Query psy13798
Match_columns 614
No_of_seqs 111 out of 118
Neff 3.0
Searched_HMMs 29240
Date Fri Aug 16 20:45:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13798.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13798hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3t98_B Nucleoporin NUP58/NUP45 99.8 4.5E-19 1.5E-23 153.3 5.5 50 36-85 43-92 (93)
2 3mmy_B Nuclear pore complex pr 97.2 3.3E-05 1.1E-09 62.1 -0.8 43 301-343 5-56 (56)
3 2o71_A Death domain-containing 75.0 0.97 3.3E-05 40.0 1.4 53 12-74 7-59 (115)
4 2of5_A Death domain-containing 74.0 0.86 2.9E-05 40.3 0.7 53 12-74 7-59 (114)
5 1he1_A Exoenzyme S, EXOS; sign 65.7 2.5 8.4E-05 39.2 1.9 45 16-67 90-134 (135)
6 1r4t_A Exoenzyme S; EXOS, GAP, 60.8 4.5 0.00015 38.2 2.7 45 16-71 92-136 (153)
7 1y9j_A SEC1 family domain cont 60.5 0.94 3.2E-05 42.3 -1.9 39 30-76 121-159 (159)
8 3tq2_A KE1; parallel three hel 60.2 4.3 0.00015 29.7 1.9 18 60-77 3-20 (36)
9 3tsh_A Pollen allergen PHL P 4 57.0 20 0.00069 37.5 7.2 28 30-57 401-428 (500)
10 3t9o_A DGC, diguanylate cyclas 56.4 11 0.00038 33.5 4.4 51 9-59 21-89 (135)
11 2yxy_A Hypothetical conserved 53.5 16 0.00056 33.1 4.9 50 36-88 13-62 (115)
12 4ioe_A Secreted protein ESXB; 50.4 12 0.00043 29.7 3.4 47 21-74 44-93 (93)
13 1io1_A Phase 1 flagellin; beta 49.6 19 0.00066 37.5 5.5 52 40-91 30-87 (398)
14 3mtu_E Head morphogenesis prot 49.1 25 0.00084 30.0 5.0 41 41-81 27-67 (77)
15 1sf9_A YFHH hypothetical prote 47.5 25 0.00085 32.4 5.2 50 36-88 31-80 (128)
16 3oja_B Anopheles plasmodium-re 45.4 21 0.00071 37.3 5.0 38 40-77 505-542 (597)
17 1gkz_A [3-methyl-2-oxobutanoat 45.0 23 0.0008 35.1 5.1 78 5-82 19-107 (388)
18 4etp_A Kinesin-like protein KA 44.5 21 0.00072 37.2 4.9 54 40-93 6-68 (403)
19 3htk_C E3 SUMO-protein ligase 44.4 15 0.00051 37.2 3.6 36 40-75 60-95 (267)
20 4aj5_A SKA1, spindle and kinet 41.7 35 0.0012 29.9 5.0 40 40-79 33-72 (91)
21 1t2k_D Cyclic-AMP-dependent tr 40.7 39 0.0013 26.4 4.8 39 44-82 22-60 (61)
22 3zbh_A ESXA; unknown function, 40.2 32 0.0011 27.4 4.3 33 40-72 59-91 (99)
23 2vs0_A Virulence factor ESXA; 39.6 19 0.00065 28.6 2.9 49 17-73 38-89 (97)
24 3tq2_A KE1; parallel three hel 38.5 18 0.00062 26.5 2.3 32 41-72 5-36 (36)
25 2vfr_A Xylitol oxidase, aldito 36.8 41 0.0014 34.4 5.5 61 29-92 345-414 (422)
26 3iyn_Q Protein IX, PIX, hexon- 36.4 24 0.00082 32.7 3.3 26 49-74 103-128 (140)
27 1deq_A Fibrinogen (alpha chain 36.2 31 0.0011 36.7 4.5 51 39-90 62-112 (390)
28 2glo_A Brinker CG9653-PA; prot 36.2 62 0.0021 24.2 5.1 45 38-82 6-57 (59)
29 4ani_A Protein GRPE; chaperone 36.1 24 0.00083 34.5 3.5 40 48-87 63-102 (213)
30 3gwb_A Peptidase M16 inactive 35.8 19 0.00064 35.0 2.7 73 13-89 77-151 (434)
31 3jsv_C NF-kappa-B essential mo 35.5 50 0.0017 29.1 5.0 43 40-82 15-57 (94)
32 1wt6_A Myotonin-protein kinase 35.3 57 0.0019 28.1 5.2 42 40-81 27-68 (81)
33 1hjb_A Ccaat/enhancer binding 34.2 43 0.0015 28.7 4.3 40 41-80 40-79 (87)
34 3pjs_K KCSA, voltage-gated pot 33.4 39 0.0013 30.6 4.3 30 50-79 137-166 (166)
35 4aj5_1 SKA3, spindle and kinet 32.0 16 0.00056 32.5 1.4 16 60-75 44-59 (101)
36 3a6m_A Protein GRPE, HSP-70 co 31.8 7 0.00024 37.0 -1.0 33 52-84 20-59 (177)
37 1lwu_C Fibrinogen gamma chain; 31.1 48 0.0017 34.2 4.9 35 50-84 25-59 (323)
38 1o6o_D Nucleoporin NSP1; nucle 30.8 55 0.0019 29.7 4.7 6 381-386 19-24 (119)
39 1u8v_A Gamma-aminobutyrate met 30.4 23 0.0008 37.4 2.6 52 26-77 65-137 (490)
40 3gwk_C SAG1039, putative uncha 29.9 58 0.002 26.2 4.3 49 17-73 40-91 (98)
41 2f95_B Sensory rhodopsin II tr 29.7 11 0.00038 31.7 0.0 42 46-87 114-155 (163)
42 3fav_B ESAT-6, 6 kDa early sec 29.4 30 0.001 27.7 2.5 45 19-74 38-82 (94)
43 1yqh_A DUF77, IG hypothetical 29.1 18 0.00061 31.9 1.2 37 39-75 54-104 (109)
44 3a2a_A Voltage-gated hydrogen 28.9 47 0.0016 27.0 3.5 41 44-85 11-51 (58)
45 2yyk_A 4-hydroxyphenylacetate- 28.5 53 0.0018 34.6 4.8 52 24-76 61-131 (481)
46 3hm5_A DNA methyltransferase 1 28.4 88 0.003 27.2 5.3 62 8-84 18-86 (93)
47 3bre_A Probable two-component 28.3 1.2E+02 0.0041 28.9 6.8 58 32-89 119-180 (358)
48 3cx5_B Cytochrome B-C1 complex 28.3 33 0.0011 32.5 3.0 72 12-89 52-126 (352)
49 2zvf_A Alanyl-tRNA synthetase; 28.1 59 0.002 29.0 4.5 32 40-78 28-59 (171)
50 3hdi_A Processing protease; CA 27.9 32 0.0011 33.4 2.9 70 13-88 66-137 (421)
51 3htk_C E3 SUMO-protein ligase 27.3 56 0.0019 33.1 4.5 54 27-80 19-76 (267)
52 3kqg_A Langerin, C-type lectin 26.8 40 0.0014 29.7 3.1 25 45-69 17-41 (182)
53 2d4x_A Flagellar HOOK-associat 26.8 63 0.0021 30.7 4.6 52 40-91 43-100 (248)
54 3kqg_A Langerin, C-type lectin 26.8 46 0.0016 29.3 3.5 35 45-79 10-44 (182)
55 4dnd_A Syntaxin-10, SYN10; str 26.5 48 0.0016 30.0 3.5 49 37-85 60-117 (130)
56 1sqh_A Hypothetical protein CG 26.2 9.6 0.00033 37.4 -1.2 75 17-92 77-158 (312)
57 1yc9_A VCEC, multidrug resista 25.8 82 0.0028 30.9 5.4 51 41-91 351-401 (442)
58 2be3_A GTP pyrophosphokinase; 25.7 51 0.0018 31.9 3.8 45 35-79 165-209 (226)
59 2yqr_A KIAA0907 protein; struc 25.3 78 0.0027 28.2 4.6 37 30-73 74-110 (119)
60 1l8d_A DNA double-strand break 25.0 1.1E+02 0.0039 25.6 5.4 35 46-80 66-100 (112)
61 2bk9_A CG9734-PA; oxygen trans 24.9 28 0.00095 30.5 1.6 34 50-83 82-115 (153)
62 3qxl_A RAS-specific guanine nu 24.7 33 0.0011 33.8 2.3 10 72-81 164-173 (271)
63 3ljc_A ATP-dependent protease 24.7 56 0.0019 31.2 3.8 21 61-83 218-238 (252)
64 1b5p_A Protein (aspartate amin 24.4 82 0.0028 30.3 5.0 44 39-82 249-304 (385)
65 4acr_A Glypican-1; proteoglyca 24.3 44 0.0015 36.3 3.4 47 41-89 113-159 (478)
66 2wuj_A Septum site-determining 24.2 52 0.0018 25.8 2.9 36 38-73 21-56 (57)
67 3rrk_A V-type ATPase 116 kDa s 23.8 98 0.0033 30.7 5.5 39 41-79 237-279 (357)
68 3ajm_A Programmed cell death p 23.7 87 0.003 31.0 5.0 46 40-85 125-178 (213)
69 2z61_A Probable aspartate amin 23.5 1.1E+02 0.0039 28.9 5.7 44 39-82 237-290 (370)
70 3fav_A ESAT-6-like protein ESX 23.3 48 0.0016 27.1 2.7 31 44-74 54-84 (101)
71 1ek9_A Outer membrane protein 23.3 99 0.0034 29.9 5.3 51 40-90 321-371 (428)
72 2dou_A Probable N-succinyldiam 23.3 90 0.0031 29.7 5.0 44 39-82 245-297 (376)
73 2p22_C Protein SRN2; endosome, 23.1 1E+02 0.0036 29.5 5.4 44 38-81 129-174 (192)
74 1fzc_C Fibrin; blood coagulati 23.0 25 0.00084 36.2 1.1 39 46-84 13-51 (319)
75 3vmx_A Voltage-gated hydrogen 22.9 78 0.0027 24.9 3.6 40 45-85 5-44 (48)
76 3htk_A Structural maintenance 22.6 98 0.0034 23.6 4.2 38 43-80 4-41 (60)
77 1g4w_R Protein tyrosine phosph 22.4 97 0.0033 31.9 5.3 38 31-79 95-132 (383)
78 1lxn_A Hypothetical protein MT 22.2 87 0.003 26.8 4.2 34 39-72 50-97 (99)
79 1pp9_B Ubiquinol-cytochrome C 22.2 88 0.003 30.3 4.7 55 27-86 102-156 (439)
80 3tl1_A WHIE ORF VI, polyketide 22.1 68 0.0023 28.8 3.7 66 4-73 85-150 (159)
81 3v47_C Flagellin; innate immun 22.0 82 0.0028 33.7 4.8 40 40-79 42-87 (425)
82 3h6p_C ESAT-6-like protein ESX 21.9 58 0.002 26.4 2.9 30 40-69 56-85 (96)
83 3pik_A Cation efflux system pr 21.8 1.2E+02 0.004 29.8 5.5 49 42-90 356-404 (446)
84 3eff_K Voltage-gated potassium 21.8 79 0.0027 27.4 3.9 22 57-78 117-138 (139)
85 3pwx_A Putative flagellar HOOK 21.8 94 0.0032 30.0 4.8 40 40-79 45-90 (239)
86 1j32_A Aspartate aminotransfer 21.8 97 0.0033 29.6 4.9 43 39-81 252-303 (388)
87 3i94_A Phycocyanobilin:ferredo 21.7 1.2E+02 0.0041 30.1 5.6 52 32-86 163-222 (248)
88 3mhs_C SAGA-associated factor 21.6 69 0.0024 28.4 3.4 31 63-93 31-63 (99)
89 2zqm_A Prefoldin beta subunit 21.6 1.4E+02 0.0049 24.9 5.4 49 40-90 9-57 (117)
90 3d5k_A OPRM, outer membrane pr 21.5 1.1E+02 0.0037 30.6 5.3 52 40-91 363-414 (474)
91 3nmd_A CGMP dependent protein 21.5 1.2E+02 0.0041 25.5 4.7 41 39-79 21-68 (72)
92 1rtm_1 Mannose-binding protein 21.4 42 0.0014 28.7 2.1 23 57-79 3-25 (149)
93 3ami_A Zinc peptidase; alpha/b 21.4 50 0.0017 32.6 2.8 69 12-86 70-141 (445)
94 1f45_B Interleukin-12 alpha ch 21.4 50 0.0017 32.4 2.7 32 59-90 101-133 (197)
95 2yum_A ZZZ3 protein, zinc fing 21.3 74 0.0025 25.2 3.4 35 51-87 34-68 (75)
96 1lwu_C Fibrinogen gamma chain; 21.3 65 0.0022 33.2 3.8 13 184-196 158-170 (323)
97 3zbh_A ESXA; unknown function, 21.2 1.1E+02 0.0039 24.1 4.5 39 39-77 51-89 (99)
98 2kel_A SVTR protein, uncharact 21.1 80 0.0027 24.7 3.4 31 49-79 24-55 (56)
99 3b46_A Aminotransferase BNA3; 21.0 76 0.0026 31.6 4.1 44 39-82 290-344 (447)
100 3l9d_A SMU.1046C, putative GTP 21.0 64 0.0022 32.2 3.5 36 35-70 194-229 (255)
101 3r8s_Y 50S ribosomal protein L 20.9 38 0.0013 27.2 1.6 22 60-81 11-32 (63)
102 1hr6_B Beta-MPP, mitochondrial 20.5 89 0.003 30.5 4.4 68 12-85 70-139 (443)
103 3kbr_A Cyclohexadienyl dehydra 20.5 65 0.0022 28.0 3.1 14 65-78 226-239 (239)
104 4iej_A DNA methyltransferase 1 20.2 41 0.0014 29.4 1.7 42 42-83 41-85 (93)
105 1e52_A Excinuclease ABC subuni 20.0 95 0.0033 25.2 3.7 44 38-83 18-61 (63)
106 2r5u_A Replicative DNA helicas 20.0 75 0.0026 29.7 3.6 26 36-61 62-92 (200)
No 1
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=99.75 E-value=4.5e-19 Score=153.33 Aligned_cols=50 Identities=30% Similarity=0.458 Sum_probs=46.6
Q ss_pred CCChHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHhhhhhhhhcCC
Q psy13798 36 SPLSTELYQTMRRVHDAVVSVAGSLQSTQPEVQYLKERHLQLRQTYLKDS 85 (614)
Q Consensus 36 ~~~pqdL~~~m~klhetfValAg~lq~~H~~V~~~KeqyL~~Rr~~l~D~ 85 (614)
+-+||||.++|+++||+|||||+|||+||++||.+||+||+|||++|||.
T Consensus 43 ~~Tpq~L~~~l~~~h~~FiaLAa~l~~lH~~V~~~Ke~Yl~~rr~~~~d~ 92 (93)
T 3t98_B 43 HITPQDLSMAMQKIYQTFVALAAQLQSIHENVKVLKEQYLSYRKMFLGDA 92 (93)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 35799999999999999999999999999999999999999999999996
No 2
>3mmy_B Nuclear pore complex protein NUP98; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=97.23 E-value=3.3e-05 Score=62.14 Aligned_cols=43 Identities=12% Similarity=0.064 Sum_probs=33.7
Q ss_pred cccCCcccCC----CCC---CCcccccccccCCCcccC--CcccCCCCCCcc
Q psy13798 301 TGFGGFGTST----FGS---QPTQQSGLSFNSPSTTQS--GLTFGAPSGGLN 343 (614)
Q Consensus 301 ~~fs~Fg~~~----FGs---~~nq~q~isf~~py~~~s--gf~fG~~s~Gfs 343 (614)
.+|.++.++| .+. ..+.||+|++|++|+++| |||+-||.+|++
T Consensus 5 vkf~p~~~tdt~~~~g~~~~~~~~~qsIs~M~~Y~~~S~EELR~eDY~~grk 56 (56)
T 3mmy_B 5 IKFNPPTGTDTMVKAGVSTNISTKHQCITAMKEYESKSLEELRLEDYQANRK 56 (56)
T ss_dssp SCCCCCEEEEEC-----CCEEEEEECCGGGSTTTTTSCHHHHHHHHHHTTCC
T ss_pred ccccccccccchhhcCCCCccceeEEEEecchhhhcCCHHHHHHHHHHccCC
Confidence 3677777664 333 356899999999999999 999999998874
No 3
>2o71_A Death domain-containing protein cradd; raidd, apoptosis; 2.00A {Homo sapiens}
Probab=75.04 E-value=0.97 Score=39.97 Aligned_cols=53 Identities=23% Similarity=0.212 Sum_probs=40.5
Q ss_pred hhHHHHhhccccccceeeEEEeecCCChHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHH
Q psy13798 12 DKWLWKLCGSVWTGSRFYTHIWFKSPLSTELYQTMRRVHDAVVSVAGSLQSTQPEVQYLKERH 74 (614)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~pqdL~~~m~klhetfValAg~lq~~H~~V~~~Keqy 74 (614)
+++.||+|+ |||-+.|+.++|....++|-....-||.+|.--...|+.+|++|
T Consensus 7 ~~~~~~~~~----------~~~~~~~t~~~l~~Ia~~LG~~Wk~LAR~LGlse~dId~I~~~~ 59 (115)
T 2o71_A 7 GDRLTGIPS----------HILNSSPSDRQINQLAQRLGPEWEPMVLSLGLSQTDIYRCKANH 59 (115)
T ss_dssp -------------------CGGGSCCCHHHHHHHHHHCCTTHHHHHHHTTCCHHHHHHHHHHC
T ss_pred CCcccCCCc----------hhccCCCCHHHHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHC
Confidence 557788887 56678899999999999999999999999999999999999888
No 4
>2of5_A Death domain-containing protein cradd; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=73.96 E-value=0.86 Score=40.26 Aligned_cols=53 Identities=23% Similarity=0.212 Sum_probs=40.6
Q ss_pred hhHHHHhhccccccceeeEEEeecCCChHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHH
Q psy13798 12 DKWLWKLCGSVWTGSRFYTHIWFKSPLSTELYQTMRRVHDAVVSVAGSLQSTQPEVQYLKERH 74 (614)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~pqdL~~~m~klhetfValAg~lq~~H~~V~~~Keqy 74 (614)
+++.||+|+ |||-++|+.++|....++|-+...-||.+|.--...|+.+|++|
T Consensus 7 ~~~~~~~~~----------~~~~~~~t~~~l~~Ia~~lG~~Wk~LAR~LGlse~dId~I~~~~ 59 (114)
T 2of5_A 7 GDRLTGIPS----------HILNSSPSDRQINQLAQRLGPEWEPMVLSLGLSQTDIYRCKANH 59 (114)
T ss_dssp -------------------CCTTSCCCHHHHHHHHHTCCSTHHHHHHTTTCCHHHHHHHHHHC
T ss_pred CCcccCCCc----------hhhcCCCCHHHHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHC
Confidence 557788887 66778999999999999999999999999999999999999888
No 5
>1he1_A Exoenzyme S, EXOS; signaling protein, signalling complex, EXOS, RAC, pseudomonas aeruginosa, GAP, virulence factor; HET: GDP; 2.0A {Pseudomonas aeruginosa} SCOP: a.24.11.1 PDB: 1he9_A
Probab=65.73 E-value=2.5 Score=39.24 Aligned_cols=45 Identities=18% Similarity=0.189 Sum_probs=33.2
Q ss_pred HHhhccccccceeeEEEeecCCChHHHHHHHHHHHHHHHHhhhccchhhHHH
Q psy13798 16 WKLCGSVWTGSRFYTHIWFKSPLSTELYQTMRRVHDAVVSVAGSLQSTQPEV 67 (614)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~pqdL~~~m~klhetfValAg~lq~~H~~V 67 (614)
|--||..-+ -|..+-.|+||..+|++||+-+-=||---|.|-.+|
T Consensus 90 WGT~GG~~~-------~~v~~As~e~L~ea~~~lh~vm~eva~l~~av~aev 134 (135)
T 1he1_A 90 WGTTGGAAS-------QLVLDASPELRREITDQLHQVMSEVALLRQAVESEV 134 (135)
T ss_dssp HTCSSSHHH-------HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccccHHH-------HHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 666776432 388899999999999999998766665545555544
No 6
>1r4t_A Exoenzyme S; EXOS, GAP, toxin, virulence factor, signal transduction; NMR {Pseudomonas aeruginosa}
Probab=60.82 E-value=4.5 Score=38.17 Aligned_cols=45 Identities=13% Similarity=0.133 Sum_probs=31.5
Q ss_pred HHhhccccccceeeEEEeecCCChHHHHHHHHHHHHHHHHhhhccchhhHHHHHHH
Q psy13798 16 WKLCGSVWTGSRFYTHIWFKSPLSTELYQTMRRVHDAVVSVAGSLQSTQPEVQYLK 71 (614)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~pqdL~~~m~klhetfValAg~lq~~H~~V~~~K 71 (614)
|--||..-+ -|..+-.|+||..+|++||+-+-=|| -+..+||..|
T Consensus 92 WGT~GG~~~-------~~v~~AS~e~L~ea~~~lh~vm~eva----~l~~ave~ev 136 (153)
T 1r4t_A 92 WGTTGGAAS-------QLVLDASPELRREITDQLHQVMSEVA----LLRQAVESEV 136 (153)
T ss_dssp TTSSSSHHH-------HHHHHCSHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
T ss_pred hhccccHHH-------HHHHhcCHHHHHHHHHHHHHHHHHHH----HHHHHHHHHh
Confidence 566665422 48899999999999999998654444 4455555544
No 7
>1y9j_A SEC1 family domain containing protein 1; membrane traffic, SLY1, SM proteins, snares, protein protein transport; NMR {Rattus norvegicus}
Probab=60.50 E-value=0.94 Score=42.26 Aligned_cols=39 Identities=15% Similarity=0.225 Sum_probs=28.6
Q ss_pred EEEeecCCChHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHhh
Q psy13798 30 THIWFKSPLSTELYQTMRRVHDAVVSVAGSLQSTQPEVQYLKERHLQ 76 (614)
Q Consensus 30 ~~~~~~~~~pqdL~~~m~klhetfValAg~lq~~H~~V~~~KeqyL~ 76 (614)
.||.|-+++|.+| |++|.|.-+. -..|+.|+...||||+
T Consensus 121 y~i~Ft~~i~~~l---le~LA~~~~~-----~d~~~~V~~V~e~y~d 159 (159)
T 1y9j_A 121 YYLNFISAISRSK---LEDIANAALA-----ANAVTQVAKVFDQYLN 159 (159)
T ss_dssp EEEEESSCCCHHH---HHHHHHHHHT-----TTCEEEEECCSTTTCC
T ss_pred EEEEEcCCCCHHH---HHHHHhcccc-----CCcccceeeeehhhcC
Confidence 4899999999986 6777665432 2356777888888885
No 8
>3tq2_A KE1; parallel three helix bundle, de novo protein; 1.10A {Synthetic}
Probab=60.23 E-value=4.3 Score=29.74 Aligned_cols=18 Identities=33% Similarity=0.456 Sum_probs=13.5
Q ss_pred cchhhHHHHHHHHHHhhh
Q psy13798 60 LQSTQPEVQYLKERHLQL 77 (614)
Q Consensus 60 lq~~H~~V~~~KeqyL~~ 77 (614)
+..+.|+|..+|||||-|
T Consensus 3 vsalkekvsalkeqflml 20 (36)
T 3tq2_A 3 VSALKEKVSALKEQFLML 20 (36)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 345678888888888765
No 9
>3tsh_A Pollen allergen PHL P 4; flavoprotein, BI-covalent flavinylation, oxidoreductase, Glu dehydrogenase, N-glycosylation, allergy, dehydrogenase; HET: FDA; 1.90A {Phleum pratense} PDB: 3tsj_A*
Probab=57.05 E-value=20 Score=37.53 Aligned_cols=28 Identities=7% Similarity=0.192 Sum_probs=18.7
Q ss_pred EEEeecCCChHHHHHHHHHHHHHHHHhh
Q psy13798 30 THIWFKSPLSTELYQTMRRVHDAVVSVA 57 (614)
Q Consensus 30 ~~~~~~~~~pqdL~~~m~klhetfValA 57 (614)
.-.|.......+...-+|+|+|.+..++
T Consensus 401 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~ 428 (500)
T 3tsh_A 401 VNYWFAPGAAAAPLSWSKDIYNYMEPYV 428 (500)
T ss_dssp EEEECSTTCCHHHHHHHHHHHHHHGGGS
T ss_pred EEecCCcchhHHHHHHHHHHHHHHHHHh
Confidence 3347666666666667888888776654
No 10
>3t9o_A DGC, diguanylate cyclase YDEH; putative zinc sensor, CZB domain, metal protein; 2.20A {Escherichia coli}
Probab=56.43 E-value=11 Score=33.51 Aligned_cols=51 Identities=16% Similarity=0.164 Sum_probs=27.8
Q ss_pred ccchhHHHHhhccccccceee-------EEE------eecCCChH-----HHHHHHHHHHHHHHHhhhc
Q psy13798 9 FHHDKWLWKLCGSVWTGSRFY-------THI------WFKSPLST-----ELYQTMRRVHDAVVSVAGS 59 (614)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~-------~~~------~~~~~~pq-----dL~~~m~klhetfValAg~ 59 (614)
-.|.+|+++|...+..+...- .|- |+.+.-.+ .....|.+.|+.|=.+|.+
T Consensus 21 ~~H~~W~~~l~~~l~~~~~~~~~~~~~~~h~~C~lGkWy~~~~~~~~~~~~~f~~l~~~H~~~H~~a~~ 89 (135)
T 3t9o_A 21 DAHYQWLVSMFHSVVARDASKPEITDNHSYGLCQFGRWIDHLGPLDNDELPYVRLMDSAHQHMHNCGRE 89 (135)
T ss_dssp HHHHHHHHHHHHHHHHTC--------------CHHHHHHHTTCSCCTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCCcccccCCCcCccCccHHHHccCcccccccHHHHHHhHHHHHHHHHHHH
Confidence 368999999987776665432 122 77654322 2334555556665555443
No 11
>2yxy_A Hypothetical conserved protein, GK0453; alpha and beta proteins (A+B) class, structural GENO unknown function, NPPSFA; 2.20A {Geobacillus kaustophilus}
Probab=53.53 E-value=16 Score=33.13 Aligned_cols=50 Identities=10% Similarity=0.089 Sum_probs=37.6
Q ss_pred CCChHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHhhhhhhhhcCCCcc
Q psy13798 36 SPLSTELYQTMRRVHDAVVSVAGSLQSTQPEVQYLKERHLQLRQTYLKDSTNV 88 (614)
Q Consensus 36 ~~~pqdL~~~m~klhetfValAg~lq~~H~~V~~~KeqyL~~Rr~~l~D~tdv 88 (614)
.-..+||.+-|++|+|- |-=++...++.++++++..++--+-|+| |+.||
T Consensus 13 eMS~~EL~~EI~~L~ek--arKAEq~G~~nE~aV~erK~~mAksYL~-Dp~~f 62 (115)
T 2yxy_A 13 EMTKEELQQEIAMLTEK--ARKAEQMGMVNEYAVYERKIAMAKAYML-NPADF 62 (115)
T ss_dssp GCCHHHHHHHHHHHHHH--HHHHHHHTCHHHHHHHHHHHHHHHHTTS-CGGGC
T ss_pred hcCHHHHHHHHHHHHHH--HHHHHHcCCccHHHHHHHHHHHHHHHcC-CHhhc
Confidence 45789999999999996 4556777888888888877765554444 77664
No 12
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=50.37 E-value=12 Score=29.74 Aligned_cols=47 Identities=13% Similarity=0.273 Sum_probs=35.9
Q ss_pred cccccc---eeeEEEeecCCChHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHH
Q psy13798 21 SVWTGS---RFYTHIWFKSPLSTELYQTMRRVHDAVVSVAGSLQSTQPEVQYLKERH 74 (614)
Q Consensus 21 ~~~~~~---~~~~~~~~~~~~pqdL~~~m~klhetfValAg~lq~~H~~V~~~Keqy 74 (614)
+.|.|. +|+. .| +++...|+|+.|.+--++..|+.+.++++.--++|
T Consensus 44 ~~W~G~a~~af~~-~~------~~~~~~~~~~~~~L~~i~~~L~~~A~~~~~~D~~y 93 (93)
T 4ioe_A 44 GQWAGATQAKFRG-EF------IQSKQAMQQYIPILEGISTDLKRIADKFRNTDNAY 93 (93)
T ss_dssp TSSCHHHHHHHHH-HH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred hhcCchhhHHHHH-HH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 579985 3443 22 68888999999999999999999999888877776
No 13
>1io1_A Phase 1 flagellin; beta-folium, structural protein; 2.00A {Salmonella typhimurium} SCOP: e.32.1.1
Probab=49.61 E-value=19 Score=37.47 Aligned_cols=52 Identities=19% Similarity=0.225 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHhh------hccchhhHHHHHHHHHHhhhhhhhhcCCCccccc
Q psy13798 40 TELYQTMRRVHDAVVSVA------GSLQSTQPEVQYLKERHLQLRQTYLKDSTNVFDV 91 (614)
Q Consensus 40 qdL~~~m~klhetfValA------g~lq~~H~~V~~~KeqyL~~Rr~~l~D~tdvFe~ 91 (614)
+|+...|+||.|-.|.-+ ...+.|.++|++||||.+++-..+.-.-.+||+.
T Consensus 30 ~~i~~~Lqr~relavqaangt~s~~dr~ai~~Ei~~l~~ei~~ia~~t~fnG~~l~~g 87 (398)
T 1io1_A 30 NEINNNLQRVRELAVQSANSTNSQSDLDSIQAEITQRLNEIDRVSGQTQFNGVKVLAQ 87 (398)
T ss_dssp HHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHCCBTTBCTTTS
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHhhceeCCeEeecC
Confidence 577888999999888765 3567899999999999998876555556677763
No 14
>3mtu_E Head morphogenesis protein, tropomyosin alpha-1 C; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Bacillus phage PHI29}
Probab=49.10 E-value=25 Score=30.04 Aligned_cols=41 Identities=17% Similarity=0.214 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHhhhhhhh
Q psy13798 41 ELYQTMRRVHDAVVSVAGSLQSTQPEVQYLKERHLQLRQTY 81 (614)
Q Consensus 41 dL~~~m~klhetfValAg~lq~~H~~V~~~KeqyL~~Rr~~ 81 (614)
|-+.++|+|.--+|.+--.+-.+-+++...||+|+..++.+
T Consensus 27 ~~~~~~~~~~~~~~~~EKTIDDLEDkL~~eKEK~k~i~eeL 67 (77)
T 3mtu_E 27 ERTEALQQLRVNYGSFVSEYNDLEEKVAHAKEENLNMHQML 67 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 66788999999999999999999999999999999999875
No 15
>1sf9_A YFHH hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative, midwest center for structural genomics; 1.71A {Bacillus subtilis} SCOP: b.34.15.1
Probab=47.54 E-value=25 Score=32.44 Aligned_cols=50 Identities=10% Similarity=0.117 Sum_probs=36.3
Q ss_pred CCChHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHhhhhhhhhcCCCcc
Q psy13798 36 SPLSTELYQTMRRVHDAVVSVAGSLQSTQPEVQYLKERHLQLRQTYLKDSTNV 88 (614)
Q Consensus 36 ~~~pqdL~~~m~klhetfValAg~lq~~H~~V~~~KeqyL~~Rr~~l~D~tdv 88 (614)
.-..+||.+-|++|+|- |-=++...+..++++++..++--+-|+| ||.||
T Consensus 31 eMS~~EL~~EI~~L~EK--aRKAEq~Gi~NE~aV~erKi~mAkSYLv-Dp~~f 80 (128)
T 1sf9_A 31 QMTPHELNTEIALLSEK--ARKAEQHGIINELAVLERKITMAKAYLL-NPEDY 80 (128)
T ss_dssp TCCHHHHHHHHHHHHHH--HHHHHHTTCHHHHHHHHHHHHHHHHHHS-CGGGS
T ss_pred HcCHHHHHHHHHHHHHH--HHHHHHcCCccHHHHHHHHHHHHHHHcC-CHhhc
Confidence 35789999999999996 4456677788888888777665544444 66654
No 16
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=45.38 E-value=21 Score=37.28 Aligned_cols=38 Identities=11% Similarity=0.114 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHhhh
Q psy13798 40 TELYQTMRRVHDAVVSVAGSLQSTQPEVQYLKERHLQL 77 (614)
Q Consensus 40 qdL~~~m~klhetfValAg~lq~~H~~V~~~KeqyL~~ 77 (614)
++|.+.++++-|-.-.+..++|..+++++.+||+|-++
T Consensus 505 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (597)
T 3oja_B 505 DNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDL 542 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhH
Confidence 78899999999988899999999999998888888843
No 17
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A*
Probab=44.98 E-value=23 Score=35.14 Aligned_cols=78 Identities=12% Similarity=0.104 Sum_probs=36.1
Q ss_pred CcccccchhHHHHhhccccccceeeEEEee-cCCChHHHHHHHHHHHHHH-HHhhhccchhh---------HHHHHHHHH
Q psy13798 5 SPIRFHHDKWLWKLCGSVWTGSRFYTHIWF-KSPLSTELYQTMRRVHDAV-VSVAGSLQSTQ---------PEVQYLKER 73 (614)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~pqdL~~~m~klhetf-ValAg~lq~~H---------~~V~~~Keq 73 (614)
+.+.|+++.-++++...--.+-..-.-+-| +.+..+.|-+..+.||+.+ |-||.|+++++ ..|+.+.|.
T Consensus 19 ~~~~~y~~~~i~~~~~~~~~~~sl~~l~~~g~~~~~~~ll~s~~~l~~elp~rla~ri~~l~~lp~~~~~~~~i~~~~~~ 98 (388)
T 1gkz_A 19 TVTSFYNQSAIDVVAEKPSVRLTPTMMLYSGRSQDGSHLLKSGRYLQQELPVRIAHRIKGFRSLPFIIGCNPTILHVHEL 98 (388)
T ss_dssp -------------------CEESSSCEECCCCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHTSHHHHHHHHH
T ss_pred CccccccchHHHHHHcCCCCCcCHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHhhhcCchHHHHHHH
Confidence 445566555555443322222111111223 3445677788888899888 88999988873 456666677
Q ss_pred Hhhhhhhhh
Q psy13798 74 HLQLRQTYL 82 (614)
Q Consensus 74 yL~~Rr~~l 82 (614)
|+...+.++
T Consensus 99 ~~~~~~~l~ 107 (388)
T 1gkz_A 99 YIRAFQKLT 107 (388)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 765444443
No 18
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=44.53 E-value=21 Score=37.25 Aligned_cols=54 Identities=17% Similarity=0.325 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHhh---hhhhh------hcCCCccccccc
Q psy13798 40 TELYQTMRRVHDAVVSVAGSLQSTQPEVQYLKERHLQ---LRQTY------LKDSTNVFDVER 93 (614)
Q Consensus 40 qdL~~~m~klhetfValAg~lq~~H~~V~~~KeqyL~---~Rr~~------l~D~tdvFe~~~ 93 (614)
.+|+.-|++|.|....|-.+++.+-++++.++|+|+. +||.+ ||++..||--.|
T Consensus 6 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkgnIrV~vRvR 68 (403)
T 4etp_A 6 AALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRGNIRVYLRIR 68 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 5788889999999999999999999999999998876 46665 677888886333
No 19
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=44.35 E-value=15 Score=37.23 Aligned_cols=36 Identities=11% Similarity=0.088 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHh
Q psy13798 40 TELYQTMRRVHDAVVSVAGSLQSTQPEVQYLKERHL 75 (614)
Q Consensus 40 qdL~~~m~klhetfValAg~lq~~H~~V~~~KeqyL 75 (614)
.||-.-|.+.|+.++.+..++.....+|+..|++|.
T Consensus 60 ~~~v~~l~~~y~~l~~~~~~~~~~~~~~~~~K~~yk 95 (267)
T 3htk_C 60 EEQVADITSTYKLLSTYESESNSFDEHIKDLKKNFK 95 (267)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444555555555555555555554
No 20
>4aj5_A SKA1, spindle and kinetochore-associated protein 1; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=41.68 E-value=35 Score=29.89 Aligned_cols=40 Identities=18% Similarity=0.395 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHhhhhh
Q psy13798 40 TELYQTMRRVHDAVVSVAGSLQSTQPEVQYLKERHLQLRQ 79 (614)
Q Consensus 40 qdL~~~m~klhetfValAg~lq~~H~~V~~~KeqyL~~Rr 79 (614)
++|+-.|+||.+-+++|-.-|..+--.|++||++--.||.
T Consensus 33 P~lk~~L~Kig~Ei~~l~eLLn~~E~eV~~Qe~~~~sLKE 72 (91)
T 4aj5_A 33 PTLKTVLNKIGDEIIVINELLNKLELEIQYQEQTNNSLKE 72 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688889999999999999999999999999988766653
No 21
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=40.65 E-value=39 Score=26.44 Aligned_cols=39 Identities=21% Similarity=0.213 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHhhhccchhhHHHHHHHHHHhhhhhhhh
Q psy13798 44 QTMRRVHDAVVSVAGSLQSTQPEVQYLKERHLQLRQTYL 82 (614)
Q Consensus 44 ~~m~klhetfValAg~lq~~H~~V~~~KeqyL~~Rr~~l 82 (614)
.-+..|++....|-..-..++++|+.++++...||..+|
T Consensus 22 ~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ll 60 (61)
T 1t2k_D 22 VWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLLL 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 446677777777888888888888888888888887765
No 22
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=40.22 E-value=32 Score=27.39 Aligned_cols=33 Identities=12% Similarity=0.182 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHhhhccchhhHHHHHHHH
Q psy13798 40 TELYQTMRRVHDAVVSVAGSLQSTQPEVQYLKE 72 (614)
Q Consensus 40 qdL~~~m~klhetfValAg~lq~~H~~V~~~Ke 72 (614)
+++...|++|+|.+.-++..|+.+.++++...+
T Consensus 59 ~~~~~~~~~~~~~L~~i~~~L~~~a~~~~~~d~ 91 (99)
T 3zbh_A 59 QELRPSFEKMAVLLNEVGQQLHNSATILEDTDQ 91 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666655555555555555554444
No 23
>2vs0_A Virulence factor ESXA; secreted, four helical bundle, cell invasion; 1.4A {Staphylococcus aureus} PDB: 2vrz_A
Probab=39.55 E-value=19 Score=28.60 Aligned_cols=49 Identities=18% Similarity=0.362 Sum_probs=29.0
Q ss_pred Hhhccccccce---eeEEEeecCCChHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHH
Q psy13798 17 KLCGSVWTGSR---FYTHIWFKSPLSTELYQTMRRVHDAVVSVAGSLQSTQPEVQYLKER 73 (614)
Q Consensus 17 ~~~~~~~~~~~---~~~~~~~~~~~pqdL~~~m~klhetfValAg~lq~~H~~V~~~Keq 73 (614)
.|| +.|.|.- |+. .| +++...|++|++.+..++..|..++++++...++
T Consensus 38 ~L~-~~W~G~a~~af~~-~~------~~~~~~~~~~~~~L~~i~~~L~~~a~~y~~~d~~ 89 (97)
T 2vs0_A 38 EIA-ANWEGQAFSRFEE-QF------QQLSPKVEKFAQLLEEIKQQLNSTADAVQEQDQQ 89 (97)
T ss_dssp HHH-HHSCSSTTHHHHH-HH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHh-cccCcHHHHHHHH-HH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455 4788853 222 12 5677777777777777777777777766655544
No 24
>3tq2_A KE1; parallel three helix bundle, de novo protein; 1.10A {Synthetic}
Probab=38.50 E-value=18 Score=26.52 Aligned_cols=32 Identities=16% Similarity=0.232 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHhhhccchhhHHHHHHHH
Q psy13798 41 ELYQTMRRVHDAVVSVAGSLQSTQPEVQYLKE 72 (614)
Q Consensus 41 dL~~~m~klhetfValAg~lq~~H~~V~~~Ke 72 (614)
.|+.-...|.|.|+-|-=++..+.|+|..+||
T Consensus 5 alkekvsalkeqflmlmfkvsalkekvsalke 36 (36)
T 3tq2_A 5 ALKEKVSALKEQFLMLMFKVSALKEKVSALKE 36 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45666666777777776666666666666664
No 25
>2vfr_A Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, flavin, flavoprotein, oxidoreductase; HET: FAD; 1.1A {Streptomyces coelicolor} PDB: 2vfs_A* 2vft_A* 2vfu_A* 2vfv_A*
Probab=36.75 E-value=41 Score=34.40 Aligned_cols=61 Identities=16% Similarity=0.206 Sum_probs=37.0
Q ss_pred eEEEeecCCChHHHHHHHHHHHHHHHHhhhccc---hhhHHHHHHH------HHHhhhhhhhhcCCCcccccc
Q psy13798 29 YTHIWFKSPLSTELYQTMRRVHDAVVSVAGSLQ---STQPEVQYLK------ERHLQLRQTYLKDSTNVFDVE 92 (614)
Q Consensus 29 ~~~~~~~~~~pqdL~~~m~klhetfValAg~lq---~~H~~V~~~K------eqyL~~Rr~~l~D~tdvFe~~ 92 (614)
--|++.+.. .+.+..-|++|.|-++..-||+| .-+..-|.++ +.|+.+||.| ||.++|.+.
T Consensus 345 ~l~~~~~~~-~~~~~~~~~~~~~lv~~~gG~~~wgk~~~~~~~~~~~~Yp~~~~f~~vk~~~--DP~g~f~n~ 414 (422)
T 2vfr_A 345 AAHFTWVED-TAAVLPVVRRLEEALVPFAARPHWGKVFTVPAGELRALYPRLADFGALAGAL--DPAGKFTNA 414 (422)
T ss_dssp EEEEEECSC-HHHHHHHHHHHHHHHGGGTCEECTTSCCCCCHHHHHTTCTTHHHHHHHHHHH--CTTCTTCCH
T ss_pred EEEEecCCC-chhHHHHHHHHHHHHHHcCCcccccccCCCCHHHHHHHCcCHHHHHHHHHHh--CCCCccCCH
Confidence 456665544 34455677788777777888877 1111223333 3456666654 999999853
No 26
>3iyn_Q Protein IX, PIX, hexon-associated protein; cryoem, 3D reconstruction, FULL-ATOM model interaction network, capsid protein, hexon protein; 3.60A {Human adenovirus 5}
Probab=36.43 E-value=24 Score=32.72 Aligned_cols=26 Identities=12% Similarity=0.166 Sum_probs=17.1
Q ss_pred HHHHHHHhhhccchhhHHHHHHHHHH
Q psy13798 49 VHDAVVSVAGSLQSTQPEVQYLKERH 74 (614)
Q Consensus 49 lhetfValAg~lq~~H~~V~~~Keqy 74 (614)
|-.-+-+|..||+++.++|+++.||-
T Consensus 103 ~laqLe~ls~qL~~ls~~v~~L~~q~ 128 (140)
T 3iyn_Q 103 LLAQLDSLTRELNVVSQQLLDLRQQV 128 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444567777777777777777664
No 27
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=36.25 E-value=31 Score=36.75 Aligned_cols=51 Identities=8% Similarity=0.199 Sum_probs=36.7
Q ss_pred hHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHhhhhhhhhcCCCcccc
Q psy13798 39 STELYQTMRRVHDAVVSVAGSLQSTQPEVQYLKERHLQLRQTYLKDSTNVFD 90 (614)
Q Consensus 39 pqdL~~~m~klhetfValAg~lq~~H~~V~~~KeqyL~~Rr~~l~D~tdvFe 90 (614)
-+||+..|.+|-+.+.-|--.--++|+-|+.+|| ||.-|..-.+|+.|||.
T Consensus 62 er~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~-~lk~~~~q~~dndn~~~ 112 (390)
T 1deq_A 62 DQDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVE-LMRGDFAKANNNDNTFK 112 (390)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH-HHHHHHHhhccchHHHH
Confidence 3788888888888888877777777877777775 45555556666666664
No 28
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=36.15 E-value=62 Score=24.19 Aligned_cols=45 Identities=9% Similarity=0.045 Sum_probs=32.3
Q ss_pred ChHHHHHHHHHHHHH-------HHHhhhccchhhHHHHHHHHHHhhhhhhhh
Q psy13798 38 LSTELYQTMRRVHDA-------VVSVAGSLQSTQPEVQYLKERHLQLRQTYL 82 (614)
Q Consensus 38 ~pqdL~~~m~klhet-------fValAg~lq~~H~~V~~~KeqyL~~Rr~~l 82 (614)
.+.|+++.++++++. ...||.+|.--+..|..-+.+|-++|+-+-
T Consensus 6 ys~efK~~~~~~~~~g~s~~~~~~~vA~~~gIs~~tl~~W~~~~~~~~~~~~ 57 (59)
T 2glo_A 6 FTPHFKLQVLESYRNDNDCKGNQRATARKYNIHRRQIQKWLQCESNLRSSVA 57 (59)
T ss_dssp CCHHHHHHHHHHHHHCTTTTTCHHHHHHHTTSCHHHHHHHHTTHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHcCCCcchHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHh
Confidence 467888777666664 667776665445678888889999998763
No 29
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=36.14 E-value=24 Score=34.50 Aligned_cols=40 Identities=8% Similarity=0.097 Sum_probs=25.9
Q ss_pred HHHHHHHHhhhccchhhHHHHHHHHHHhhhhhhhhcCCCc
Q psy13798 48 RVHDAVVSVAGSLQSTQPEVQYLKERHLQLRQTYLKDSTN 87 (614)
Q Consensus 48 klhetfValAg~lq~~H~~V~~~KeqyL~~Rr~~l~D~td 87 (614)
+|-+.+..|-.+|.++..++..++-.|-||||+.-||--+
T Consensus 63 ~l~~~l~~l~~e~~el~d~~lR~~AEfeN~RkR~~rE~e~ 102 (213)
T 4ani_A 63 AAKAQIAELEAKLSEMEHRYLRLYADFENFRRRTRQEMEA 102 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455566666666666666677777899987665433
No 30
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens}
Probab=35.81 E-value=19 Score=34.99 Aligned_cols=73 Identities=8% Similarity=0.004 Sum_probs=41.8
Q ss_pred hHHHHhhcccccc-ceeeEEEeecCCCh-HHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHhhhhhhhhcCCCccc
Q psy13798 13 KWLWKLCGSVWTG-SRFYTHIWFKSPLS-TELYQTMRRVHDAVVSVAGSLQSTQPEVQYLKERHLQLRQTYLKDSTNVF 89 (614)
Q Consensus 13 ~~~~~~~~~~~~~-~~~~~~~~~~~~~p-qdL~~~m~klhetfValAg~lq~~H~~V~~~KeqyL~~Rr~~l~D~tdvF 89 (614)
++|-++.+++-.. ++-++.+.++.+-. ++|..+|+.|.|.+.... +.+ +.++..|++.++-+|.+.+||..++
T Consensus 77 ~~l~~~g~~~~a~t~~~~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~--f~~--~~~~~~~~~~~~e~~~~~~~p~~~~ 151 (434)
T 3gwb_A 77 QGFEGLGADFGNGAYKDMAVASLRSLSAVDKREPALKLFAEVVGKPT--FPA--DSLARIKNQMLAGFEYQKQNPGKLA 151 (434)
T ss_dssp HHHHTTTCEEEEEECSSCEEEEEEEECSHHHHHHHHHHHHHHHHSCC--CCH--HHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHhCCEEEeeecCCeEEEEEEecCccccHHHHHHHHHHHHhCCC--CCH--HHHHHHHHHHHHHHHHhhcCHHHHH
Confidence 4444444433221 23455666666443 459999999999886543 332 5566666666665555555554433
No 31
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=35.55 E-value=50 Score=29.06 Aligned_cols=43 Identities=14% Similarity=0.098 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHhhhhhhhh
Q psy13798 40 TELYQTMRRVHDAVVSVAGSLQSTQPEVQYLKERHLQLRQTYL 82 (614)
Q Consensus 40 qdL~~~m~klhetfValAg~lq~~H~~V~~~KeqyL~~Rr~~l 82 (614)
.|+-..|+..-+-+-....++...++.|+.+|.|-.-||.-|.
T Consensus 15 EeaL~~kq~~id~lke~~~q~~~~~E~i~vLk~Qv~IY~~DF~ 57 (94)
T 3jsv_C 15 EEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQ 57 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777777777888888888999999999988887653
No 32
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=35.28 E-value=57 Score=28.08 Aligned_cols=42 Identities=17% Similarity=0.222 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHhhhhhhh
Q psy13798 40 TELYQTMRRVHDAVVSVAGSLQSTQPEVQYLKERHLQLRQTY 81 (614)
Q Consensus 40 qdL~~~m~klhetfValAg~lq~~H~~V~~~KeqyL~~Rr~~ 81 (614)
|-|+.-|.|+-+..|++.-+|++.+.+-+.+.++.-++|+..
T Consensus 27 Q~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~ 68 (81)
T 1wt6_A 27 QSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERM 68 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666789999999999999999999888888888888765
No 33
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=34.21 E-value=43 Score=28.74 Aligned_cols=40 Identities=13% Similarity=0.130 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHhhhhhh
Q psy13798 41 ELYQTMRRVHDAVVSVAGSLQSTQPEVQYLKERHLQLRQT 80 (614)
Q Consensus 41 dL~~~m~klhetfValAg~lq~~H~~V~~~KeqyL~~Rr~ 80 (614)
|+.+-+..|-+-=..|=.+|+.+..+|+.+|+.+++++-.
T Consensus 40 e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~p~~ 79 (87)
T 1hjb_A 40 ETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQLPEP 79 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcHH
Confidence 3334444444444444444444444444444444444443
No 34
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=33.36 E-value=39 Score=30.55 Aligned_cols=30 Identities=10% Similarity=0.029 Sum_probs=22.4
Q ss_pred HHHHHHhhhccchhhHHHHHHHHHHhhhhh
Q psy13798 50 HDAVVSVAGSLQSTQPEVQYLKERHLQLRQ 79 (614)
Q Consensus 50 hetfValAg~lq~~H~~V~~~KeqyL~~Rr 79 (614)
++..-.+..++.+++++|+.++++.-++||
T Consensus 137 ~~~~~~l~~~i~~L~~~l~~le~~~~~~r~ 166 (166)
T 3pjs_K 137 KAAEEAYTRTTRALHERFDRLERMLDDNRR 166 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 334556777778888888888888887775
No 35
>4aj5_1 SKA3, spindle and kinetochore-associated protein 3; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=32.00 E-value=16 Score=32.45 Aligned_cols=16 Identities=38% Similarity=0.320 Sum_probs=12.7
Q ss_pred cchhhHHHHHHHHHHh
Q psy13798 60 LQSTQPEVQYLKERHL 75 (614)
Q Consensus 60 lq~~H~~V~~~KeqyL 75 (614)
||.+|.+|++||+|-=
T Consensus 44 lhdl~seV~~LK~dv~ 59 (101)
T 4aj5_1 44 LYDLHSEVQTLKDDIN 59 (101)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6778999999988753
No 36
>3a6m_A Protein GRPE, HSP-70 cofactor; coiled-coil, four-helix bundle, dimer, chaperone, STRE response; 3.23A {Thermus thermophilus}
Probab=31.79 E-value=7 Score=37.00 Aligned_cols=33 Identities=18% Similarity=0.343 Sum_probs=19.1
Q ss_pred HHHHhhhccchhhHHHHHHHHHHh-------hhhhhhhcC
Q psy13798 52 AVVSVAGSLQSTQPEVQYLKERHL-------QLRQTYLKD 84 (614)
Q Consensus 52 tfValAg~lq~~H~~V~~~KeqyL-------~~Rr~~l~D 84 (614)
..-+|..+|..+.++++.+|++|| ||||+.-||
T Consensus 20 e~~~l~~~~~~l~~e~~e~~d~~lR~~Ae~eN~rkR~~rE 59 (177)
T 3a6m_A 20 EAQALEERLKAAEEELKGLKDKYLRLLADFDNYRKRMEEE 59 (177)
T ss_dssp HHSSTTTSTTGGGGTSSSHHHHHHTTTTTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555556666666666654 677766655
No 37
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=31.06 E-value=48 Score=34.16 Aligned_cols=35 Identities=17% Similarity=0.235 Sum_probs=24.0
Q ss_pred HHHHHHhhhccchhhHHHHHHHHHHhhhhhhhhcC
Q psy13798 50 HDAVVSVAGSLQSTQPEVQYLKERHLQLRQTYLKD 84 (614)
Q Consensus 50 hetfValAg~lq~~H~~V~~~KeqyL~~Rr~~l~D 84 (614)
-+.+..|-.+|+++.++|+.||++...|++...+.
T Consensus 25 ~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~~~~~ 59 (323)
T 1lwu_C 25 DAQIQELSEMWRVNQQFVTRLQQQLVDIRQTCSRP 59 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34444566666666777888888888888776554
No 38
>1o6o_D Nucleoporin NSP1; nuclear transport, nuclear trafficking, transport factor, repeat, protein transport; 2.80A {Saccharomyces cerevisiae}
Probab=30.85 E-value=55 Score=29.68 Aligned_cols=6 Identities=33% Similarity=0.977 Sum_probs=3.0
Q ss_pred CcccCC
Q psy13798 381 GLNFGT 386 (614)
Q Consensus 381 GF~FGt 386 (614)
.|+||.
T Consensus 19 aFSFG~ 24 (119)
T 1o6o_D 19 AFSFGA 24 (119)
T ss_pred cccccC
Confidence 355554
No 39
>1u8v_A Gamma-aminobutyrate metabolism dehydratase/isomerase; ALFA-helixes, beta-strands, lyase; HET: FAD; 1.60A {Clostridium aminobutyricum} SCOP: a.29.3.1 e.6.1.1
Probab=30.45 E-value=23 Score=37.42 Aligned_cols=52 Identities=10% Similarity=0.015 Sum_probs=29.3
Q ss_pred ceeeEEEeec-CCChHHHHHHHHH--------------H--HHHHHHhhhccchhhHH----HHHHHHHHhhh
Q psy13798 26 SRFYTHIWFK-SPLSTELYQTMRR--------------V--HDAVVSVAGSLQSTQPE----VQYLKERHLQL 77 (614)
Q Consensus 26 ~~~~~~~~~~-~~~pqdL~~~m~k--------------l--hetfValAg~lq~~H~~----V~~~KeqyL~~ 77 (614)
.+=..|.|++ .++++||..-.+. . +|.|.+++--..++-++ -++|||+||..
T Consensus 65 ~g~~v~~~~~~~~~~edL~~~~~~~~lw~~~~~g~~grs~~~~~~n~~~~~~~~~~~~~Gt~~~eqk~~~L~~ 137 (490)
T 1u8v_A 65 IGKTINRFANLHQSTDDLRKKVKMQRLLGQKTASCFQRCVGMDAFNAVFSTTYEIDQKYGTNYHKNFTEYLKY 137 (490)
T ss_dssp TSSEEEGGGCCCCSHHHHHHHHHHHHHHHHHHSSCCCTHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred CCCcccccccCCCCHHHHHHHHHHHHHHHhhCCCcCcCCccHHHHHHHHHHHHhHHHHhCCCHHHHHHHHHHH
Confidence 3446677776 6788999875442 2 44444444222222212 26899999863
No 40
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=29.94 E-value=58 Score=26.21 Aligned_cols=49 Identities=14% Similarity=0.206 Sum_probs=33.9
Q ss_pred Hhhccccccce---eeEEEeecCCChHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHH
Q psy13798 17 KLCGSVWTGSR---FYTHIWFKSPLSTELYQTMRRVHDAVVSVAGSLQSTQPEVQYLKER 73 (614)
Q Consensus 17 ~~~~~~~~~~~---~~~~~~~~~~~pqdL~~~m~klhetfValAg~lq~~H~~V~~~Keq 73 (614)
.|| +.|.|.- |+. . =+++...|++++|.+.-++..|..+.++++...++
T Consensus 40 ~l~-~~W~G~a~~aF~~-~------~~~~~~~~~~~~~~L~~i~~~L~~~a~~~~~~D~~ 91 (98)
T 3gwk_C 40 VID-ENWDGSTFDSFEA-Q------FNELSPKITEFAQLLEDINQQLLKVADIIEQTDAD 91 (98)
T ss_dssp HHH-HHBCSSTTHHHHH-H------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH-cccCcHHHHHHHH-H------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344 5799863 332 1 25788888888888888888888777777766554
No 41
>2f95_B Sensory rhodopsin II transducer; membrane protein complex, signal transduction, photocycle ST membrane protein; HET: BOG RET; 2.20A {Natronomonas pharaonis} SCOP: f.17.4.1
Probab=29.71 E-value=11 Score=31.71 Aligned_cols=42 Identities=14% Similarity=0.119 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhccchhhHHHHHHHHHHhhhhhhhhcCCCc
Q psy13798 46 MRRVHDAVVSVAGSLQSTQPEVQYLKERHLQLRQTYLKDSTN 87 (614)
Q Consensus 46 m~klhetfValAg~lq~~H~~V~~~KeqyL~~Rr~~l~D~td 87 (614)
+.+|.+.|-.++.+|++.-++++..+|+.-.-||....|..+
T Consensus 114 i~~L~~~~n~m~~~l~~~~~~~~~~~~~~~~~~~ea~~~~~~ 155 (163)
T 2f95_B 114 IGDLYAAFDEMRQSVRTSLEDAKNAREDAEQAQKRAEEINTN 155 (163)
T ss_dssp ------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 445555666666666666666666666666666655555443
No 42
>3fav_B ESAT-6, 6 kDa early secretory antigenic target; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_B
Probab=29.39 E-value=30 Score=27.74 Aligned_cols=45 Identities=11% Similarity=0.175 Sum_probs=20.3
Q ss_pred hccccccceeeEEEeecCCChHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHH
Q psy13798 19 CGSVWTGSRFYTHIWFKSPLSTELYQTMRRVHDAVVSVAGSLQSTQPEVQYLKERH 74 (614)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~pqdL~~~m~klhetfValAg~lq~~H~~V~~~Keqy 74 (614)
+-+.|.|.-. +-....++|+++.+.-|..-|++|.+.|+.-.+.|
T Consensus 38 l~~~W~G~A~-----------~af~~~~~~w~~~~~~~~~~L~~i~~~l~~~~~~y 82 (94)
T 3fav_B 38 LAAAWGGSGS-----------EAYQGVQQKWDATATELNNALQNLARTISEAGQAM 82 (94)
T ss_dssp TGGGGTCTTC-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHcccCcHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566877532 22333444444444444444444444444444444
No 43
>1yqh_A DUF77, IG hypothetical 16092; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.70A {Bacillus cereus atcc 14579} SCOP: d.58.48.1
Probab=29.15 E-value=18 Score=31.89 Aligned_cols=37 Identities=16% Similarity=0.219 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHHHHHHHh-hhcc-------------chhhHHHHHHHHHHh
Q psy13798 39 STELYQTMRRVHDAVVSV-AGSL-------------QSTQPEVQYLKERHL 75 (614)
Q Consensus 39 pqdL~~~m~klhetfVal-Ag~l-------------q~~H~~V~~~KeqyL 75 (614)
-+||..+++++||..+.+ +.|+ +.+.+||+.++|.|.
T Consensus 54 ~devm~vv~~~~e~~~~~G~~RV~t~iKId~R~dk~~t~~~Kv~~v~~~~~ 104 (109)
T 1yqh_A 54 LDVLLDVVKRAQQACVDAGAEEVITSIKIHYRPSTGVTIDEKVWKYRDEYA 104 (109)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEEEEEEEECCTTTCCCHHHHHGGGCTTCC
T ss_pred HHHHHHHHHHHHHHHHHcCCCeEEEEEEEEecCCCCCCHHHHHHHHHhCCC
Confidence 589999999999998876 5554 455666666555553
No 44
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=28.91 E-value=47 Score=26.96 Aligned_cols=41 Identities=17% Similarity=0.198 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHhhhccchhhHHHHHHHHHHhhhhhhhhcCC
Q psy13798 44 QTMRRVHDAVVSVAGSLQSTQPEVQYLKERHLQLRQTYLKDS 85 (614)
Q Consensus 44 ~~m~klhetfValAg~lq~~H~~V~~~KeqyL~~Rr~~l~D~ 85 (614)
+-|.||-|.=+.||.++|.+ |.--..|||-+.--+.+|||-
T Consensus 11 ~q~~kLKq~n~~L~~kv~~L-e~~c~e~eQEieRL~~LLkqH 51 (58)
T 3a2a_A 11 RQLLRLKQMNVQLAAKIQHL-EFSCSEKEQEIERLNKLLRQH 51 (58)
T ss_dssp CHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHc
Confidence 35778888888888888888 445567888877777788875
No 45
>2yyk_A 4-hydroxyphenylacetate-3-hydroxylase; structurome, riken spring-8 center, oxygnase component, 4- hydroxyphenylacetate 3-monooxygenase; 1.60A {Thermus thermophilus} PDB: 2yyl_A* 2yym_A* 2yyi_A* 2yyg_A* 2yyj_A*
Probab=28.51 E-value=53 Score=34.60 Aligned_cols=52 Identities=12% Similarity=-0.043 Sum_probs=34.0
Q ss_pred ccceeeEEEeec-CCChHHHHHHHHH----------------HH--HHHHHhhhccchhhHHHHHHHHHHhh
Q psy13798 24 TGSRFYTHIWFK-SPLSTELYQTMRR----------------VH--DAVVSVAGSLQSTQPEVQYLKERHLQ 76 (614)
Q Consensus 24 ~~~~~~~~~~~~-~~~pqdL~~~m~k----------------lh--etfValAg~lq~~H~~V~~~KeqyL~ 76 (614)
...+-..|.|++ .++++||..-.+. .+ +.|.++|--...+. +..+|||+||.
T Consensus 61 ~~~g~~v~~~~~~~~~~~dL~~~~~~~~lw~~~~~g~~gRs~~~~~~~~~~~a~~~~~~~-~~~eqk~~~L~ 131 (481)
T 2yyk_A 61 EEEGKRHGMSFLIPKTKEDLKRRGQAYKLWADQNLGMMGRSPDYLNAVVMAYAASADYFG-EFAENVRNYYR 131 (481)
T ss_dssp EETTEEEEGGGCCCCSHHHHHHHHHHHHHHHHHTTTCCCCCTHHHHHHHHHHHHTGGGGG-GGHHHHHHHHH
T ss_pred CCCCCCccchhcCCCCHHHHHHHHHHHHHHhhcCCcccccChhhHHHHHHhccCChHHHH-HHHHHHHHHHH
Confidence 444556788777 5789999875442 13 66666666443333 35789999986
No 46
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=28.37 E-value=88 Score=27.16 Aligned_cols=62 Identities=15% Similarity=0.225 Sum_probs=45.0
Q ss_pred cccchhHHHHhhccccccceeeEEEeecCCChHHHHHHHHHHHH----HHHHhhhccch---hhHHHHHHHHHHhhhhhh
Q psy13798 8 RFHHDKWLWKLCGSVWTGSRFYTHIWFKSPLSTELYQTMRRVHD----AVVSVAGSLQS---TQPEVQYLKERHLQLRQT 80 (614)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pqdL~~~m~klhe----tfValAg~lq~---~H~~V~~~KeqyL~~Rr~ 80 (614)
+|-.|.|.--||-.-|| .|-+.-|-.|++ -||.++-|+.. ....|+.+||+|-.+-|.
T Consensus 18 ~yt~eeY~~~L~~~~WT---------------kEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~ 82 (93)
T 3hm5_A 18 VYSEQEYQLYLHDDAWT---------------KAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAK 82 (93)
T ss_dssp CCCHHHHHHHTCBTTBC---------------HHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHcCCCCCC---------------HHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHH
Confidence 67778888778876665 344444445555 47999999953 347899999999998887
Q ss_pred hhcC
Q psy13798 81 YLKD 84 (614)
Q Consensus 81 ~l~D 84 (614)
+++.
T Consensus 83 l~~~ 86 (93)
T 3hm5_A 83 LANV 86 (93)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7654
No 47
>3bre_A Probable two-component response regulator; protein-nucleotide complex, signaling protein; HET: C2E; 2.40A {Pseudomonas aeruginosa} PDB: 3i5a_A*
Probab=28.32 E-value=1.2e+02 Score=28.92 Aligned_cols=58 Identities=21% Similarity=0.228 Sum_probs=33.1
Q ss_pred EeecCCChHHHHHHHHHHHHHHHHhhh---ccchhhHHHHHHHHHHhhhhhhhhcCC-Cccc
Q psy13798 32 IWFKSPLSTELYQTMRRVHDAVVSVAG---SLQSTQPEVQYLKERHLQLRQTYLKDS-TNVF 89 (614)
Q Consensus 32 ~~~~~~~pqdL~~~m~klhetfValAg---~lq~~H~~V~~~KeqyL~~Rr~~l~D~-tdvF 89 (614)
+..|...+.||...++++-+....+-. +.+.+.+..+.++|....+|+....|+ |.+.
T Consensus 119 ~l~Kp~~~~~l~~~v~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~D~lTgl~ 180 (358)
T 3bre_A 119 YLVKLPDAIELVARIRYHSRSYIALQQRDEAYRALRESQQQLLETNLVLQRLMNSDGLTGLS 180 (358)
T ss_dssp EEESCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHBCTTTCSB
T ss_pred EeeccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence 345766788999998887554443322 223333444444555555666666676 4443
No 48
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B* 1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B*
Probab=28.27 E-value=33 Score=32.51 Aligned_cols=72 Identities=13% Similarity=-0.031 Sum_probs=41.9
Q ss_pred hhHHHHhhccc--cccceeeEEEeecCCChHHHHHHHHHHHHHHHHhhhccchhhHHHH-HHHHHHhhhhhhhhcCCCcc
Q psy13798 12 DKWLWKLCGSV--WTGSRFYTHIWFKSPLSTELYQTMRRVHDAVVSVAGSLQSTQPEVQ-YLKERHLQLRQTYLKDSTNV 88 (614)
Q Consensus 12 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~pqdL~~~m~klhetfValAg~lq~~H~~V~-~~KeqyL~~Rr~~l~D~tdv 88 (614)
++.+-++.+++ ++ ++-|+.+.++. ++.||..+|+-|+|.+.... + -.++|+ ..|++.++.+|.+..||.++
T Consensus 52 ~~~l~~~G~~~na~t-~~~~t~~~~~~-~~~~l~~~l~ll~d~~~~p~--f--~~~~~~~~~k~~v~~e~~~~~~~p~~~ 125 (352)
T 3cx5_B 52 VRESELLGGTFKSTL-DREYITLKATF-LKDDLPYYVNALADVLYKTA--F--KPHELTESVLPAARYDYAVAEQCPVKS 125 (352)
T ss_dssp HHHHHHHTCEEEEEE-CSSCEEEEEEE-EGGGHHHHHHHHHHHHHHBC--C--CHHHHHHTHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHhCCeEEEEE-ccceEEEEEEe-chhhHHHHHHHHHHHHhCCC--C--CHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 34454554443 33 23455566554 46789999999999876543 2 134454 55666666666555555544
Q ss_pred c
Q psy13798 89 F 89 (614)
Q Consensus 89 F 89 (614)
.
T Consensus 126 ~ 126 (352)
T 3cx5_B 126 A 126 (352)
T ss_dssp H
T ss_pred H
Confidence 3
No 49
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=28.14 E-value=59 Score=29.01 Aligned_cols=32 Identities=22% Similarity=0.296 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHhhhh
Q psy13798 40 TELYQTMRRVHDAVVSVAGSLQSTQPEVQYLKERHLQLR 78 (614)
Q Consensus 40 qdL~~~m~klhetfValAg~lq~~H~~V~~~KeqyL~~R 78 (614)
.||...+++|.|.. .++..+++.+|++++.++
T Consensus 28 ~~l~~~v~~l~~e~-------k~l~ke~~~l~~~~a~~~ 59 (171)
T 2zvf_A 28 AKLPKTVERFFEEW-------KDQRKEIERLKSVIADLW 59 (171)
T ss_dssp TSHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 46666666666653 444555555555555554
No 50
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125}
Probab=27.86 E-value=32 Score=33.44 Aligned_cols=70 Identities=16% Similarity=0.234 Sum_probs=41.9
Q ss_pred hHHHHhhccc--cccceeeEEEeecCCChHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHhhhhhhhhcCCCcc
Q psy13798 13 KWLWKLCGSV--WTGSRFYTHIWFKSPLSTELYQTMRRVHDAVVSVAGSLQSTQPEVQYLKERHLQLRQTYLKDSTNV 88 (614)
Q Consensus 13 ~~~~~~~~~~--~~~~~~~~~~~~~~~~pqdL~~~m~klhetfValAg~lq~~H~~V~~~KeqyL~~Rr~~l~D~tdv 88 (614)
+.|-++.+++ +++ +-++.+.++. ++++|..+|+.|.|.+.... +. .+.|+..|++.++-+|.+.+||..+
T Consensus 66 ~~l~~~G~~~na~t~-~d~t~~~~~~-~~~~l~~~l~ll~d~~~~p~--f~--~~~~~~ek~~v~~e~~~~~~~p~~~ 137 (421)
T 3hdi_A 66 EFFDSIGGQVNAFTS-KEYTCYYAKV-LDDHAGQAIDTLSDMFFHST--FQ--KEELEKERKVVFEEIKMVDDTPDDI 137 (421)
T ss_dssp HHHHTTTSCEEEEEC-SSCEEEEEEE-EGGGHHHHHHHHHHHHHSBC--CC--HHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHhCCceeeeec-cceEEEEEEe-cHHHHHHHHHHHHHHHhCCC--CC--HHHHHHHHHHHHHHHHHhhCCHHHH
Confidence 3444444443 233 3466667765 46899999999999876542 32 2456666666666655555555443
No 51
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=27.28 E-value=56 Score=33.11 Aligned_cols=54 Identities=15% Similarity=0.137 Sum_probs=43.6
Q ss_pred eeeEEEeecCCChHHHHHHHHHHHHHHHHhhhcc----chhhHHHHHHHHHHhhhhhh
Q psy13798 27 RFYTHIWFKSPLSTELYQTMRRVHDAVVSVAGSL----QSTQPEVQYLKERHLQLRQT 80 (614)
Q Consensus 27 ~~~~~~~~~~~~pqdL~~~m~klhetfValAg~l----q~~H~~V~~~KeqyL~~Rr~ 80 (614)
+=|-|-|-.+.++.+|..+-++++|+++-|-.-. -++-+.|+.+++.|+.|+..
T Consensus 19 ~~~fh~l~~~d~s~~~~~~~~q~~~~l~~~~~~~~~~~~~~~~~v~~l~~~y~~l~~~ 76 (267)
T 3htk_C 19 GKYFHNLHARDLSNIYQQCYKQIDETINQLVDSTSPSTIGIEEQVADITSTYKLLSTY 76 (267)
T ss_dssp HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCSSCSHHHHHHHHHHHHHHHHH
T ss_pred hhhhhcCchhhhHHHHHHHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHH
Confidence 4456888889999999999999999998776521 13688999999999988754
No 52
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=26.76 E-value=40 Score=29.70 Aligned_cols=25 Identities=12% Similarity=0.243 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHhhhccchhhHHHHH
Q psy13798 45 TMRRVHDAVVSVAGSLQSTQPEVQY 69 (614)
Q Consensus 45 ~m~klhetfValAg~lq~~H~~V~~ 69 (614)
.|+.|.+.+..|-.+|+.+++.++.
T Consensus 17 ~~~~l~~~~~~l~~~l~~~~~~l~~ 41 (182)
T 3kqg_A 17 KASALNTKIRALQGSLENMSKLLKR 41 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555444444443
No 53
>2d4x_A Flagellar HOOK-associated protein 3; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 1.90A {Salmonella typhimurium}
Probab=26.75 E-value=63 Score=30.65 Aligned_cols=52 Identities=10% Similarity=0.232 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHhh------hccchhhHHHHHHHHHHhhhhhhhhcCCCccccc
Q psy13798 40 TELYQTMRRVHDAVVSVA------GSLQSTQPEVQYLKERHLQLRQTYLKDSTNVFDV 91 (614)
Q Consensus 40 qdL~~~m~klhetfValA------g~lq~~H~~V~~~KeqyL~~Rr~~l~D~tdvFe~ 91 (614)
+++...|+||.|-.|..+ .....|.++|+.++|+.+++=..-=-+-..||..
T Consensus 43 ~~i~~~l~r~rel~vqa~ngt~s~~dr~~i~~e~~~l~~~i~~~an~~~~nG~~lf~G 100 (248)
T 2d4x_A 43 SQVTTAIQTAQEKIVYAGNGTLSDDDRASLATDLQGIRDQLMNLANSTDGNGRYIFAG 100 (248)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHHHHHHHHHTCBCTTSCBTTST
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHccCCCCCceeecC
Confidence 467788999999888755 3456677888888888766543211122345653
No 54
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=26.75 E-value=46 Score=29.29 Aligned_cols=35 Identities=3% Similarity=0.097 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHhhhccchhhHHHHHHHHHHhhhhh
Q psy13798 45 TMRRVHDAVVSVAGSLQSTQPEVQYLKERHLQLRQ 79 (614)
Q Consensus 45 ~m~klhetfValAg~lq~~H~~V~~~KeqyL~~Rr 79 (614)
+|+|-.|..-+|..+|+.++.+|+.+++.....++
T Consensus 10 ~l~~~~~~~~~l~~~~~~l~~~l~~~~~~l~~~~~ 44 (182)
T 3kqg_A 10 ELKSDLEKASALNTKIRALQGSLENMSKLLKRQND 44 (182)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555667788888999999988888776544333
No 55
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=26.45 E-value=48 Score=29.96 Aligned_cols=49 Identities=16% Similarity=0.236 Sum_probs=36.1
Q ss_pred CChHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHH---HH------hhhhhhhhcCC
Q psy13798 37 PLSTELYQTMRRVHDAVVSVAGSLQSTQPEVQYLKE---RH------LQLRQTYLKDS 85 (614)
Q Consensus 37 ~~pqdL~~~m~klhetfValAg~lq~~H~~V~~~Ke---qy------L~~Rr~~l~D~ 85 (614)
+..+||...-+.|.+.+-.|...|..+-+.|++.+. +| |.-||.++.+-
T Consensus 60 ~s~~E~~~~~~EL~~~l~sie~dLeDLe~sI~ivE~np~kF~l~~~Ei~~Rr~fV~~~ 117 (130)
T 4dnd_A 60 VGREELDWTTNELRNGLRSIEWDLEDLEETIGIVEANPGKFKLPAGDLQERKVFVERM 117 (130)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHhcCCCHHHHHHHHHHHHHH
Confidence 345688888888999999999999999988887662 22 66777777653
No 56
>1sqh_A Hypothetical protein CG14615-PA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Drosophila melanogaster} SCOP: d.108.1.5
Probab=26.23 E-value=9.6 Score=37.43 Aligned_cols=75 Identities=9% Similarity=0.021 Sum_probs=47.0
Q ss_pred HhhccccccceeeE---EEeecCC-ChHHHHHHHHHHHHHH-HHhhhccchhhHHHHHHHHHHhhhhhhh--hcCCCccc
Q psy13798 17 KLCGSVWTGSRFYT---HIWFKSP-LSTELYQTMRRVHDAV-VSVAGSLQSTQPEVQYLKERHLQLRQTY--LKDSTNVF 89 (614)
Q Consensus 17 ~~~~~~~~~~~~~~---~~~~~~~-~pqdL~~~m~klhetf-ValAg~lq~~H~~V~~~KeqyL~~Rr~~--l~D~tdvF 89 (614)
+--|.|-.-.|++. +||-+.| -.++|.+++.+ +|.+ .-.--.++.+|+.....=|++|..|.+- +.|+++|+
T Consensus 77 ~~~~t~v~~~~~~~~~~~i~~l~~~~~~~l~~~l~~-~~~i~w~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~y 155 (312)
T 1sqh_A 77 RTWGTYVSLHRDIVQSVSFFSWQPDGAAELWECLEQ-TQLIEWTQGALLTNVDLGFCNRVKELAVSRGVTAIQPRQCFGM 155 (312)
T ss_dssp HHHCCEEEEEESSSEEEEEECCCTTTTHHHHHHHHH-CSSSCTTTTCEEEEEEHHHHHHHHHHHHHTTCCCEEEEEEEEE
T ss_pred cccceEEEEEhheeeeeeeEeCCCCCHHHHHHHHhh-cCcccCCCCeEEEEccHHHHHHHHHHHHhcCCCccccCCceEE
Confidence 44466666678887 8888887 66788777721 1111 1222234467887777777777777662 46888887
Q ss_pred ccc
Q psy13798 90 DVE 92 (614)
Q Consensus 90 e~~ 92 (614)
.-.
T Consensus 156 ~l~ 158 (312)
T 1sqh_A 156 VLS 158 (312)
T ss_dssp EEC
T ss_pred Eec
Confidence 643
No 57
>1yc9_A VCEC, multidrug resistance protein; outer membrane protein, multidrug resistanc membrane protein; HET: BOG; 1.80A {Vibrio cholerae}
Probab=25.76 E-value=82 Score=30.90 Aligned_cols=51 Identities=14% Similarity=0.171 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHhhhhhhhhcCCCccccc
Q psy13798 41 ELYQTMRRVHDAVVSVAGSLQSTQPEVQYLKERHLQLRQTYLKDSTNVFDV 91 (614)
Q Consensus 41 dL~~~m~klhetfValAg~lq~~H~~V~~~KeqyL~~Rr~~l~D~tdvFe~ 91 (614)
+|..-+++.|..+...-.+|+...+.|+..||.|-..|+.|-.--.++.|.
T Consensus 351 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~y~~G~~s~~dl 401 (442)
T 1yc9_A 351 QALHEIADVVTSSQALQARINKTEQAVQQAEQALHIATNRYQGGLATYLDV 401 (442)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHH
Confidence 344555566666777777777788888888888888888876655555553
No 58
>2be3_A GTP pyrophosphokinase; structural genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG, transferase; HET: PG4; 2.40A {Streptococcus pneumoniae} SCOP: d.218.1.8
Probab=25.73 E-value=51 Score=31.91 Aligned_cols=45 Identities=7% Similarity=0.109 Sum_probs=35.1
Q ss_pred cCCChHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHhhhhh
Q psy13798 35 KSPLSTELYQTMRRVHDAVVSVAGSLQSTQPEVQYLKERHLQLRQ 79 (614)
Q Consensus 35 ~~~~pqdL~~~m~klhetfValAg~lq~~H~~V~~~KeqyL~~Rr 79 (614)
|...|.+|.+.|+++-+....+=.+|+.||++++.-+|-+=.+|+
T Consensus 165 ~~~~~~~~~~~l~~~a~~~~~~d~~m~~i~~~i~~~~~~~~~~~~ 209 (226)
T 2be3_A 165 QGDFPDEIKKRLEITARIAHQLDEEMGEIRDDIQEAQALFDPLSR 209 (226)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHCCC---
T ss_pred cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhH
Confidence 345688999999999999999999999999999987775544443
No 59
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.26 E-value=78 Score=28.16 Aligned_cols=37 Identities=16% Similarity=0.247 Sum_probs=27.7
Q ss_pred EEEeecCCChHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHH
Q psy13798 30 THIWFKSPLSTELYQTMRRVHDAVVSVAGSLQSTQPEVQYLKER 73 (614)
Q Consensus 30 ~~~~~~~~~pqdL~~~m~klhetfValAg~lq~~H~~V~~~Keq 73 (614)
-||..-.+.+..|..|++.|.+- |..+|++.+.+|+|
T Consensus 74 l~V~I~a~~~e~i~~A~~~Ie~L-------l~~v~~~~~~~~~q 110 (119)
T 2yqr_A 74 MYIYISHPKPEGLAAAKKLCENL-------LQTVHAEYSRFVNQ 110 (119)
T ss_dssp CEEEEEESSHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred cEEEEEeCCHHHHHHHHHHHHHH-------hhchHHHHHHHHHh
Confidence 48888889999998888887764 44567766666665
No 60
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=24.98 E-value=1.1e+02 Score=25.60 Aligned_cols=35 Identities=9% Similarity=0.078 Sum_probs=15.4
Q ss_pred HHHHHHHHHHhhhccchhhHHHHHHHHHHhhhhhh
Q psy13798 46 MRRVHDAVVSVAGSLQSTQPEVQYLKERHLQLRQT 80 (614)
Q Consensus 46 m~klhetfValAg~lq~~H~~V~~~KeqyL~~Rr~ 80 (614)
+.++.+-+-.|..+|..+-++++.++++.-.+|+.
T Consensus 66 i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~ 100 (112)
T 1l8d_A 66 LSKYHLDLNNSKNTLAKLIDRKSELERELRRIDME 100 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444433
No 61
>2bk9_A CG9734-PA; oxygen transport, drosophila melanogaster hemoglobin, heme hexacoordination, insect hemoglobin, protein cavities; HET: HEM CXS; 1.2A {Drosophila melanogaster} PDB: 2g3h_A*
Probab=24.89 E-value=28 Score=30.54 Aligned_cols=34 Identities=15% Similarity=0.077 Sum_probs=24.7
Q ss_pred HHHHHHhhhccchhhHHHHHHHHHHhhhhhhhhc
Q psy13798 50 HDAVVSVAGSLQSTQPEVQYLKERHLQLRQTYLK 83 (614)
Q Consensus 50 hetfValAg~lq~~H~~V~~~KeqyL~~Rr~~l~ 83 (614)
.|.+..+-.+|-..|.+.....|+|-.+++.+|.
T Consensus 82 ~~~l~~~l~~L~~~H~~~gV~p~~f~~~~~~Ll~ 115 (153)
T 2bk9_A 82 LEKLDEIWTKIAVSHIPRTVSKESYNQLKGVILD 115 (153)
T ss_dssp HHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 5566677777777788777778888877776653
No 62
>3qxl_A RAS-specific guanine nucleotide-releasing factor; CDC25 domain homology, guanine-nucleotide exchange factor, S GTPase RAL subfamily; 2.24A {Homo sapiens}
Probab=24.71 E-value=33 Score=33.80 Aligned_cols=10 Identities=10% Similarity=0.092 Sum_probs=6.0
Q ss_pred HHHhhhhhhh
Q psy13798 72 ERHLQLRQTY 81 (614)
Q Consensus 72 eqyL~~Rr~~ 81 (614)
+.|.+||+++
T Consensus 164 ~N~~~yR~~l 173 (271)
T 3qxl_A 164 DNYKRTREYI 173 (271)
T ss_dssp HHHHHHHHHH
T ss_pred hhHHHHHHHH
Confidence 3566676655
No 63
>3ljc_A ATP-dependent protease LA; LON N-domain, allosteric enzyme, ATP-binding, DNA-binding, H nucleotide-binding, serine protease, stress respo; 2.60A {Escherichia coli}
Probab=24.70 E-value=56 Score=31.22 Aligned_cols=21 Identities=24% Similarity=0.374 Sum_probs=10.3
Q ss_pred chhhHHHHHHHHHHhhhhhhhhc
Q psy13798 61 QSTQPEVQYLKERHLQLRQTYLK 83 (614)
Q Consensus 61 q~~H~~V~~~KeqyL~~Rr~~l~ 83 (614)
++|+++||.+-|+ +.|.||||
T Consensus 218 ~~I~~~v~~~~~k--~Qrey~Lr 238 (252)
T 3ljc_A 218 KRIRNRVKKQMEK--SQREYYLN 238 (252)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHH
T ss_pred HHHHHHHHHHHHH--HHHHHHHH
Confidence 4677777543222 34444443
No 64
>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*
Probab=24.43 E-value=82 Score=30.35 Aligned_cols=44 Identities=18% Similarity=0.203 Sum_probs=26.7
Q ss_pred hHHHHHHHHHHHHH---------HHHhhhccch---hhHHHHHHHHHHhhhhhhhh
Q psy13798 39 STELYQTMRRVHDA---------VVSVAGSLQS---TQPEVQYLKERHLQLRQTYL 82 (614)
Q Consensus 39 pqdL~~~m~klhet---------fValAg~lq~---~H~~V~~~KeqyL~~Rr~~l 82 (614)
|.||...|+++++. ..+++.-|.. .++.++.++++|...|+++.
T Consensus 249 ~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 304 (385)
T 1b5p_A 249 PKEVIKAMASVSRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLL 304 (385)
T ss_dssp CHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHH
Confidence 57888888887652 1222234433 34557777777777776553
No 65
>4acr_A Glypican-1; proteoglycan, glycosaminoglycans, heparan sulfate, helical B glycoprotein, membrane protein; HET: NAG; 2.55A {Homo sapiens} PDB: 4ad7_A*
Probab=24.33 E-value=44 Score=36.30 Aligned_cols=47 Identities=15% Similarity=0.187 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHhhhhhhhhcCCCccc
Q psy13798 41 ELYQTMRRVHDAVVSVAGSLQSTQPEVQYLKERHLQLRQTYLKDSTNVF 89 (614)
Q Consensus 41 dL~~~m~klhetfValAg~lq~~H~~V~~~KeqyL~~Rr~~l~D~tdvF 89 (614)
-|..+-++||+.|+-.-++|-.-|. +..++-|-.+|+||++.+.||=
T Consensus 113 Ll~~se~~l~~~F~~~Yg~ly~q~~--~~f~~LF~~L~~Yy~G~~v~Le 159 (478)
T 4acr_A 113 LLNDSERTLQATFPGAFGELYTQNA--RAFRDLYSELRLYYRGANLHLE 159 (478)
T ss_dssp HHHHHHHHHHHHCTTTSTHHHHHHH--HHHHHHHHHHHHHHTTSCCCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCCCCHH
Confidence 3455556666666666666655444 4467888999999999888763
No 66
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=24.25 E-value=52 Score=25.77 Aligned_cols=36 Identities=19% Similarity=0.171 Sum_probs=27.1
Q ss_pred ChHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHH
Q psy13798 38 LSTELYQTMRRVHDAVVSVAGSLQSTQPEVQYLKER 73 (614)
Q Consensus 38 ~pqdL~~~m~klhetfValAg~lq~~H~~V~~~Keq 73 (614)
-+.|...-|.+|-+.+-+|..+.+++.++|+.+||+
T Consensus 21 ~~~EVD~FLd~v~~~~~~l~~e~~~L~~~~~~l~~~ 56 (57)
T 2wuj_A 21 DEDEVNEFLAQVRKDYEIVLRKKTELEAKVNELDER 56 (57)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 478888889999888888888888888888887775
No 67
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=23.76 E-value=98 Score=30.67 Aligned_cols=39 Identities=8% Similarity=0.023 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHhhhc----cchhhHHHHHHHHHHhhhhh
Q psy13798 41 ELYQTMRRVHDAVVSVAGS----LQSTQPEVQYLKERHLQLRQ 79 (614)
Q Consensus 41 dL~~~m~klhetfValAg~----lq~~H~~V~~~KeqyL~~Rr 79 (614)
||...++++.+.+..|+.+ |..+++.|+..|+.|-.+.+
T Consensus 237 ~l~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~ 279 (357)
T 3rrk_A 237 LAPEELVGIREEVARLSRESGEALIALWTRAKDEVARYKAVAD 279 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444455555555555 66666666666666666544
No 68
>3ajm_A Programmed cell death protein 10; adaptor protein, dimerization, four-helix bundle, apoptosis; HET: 4IP; 2.30A {Homo sapiens} PDB: 3l8i_A 3rqe_A 3rqf_A 3rqg_A 3l8j_A
Probab=23.75 E-value=87 Score=31.01 Aligned_cols=46 Identities=17% Similarity=0.338 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHhhhccchhh-HHHHHHHHHHhhhhhh-------hhcCC
Q psy13798 40 TELYQTMRRVHDAVVSVAGSLQSTQ-PEVQYLKERHLQLRQT-------YLKDS 85 (614)
Q Consensus 40 qdL~~~m~klhetfValAg~lq~~H-~~V~~~KeqyL~~Rr~-------~l~D~ 85 (614)
-|+..+++||-+++-++...++..| +.||.+|..|..|-|+ |+||.
T Consensus 125 KeIAsaIKklLDAvn~v~~~~~~~~k~~le~~KreFVkySKrFS~TLKeYFkd~ 178 (213)
T 3ajm_A 125 KDIASAIKELLDTVNNVFKKYQYQNRRALEHQKKEFVKYSKSFSDTLKTYFKDG 178 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhHhhHHHHHHHhcC
Confidence 4677889999999999998888775 5689999999998764 66664
No 69
>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}
Probab=23.45 E-value=1.1e+02 Score=28.95 Aligned_cols=44 Identities=11% Similarity=0.235 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHHHH---------HHHhhhccch-hhHHHHHHHHHHhhhhhhhh
Q psy13798 39 STELYQTMRRVHDA---------VVSVAGSLQS-TQPEVQYLKERHLQLRQTYL 82 (614)
Q Consensus 39 pqdL~~~m~klhet---------fValAg~lq~-~H~~V~~~KeqyL~~Rr~~l 82 (614)
+.||...|+++... ..+++.-|+. ..+.++.++++|...|+++.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 290 (370)
T 2z61_A 237 NDEIIEAILKLQQNLFISAPTISQYAALKAFEKETEREINSMIKEFDRRRRLVL 290 (370)
T ss_dssp CHHHHHHHHHHHHHHTSSSCHHHHHHHGGGGSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHH
Confidence 46888888776653 2344455554 34456777777777776653
No 70
>3fav_A ESAT-6-like protein ESXB; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_A
Probab=23.33 E-value=48 Score=27.06 Aligned_cols=31 Identities=10% Similarity=0.111 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHhhhccchhhHHHHHHHHHH
Q psy13798 44 QTMRRVHDAVVSVAGSLQSTQPEVQYLKERH 74 (614)
Q Consensus 44 ~~m~klhetfValAg~lq~~H~~V~~~Keqy 74 (614)
..++|+++.+.-|...|++|.+.|+.-.+.|
T Consensus 54 ~~~~~w~~~~~~l~~~L~~i~~~l~~~a~~y 84 (101)
T 3fav_A 54 AAVVRFQEAANKQKQELDEISTNIRQAGVQY 84 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555554444
No 71
>1ek9_A Outer membrane protein TOLC; integral membrane protein, alpha helical barrel, beta barrel; 2.10A {Escherichia coli} SCOP: f.5.1.1 PDB: 1tqq_A 2vde_A 2vdd_A 2wmz_A* 2xmn_A*
Probab=23.27 E-value=99 Score=29.93 Aligned_cols=51 Identities=14% Similarity=0.195 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHhhhhhhhhcCCCcccc
Q psy13798 40 TELYQTMRRVHDAVVSVAGSLQSTQPEVQYLKERHLQLRQTYLKDSTNVFD 90 (614)
Q Consensus 40 qdL~~~m~klhetfValAg~lq~~H~~V~~~KeqyL~~Rr~~l~D~tdvFe 90 (614)
++|..-+++.|..+..+-.+|+...+.|+..+|.|-..|+.|-.--.++.|
T Consensus 321 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~y~~G~~~~~d 371 (428)
T 1ek9_A 321 RSVVQTVRSSFNNINASISSINAYKQAVVSAQSSLDAMEAGYSVGTRTIVD 371 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHH
Confidence 345555566666677777777777888888888887777777555454444
No 72
>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus}
Probab=23.26 E-value=90 Score=29.71 Aligned_cols=44 Identities=14% Similarity=0.067 Sum_probs=27.9
Q ss_pred hHHHHHHHHHHHHHH---------HHhhhccchhhHHHHHHHHHHhhhhhhhh
Q psy13798 39 STELYQTMRRVHDAV---------VSVAGSLQSTQPEVQYLKERHLQLRQTYL 82 (614)
Q Consensus 39 pqdL~~~m~klhetf---------ValAg~lq~~H~~V~~~KeqyL~~Rr~~l 82 (614)
+.||...|+++.... .+++.-|+...+.++.++++|...|+++.
T Consensus 245 ~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~ 297 (376)
T 2dou_A 245 SEEALARLERVKGVIDFNQYAGVLRMGVEALKTPKEVVRGYARVYRERALGMA 297 (376)
T ss_dssp CHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHH
Confidence 578877777765432 34444565545567777777777776653
No 73
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=23.13 E-value=1e+02 Score=29.47 Aligned_cols=44 Identities=16% Similarity=0.335 Sum_probs=36.8
Q ss_pred ChHHHHHHHHHHHHHHHHhhhccchh--hHHHHHHHHHHhhhhhhh
Q psy13798 38 LSTELYQTMRRVHDAVVSVAGSLQST--QPEVQYLKERHLQLRQTY 81 (614)
Q Consensus 38 ~pqdL~~~m~klhetfValAg~lq~~--H~~V~~~KeqyL~~Rr~~ 81 (614)
|-+-|..+|.+..|-=-+|+-+.+.. ...|....++|+..|+.|
T Consensus 129 L~~~L~~a~~e~eeeS~~l~~~F~~~~~e~dv~~Fl~~y~~~R~~y 174 (192)
T 2p22_C 129 LKKKLEQNTKKLDEESSQLETTTRSIDSADDLDQFIKNYLDIRTQY 174 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHHH
Confidence 34567778888888888888888876 789999999999999977
No 74
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=23.02 E-value=25 Score=36.24 Aligned_cols=39 Identities=15% Similarity=0.166 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhhhccchhhHHHHHHHHHHhhhhhhhhcC
Q psy13798 46 MRRVHDAVVSVAGSLQSTQPEVQYLKERHLQLRQTYLKD 84 (614)
Q Consensus 46 m~klhetfValAg~lq~~H~~V~~~KeqyL~~Rr~~l~D 84 (614)
+.++-+.+..|..+|+++.++|+.||++...|++...+.
T Consensus 13 Il~~~~~i~~L~~~l~~~~~ki~~L~~~i~~l~~~~~~~ 51 (319)
T 1fzc_C 13 ILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQCQEP 51 (319)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSC
T ss_pred hhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 334455666666777777888888888888887766553
No 75
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=22.91 E-value=78 Score=24.95 Aligned_cols=40 Identities=18% Similarity=0.184 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHhhhccchhhHHHHHHHHHHhhhhhhhhcCC
Q psy13798 45 TMRRVHDAVVSVAGSLQSTQPEVQYLKERHLQLRQTYLKDS 85 (614)
Q Consensus 45 ~m~klhetfValAg~lq~~H~~V~~~KeqyL~~Rr~~l~D~ 85 (614)
-+.||-|...-||.|++++ +..-..|||=..-=+.+|||.
T Consensus 5 ~l~kLKe~n~~L~~kv~~L-e~~c~~~eQEieRL~~LLkqH 44 (48)
T 3vmx_A 5 QILRLKQINIQLATKIQHL-EFSCSEKEQEIERLNKLLKQN 44 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHccHHHHHHHHHHHHHHHc
Confidence 3556666666777777766 333344555543334566664
No 76
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=22.57 E-value=98 Score=23.63 Aligned_cols=38 Identities=13% Similarity=0.107 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHhhhccchhhHHHHHHHHHHhhhhhh
Q psy13798 43 YQTMRRVHDAVVSVAGSLQSTQPEVQYLKERHLQLRQT 80 (614)
Q Consensus 43 ~~~m~klhetfValAg~lq~~H~~V~~~KeqyL~~Rr~ 80 (614)
....++|++.+.-+..++..+-.+++.+|.+|-+.++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ 41 (60)
T 3htk_A 4 ANTKKTLENQVEELTEKCSLKTDEFLKAKEKINEIFEK 41 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777777777777777777776665543
No 77
>1g4w_R Protein tyrosine phosphatase SPTP; virulence factor, GTPase activating protein, 4-helix bundle, disorder, signaling protein; 2.20A {Salmonella typhimurium} SCOP: a.24.11.1 c.45.1.2 PDB: 1g4u_S
Probab=22.42 E-value=97 Score=31.89 Aligned_cols=38 Identities=16% Similarity=0.357 Sum_probs=26.1
Q ss_pred EEeecCCChHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHhhhhh
Q psy13798 31 HIWFKSPLSTELYQTMRRVHDAVVSVAGSLQSTQPEVQYLKERHLQLRQ 79 (614)
Q Consensus 31 ~~~~~~~~pqdL~~~m~klhetfValAg~lq~~H~~V~~~KeqyL~~Rr 79 (614)
.-|+++..|.||...+++||+- .++++.+++.|.+.++
T Consensus 95 ~~~~~~~~~~~l~~~~~~l~~~-----------~~e~~~l~~~~~~~~~ 132 (383)
T 1g4w_R 95 ERWVDKASTHELTQAVKKIHVI-----------AKELKNVTAELEKIEA 132 (383)
T ss_dssp HHHHC-CCHHHHHHHHHHHHHH-----------HHHHHHHHHHHHTC--
T ss_pred HHHHHhCCHHHHHHHHHHHHHH-----------HhhHHHHHHHHHhccc
Confidence 4588999999999998888862 2566667766665544
No 78
>1lxn_A Hypothetical protein MTH1187; hypothetical structure, structural genomics, PSI, protein ST initiative; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: d.58.48.1
Probab=22.17 E-value=87 Score=26.84 Aligned_cols=34 Identities=24% Similarity=0.444 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHHHHHHHh-hhcc-------------chhhHHHHHHHH
Q psy13798 39 STELYQTMRRVHDAVVSV-AGSL-------------QSTQPEVQYLKE 72 (614)
Q Consensus 39 pqdL~~~m~klhetfVal-Ag~l-------------q~~H~~V~~~Ke 72 (614)
-.||..+++++||..... +.|+ +.+.+||+..+|
T Consensus 50 ~devm~vv~~~~e~~~~~G~~Rv~~~iKid~R~d~~~~~~~Kv~~v~~ 97 (99)
T 1lxn_A 50 LDELMEAVKAAHEAVLQAGSDRVYTTLKIDDRRDADRGLRDKVESVKE 97 (99)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEEEEEEEEEESSSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCeEEEEEEEEecCCCCCCHHHHHHHHHh
Confidence 589999999999998887 6665 455666666554
No 79
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ...
Probab=22.15 E-value=88 Score=30.33 Aligned_cols=55 Identities=13% Similarity=0.053 Sum_probs=33.5
Q ss_pred eeeEEEeecCCChHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHhhhhhhhhcCCC
Q psy13798 27 RFYTHIWFKSPLSTELYQTMRRVHDAVVSVAGSLQSTQPEVQYLKERHLQLRQTYLKDST 86 (614)
Q Consensus 27 ~~~~~~~~~~~~pqdL~~~m~klhetfValAg~lq~~H~~V~~~KeqyL~~Rr~~l~D~t 86 (614)
+-++.+.++. ++.+|..+|+.|+|.+.... + -.+.|+..|++.++-+|.+..||.
T Consensus 102 ~~~t~~~~~~-~~~~l~~~l~ll~~~~~~p~--f--~~~~~~~~k~~v~~e~~~~~~~p~ 156 (439)
T 1pp9_B 102 RENMAYTVEC-LRDDVDILMEFLLNVTTAPE--F--RRWEVAALQPQLRIDKAVALQNPQ 156 (439)
T ss_dssp SSCEEEEEEE-EGGGHHHHHHHHHHHHHCBC--C--CHHHHHHHHHHHHHHHHHHTTSHH
T ss_pred ceEEEEEEEe-ehhhHHHHHHHHHHHHhCCC--C--CHHHHHHHHHHHHHHHHHHHcCHH
Confidence 4455566655 46889999999999876432 2 123455566666555555544543
No 80
>3tl1_A WHIE ORF VI, polyketide cyclase; helix-GRIP fold, polyketide C9-C14 aromatase/cyclase, linear beta-ketone intermediate; HET: JRO; 1.80A {Streptomyces coelicolor} PDB: 3tvr_A 2kf2_A
Probab=22.14 E-value=68 Score=28.78 Aligned_cols=66 Identities=8% Similarity=0.108 Sum_probs=41.2
Q ss_pred CCcccccchhHHHHhhccccccceeeEEEeecCCChHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHH
Q psy13798 4 NSPIRFHHDKWLWKLCGSVWTGSRFYTHIWFKSPLSTELYQTMRRVHDAVVSVAGSLQSTQPEVQYLKER 73 (614)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pqdL~~~m~klhetfValAg~lq~~H~~V~~~Keq 73 (614)
..|++..+-.|..+-.+.- +--+|+.+.-|+...|.++....++|.+-+.+. |..|-++||...+.
T Consensus 85 ~gPf~~l~g~W~f~p~~~g-t~V~~~~df~~~~~~p~~~~~~~~~~~~~~~~~---L~~lK~~~E~~~~~ 150 (159)
T 3tl1_A 85 TGPFQYMNIVWEYAETAEG-TVMRWTQDFAMKPDAPVDDAWMTDNINRNSRTQ---MALIRDRIEQAAGE 150 (159)
T ss_dssp CTTEEEEEEEEEEEEETTE-EEEEEEEEEEECTTCSSCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred CCChhhccCEEEEEECCCC-EEEEEEEEEEecCCCCCCHHHHHHHHHhhHHHH---HHHHHHHHhhhhhh
Confidence 4477777767766654442 334566667788778888777667777765554 55555556554433
No 81
>3v47_C Flagellin; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Salmonella enterica subsp}
Probab=22.01 E-value=82 Score=33.72 Aligned_cols=40 Identities=25% Similarity=0.331 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHhhh------ccchhhHHHHHHHHHHhhhhh
Q psy13798 40 TELYQTMRRVHDAVVSVAG------SLQSTQPEVQYLKERHLQLRQ 79 (614)
Q Consensus 40 qdL~~~m~klhetfValAg------~lq~~H~~V~~~KeqyL~~Rr 79 (614)
+|+...|+||.|-.|.-+- ..+.|.++|++|+||-+++-.
T Consensus 42 ~~i~~iLqRmRELaVQAaNgT~s~~DR~aIq~Ei~qL~~eI~~Ian 87 (425)
T 3v47_C 42 NEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLEEIDRVSN 87 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5778889999997776552 467889999999999888765
No 82
>3h6p_C ESAT-6-like protein ESXR; four-helix bundle, structural genomics, PSI-2, protein struc initiative, TB structural genomics consortium; 1.91A {Mycobacterium tuberculosis} PDB: 2kg7_B 3q4h_B
Probab=21.93 E-value=58 Score=26.41 Aligned_cols=30 Identities=20% Similarity=0.207 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHhhhccchhhHHHHH
Q psy13798 40 TELYQTMRRVHDAVVSVAGSLQSTQPEVQY 69 (614)
Q Consensus 40 qdL~~~m~klhetfValAg~lq~~H~~V~~ 69 (614)
+++...+++|+|.+..|+..|+..|+..+.
T Consensus 56 ~~W~~~~~~l~~~L~~i~~~l~~a~~~y~~ 85 (96)
T 3h6p_C 56 TQWNQALEDLVRAYQSMSGTHESNTMAMLA 85 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHCC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666666666666666655443
No 83
>3pik_A Cation efflux system protein CUSC; beta-barrel, lipoprotein, outer membrane; HET: UNL; 2.30A {Escherichia coli}
Probab=21.83 E-value=1.2e+02 Score=29.80 Aligned_cols=49 Identities=10% Similarity=0.146 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHhhhhhhhhcCCCcccc
Q psy13798 42 LYQTMRRVHDAVVSVAGSLQSTQPEVQYLKERHLQLRQTYLKDSTNVFD 90 (614)
Q Consensus 42 L~~~m~klhetfValAg~lq~~H~~V~~~KeqyL~~Rr~~l~D~tdvFe 90 (614)
|.+-+++.+..+..+-.+|+...+.|+..+|.|-..|+.|-.--.++.|
T Consensus 356 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~y~~G~~s~~d 404 (446)
T 3pik_A 356 AFKEVADALALRQSLNDQISAQQRYLASLQITLQRARALYQHGAVSYLE 404 (446)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccHHH
Confidence 3334444455555566666666677777777777777777554444444
No 84
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=21.78 E-value=79 Score=27.44 Aligned_cols=22 Identities=9% Similarity=0.033 Sum_probs=9.5
Q ss_pred hhccchhhHHHHHHHHHHhhhh
Q psy13798 57 AGSLQSTQPEVQYLKERHLQLR 78 (614)
Q Consensus 57 Ag~lq~~H~~V~~~KeqyL~~R 78 (614)
..++++++++|+.++|+-.+.|
T Consensus 117 ~~~~~~l~~~l~~le~~~~~~r 138 (139)
T 3eff_K 117 TRTTRALHERFDRLERMLDDNR 138 (139)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHhhc
Confidence 3333444444444444444433
No 85
>3pwx_A Putative flagellar HOOK-associated protein; structural genomics, structural protein, PSI-2, protein STRU initiative; 2.50A {Vibrio parahaemolyticus}
Probab=21.76 E-value=94 Score=29.98 Aligned_cols=40 Identities=10% Similarity=0.102 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHhh------hccchhhHHHHHHHHHHhhhhh
Q psy13798 40 TELYQTMRRVHDAVVSVA------GSLQSTQPEVQYLKERHLQLRQ 79 (614)
Q Consensus 40 qdL~~~m~klhetfValA------g~lq~~H~~V~~~KeqyL~~Rr 79 (614)
+++...|+||.|..|..+ ...+.|-++|+.+||+.+++=.
T Consensus 45 ~~i~~~l~r~rel~vqa~ngt~s~~dr~ai~~E~~~l~~~i~~iaN 90 (239)
T 3pwx_A 45 DSVSESLKSMRDIVLWGANGSLTDQDRSGMITELKSYRDSIESSFN 90 (239)
T ss_dssp HHHHHHHHHHHHHHHHHSCSSCCTTTHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHc
Confidence 467788999999888654 2457788888888888876543
No 86
>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1
Probab=21.75 E-value=97 Score=29.56 Aligned_cols=43 Identities=12% Similarity=0.162 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHHHH-------HH--HhhhccchhhHHHHHHHHHHhhhhhhh
Q psy13798 39 STELYQTMRRVHDA-------VV--SVAGSLQSTQPEVQYLKERHLQLRQTY 81 (614)
Q Consensus 39 pqdL~~~m~klhet-------fV--alAg~lq~~H~~V~~~KeqyL~~Rr~~ 81 (614)
+.||...|+++++. +. ++..-|+...+.++.++|+|...|+++
T Consensus 252 ~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l 303 (388)
T 1j32_A 252 PVPLVKAATKIQGHSTSNVCTFAQYGAIAAYENSQDCVQEMLAAFAERRRYM 303 (388)
T ss_dssp CHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 57788888877652 21 222344444455777777777777665
No 87
>3i94_A Phycocyanobilin:ferredoxin oxidoreductase; alpha-beta-alpha sandwich, enzyme-substrate analog complex; HET: BL3; 1.04A {Synechocystis SP} PDB: 2dke_A 2d1e_A* 3i8u_X* 3i95_A* 3f0l_A* 3f0m_A* 4eod_A* 4eoe_A* 3f0j_A* 3f0k_A* 3nb8_A* 3nb9_A* 3ajg_A* 3ajh_A* 4eoc_A*
Probab=21.75 E-value=1.2e+02 Score=30.15 Aligned_cols=52 Identities=12% Similarity=0.049 Sum_probs=27.2
Q ss_pred EeecCCChHH-HHH---HHHHHHHHHHHhhhccchhhH----HHHHHHHHHhhhhhhhhcCCC
Q psy13798 32 IWFKSPLSTE-LYQ---TMRRVHDAVVSVAGSLQSTQP----EVQYLKERHLQLRQTYLKDST 86 (614)
Q Consensus 32 ~~~~~~~pqd-L~~---~m~klhetfValAg~lq~~H~----~V~~~KeqyL~~Rr~~l~D~t 86 (614)
||.+ |..+| -.+ .++..++..+.++.+.+.+.+ +|.+.+..|+.||+. |||+
T Consensus 163 lf~R-p~~~ee~~~f~~~~~~Yl~~~~~~~~~a~p~~~~~~~~~~~~Q~~Y~~~qae--nDpa 222 (248)
T 3i94_A 163 LFIR-PSNVTEEERFVQRVVDFLQIHCHQSIVAEPLSEAQTLEHRQGQIHYCQQQQK--NDKT 222 (248)
T ss_dssp EEEC-CCSHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHTT--CHHH
T ss_pred EEec-CCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHHH--hCcH
Confidence 7878 54444 332 333444444545544433322 455666678877764 5554
No 88
>3mhs_C SAGA-associated factor 11; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3m99_B 3mhh_C 4fjc_C 4fk5_C 4fip_C 2lo2_A 3kjl_E 3kik_E
Probab=21.61 E-value=69 Score=28.42 Aligned_cols=31 Identities=26% Similarity=0.400 Sum_probs=25.7
Q ss_pred hhHHHHHHHHHHhhhhhhhhcC--CCccccccc
Q psy13798 63 TQPEVQYLKERHLQLRQTYLKD--STNVFDVER 93 (614)
Q Consensus 63 ~H~~V~~~KeqyL~~Rr~~l~D--~tdvFe~~~ 93 (614)
++.+.|.++.+|=+++.|+..| ..|||...+
T Consensus 31 e~~~~k~l~~r~p~~k~y~~~~~~~lDIfG~~~ 63 (99)
T 3mhs_C 31 ETTQQQLLKTRYPDLRSYYFDPNGSLDINGLQK 63 (99)
T ss_dssp HHHHHHHHHHHCTTCCCCCCCTTSCSCTTSCCC
T ss_pred HHHHHHHHhccCCCCCCceecCCCCcccCCCcC
Confidence 5778888999999999999988 679998543
No 89
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=21.58 E-value=1.4e+02 Score=24.90 Aligned_cols=49 Identities=16% Similarity=0.179 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHhhhhhhhhcCCCcccc
Q psy13798 40 TELYQTMRRVHDAVVSVAGSLQSTQPEVQYLKERHLQLRQTYLKDSTNVFD 90 (614)
Q Consensus 40 qdL~~~m~klhetfValAg~lq~~H~~V~~~KeqyL~~Rr~~l~D~tdvFe 90 (614)
|++-.-+++||+.+-.|..+++.+...++.++.---.|. .|.|.++||.
T Consensus 9 Q~~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~--~l~~d~~vy~ 57 (117)
T 2zqm_A 9 QAMLGQLESYQQQLQLVVQQKQKVQLELTEAKKALDEIE--SLPDDAVVYK 57 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TSCTTCCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCCCcHhHH
Confidence 344445555555555554444444333333332222221 3566677775
No 90
>3d5k_A OPRM, outer membrane protein OPRM; channel, beta-alpha-barrel, antibiotic RES lipoprotein, palmitate, transmemb transport; 2.40A {Pseudomonas aeruginosa} PDB: 1wp1_A
Probab=21.54 E-value=1.1e+02 Score=30.64 Aligned_cols=52 Identities=15% Similarity=0.096 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHhhhhhhhhcCCCccccc
Q psy13798 40 TELYQTMRRVHDAVVSVAGSLQSTQPEVQYLKERHLQLRQTYLKDSTNVFDV 91 (614)
Q Consensus 40 qdL~~~m~klhetfValAg~lq~~H~~V~~~KeqyL~~Rr~~l~D~tdvFe~ 91 (614)
++|..-+++.|..+...-.+|+...+.|+..||.|-..|+.|-.--.++.|.
T Consensus 363 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~y~~G~~~~~dv 414 (474)
T 3d5k_A 363 QTAFQEVADGLAARGTFTEQLQAQRDLVKASDEYYQLADKRYRTGVDNYLTL 414 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHH
Confidence 3455556666777777777888888888888888888888876655555553
No 91
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=21.50 E-value=1.2e+02 Score=25.53 Aligned_cols=41 Identities=12% Similarity=0.145 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHHH-------HHHHhhhccchhhHHHHHHHHHHhhhhh
Q psy13798 39 STELYQTMRRVHD-------AVVSVAGSLQSTQPEVQYLKERHLQLRQ 79 (614)
Q Consensus 39 pqdL~~~m~klhe-------tfValAg~lq~~H~~V~~~KeqyL~~Rr 79 (614)
=+||..++++--| ..-.|=.+|++-.+.|+.+|.++=.||-
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4788888865555 4445566666666777777776666655
No 92
>1rtm_1 Mannose-binding protein-A; lectin; 1.80A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1 PDB: 1kwu_A* 1kwv_A* 1kwt_A* 1kwx_A* 1kwy_A* 1kx1_A* 1kww_A 1kwz_A* 1kx0_A* 3kmb_1* 1kmb_1* 2kmb_1* 4kmb_1* 1afb_1* 1afa_1* 1afd_1 1bch_1* 1bcj_1* 1fif_A 1fih_A*
Probab=21.42 E-value=42 Score=28.74 Aligned_cols=23 Identities=17% Similarity=0.186 Sum_probs=10.3
Q ss_pred hhccchhhHHHHHHHHHHhhhhh
Q psy13798 57 AGSLQSTQPEVQYLKERHLQLRQ 79 (614)
Q Consensus 57 Ag~lq~~H~~V~~~KeqyL~~Rr 79 (614)
-.||+.++.+|+.+++....|++
T Consensus 3 ~~~l~~l~~~~~~l~~~l~~l~~ 25 (149)
T 1rtm_1 3 EVKLANMEAEINTLKSKLELTNK 25 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444444444444444444444
No 93
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C
Probab=21.38 E-value=50 Score=32.58 Aligned_cols=69 Identities=16% Similarity=0.123 Sum_probs=38.0
Q ss_pred hhHHHHhhccc--cccceeeEEEeecCCChHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHhhhhh-hhhcCCC
Q psy13798 12 DKWLWKLCGSV--WTGSRFYTHIWFKSPLSTELYQTMRRVHDAVVSVAGSLQSTQPEVQYLKERHLQLRQ-TYLKDST 86 (614)
Q Consensus 12 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~pqdL~~~m~klhetfValAg~lq~~H~~V~~~KeqyL~~Rr-~~l~D~t 86 (614)
+++|=++.+++ +| ++-+|.++++. ++.+|..+|+.|.|.+.... + --+.|+..|++.++-+| .+..||.
T Consensus 70 ~~~l~~~g~~~na~t-~~d~t~y~~~~-~~~~l~~~l~ll~d~~~~p~--f--~~~~~~~e~~~v~~e~~~~~~~~p~ 141 (445)
T 3ami_A 70 SKRVAAMGGRDNAFT-TRDYTAYYQQV-PSSRLSDVMGLEADRMANLV--V--DDELFKKEIQVIAEERRWRTDDKPR 141 (445)
T ss_dssp HHHHHHTTCEEEEEE-CSSCEEEEEEE-EGGGHHHHHHHHHHHHHCBC--C--CHHHHHHHHHHHHHHHHHTGGGCHH
T ss_pred HHHHHHhCCcccccc-CCCeEEEEEEC-CHHHHHHHHHHHHHHhcCCC--C--CHHHHHHHHHHHHHHHHhcccCChH
Confidence 34455544432 22 23345555554 56899999999999886543 2 12344555555555444 3444443
No 94
>1f45_B Interleukin-12 alpha chain; cytokine, cytokine-cytokine complex; HET: NAG MAN; 2.80A {Homo sapiens} SCOP: a.26.1.1 PDB: 3hmx_B*
Probab=21.36 E-value=50 Score=32.36 Aligned_cols=32 Identities=16% Similarity=0.257 Sum_probs=26.6
Q ss_pred ccchhhHHHHHHHHHHhhhhhhhhcCCCc-ccc
Q psy13798 59 SLQSTQPEVQYLKERHLQLRQTYLKDSTN-VFD 90 (614)
Q Consensus 59 ~lq~~H~~V~~~KeqyL~~Rr~~l~D~td-vFe 90 (614)
-|++|.|.+|.+|+.+..|-+.+|.||-. |+.
T Consensus 101 CL~sIyEDLk~Y~~ef~A~~~~l~~dp~~Qi~L 133 (197)
T 1f45_B 101 CLSSIYEDLKMYQVEFKTMNAKLLMDPKRQIFL 133 (197)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSTTCCCSH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhcCChhhhhhc
Confidence 46788888999999999999999999974 444
No 95
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.31 E-value=74 Score=25.24 Aligned_cols=35 Identities=9% Similarity=0.004 Sum_probs=24.1
Q ss_pred HHHHHhhhccchhhHHHHHHHHHHhhhhhhhhcCCCc
Q psy13798 51 DAVVSVAGSLQSTQPEVQYLKERHLQLRQTYLKDSTN 87 (614)
Q Consensus 51 etfValAg~lq~~H~~V~~~KeqyL~~Rr~~l~D~td 87 (614)
.-...+|..|.. ...++.||+|.+|-+..+|.-..
T Consensus 34 ~~W~~IA~~~~~--Rt~~qcr~r~~~~l~~~~k~g~~ 68 (75)
T 2yum_A 34 RRWQKIADELGN--RTAKQVASQVQKYFIKLTKAGIP 68 (75)
T ss_dssp HHHHHHHHHHSS--SCHHHHHHHHHHHHGGGSTTCSC
T ss_pred ccHHHHHHHhCC--CCHHHHHHHHHHHHHHHHhcCCC
Confidence 345666766653 56778899998887776665443
No 96
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=21.30 E-value=65 Score=33.21 Aligned_cols=13 Identities=31% Similarity=0.473 Sum_probs=7.5
Q ss_pred hhhhccccccccc
Q psy13798 184 LVLSRQLPLRLDF 196 (614)
Q Consensus 184 ~~~~~~~~~~~~~ 196 (614)
|.-.+..-||+|.
T Consensus 158 LT~~~~~eLrI~L 170 (323)
T 1lwu_C 158 LTGQQAYRLRIDL 170 (323)
T ss_dssp HHTTSCEEEEEEE
T ss_pred cccCCCeEEEEEE
Confidence 3345666677763
No 97
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=21.23 E-value=1.1e+02 Score=24.10 Aligned_cols=39 Identities=10% Similarity=0.040 Sum_probs=30.2
Q ss_pred hHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHhhh
Q psy13798 39 STELYQTMRRVHDAVVSVAGSLQSTQPEVQYLKERHLQL 77 (614)
Q Consensus 39 pqdL~~~m~klhetfValAg~lq~~H~~V~~~KeqyL~~ 77 (614)
.+.....++++++.+.-|...|++|.+.|+...+.|-.-
T Consensus 51 ~~af~~~~~~~~~~~~~~~~~L~~i~~~L~~~a~~~~~~ 89 (99)
T 3zbh_A 51 SEAFIQQYQELRPSFEKMAVLLNEVGQQLHNSATILEDT 89 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667788888888888888888888888888877543
No 98
>2kel_A SVTR protein, uncharacterized protein 56B; homodimer, ribbon-helix-helix, transcription repres; NMR {Sulfolobus islandicus rod-shaped virus}
Probab=21.14 E-value=80 Score=24.68 Aligned_cols=31 Identities=10% Similarity=0.037 Sum_probs=23.5
Q ss_pred HHHHHHHhhhc-cchhhHHHHHHHHHHhhhhh
Q psy13798 49 VHDAVVSVAGS-LQSTQPEVQYLKERHLQLRQ 79 (614)
Q Consensus 49 lhetfValAg~-lq~~H~~V~~~KeqyL~~Rr 79 (614)
||+.+..+|.+ =.++|+-|+..-++||..|.
T Consensus 24 LH~rlk~~Aa~~g~Sln~~i~eAL~~yl~~~e 55 (56)
T 2kel_A 24 LKTRLKVYCAKNNLQLTQAIEEAIKEYLQKRN 55 (56)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc
Confidence 56666666543 46899999999999997763
No 99
>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae}
Probab=21.02 E-value=76 Score=31.62 Aligned_cols=44 Identities=11% Similarity=0.214 Sum_probs=28.3
Q ss_pred hHHHHHHHHHHHHHH---------HHhhhccchh--hHHHHHHHHHHhhhhhhhh
Q psy13798 39 STELYQTMRRVHDAV---------VSVAGSLQST--QPEVQYLKERHLQLRQTYL 82 (614)
Q Consensus 39 pqdL~~~m~klhetf---------ValAg~lq~~--H~~V~~~KeqyL~~Rr~~l 82 (614)
+.||...|+++++.. .|++.-|... .+.++.++++|...|+++.
T Consensus 290 ~~~l~~~l~~~~~~~~~~~~~~~~~a~~~aL~~~~~~~~~~~~~~~~~~~~~~l~ 344 (447)
T 3b46_A 290 NAELLSYAAKAHTRICFASPSPLQEACANSINDALKIGYFEKMRQEYINKFKIFT 344 (447)
T ss_dssp CHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhccCCCChHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHH
Confidence 678888888876532 2444556554 3446777777777776653
No 100
>3l9d_A SMU.1046C, putative GTP pyrophosphokinase; transferase; 2.48A {Streptococcus mutans}
Probab=20.96 E-value=64 Score=32.17 Aligned_cols=36 Identities=0% Similarity=0.163 Sum_probs=31.1
Q ss_pred cCCChHHHHHHHHHHHHHHHHhhhccchhhHHHHHH
Q psy13798 35 KSPLSTELYQTMRRVHDAVVSVAGSLQSTQPEVQYL 70 (614)
Q Consensus 35 ~~~~pqdL~~~m~klhetfValAg~lq~~H~~V~~~ 70 (614)
+...|.||.+-|+++-+.+..|=-+++.|+++|+..
T Consensus 194 ~~~~p~~i~r~L~~~A~~l~~~D~~m~~Ir~~i~~~ 229 (255)
T 3l9d_A 194 HGEFPEDIKRRLELTSKIAFQLDEEMRQIRDDIKEA 229 (255)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345789999999999999999999999999998764
No 101
>3r8s_Y 50S ribosomal protein L29; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_W 1p86_W 1vs8_X 1vs6_X 2aw4_X 2awb_X 1vt2_Y 2i2v_Y 2j28_X 2i2t_Y* 2qao_X* 2qba_X* 2qbc_X* 2qbe_X 2qbg_X 2qbi_X* 2qbk_X* 2qov_X 2qox_X 2qoz_X* ...
Probab=20.91 E-value=38 Score=27.16 Aligned_cols=22 Identities=18% Similarity=0.270 Sum_probs=18.1
Q ss_pred cchhhHHHHHHHHHHhhhhhhh
Q psy13798 60 LQSTQPEVQYLKERHLQLRQTY 81 (614)
Q Consensus 60 lq~~H~~V~~~KeqyL~~Rr~~ 81 (614)
..+++++++.+|+.|++||=..
T Consensus 11 ~~EL~~~l~elk~Elf~LR~q~ 32 (63)
T 3r8s_Y 11 VEELNTELLNLLREQFNLRMQA 32 (63)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3578899999999999999543
No 102
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B*
Probab=20.51 E-value=89 Score=30.50 Aligned_cols=68 Identities=15% Similarity=0.142 Sum_probs=38.6
Q ss_pred hhHHHHhhcc--ccccceeeEEEeecCCChHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHhhhhhhhhcCC
Q psy13798 12 DKWLWKLCGS--VWTGSRFYTHIWFKSPLSTELYQTMRRVHDAVVSVAGSLQSTQPEVQYLKERHLQLRQTYLKDS 85 (614)
Q Consensus 12 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~pqdL~~~m~klhetfValAg~lq~~H~~V~~~KeqyL~~Rr~~l~D~ 85 (614)
+++|-++.++ +++ ++-++.+.++. ++.||..+|+-|+|.+.... + -.+.|+..|++.++.+|.+..|+
T Consensus 70 ~~~l~~~g~~~na~t-~~~~t~~~~~~-~~~~l~~~l~ll~d~~~~p~--f--~~~~~~~e~~~v~~e~~~~~~~~ 139 (443)
T 1hr6_B 70 ELEIENIGSHLNAYT-SRENTVYYAKS-LQEDIPKAVDILSDILTKSV--L--DNSAIERERDVIIRESEEVDKMY 139 (443)
T ss_dssp HHHHHHTTCEEEEEE-CSSEEEEEEEE-EGGGHHHHHHHHHHHHHSBC--C--CHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCeEEEEE-CCCeEEEEEEe-cHHHHHHHHHHHHHHHhCCC--C--CHHHHHHHHHHHHHHHHhhhCCh
Confidence 3455555443 344 34566666665 45789999999999775432 2 12334555555555444444443
No 103
>3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginos structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa}
Probab=20.50 E-value=65 Score=28.00 Aligned_cols=14 Identities=21% Similarity=0.178 Sum_probs=8.3
Q ss_pred HHHHHHHHHHhhhh
Q psy13798 65 PEVQYLKERHLQLR 78 (614)
Q Consensus 65 ~~V~~~KeqyL~~R 78 (614)
.+++.+.++||.+|
T Consensus 226 g~~~~i~~k~~~~r 239 (239)
T 3kbr_A 226 GLLRQRMEHWLEYR 239 (239)
T ss_dssp THHHHHHHHHC---
T ss_pred CcHHHHHHHHhccC
Confidence 35677888888887
No 104
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=20.18 E-value=41 Score=29.35 Aligned_cols=42 Identities=21% Similarity=0.286 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHhhhccch---hhHHHHHHHHHHhhhhhhhhc
Q psy13798 42 LYQTMRRVHDAVVSVAGSLQS---TQPEVQYLKERHLQLRQTYLK 83 (614)
Q Consensus 42 L~~~m~klhetfValAg~lq~---~H~~V~~~KeqyL~~Rr~~l~ 83 (614)
|..-.++.---||.++-|... .+..||.|||+|-..-|.+++
T Consensus 41 LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~ 85 (93)
T 4iej_A 41 LFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLAN 85 (93)
T ss_dssp HHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 444445555578999999854 367999999999988877764
No 105
>1e52_A Excinuclease ABC subunit; DNA excision repair, UVRB, DNA repair, UVRC binding domain; NMR {Escherichia coli} SCOP: a.2.9.1 PDB: 1qoj_A
Probab=20.02 E-value=95 Score=25.16 Aligned_cols=44 Identities=18% Similarity=0.315 Sum_probs=35.8
Q ss_pred ChHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHhhhhhhhhc
Q psy13798 38 LSTELYQTMRRVHDAVVSVAGSLQSTQPEVQYLKERHLQLRQTYLK 83 (614)
Q Consensus 38 ~pqdL~~~m~klhetfValAg~lq~~H~~V~~~KeqyL~~Rr~~l~ 83 (614)
.+.||...+++|.+-....|.+|. =|+...++++...||+.+|+
T Consensus 18 s~~~~~~~i~~Le~~M~~AA~~le--FE~AA~lRD~I~~L~~~l~~ 61 (63)
T 1e52_A 18 SPKALQQKIHELEGLMMQHAQNLE--FEEAAQIRDQLHQLRELFIA 61 (63)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHTTC--HHHHTTHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHccC--HHHHHHHHHHHHHHHHHHhc
Confidence 467899999999999999998886 46777788888888877654
No 106
>2r5u_A Replicative DNA helicase; DNAB, primase, replication, ATP-binding, autocatal cleavage, DNA replication, DNA-binding, endonuclease; 1.90A {Mycobacterium tuberculosis}
Probab=20.00 E-value=75 Score=29.69 Aligned_cols=26 Identities=23% Similarity=0.431 Sum_probs=17.6
Q ss_pred CCChHHHHHHHHHHHHH-----HHHhhhccc
Q psy13798 36 SPLSTELYQTMRRVHDA-----VVSVAGSLQ 61 (614)
Q Consensus 36 ~~~pqdL~~~m~klhet-----fValAg~lq 61 (614)
.|.=|.|..+|.+||+. .|.|..+|+
T Consensus 62 ~~~H~~If~ai~~L~~~g~piD~vtv~~~L~ 92 (200)
T 2r5u_A 62 RPAHQNVYDAILDLYGRGEPADAVTVAAELD 92 (200)
T ss_dssp SHHHHHHHHHHHHHHHTTCCCSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 45567888888888874 566655553
Done!