999999
No 175
>PF03039 IL12: Interleukin-12 alpha subunit; InterPro: IPR004281 Interleukin 12 (IL-12) is a disulphide-bonded heterodimer consisting of a 35kDa alpha subunit and a 40kDa beta subunit. It is involved in the stimulation and maintenance of Th1 cellular immune responses, including the normal host defence against various intracellular pathogens, such as Leishmania, Toxoplasma, Measles virus and Human immunodeficiency virus 1 (HIV). IL-12 also has an important role in pathological Th1 responses, such as in inflammatory bowel disease and multiple sclerosis. Suppression of IL-12 activity in such diseases may have therapeutic benefit. On the other hand, administration of recombinant IL-12 may have therapeutic benefit in conditions associated with pathological Th2 responses [, ].; GO: 0005143 interleukin-12 receptor binding, 0008083 growth factor activity, 0006955 immune response, 0005576 extracellular region; PDB: 3HMX_B 1F45_B.
Probab=21.53 E-value=77 Score=32.84 Aligned_cols=28 Identities=14% Similarity=0.257 Sum_probs=23.7
Q ss_pred cchhhHHHHHHHHHHhhhhhhhhcCCCc
Q psy13798 60 LQSTQPEVQYLKERHLQLRQTYLKDSTN 87 (614)
Q Consensus 60 lq~~H~~V~~~KeqyL~~Rr~~l~D~td 87 (614)
|++|-|.+|.+|..+..|.|..|+||..
T Consensus 124 LssIyEDLk~Y~~efka~~~~ll~~p~~ 151 (219)
T PF03039_consen 124 LSSIYEDLKMYQAEFKAINKKLLMDPER 151 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCSTT-
T ss_pred HHHHHHHHHHHHHHHHHhhhHhhcCchh
Confidence 6777788899999999999999999864
No 176
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=21.49 E-value=1.3e+02 Score=34.58 Aligned_cols=44 Identities=20% Similarity=0.432 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHhhhccch-------hhHHHHHHHHHHhhhhhhhhc
Q psy13798 40 TELYQTMRRVHDAVVSVAGSLQS-------TQPEVQYLKERHLQLRQTYLK 83 (614)
Q Consensus 40 qdL~~~m~klhetfValAg~lq~-------~H~~V~~~KeqyL~~Rr~~l~ 83 (614)
-|+...+|.|||.+.-.--+||+ +.-+||.+|..|+.|..+|..
T Consensus 386 nd~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~ 436 (527)
T PF15066_consen 386 NDIEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMT 436 (527)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 48899999999999888888886 445678888888888877763
No 177
>TIGR02744 TrbI_Ftype type-F conjugative transfer system protein TrbI. This protein is an essential component of the F-type conjugative transfer sytem for plasmid DNA transfer and has been shown to be localized to the periplasm.
Probab=21.41 E-value=17 Score=33.95 Aligned_cols=72 Identities=15% Similarity=0.128 Sum_probs=49.6
Q ss_pred hHHHHhhccccccceeeEEEeecCCChHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHhhhhhhhhcC
Q psy13798 13 KWLWKLCGSVWTGSRFYTHIWFKSPLSTELYQTMRRVHDAVVSVAGSLQSTQPEVQYLKERHLQLRQTYLKD 84 (614)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~pqdL~~~m~klhetfValAg~lq~~H~~V~~~KeqyL~~Rr~~l~D 84 (614)
.|+--+|-..-..+..-.+.--+.|.|.-..--|+++...|+-.+++.+..-+++|.+-++|-..=+..|.|
T Consensus 6 l~~~~~~~~~~~l~~~~s~~v~~~~~P~iV~fdmk~tld~F~~q~~~~~lte~q~~~~~~rF~~~L~~~L~~ 77 (112)
T TIGR02744 6 LWMIPGCLAMVVLSALVSYGIVRLNSPVTVAFDMKQTLDAFFDSASQKKLSEAQQKALLGRFNALLEAELQA 77 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCeEEEEecHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 344346665444444333333345666666667888888888888899999999999999998776665554
No 178
>cd01019 ZnuA Zinc binding protein ZnuA. These proteins have been shown to function as initial receptors in the ABC uptake of Zn2+. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a single helix and bind their specific ligands in the cleft between these domains. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=21.40 E-value=1.5e+02 Score=30.44 Aligned_cols=49 Identities=12% Similarity=0.264 Sum_probs=30.4
Q ss_pred eeEEEeecCCChHHHHHHHHHHHHHHHHh--------hhccchhhHHHHHHHHHHhhhhh
Q psy13798 28 FYTHIWFKSPLSTELYQTMRRVHDAVVSV--------AGSLQSTQPEVQYLKERHLQLRQ 79 (614)
Q Consensus 28 ~~~~~~~~~~~pqdL~~~m~klhetfVal--------Ag~lq~~H~~V~~~KeqyL~~Rr 79 (614)
+=-|||+. |+-..+.++.|.+.|+.+ ..+++.+-++++.++++|...++
T Consensus 119 ~dPHiWld---p~n~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~L~~l~~~~~~~~~ 175 (286)
T cd01019 119 LDPHLWLS---PENAAEVAQAVAEKLSALDPDNAATYAANLEAFNARLAELDATIKERLA 175 (286)
T ss_pred CCCccCCC---HHHHHHHHHHHHHHHHHHCchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45799986 556666667777777642 34555555566666655554433
No 179
>cd01145 TroA_c Periplasmic binding protein TroA_c. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=21.40 E-value=2e+02 Score=28.00 Aligned_cols=25 Identities=16% Similarity=0.493 Sum_probs=18.0
Q ss_pred eEEEeecCCChHHHHHHHHHHHHHHHHh
Q psy13798 29 YTHIWFKSPLSTELYQTMRRVHDAVVSV 56 (614)
Q Consensus 29 ~~~~~~~~~~pqdL~~~m~klhetfVal 56 (614)
=-|||+. |.-....++.|.+.|+.+
T Consensus 107 dPH~Wld---p~~~~~~a~~I~~~L~~~ 131 (203)
T cd01145 107 NPHVWLD---PNNAPALAKALADALIEL 131 (203)
T ss_pred CcCeecC---HHHHHHHHHHHHHHHHHh
Confidence 4689985 666677777777777654
No 180
>PRK10904 DNA adenine methylase; Provisional
Probab=21.29 E-value=57 Score=33.44 Aligned_cols=53 Identities=13% Similarity=0.092 Sum_probs=31.4
Q ss_pred EEEeecCCChHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHhhhhhhhhc
Q psy13798 30 THIWFKSPLSTELYQTMRRVHDAVVSVAGSLQSTQPEVQYLKERHLQLRQTYLK 83 (614)
Q Consensus 30 ~~~~~~~~~pqdL~~~m~klhetfValAg~lq~~H~~V~~~KeqyL~~Rr~~l~ 83 (614)
.++|+ ..+-.||..-.|.|-+--..|+.+|..+.......||.|+.+|+.+-+
T Consensus 48 ~~~il-ND~n~~Lin~y~~i~~~~~~l~~~l~~~~~~~~~~~~~y~~~r~~~n~ 100 (271)
T PRK10904 48 SRYIL-ADINSDLISLYNIVKLRTDEYVQAARELFTPETNCAEVYYQLREEFNK 100 (271)
T ss_pred CeEEE-EeCCHHHHHHHHHHHHCHHHHHHHHHHHhhhccCCHHHHHHHHHHhcc
Confidence 34444 345566666666655555555555554432222349999999987754
No 181
>PRK12806 flagellin; Provisional
Probab=21.29 E-value=1.2e+02 Score=34.15 Aligned_cols=39 Identities=23% Similarity=0.288 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHhhh------ccchhhHHHHHHHHHHhhhh
Q psy13798 40 TELYQTMRRVHDAVVSVAG------SLQSTQPEVQYLKERHLQLR 78 (614)
Q Consensus 40 qdL~~~m~klhetfValAg------~lq~~H~~V~~~KeqyL~~R 78 (614)
+|+...|+||+|-.|.-+- ..+.|.++|+.|+|+.+.+=
T Consensus 83 ~~i~~iLqr~reLavqaaNgt~s~~dR~ai~~Ei~~L~~~i~~ia 127 (475)
T PRK12806 83 QETTNILQRMRELSVQAANSTNNSSDRASIQSEISQLKSELERIA 127 (475)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777788888887776543 45667777777777776654
No 182
>KOG2796|consensus
Probab=21.25 E-value=89 Score=34.04 Aligned_cols=41 Identities=15% Similarity=0.097 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHhhhccchhhHHHHHH----------HHHHhhhhhhhh
Q psy13798 40 TELYQTMRRVHDAVVSVAGSLQSTQPEVQYL----------KERHLQLRQTYL 82 (614)
Q Consensus 40 qdL~~~m~klhetfValAg~lq~~H~~V~~~----------KeqyL~~Rr~~l 82 (614)
.||..++--+|| |.+.||+|.+|++++.- --||+.||-++|
T Consensus 29 ~~l~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~l~~~t~~~lq~wT~r~~~l 79 (366)
T KOG2796|consen 29 KQLISCRNWRAA--VDLCGRLLTAHGQGYGKSGLLTSHTTDSLQLWTVRLALL 79 (366)
T ss_pred HHHHHhhhhHHH--HhhhHHHHHHHhhhhhhhheeeccchhHHHHHHHHHHHH
Confidence 356666666776 78999999999998431 125666665543
No 183
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=21.23 E-value=1.6e+02 Score=28.75 Aligned_cols=48 Identities=13% Similarity=0.076 Sum_probs=38.1
Q ss_pred cCCChHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHhhhhhhhh
Q psy13798 35 KSPLSTELYQTMRRVHDAVVSVAGSLQSTQPEVQYLKERHLQLRQTYL 82 (614)
Q Consensus 35 ~~~~pqdL~~~m~klhetfValAg~lq~~H~~V~~~KeqyL~~Rr~~l 82 (614)
....++|.+.-++.+++-+.-+-.+++.+++.++.+.+.|.+..-.-+
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 230 (292)
T PF01544_consen 183 SPFISDEDKEYLRDLLDRIERLLERAESLRERLESLQDLYQSKLSNRQ 230 (292)
T ss_dssp STTSHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHH
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777778888888888999999999999999999988765443
No 184
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=21.22 E-value=2e+02 Score=28.73 Aligned_cols=44 Identities=16% Similarity=0.254 Sum_probs=30.8
Q ss_pred cCCChHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHhh------------hhhhhhcC
Q psy13798 35 KSPLSTELYQTMRRVHDAVVSVAGSLQSTQPEVQYLKERHLQ------------LRQTYLKD 84 (614)
Q Consensus 35 ~~~~pqdL~~~m~klhetfValAg~lq~~H~~V~~~KeqyL~------------~Rr~~l~D 84 (614)
..++|.|+...++++|+.+|=..+.. =+.+-|+||. +||.+++.
T Consensus 183 ~~~~p~~~~~~~~~~~~~l~e~~a~~------dd~l~e~yl~~~~~~~~~l~~~l~~~~~~~ 238 (268)
T cd04170 183 EIEIPEELKEEVAEAREELLEAVAET------DDELMEKYLEGGELTEEELHAGLRRALRAG 238 (268)
T ss_pred eccCCHHHHHHHHHHHHHHHHHHhhC------CHHHHHHHhCCCCCCHHHHHHHHHHHHHhC
Confidence 46899999999999998876433322 2456677776 77777753
No 185
>PF05524 PEP-utilisers_N: PEP-utilising enzyme, N-terminal; InterPro: IPR008731 This sequence identifies proteins which are a component of the phosphoenolpyruvate:sugar phosphotransferase system (PTS), a major carbohydrate active transport system. The PTS system is found throughout the bacterial kingdom, and is responsible for the coupled phosphorylation and translocation of numerous sugars across the cytoplasmic membrane []. This entry represents the N-terminal domain of enzyme I (EIN) which transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr) which in turn phosphorylates a group of membrane-associated proteins, known as enzyme II. The N-terminal domain of EI (EIN) extends from residues 1 to 259 and can be phosphorylated in a fully reversible manner by phosphorylated HPr. EIN, however, cannot be autophosphorylated by PEP [, ].; GO: 0005351 sugar:hydrogen symporter activity, 0008965 phosphoenolpyruvate-protein phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0005737 cytoplasm; PDB: 2WQD_A 2XDF_B 2HWG_A 3EZB_A 2L5H_A 3EZA_A 1EZB_A 2EZA_A 1EZA_A 1EZC_A ....
Probab=21.14 E-value=54 Score=29.25 Aligned_cols=47 Identities=11% Similarity=0.174 Sum_probs=33.0
Q ss_pred hHHHHHHHHHHHHHHHHhhhccchhhHHHHHH----HHHHhhhhhhhhcCC
Q psy13798 39 STELYQTMRRVHDAVVSVAGSLQSTQPEVQYL----KERHLQLRQTYLKDS 85 (614)
Q Consensus 39 pqdL~~~m~klhetfValAg~lq~~H~~V~~~----KeqyL~~Rr~~l~D~ 85 (614)
+.|...-++||++++-.+..+|+.+.++++.. +...|.--+.+|+|+
T Consensus 30 ~~~~~~E~~rl~~Al~~~~~eL~~l~~~~~~~~~~~~a~If~ah~~~L~D~ 80 (123)
T PF05524_consen 30 IDDIEAEIERLEQALEKAREELEQLAERAESKLGEEEAAIFEAHLMMLEDP 80 (123)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHSSCTHHHHHHHHHHT-H
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhcCH
Confidence 37888999999999999998888888775422 124455556666665
No 186
>PF07477 Glyco_hydro_67C: Glycosyl hydrolase family 67 C-terminus; InterPro: IPR011099 Alpha-glucuronidases, components of an ensemble of enzymes central to the recycling of photosynthetic biomass, remove the alpha-1,2 linked 4-O-methyl glucuronic acid from xylans. This family represents the C-terminal region of alpha-glucuronidase, which is mainly alpha-helical. It wraps around the catalytic domain (IPR011100 from INTERPRO), making additional interactions both with the N-terminal domain (IPR005154 from INTERPRO) of its parent monomer and also forming the majority of the dimer-surface with the equivalent C-terminal domain of the other monomer of the dimer [].; GO: 0046559 alpha-glucuronidase activity, 0045493 xylan catabolic process, 0005576 extracellular region; PDB: 1GQL_A 1GQI_B 1GQJ_B 1GQK_A 1H41_A 1MQR_A 1K9F_A 1K9E_A 1L8N_A 1K9D_A ....
Probab=21.12 E-value=16 Score=37.64 Aligned_cols=71 Identities=15% Similarity=0.237 Sum_probs=33.5
Q ss_pred cccchhHHHHhhccccccceeeEEEeecCCChHHHHHHHHHHHHHHHHh--hhccchhhHHHHHHHHHHhhhhhhhh
Q psy13798 8 RFHHDKWLWKLCGSVWTGSRFYTHIWFKSPLSTELYQTMRRVHDAVVSV--AGSLQSTQPEVQYLKERHLQLRQTYL 82 (614)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pqdL~~~m~klhetfVal--Ag~lq~~H~~V~~~KeqyL~~Rr~~l 82 (614)
-|||-.|-.||-. |....-||..+---=-|--+.|+|+-+++-.. +.|-+.|.+++++|.++=+..|.+.+
T Consensus 135 wFHHvPw~~~l~s----G~Tl~q~l~~~~~~Gve~v~~~~~~W~~l~~~iD~~rf~~V~~rL~~Q~~~A~~WRD~~~ 207 (225)
T PF07477_consen 135 WFHHVPWDHKLKS----GKTLWQELYDTHYEGVEEVREMQKTWDSLEGKIDEERFEEVLERLKIQAREAKWWRDACN 207 (225)
T ss_dssp HH-EEETT-B-TT----S-BHHHHHHHHHHHHHHHHHHHHHHHHTTTTSS-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccCCCcCcCCC----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999888742 32222233222111122234455555443211 34555666666677666666665543
No 187
>PRK00056 mtgA monofunctional biosynthetic peptidoglycan transglycosylase; Provisional
Probab=21.08 E-value=87 Score=32.42 Aligned_cols=29 Identities=14% Similarity=0.225 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhhhccchhhHHHHHHHHHHhhh
Q psy13798 46 MRRVHDAVVSVAGSLQSTQPEVQYLKERHLQL 77 (614)
Q Consensus 46 m~klhetfValAg~lq~~H~~V~~~KeqyL~~ 77 (614)
.||+-|.++|+ +|..+..| |++-|.|||.
T Consensus 132 ~RK~~E~~lA~--~lE~~~sK-~~ILe~YLN~ 160 (236)
T PRK00056 132 VRKGLEAPLTL--MIELVWSK-RRILEVYLNI 160 (236)
T ss_pred hHHHHHHHHHH--HHHHhCCH-HHHHHHHHHH
Confidence 57888987664 66666665 4556899995
No 188
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=20.96 E-value=1.8e+02 Score=24.90 Aligned_cols=29 Identities=21% Similarity=0.282 Sum_probs=14.5
Q ss_pred HHHHHHHhhhccchhhHHHHHHHHHHhhh
Q psy13798 49 VHDAVVSVAGSLQSTQPEVQYLKERHLQL 77 (614)
Q Consensus 49 lhetfValAg~lq~~H~~V~~~KeqyL~~ 77 (614)
.++-++.+=.||..||++++.+|++=.++
T Consensus 62 y~~KL~~ikkrm~~l~~~l~~lk~R~~~L 90 (92)
T PF14712_consen 62 YVKKLVNIKKRMSNLHERLQKLKKRADKL 90 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33344444555555555555555554444
No 189
>KOG2223|consensus
Probab=20.90 E-value=1.1e+02 Score=35.17 Aligned_cols=92 Identities=20% Similarity=0.226 Sum_probs=55.0
Q ss_pred chhHHHHhhccccccceeeEE---E------eecCCChHHHHHHHHHHHHHHHHhhhc--cchhhHHHHHHHHHH-----
Q psy13798 11 HDKWLWKLCGSVWTGSRFYTH---I------WFKSPLSTELYQTMRRVHDAVVSVAGS--LQSTQPEVQYLKERH----- 74 (614)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~---~------~~~~~~pqdL~~~m~klhetfValAg~--lq~~H~~V~~~Keqy----- 74 (614)
.+|-=|||.|+-=.-+-|..- | |... -|-|=.+--+|.||-.|.-|-+ +++-||++|+.+||.
T Consensus 191 ~~khgwklfgkrnkQsgflattaliledRPS~LPa-KsaeEa~kHrqeyeei~~qAkkre~k~~ker~k~~eer~r~ee~ 269 (586)
T KOG2223|consen 191 ASKHGWKLFGKRNKQSGFLATTALILEDRPSNLPA-KSAEEAKKHRQEYEEIVKQAKKRERKEAKERKKMVEERNRLEER 269 (586)
T ss_pred hhhhhhhhhcccccccchhhhhhhhhcCCCCCCCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 456689999983222222211 2 2222 2345555566778888888864 788999999988887
Q ss_pred -----hhhhhhhhcCCCcccccccCCC--CCCCCCC
Q psy13798 75 -----LQLRQTYLKDSTNVFDVERGGR--DTKLPRD 103 (614)
Q Consensus 75 -----L~~Rr~~l~D~tdvFe~~~~~~--~~~~~~~ 103 (614)
+.+-+.+|..=-|.-+++|... ||-+|.-
T Consensus 270 ~~~~v~vW~~eILpnWe~m~~SrR~relWwQGiP~~ 305 (586)
T KOG2223|consen 270 IAYAVNVWENEILPNWEDMLKSRRVRELWWQGIPPS 305 (586)
T ss_pred HHHHHHHHHHHhccchHHHHhhHHHHHHHHccCChh
Confidence 2233455555555555555432 6777733
No 190
>PF14182 YgaB: YgaB-like protein
Probab=20.84 E-value=99 Score=27.71 Aligned_cols=43 Identities=16% Similarity=0.370 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHhhhhhhhhcCCCc
Q psy13798 40 TELYQTMRRVHDAVVSVAGSLQSTQPEVQYLKERHLQLRQTYLKDSTN 87 (614)
Q Consensus 40 qdL~~~m~klhetfValAg~lq~~H~~V~~~KeqyL~~Rr~~l~D~td 87 (614)
|++.+-+++||+- ++|++||++|...|.+--..+|.|-+-.-.
T Consensus 27 qeIE~eL~~l~~e-----a~l~~i~~EI~~mkk~Lk~Iq~~Fe~QTee 69 (79)
T PF14182_consen 27 QEIEKELKELERE-----AELHSIQEEISQMKKELKEIQRVFEKQTEE 69 (79)
T ss_pred HHHHHHHHHHHHH-----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666653 688999999998888877788776654433
No 191
>PRK12717 flgL flagellar hook-associated protein FlgL; Provisional
Probab=20.79 E-value=1.3e+02 Score=34.07 Aligned_cols=39 Identities=21% Similarity=0.337 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHh------hhccchhhHHHHHHHHHHhhhh
Q psy13798 40 TELYQTMRRVHDAVVSV------AGSLQSTQPEVQYLKERHLQLR 78 (614)
Q Consensus 40 qdL~~~m~klhetfVal------Ag~lq~~H~~V~~~KeqyL~~R 78 (614)
+++...|+|++|..|.- ....+.|.++|+.++|+.|++=
T Consensus 81 ~~i~~~lqr~rel~vqa~ngt~s~~dr~aia~El~~l~~~l~~~a 125 (523)
T PRK12717 81 TSINDTLQRARELAVSAGNGGLTDADRKAIASELKQIEAQLLGLM 125 (523)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777899999977743 3456788899999999988763
No 192
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=20.76 E-value=2.2e+02 Score=24.27 Aligned_cols=49 Identities=16% Similarity=0.295 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHhhhhhhhhcCCCcccc
Q psy13798 40 TELYQTMRRVHDAVVSVAGSLQSTQPEVQYLKERHLQLRQTYLKDSTNVFD 90 (614)
Q Consensus 40 qdL~~~m~klhetfValAg~lq~~H~~V~~~KeqyL~~Rr~~l~D~tdvFe 90 (614)
||+-.-+++|++.+..|..+++.+..+++.++.--=.| ..|.|.++||-
T Consensus 1 Qe~~~~~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL--~~l~~~~~~y~ 49 (106)
T PF01920_consen 1 QELQNKFQELNQQLQQLEQQIQQLERQLRELELTLEEL--EKLDDDRKVYK 49 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HTSSTT-EEEE
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhCCCcchhHH
Confidence 45555566666655555555555444444333221111 12566666764
No 193
>PRK03837 transcriptional regulator NanR; Provisional
Probab=20.69 E-value=56 Score=31.69 Aligned_cols=68 Identities=10% Similarity=-0.056 Sum_probs=37.6
Q ss_pred chhHHHHhhccccccceeeEEEeecCCChHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHhhhhhhhh
Q psy13798 11 HDKWLWKLCGSVWTGSRFYTHIWFKSPLSTELYQTMRRVHDAVVSVAGSLQSTQPEVQYLKERHLQLRQTYL 82 (614)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pqdL~~~m~klhetfValAg~lq~~H~~V~~~KeqyL~~Rr~~l 82 (614)
+.++||++|-.+|.-.+.|.+..+ ..+..... +.+-|+.+|. |-+-.......+.+++++-..++++.
T Consensus 167 ~N~~l~~~~~~l~~~~~~~~~~~~--~~~~~~~~-~~~~H~~i~~-Ai~~~d~~~a~~~~~~H~~~~~~~~~ 234 (241)
T PRK03837 167 GNPIFMAIHEALLDWLIEARPEVV--ILHGHENV-TLQEHIAIVD-AIRAHDPDEADRALQSHLNRVSALYH 234 (241)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHh--cCccchHH-HHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 357788888777754333332222 12223333 3345655543 22334666677778888877777764
No 194
>PRK06348 aspartate aminotransferase; Provisional
Probab=20.60 E-value=1.6e+02 Score=30.66 Aligned_cols=43 Identities=12% Similarity=0.116 Sum_probs=26.7
Q ss_pred hHHHHHHHHHHHHH---------HHHhhhccchhhHHHHHHHHHHhhhhhhh
Q psy13798 39 STELYQTMRRVHDA---------VVSVAGSLQSTQPEVQYLKERHLQLRQTY 81 (614)
Q Consensus 39 pqdL~~~m~klhet---------fValAg~lq~~H~~V~~~KeqyL~~Rr~~ 81 (614)
|.+|...|+++.+. -.+++.-|+..++-++.+++.|..-|+++
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~~~ 300 (384)
T PRK06348 249 PDYIIETAKIINEGICFSAPTISQRAAIYALKHRDTIVPLIKEEFQKRLEYA 300 (384)
T ss_pred CHHHHHHHHHHHHhccCCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHH
Confidence 68888888887753 13444445554555677777775555443
No 195
>PF00042 Globin: Globin plant globin signature erythrocruorin family signature alpha hemoglobin signature myoglobin signature thalassemia.; InterPro: IPR000971 Globins are haem-containing proteins involved in binding and/or transporting oxygen. They belong to a very large and well studied family that is widely distributed in many organisms []. Globins have evolved from a common ancestor and can be divided into three groups: single-domain globins, and two types of chimeric globins, flavohaemoglobins and globin-coupled sensors. Bacteria have all three types of globins, while archaea lack flavohaemoglobins, and eukaryotes lack globin-coupled sensors []. Several functionally different haemoglobins can coexist in the same species. The major types of globins include: Haemoglobin (Hb): trimer of two alpha and two beta chains, although embryonic and foetal forms can substitute the alpha or beta chain for ones with higher oxygen affinity, such as gamma, delta, epsilon or zeta chains. Hb transports oxygen from lungs to other tissues in vertebrates []. Hb proteins are also present in unicellular organisms where they act as enzymes or sensors []. Myoglobin (Mb): monomeric protein responsible for oxygen storage in vertebrate muscle []. Neuroglobin: a myoglobin-like haemprotein expressed in vertebrate brain and retina, where it is involved in neuroprotection from damage due to hypoxia or ischemia []. Neuroglobin belongs to a branch of the globin family that diverged early in evolution. Cytoglobin: an oxygen sensor expressed in multiple tissues. Related to neuroglobin []. Erythrocruorin: highly cooperative extracellular respiratory proteins found in annelids and arthropods that are assembled from as many as 180 subunit into hexagonal bilayers []. Leghaemoglobin (legHb or symbiotic Hb): occurs in the root nodules of leguminous plants, where it facilitates the diffusion of oxygen to symbiotic bacteriods in order to promote nitrogen fixation. Non-symbiotic haemoglobin (NsHb): occurs in non-leguminous plants, and can be over-expressed in stressed plants []. Flavohaemoglobins (FHb): chimeric, with an N-terminal globin domain and a C-terminal ferredoxin reductase-like NAD/FAD-binding domain. FHb provides protection against nitric oxide via its C-terminal domain, which transfers electrons to haem in the globin []. Globin-coupled sensors: chimeric, with an N-terminal myoglobin-like domain and a C-terminal domain that resembles the cytoplasmic signalling domain of bacterial chemoreceptors. They bind oxygen, and act to initiate an aerotactic response or regulate gene expression [, ]. Protoglobin: a single domain globin found in archaea that is related to the N-terminal domain of globin-coupled sensors []. Truncated 2/2 globin: lack the first helix, giving them a 2-over-2 instead of the canonical 3-over-3 alpha-helical sandwich fold. Can be divided into three main groups (I, II and II) based on structural features []. This entry covers most of the globin family of proteins, but it omits some bacterial globins and the protoglobins. More information about these proteins can be found at Protein of the Month: Haemoglobin [].; GO: 0005506 iron ion binding, 0020037 heme binding; PDB: 2WTH_A 2WTG_A 3A59_G 3FS4_C 3CY5_C 3D1A_B 2RI4_J 3EU1_B 1JEB_A 2Z6N_B ....
Probab=20.59 E-value=36 Score=28.71 Aligned_cols=12 Identities=25% Similarity=0.526 Sum_probs=6.3
Q ss_pred ccccceeeEEEe
Q psy13798 22 VWTGSRFYTHIW 33 (614)
Q Consensus 22 ~~~~~~~~~~~~ 33 (614)
...|.+||.++.
T Consensus 17 ~~~g~~~f~~lF 28 (110)
T PF00042_consen 17 DEFGSEFFQRLF 28 (110)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444556665543
No 196
>PLN02567 alpha,alpha-trehalase
Probab=20.59 E-value=1.4e+02 Score=34.29 Aligned_cols=64 Identities=16% Similarity=0.143 Sum_probs=43.1
Q ss_pred hhcccccc-ceee------EEEeecCCChHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHhhhhhhhh
Q psy13798 18 LCGSVWTG-SRFY------THIWFKSPLSTELYQTMRRVHDAVVSVAGSLQSTQPEVQYLKERHLQLRQTYL 82 (614)
Q Consensus 18 ~~~~~~~~-~~~~------~~~~~~~~~pqdL~~~m~klhetfValAg~lq~~H~~V~~~KeqyL~~Rr~~l 82 (614)
.|-|-|.- +|+. .+|--.+-+|-||---|-++.+.+-.||.+|-. .++.+..+++....|+.+.
T Consensus 299 ~aESGwDfSsRw~~~~~~l~ti~t~~i~pVDLNa~L~~~e~~LA~la~~lG~-~~~a~~~~~~A~~~~~aI~ 369 (554)
T PLN02567 299 AAESGWDFSSRWMRDGSNLTTLRTTSILPVDLNAFLLKMELDIAFFAKLLGD-KATAERFLKAAKARKRAIN 369 (554)
T ss_pred HHHcCCCchhhhccccccccccccccccCccHHHHHHHHHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHHH
Confidence 38888973 3442 233334568899999999998888888877754 3556666666666655544
No 197
>PF12872 OST-HTH: OST-HTH/LOTUS domain; PDB: 2KPM_A 3S93_B 3RCO_A 2KZV_A.
Probab=20.47 E-value=1.5e+02 Score=23.87 Aligned_cols=51 Identities=18% Similarity=0.191 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHhhhc--cchhhHHHHHHHHHH--hhhhhh-------hhcCCCccccc
Q psy13798 41 ELYQTMRRVHDAVVSVAGS--LQSTQPEVQYLKERH--LQLRQT-------YLKDSTNVFDV 91 (614)
Q Consensus 41 dL~~~m~klhetfValAg~--lq~~H~~V~~~Keqy--L~~Rr~-------~l~D~tdvFe~ 91 (614)
+|+...+.|.+.++..... -=.+.+--+.+|++| +++|+| +|+.=.|||+.
T Consensus 2 ~~~~~~~~l~~ll~~~~~~~g~v~ls~l~~~~~~~~~~f~~~~yG~~~l~~ll~~~~~~~~i 63 (74)
T PF12872_consen 2 SLEELKKLLRELLESQKGEDGWVSLSQLGQEYKKKYPDFDPRDYGFSSLSELLESLPDVVEI 63 (74)
T ss_dssp --HHHHHHHHHHHHHTCTTTSSEEHHHHHHHHHHHHTT--TCCTTSSSHHHHHHT-TTTEEE
T ss_pred hHHHHHHHHHHHHHhCcCCCceEEHHHHHHHHHHHCCCCCccccCCCcHHHHHHhCCCeEEE
Confidence 3455556666666666653 223445555566666 777654 66666788876
No 198
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=20.44 E-value=2.2e+02 Score=23.78 Aligned_cols=39 Identities=15% Similarity=0.214 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHhhhhh
Q psy13798 41 ELYQTMRRVHDAVVSVAGSLQSTQPEVQYLKERHLQLRQ 79 (614)
Q Consensus 41 dL~~~m~klhetfValAg~lq~~H~~V~~~KeqyL~~Rr 79 (614)
||...+-+=|..||..+-.|..+++.+..+++.--.+++
T Consensus 41 eLr~~V~~nY~~fI~as~~I~~m~~~~~~l~~~l~~l~~ 79 (87)
T PF08700_consen 41 ELRKLVYENYRDFIEASDEISSMENDLSELRNLLSELQQ 79 (87)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444666666666666666666655555544443
No 199
>PRK08636 aspartate aminotransferase; Provisional
Probab=20.41 E-value=1.6e+02 Score=30.91 Aligned_cols=45 Identities=16% Similarity=0.220 Sum_probs=26.7
Q ss_pred ChHHHHHHHHHHHHH---------HHHhhhccchhhHHHHHHHHHHhhhhhhhh
Q psy13798 38 LSTELYQTMRRVHDA---------VVSVAGSLQSTQPEVQYLKERHLQLRQTYL 82 (614)
Q Consensus 38 ~pqdL~~~m~klhet---------fValAg~lq~~H~~V~~~KeqyL~~Rr~~l 82 (614)
.|+||...|+++-+. -++++.-|+.-.+-++.++++|...|++++
T Consensus 262 ~~~~li~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 315 (403)
T PRK08636 262 GNKKLVGALKKIKSWLDYGMFTPIQVAATIALDGDQSCVEEIRETYRKRRDVLI 315 (403)
T ss_pred CCHHHHHHHHHHHHHhcccCChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHH
Confidence 478888888776542 123333344345557777777776666543
No 200
>PRK12860 transcriptional activator FlhC; Provisional
Probab=20.27 E-value=65 Score=32.59 Aligned_cols=43 Identities=23% Similarity=0.312 Sum_probs=31.6
Q ss_pred HHHHHHHHhhhccchhhHHHHHHHHHHhhhhhhh---------hcCCCcccc
Q psy13798 48 RVHDAVVSVAGSLQSTQPEVQYLKERHLQLRQTY---------LKDSTNVFD 90 (614)
Q Consensus 48 klhetfValAg~lq~~H~~V~~~KeqyL~~Rr~~---------l~D~tdvFe 90 (614)
+|=+.+|+|-+|||.||.+..--.|+-+.+=|.+ |.+++|.|-
T Consensus 14 ~lA~~Li~LGARlq~leset~Ls~~rl~~Lyke~~G~SpPkG~lP~S~dWF~ 65 (189)
T PRK12860 14 RLAIELIGLGARLQVLESETTLSRDRLIRLYKEVRGVSPPKGMLPFSTDWFM 65 (189)
T ss_pred HHHHHHHHcCcHHHHHHHHHCCCHHHHHHHHHHHcCCCCCCCCCCCchHHHc
Confidence 4556799999999999999887777766555443 555666665
No 201
>KOG2189|consensus
Probab=20.21 E-value=99 Score=37.26 Aligned_cols=71 Identities=14% Similarity=0.170 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHhhhccchhhHHHHHHHHHHhhhh--hhhhcCCCcccccccCC--CCCCCCCCcCCCCCCCCC
Q psy13798 43 YQTMRRVHDAVVSVAGSLQSTQPEVQYLKERHLQLR--QTYLKDSTNVFDVERGG--RDTKLPRDVEGPSPFSAG 113 (614)
Q Consensus 43 ~~~m~klhetfValAg~lq~~H~~V~~~KeqyL~~R--r~~l~D~tdvFe~~~~~--~~~~~~~~~tGPtPFs~~ 113 (614)
-+.|-+|-+.+.-|-.||.++.++-+.+|.+|+.|- |++|+...+.|+..... .+...++...++.|-...
T Consensus 91 ~~~i~dle~~l~klE~el~eln~n~~~L~~n~~eL~E~~~vl~~t~~Ff~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (829)
T KOG2189|consen 91 PREIIDLEEQLEKLESELRELNANKEALKANYNELLELKYVLEKTDEFFSTSVQESFEDDETADLGEGPLESAEK 165 (829)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhcccchhhhhcchhhhhhcccccchhcc
Confidence 456677778888888999999999999999998875 56777777788852221 233344444555554433
No 202
>PRK14549 50S ribosomal protein L29P; Provisional
Probab=20.19 E-value=74 Score=27.08 Aligned_cols=25 Identities=20% Similarity=0.213 Sum_probs=20.5
Q ss_pred cchhhHHHHHHHHHHhhhh-hhhhcC
Q psy13798 60 LQSTQPEVQYLKERHLQLR-QTYLKD 84 (614)
Q Consensus 60 lq~~H~~V~~~KeqyL~~R-r~~l~D 84 (614)
..++.++++.+|+.|++|| +...+.
T Consensus 14 ~~eL~~~l~elk~eLf~LR~q~~~~~ 39 (69)
T PRK14549 14 PEEREEKLEELKLELLKERAQAAMGG 39 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 4788999999999999999 554444
No 203
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=20.16 E-value=1.5e+02 Score=26.18 Aligned_cols=34 Identities=12% Similarity=0.248 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHH
Q psy13798 39 STELYQTMRRVHDAVVSVAGSLQSTQPEVQYLKE 72 (614)
Q Consensus 39 pqdL~~~m~klhetfValAg~lq~~H~~V~~~Ke 72 (614)
+++|.+-+++|++-.-.|..+++.+++.+..+++
T Consensus 1 ~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~ 34 (129)
T cd00890 1 LQELAAQLQQLQQQLEALQQQLQKLEAQLTEYEK 34 (129)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 204
>PF02371 Transposase_20: Transposase IS116/IS110/IS902 family; InterPro: IPR003346 Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases for IS116, IS110 and IS902. It is often found with the transposase IS111A/IS1328/IS1533 family (see IPR002525 from INTERPRO) [, ]. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated
Probab=20.13 E-value=86 Score=26.81 Aligned_cols=22 Identities=23% Similarity=0.117 Sum_probs=18.1
Q ss_pred CCcccccchhHHHHhhcccccc
Q psy13798 4 NSPIRFHHDKWLWKLCGSVWTG 25 (614)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~ 25 (614)
..+-||+++|-|+++||-...-
T Consensus 23 gd~~rF~~~~~l~~~~Gl~P~~ 44 (87)
T PF02371_consen 23 GDISRFKSAKQLASYAGLAPRP 44 (87)
T ss_pred cCchhcccchhhhhcccccccc
Confidence 3566999999999999987653
No 205
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=20.12 E-value=91 Score=24.13 Aligned_cols=23 Identities=9% Similarity=0.144 Sum_probs=17.1
Q ss_pred EEeecCCChHHHHHHHHHHHHHHH
Q psy13798 31 HIWFKSPLSTELYQTMRRVHDAVV 54 (614)
Q Consensus 31 ~~~~~~~~pqdL~~~m~klhetfV 54 (614)
-|+|--+- .|+.+++++||+.|+
T Consensus 43 ~isf~v~~-~~~~~a~~~lh~~~~ 65 (66)
T cd04919 43 NISCVIDE-KDAVKALNIIHTNLL 65 (66)
T ss_pred eEEEEEeH-HHHHHHHHHHHHHHh
Confidence 35554443 778999999999986
No 206
>PF10545 MADF_DNA_bdg: Alcohol dehydrogenase transcription factor Myb/SANT-like; InterPro: IPR006578 The MADF (myb/SANT-like domain in Adf-1) domain is an approximately 80-amino-acid module that directs sequence specific DNA binding to a site consisting of multiple tri-nucleotide repeats. The MADF domain is found in one or more copies in eukaryotic and viral proteins and is often associated with the BESS domain []. MADF is related to the Myb DNA-binding domain (IPR001005 from INTERPRO). The retroviral oncogene v-myb, and its cellular counterpart c-myb, are nuclear DNA-binding proteins that specifically recognise the sequence YAAC(G/T)G. It is likely that the MADF domain is more closely related to the myb/SANT domain than it is to other HTH domains. Some proteins known to contain a MADF domain are listed below: Drosophila Adf-1, a transcription factor first identified on the basis of its interaction with the alcohol dehydrogenase promoter but that binds the promoters of a diverse group of genes []. Drosophila Dorsal-interacting protein 3 (Dip3), which functions both as an activator to bind DNA in a sequence specific manner and a coactivator to stimulate synergistic activation by Dorsal and Twist []. Drosophila Stonewall (Stwl), a putative transcription factor required for maintenance of female germline stem cells as well as oocyte differentiation.
Probab=20.12 E-value=1.5e+02 Score=23.83 Aligned_cols=34 Identities=26% Similarity=0.249 Sum_probs=16.7
Q ss_pred HHHHHHHHhhhccchhhHHHHHHHHHHhhhhhhhh
Q psy13798 48 RVHDAVVSVAGSLQSTQPEVQYLKERHLQLRQTYL 82 (614)
Q Consensus 48 klhetfValAg~lq~~H~~V~~~KeqyL~~Rr~~l 82 (614)
.-+|.+--+|..|.. +-.|+.+|++..+||..|-
T Consensus 24 ~r~~aw~~Ia~~l~~-~~~~~~~~~~w~~Lr~~y~ 57 (85)
T PF10545_consen 24 LREEAWQEIARELGK-EFSVDDCKKRWKNLRDRYR 57 (85)
T ss_pred HHHHHHHHHHHHHcc-chhHHHHHHHHHHHHHHHH
Confidence 344555555655542 1224455555555555443
No 207
>COG3092 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.11 E-value=1.6e+02 Score=28.87 Aligned_cols=61 Identities=30% Similarity=0.428 Sum_probs=39.1
Q ss_pred hhccccccceeeEEEeecCCChHHHHHHHHHHHHHHHHhhhccchh------hHHHHHHHHHHhhhhhhhhcC
Q psy13798 18 LCGSVWTGSRFYTHIWFKSPLSTELYQTMRRVHDAVVSVAGSLQST------QPEVQYLKERHLQLRQTYLKD 84 (614)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~pqdL~~~m~klhetfValAg~lq~~------H~~V~~~KeqyL~~Rr~~l~D 84 (614)
|-|-+|.|.|-. .|||-.|..=.+.|+|.++-+---|--| ++.-+.+|.-+-.|-|.+|.|
T Consensus 82 lqGl~wlGkrai------Tpl~p~la~Wfyev~~kl~e~g~al~pv~~kP~Yq~LAdvLkrAf~qLdktfl~~ 148 (149)
T COG3092 82 LQGLWWLGKRAI------TPLPPQLAVWFYEVREKLKEAGQALAPVEEKPTYQALADVLKRAFKQLDKTFLDD 148 (149)
T ss_pred ccchhhcccccC------CCCChHHHHHHHHHHHHHHHhCCCCCcCCCCCcHHHHHHHHHHHHHHHHHHHHhc
Confidence 457778888754 4788777776666666554333333222 233466778888888888876
No 208
>PRK11414 colanic acid/biofilm transcriptional regulator; Provisional
Probab=20.05 E-value=48 Score=32.01 Aligned_cols=72 Identities=13% Similarity=0.063 Sum_probs=38.2
Q ss_pred chhHHHHhhccccccceeeEEEeecCCChHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHhhhhhhhhcC
Q psy13798 11 HDKWLWKLCGSVWTGSRFYTHIWFKSPLSTELYQTMRRVHDAVVSVAGSLQSTQPEVQYLKERHLQLRQTYLKD 84 (614)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pqdL~~~m~klhetfValAg~lq~~H~~V~~~KeqyL~~Rr~~l~D 84 (614)
|.++|++++-.+|.-.+.+.|+.+....++++.. ..+-|+.+|. |=+-+..-+..+..++++-..+|.++.|
T Consensus 147 ~N~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~H~~I~~-Ai~~~D~~~A~~~~~~hl~~~~~~~~~~ 218 (221)
T PRK11414 147 NMPILCEMIEQLWVRMGPSLHYLYEAINPAELRE-HIENYRLLLA-ALKAKDKEGCRHCLAEIMQQNVAILYQQ 218 (221)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhccCccchhh-hHHHHHHHHH-HHHcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778777777654433222111112333332 2345555443 2223355556666777777777777765
No 209
>PRK00736 hypothetical protein; Provisional
Probab=20.00 E-value=1.8e+02 Score=24.61 Aligned_cols=35 Identities=20% Similarity=0.328 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHhhhccchhhHHHHHHHHHHhhh
Q psy13798 43 YQTMRRVHDAVVSVAGSLQSTQPEVQYLKERHLQL 77 (614)
Q Consensus 43 ~~~m~klhetfValAg~lq~~H~~V~~~KeqyL~~ 77 (614)
...+..|.+.++....+|..+..+|+.++|+....
T Consensus 18 e~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00736 18 EKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSL 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46778888888888888888888888888876553
Done!