Query psy13798
Match_columns 614
No_of_seqs 111 out of 118
Neff 3.0
Searched_HMMs 13730
Date Fri Aug 16 20:45:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13798.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/13798hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1g4us1 a.24.11.1 (S:167-296) 77.1 0.57 4.1E-05 41.0 2.6 36 32-71 90-125 (130)
2 d1hr6b1 d.185.1.1 (B:24-245) M 76.6 0.95 6.9E-05 38.2 3.9 55 32-90 86-140 (222)
3 d1ppja1 d.185.1.1 (A:2-233) Cy 62.9 2.3 0.00017 36.4 3.3 74 13-90 76-149 (232)
4 d1ybha1 c.31.1.3 (A:281-459) A 54.9 2.5 0.00018 36.4 2.1 40 40-79 133-177 (179)
5 d1he1a_ a.24.11.1 (A:) ExoS to 53.0 3.2 0.00023 36.3 2.5 26 33-58 100-125 (135)
6 d2jf2a1 b.81.1.1 (A:1-262) UDP 46.6 4.8 0.00035 36.6 2.7 47 35-82 204-250 (262)
7 d1hr6a1 d.185.1.1 (A:14-233) M 46.5 7.3 0.00054 33.4 3.8 57 29-90 86-142 (220)
8 d2f66c1 a.2.17.3 (C:142-206) V 44.2 12 0.0009 29.0 4.3 41 41-81 12-54 (65)
9 d2prra1 a.152.1.3 (A:5-194) Un 42.6 6.9 0.00051 33.4 3.0 55 33-87 6-63 (190)
10 d1ppjb1 d.185.1.1 (B:17-235) C 41.4 7.5 0.00055 33.3 3.1 57 26-87 85-141 (219)
11 d1x3zb1 a.189.1.1 (B:253-309) 38.4 4.5 0.00033 30.6 0.9 31 55-85 16-46 (57)
12 d1f2ea1 a.45.1.1 (A:81-201) Cl 38.3 3.8 0.00027 32.3 0.5 53 5-60 8-60 (121)
13 d1u8va2 e.6.1.1 (A:1-275) 4-hy 35.1 16 0.0012 33.7 4.5 36 9-44 48-84 (275)
14 d1lxna_ d.58.48.1 (A:) Hypothe 34.2 18 0.0013 29.4 4.2 49 25-73 33-98 (99)
15 d1s35a2 a.7.1.1 (A:1169-1273) 32.8 32 0.0023 25.8 5.3 11 75-85 95-105 (105)
16 d1tbga_ b.69.4.1 (A:) beta1-su 32.3 16 0.0012 30.0 3.6 32 58-91 2-33 (340)
17 d2oqoa1 d.2.1.10 (A:57-243) Pe 31.2 15 0.0011 32.8 3.4 39 36-77 60-107 (187)
18 d2hmfa2 d.58.18.10 (A:404-470) 31.1 8.6 0.00063 28.9 1.5 16 39-54 50-65 (67)
19 d2liga_ a.24.2.1 (A:) Aspartat 30.3 31 0.0023 29.8 5.3 35 46-81 76-110 (157)
20 d1q2la4 d.185.1.1 (A:24-263) P 30.0 31 0.0023 29.3 5.2 72 14-90 86-159 (240)
21 d2asra_ a.24.2.1 (A:) Aspartat 29.4 34 0.0025 29.1 5.3 33 47-80 64-96 (142)
22 d2olua1 d.2.1.10 (A:68-292) Pe 28.9 11 0.00083 34.5 2.2 28 47-77 100-127 (225)
23 d1zyma1 a.60.10.1 (A:22-144) E 27.9 31 0.0023 27.9 4.6 50 37-86 10-63 (123)
24 d1neka1 a.7.3.1 (A:451-588) Su 27.8 24 0.0017 29.5 3.9 18 39-56 6-23 (138)
25 d1st6a6 a.24.9.1 (A:647-718) V 27.6 9.8 0.00071 29.9 1.3 30 54-83 29-58 (72)
26 d2c1xa1 c.87.1.10 (A:7-456) UD 26.9 25 0.0018 31.5 4.1 55 34-88 388-450 (450)
27 d1k78a1 a.4.1.5 (A:19-81) Pax- 26.3 30 0.0022 26.2 3.9 39 36-74 13-54 (63)
28 d1s21a_ d.166.1.4 (A:) AvrPphF 26.2 11 0.00078 34.0 1.4 33 59-91 9-45 (176)
29 d2j0wa3 d.58.18.10 (A:386-449) 25.2 16 0.0011 27.1 2.0 16 39-54 48-63 (64)
30 d1xo3a_ d.15.3.3 (A:) C9orf74 25.1 16 0.0011 29.0 2.1 27 62-88 37-63 (101)
31 d1toaa_ c.92.2.2 (A:) Periplas 24.7 27 0.002 31.0 3.9 48 28-78 99-154 (277)
32 d2p06a1 a.204.1.3 (A:1-84) Hyp 24.6 14 0.0011 29.1 1.7 31 44-83 39-69 (84)
33 d1r5la2 c.13.1.1 (A:91-275) Al 24.2 12 0.00084 31.6 1.2 30 56-85 155-184 (185)
34 d1f45b_ a.26.1.1 (B:) Heterodi 23.7 20 0.0014 32.4 2.7 30 60-89 83-113 (178)
35 d1hw1a2 a.78.1.1 (A:79-230) Fa 23.7 51 0.0037 26.3 5.1 48 38-86 59-106 (152)
36 d1io1a_ e.32.1.1 (A:) Phase 1 23.6 40 0.0029 29.1 4.8 38 40-77 27-70 (395)
37 d1fxkc_ a.2.5.1 (C:) Prefoldin 23.2 47 0.0034 26.7 4.9 51 22-80 74-124 (133)
38 d1w36c1 c.37.1.19 (C:1-347) Ex 23.1 7.2 0.00052 37.5 -0.4 77 6-83 59-147 (347)
39 d2hs5a2 a.78.1.1 (A:94-231) Pu 23.1 16 0.0011 28.6 1.8 69 10-83 66-135 (138)
40 d1jt6a2 a.121.1.1 (A:73-187) M 22.8 17 0.0012 29.7 2.0 44 41-84 18-61 (115)
41 d1ryia2 d.16.1.3 (A:219-306) G 21.9 9.7 0.0007 28.7 0.2 49 9-57 23-72 (88)
42 d1z54a1 d.38.1.1 (A:1-132) Pro 21.7 12 0.00088 29.5 0.8 23 29-51 105-131 (132)
43 d2nw8a1 a.266.1.1 (A:23-284) T 20.9 12 0.00086 33.8 0.6 72 3-82 14-99 (262)
44 d2iw5b1 a.4.1.3 (B:376-440) RE 20.9 17 0.0012 26.6 1.4 42 38-81 9-53 (65)
45 d1nrla_ a.123.1.1 (A:) Pregnan 20.7 25 0.0018 32.0 2.9 22 60-82 215-236 (292)
46 d1pn3a_ c.87.1.5 (A:) TDP-epi- 20.4 70 0.0051 27.5 5.7 45 35-79 341-391 (391)
47 d2oyoa1 a.152.1.3 (A:10-195) U 20.1 34 0.0025 28.8 3.4 54 34-87 6-62 (186)
No 1
>d1g4us1 a.24.11.1 (S:167-296) SptP tyrosine phosphatase {Salmonella typhimurium [TaxId: 90371]}
Probab=77.13 E-value=0.57 Score=41.03 Aligned_cols=36 Identities=22% Similarity=0.505 Sum_probs=28.9
Q ss_pred EeecCCChHHHHHHHHHHHHHHHHhhhccchhhHHHHHHH
Q psy13798 32 IWFKSPLSTELYQTMRRVHDAVVSVAGSLQSTQPEVQYLK 71 (614)
Q Consensus 32 ~~~~~~~pqdL~~~m~klhetfValAg~lq~~H~~V~~~K 71 (614)
-|..+-.|+||+++|++||+ |+.+|+-+..+||..|
T Consensus 90 ~~V~~AS~e~l~ea~~~Lh~----~~~eva~l~~~ve~~~ 125 (130)
T d1g4us1 90 RWVDKASTHELTQAVKKIHV----IAKELKNVTAELEKIE 125 (130)
T ss_dssp HHHHHCCHHHHHHHHHHHHH----HHHHTHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHh
Confidence 37888999999999999997 4566677777777655
No 2
>d1hr6b1 d.185.1.1 (B:24-245) Mitochondrial processing peptidase (MPP) beta chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=76.56 E-value=0.95 Score=38.19 Aligned_cols=55 Identities=9% Similarity=0.170 Sum_probs=41.0
Q ss_pred EeecCCChHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHhhhhhhhhcCCCcccc
Q psy13798 32 IWFKSPLSTELYQTMRRVHDAVVSVAGSLQSTQPEVQYLKERHLQLRQTYLKDSTNVFD 90 (614)
Q Consensus 32 ~~~~~~~pqdL~~~m~klhetfValAg~lq~~H~~V~~~KeqyL~~Rr~~l~D~tdvFe 90 (614)
.+..+-+++||..+|+.|++.+... ++ -.+.++..|++.++-++...+|+..++.
T Consensus 86 ~~~~~~~~~~l~~~l~ll~~~l~~p--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (222)
T d1hr6b1 86 VYYAKSLQEDIPKAVDILSDILTKS--VL--DNSAIERERDVIIRESEEVDKMYDEVVF 140 (222)
T ss_dssp EEEEEEEGGGHHHHHHHHHHHHHSB--CC--CHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cccccccHHHHHHHHHHHHHHhhcc--cc--cHHHhhhhhhhhccccccccccchhHHH
Confidence 3444577899999999999876532 23 3467888888888888888888877665
No 3
>d1ppja1 d.185.1.1 (A:2-233) Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [TaxId: 9913]}
Probab=62.87 E-value=2.3 Score=36.39 Aligned_cols=74 Identities=16% Similarity=0.103 Sum_probs=41.8
Q ss_pred hHHHHhhccccccceeeEEEeecCCChHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHhhhhhhhhcCCCcccc
Q psy13798 13 KWLWKLCGSVWTGSRFYTHIWFKSPLSTELYQTMRRVHDAVVSVAGSLQSTQPEVQYLKERHLQLRQTYLKDSTNVFD 90 (614)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~pqdL~~~m~klhetfValAg~lq~~H~~V~~~KeqyL~~Rr~~l~D~tdvFe 90 (614)
+-+.++++.+..-.....+++.-+-++.||..+++.|++.+.... + --+.++..|+..+...+...+|+..++.
T Consensus 76 ~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~ll~~~l~~p~--~--~~~~~~~~k~~~~~~~~~~~~~~~~~~~ 149 (232)
T d1ppja1 76 KEVESMGAHLNAYSTREHTAYYIKALSKDLPKAVELLADIVQNCS--L--EDSQIEKERDVILQELQENDTSMRDVVF 149 (232)
T ss_dssp HHHHHTTCEEEEEECSSCEEEEEEEEGGGHHHHHHHHHHHHHHBC--C--CHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHhhhcccccccccchhhheeccchhHHHHHHHHHHHHHhhhcc--c--cHHHhhhhhceeecchhhhhhhHHHHHH
Confidence 345566665554444333444444568899999999999887542 2 2233444444444444444555544443
No 4
>d1ybha1 c.31.1.3 (A:281-459) Acetohydroxyacid synthase catalytic subunit {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]}
Probab=54.94 E-value=2.5 Score=36.35 Aligned_cols=40 Identities=8% Similarity=0.155 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHh----hhccchhhHHHHHHHHHH-hhhhh
Q psy13798 40 TELYQTMRRVHDAVVSV----AGSLQSTQPEVQYLKERH-LQLRQ 79 (614)
Q Consensus 40 qdL~~~m~klhetfVal----Ag~lq~~H~~V~~~Keqy-L~~Rr 79 (614)
-|++..|++|.|.+-.- ..++...+++++.+||+| |+|++
T Consensus 133 ~D~~~~l~~L~~~l~~~~~~~~~~~~~W~~~i~~~k~~~p~~~~~ 177 (179)
T d1ybha1 133 GDVKLALQGMNKVLENRAEELKLDFGVWRNELNVQKQKFPLSFKT 177 (179)
T ss_dssp SCHHHHHHHHHHHHHHTHHHHCCCCHHHHHHHHHHHHHSCCCCCC
T ss_pred eccHHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhCCCCCCC
Confidence 47888888887765332 222345577788888877 55543
No 5
>d1he1a_ a.24.11.1 (A:) ExoS toxin {Pseudomonas aeruginosa [TaxId: 287]}
Probab=53.01 E-value=3.2 Score=36.33 Aligned_cols=26 Identities=12% Similarity=0.031 Sum_probs=21.2
Q ss_pred eecCCChHHHHHHHHHHHHHHHHhhh
Q psy13798 33 WFKSPLSTELYQTMRRVHDAVVSVAG 58 (614)
Q Consensus 33 ~~~~~~pqdL~~~m~klhetfValAg 58 (614)
|..+-.|++|+.+|++||+-+--||-
T Consensus 100 ~V~~As~e~l~~~~~qlh~l~~eva~ 125 (135)
T d1he1a_ 100 LVLDASPELRREITDQLHQVMSEVAL 125 (135)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 66788999999999999987654443
No 6
>d2jf2a1 b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltransferase {Escherichia coli, gene lpxA [TaxId: 562]}
Probab=46.59 E-value=4.8 Score=36.64 Aligned_cols=47 Identities=17% Similarity=0.283 Sum_probs=36.2
Q ss_pred cCCChHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHhhhhhhhh
Q psy13798 35 KSPLSTELYQTMRRVHDAVVSVAGSLQSTQPEVQYLKERHLQLRQTYL 82 (614)
Q Consensus 35 ~~~~pqdL~~~m~klhetfValAg~lq~~H~~V~~~KeqyL~~Rr~~l 82 (614)
..-...|+.+.|+|+++.+-.+-.+|+++.++||+++|+.-. +|+++
T Consensus 204 R~g~~~e~i~~lk~~~k~L~~~~~~l~~~~~~l~~~~~~~~~-v~~~i 250 (262)
T d2jf2a1 204 RRGFSREAITAIRNAYKLIYRSGKTLDEVKPEIAELAETYPE-VKAFT 250 (262)
T ss_dssp HTTCCHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHTTCGG-GHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhccCCHH-HHHHH
Confidence 344567788889999999888888999999999988887754 44443
No 7
>d1hr6a1 d.185.1.1 (A:14-233) Mitochondrial processing peptidase (MPP) alpha chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=46.47 E-value=7.3 Score=33.44 Aligned_cols=57 Identities=12% Similarity=-0.032 Sum_probs=38.5
Q ss_pred eEEEeecCCChHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHhhhhhhhhcCCCcccc
Q psy13798 29 YTHIWFKSPLSTELYQTMRRVHDAVVSVAGSLQSTQPEVQYLKERHLQLRQTYLKDSTNVFD 90 (614)
Q Consensus 29 ~~~~~~~~~~pqdL~~~m~klhetfValAg~lq~~H~~V~~~KeqyL~~Rr~~l~D~tdvFe 90 (614)
|+.+++ +-+++||..+|+-|+|.+.... ---+.++..|++-++-++...+||.+++.
T Consensus 86 ~~~~~~-~~~~~~~~~~l~ll~~~l~~p~----~~~~~~~~ek~~~~~~~~~~~~~p~~~~~ 142 (220)
T d1hr6a1 86 NLMYQA-SVFNQDVGKMLQLMSETVRFPK----ITEQELQEQKLSAEYEIDEVWMKPELVLP 142 (220)
T ss_dssp CEEEEE-EECGGGHHHHHHHHHHHHHCBC----CCHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ceeeec-cccccccchhhhhhhHhhhccc----chhhhhhhhcchhhhhhhhhhccchhhhh
Confidence 444555 4578999999999999886432 23445666667777777777777766554
No 8
>d2f66c1 a.2.17.3 (C:142-206) Vacuolar protein sorting-associated protein 37, VPS37 (SRN2) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=44.19 E-value=12 Score=28.96 Aligned_cols=41 Identities=12% Similarity=0.285 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHh--hhccchhhHHHHHHHHHHhhhhhhh
Q psy13798 41 ELYQTMRRVHDAVVSV--AGSLQSTQPEVQYLKERHLQLRQTY 81 (614)
Q Consensus 41 dL~~~m~klhetfVal--Ag~lq~~H~~V~~~KeqyL~~Rr~~ 81 (614)
.|.+-|++|-|.--.| -.|.+.--..|...-+|||++|-.|
T Consensus 12 kL~~~~~~ld~~s~~l~~~~r~~~~s~elD~Fi~qYl~~RTeY 54 (65)
T d2f66c1 12 KLEQNTKKLDEESSQLETTTRSIDSADDLDQFIKNYLDIRTQY 54 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHH
Confidence 4566677776654444 3355555566999999999999776
No 9
>d2prra1 a.152.1.3 (A:5-194) Uncharacterized protein Reut_A2532 {Ralstonia eutropha [TaxId: 106590]}
Probab=42.64 E-value=6.9 Score=33.35 Aligned_cols=55 Identities=13% Similarity=0.057 Sum_probs=39.1
Q ss_pred eecCCChHHHHHHHHHHHHHHHHhhhccc---hhhHHHHHHHHHHhhhhhhhhcCCCc
Q psy13798 33 WFKSPLSTELYQTMRRVHDAVVSVAGSLQ---STQPEVQYLKERHLQLRQTYLKDSTN 87 (614)
Q Consensus 33 ~~~~~~pqdL~~~m~klhetfValAg~lq---~~H~~V~~~KeqyL~~Rr~~l~D~td 87 (614)
|++-|-+.||..-+|.|+|.+..--|+|= .++...-.+=+.|+++.++++++...
T Consensus 6 rlp~~~~~~~~~~~~~~~~~~~~~~G~vpn~~~~la~~P~~l~~~~~~~~~~~~~~~~ 63 (190)
T d2prra1 6 RYPVPELAALPDDIRQRILEVQDKAGFVPNVFLTLAHRPDEFRAFFAYHDALMLKDGG 63 (190)
T ss_dssp SSCCCCGGGSCHHHHHHHHHHHHHHSSCCHHHHHHTTSHHHHHHHHHHHHHHHSSCSS
T ss_pred CCCCCCcccCCHHHHHHHHHHHHHhCCCHHHHHHHHhCHHHHHHHHHHHHHHHhcccC
Confidence 67778888888888999998877666542 23333445667899998888765544
No 10
>d1ppjb1 d.185.1.1 (B:17-235) Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [TaxId: 9913]}
Probab=41.36 E-value=7.5 Score=33.34 Aligned_cols=57 Identities=12% Similarity=0.060 Sum_probs=35.8
Q ss_pred ceeeEEEeecCCChHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHhhhhhhhhcCCCc
Q psy13798 26 SRFYTHIWFKSPLSTELYQTMRRVHDAVVSVAGSLQSTQPEVQYLKERHLQLRQTYLKDSTN 87 (614)
Q Consensus 26 ~~~~~~~~~~~~~pqdL~~~m~klhetfValAg~lq~~H~~V~~~KeqyL~~Rr~~l~D~td 87 (614)
+|-|+.+.++. ++.||..+|.-|.|.+.. -++.+ +.|+..|++.++.++..+.|+.+
T Consensus 85 ~~d~t~~~~~~-~~~~~~~~l~ll~~~l~~--p~~~~--~~~~~~~~~i~~e~~~~~~~p~~ 141 (219)
T d1ppjb1 85 TRENMAYTVEC-LRDDVDILMEFLLNVTTA--PEFRR--WEVAALQPQLRIDKAVALQNPQA 141 (219)
T ss_dssp CSSCEEEEEEE-EGGGHHHHHHHHHHHHHC--BCCCH--HHHHHHTHHHHHHHHHHTTSHHH
T ss_pred hhheeeeeeee-ecchhHHHHHHHHHhccC--Ccchh--hhhhhhhHHHHHHHHHHhhccch
Confidence 45567777766 488999999998887653 23332 45555555555555555555543
No 11
>d1x3zb1 a.189.1.1 (B:253-309) Rad23 STI1 domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=38.39 E-value=4.5 Score=30.57 Aligned_cols=31 Identities=23% Similarity=0.400 Sum_probs=27.4
Q ss_pred HhhhccchhhHHHHHHHHHHhhhhhhhhcCC
Q psy13798 55 SVAGSLQSTQPEVQYLKERHLQLRQTYLKDS 85 (614)
Q Consensus 55 alAg~lq~~H~~V~~~KeqyL~~Rr~~l~D~ 85 (614)
.+-|+-..+-..+|.+.++|-.||..++.||
T Consensus 16 vvsg~peal~plle~ls~ryp~lre~im~np 46 (57)
T d1x3zb1 16 VVSGNPEALAPLLENISARYPQLREHIMANP 46 (57)
T ss_dssp HHHHCGGGHHHHHHHHHTTCHHHHHHHHTCH
T ss_pred HhcCChHHHHHHHHHHHHhhHHHHHHHHhCH
Confidence 4568888888899999999999999999887
No 12
>d1f2ea1 a.45.1.1 (A:81-201) Class beta GST {Sphingomonas paucimobilis [TaxId: 13689]}
Probab=38.25 E-value=3.8 Score=32.34 Aligned_cols=53 Identities=11% Similarity=0.077 Sum_probs=33.5
Q ss_pred CcccccchhHHHHhhccccccceeeEEEeecCCChHHHHHHHHHHHHHHHHhhhcc
Q psy13798 5 SPIRFHHDKWLWKLCGSVWTGSRFYTHIWFKSPLSTELYQTMRRVHDAVVSVAGSL 60 (614)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pqdL~~~m~klhetfValAg~l 60 (614)
++=|-++++||.-++..+-- -|.++|.+..-++....+.++|++.+-.|-.+|
T Consensus 8 ~~~Ra~~~~wl~f~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~l~~le~~L 60 (121)
T d1f2ea1 8 SLDRYRLLSRLSFLGSEFHK---AFVPLFAPATSDEAKAAAAESVKNHLAALDKEL 60 (121)
T ss_dssp CHHHHHHHHHHHHHHHTHHH---HHHHHHCSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcchHH---HHHHHHCcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 55688999999888887743 234555555545555666666666655554443
No 13
>d1u8va2 e.6.1.1 (A:1-275) 4-hydroxybutyryl-CoA dehydratase AbfD, NM domains {Clostridium aminobutyricum [TaxId: 33953]}
Probab=35.10 E-value=16 Score=33.66 Aligned_cols=36 Identities=8% Similarity=-0.088 Sum_probs=21.9
Q ss_pred ccchhHHHHhhccccccceeeEEEeecCC-ChHHHHH
Q psy13798 9 FHHDKWLWKLCGSVWTGSRFYTHIWFKSP-LSTELYQ 44 (614)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~pqdL~~ 44 (614)
.|||.-++.+|--.+....-..++||+-| .++||..
T Consensus 48 ~~~~pe~~d~lt~~~~~~g~~~~~~f~~p~s~edL~~ 84 (275)
T d1u8va2 48 LAQDPQYADLMTTKSNLIGKTINRFANLHQSTDDLRK 84 (275)
T ss_dssp HHHCTTTHHHHEEECTTTSSEEEGGGCCCCSHHHHHH
T ss_pred hhcCcccccceeeecCCCCccceehhccCCCHHHHHH
Confidence 34555445555444444444678899888 5777754
No 14
>d1lxna_ d.58.48.1 (A:) Hypothetical protein MTH1187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=34.23 E-value=18 Score=29.40 Aligned_cols=49 Identities=18% Similarity=0.327 Sum_probs=34.0
Q ss_pred cceeeEEEe---ecCCChHHHHHHHHHHHHHHHHh-hhcc-------------chhhHHHHHHHHH
Q psy13798 25 GSRFYTHIW---FKSPLSTELYQTMRRVHDAVVSV-AGSL-------------QSTQPEVQYLKER 73 (614)
Q Consensus 25 ~~~~~~~~~---~~~~~pqdL~~~m~klhetfVal-Ag~l-------------q~~H~~V~~~Keq 73 (614)
|-+|..|-. ...+--.||...++++||..+.+ |-|+ +.+++||+..+|+
T Consensus 33 Gl~y~~~pmgT~IEg~d~dev~~~v~~~he~~~~~G~~RV~t~iKId~R~dk~~~~~~Kv~sV~~k 98 (99)
T d1lxna_ 33 NVRYEISGMGTLLEAEDLDELMEAVKAAHEAVLQAGSDRVYTTLKIDDRRDADRGLRDKVESVKEK 98 (99)
T ss_dssp SCEEEEETTEEEEEESSHHHHHHHHHHHHHHHHHTTCSEEEEEEEEEEESSSCCCHHHHHHHHHHH
T ss_pred CCCeEecCCcceecCCCHHHHHHHHHHHHHHHHHCCCCeEEEEEEEeccCCCCCCHHHHHHHHHhh
Confidence 555555532 23344589999999999998887 5444 5678888877764
No 15
>d1s35a2 a.7.1.1 (A:1169-1273) Spectrin beta chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=32.78 E-value=32 Score=25.84 Aligned_cols=11 Identities=27% Similarity=0.323 Sum_probs=6.3
Q ss_pred hhhhhhhhcCC
Q psy13798 75 LQLRQTYLKDS 85 (614)
Q Consensus 75 L~~Rr~~l~D~ 85 (614)
+.-||..|+|+
T Consensus 95 ~~~r~~~L~d~ 105 (105)
T d1s35a2 95 AQEASVLLRDN 105 (105)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHccCC
Confidence 34466666664
No 16
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}
Probab=32.27 E-value=16 Score=29.97 Aligned_cols=32 Identities=16% Similarity=0.260 Sum_probs=23.9
Q ss_pred hccchhhHHHHHHHHHHhhhhhhhhcCCCccccc
Q psy13798 58 GSLQSTQPEVQYLKERHLQLRQTYLKDSTNVFDV 91 (614)
Q Consensus 58 g~lq~~H~~V~~~KeqyL~~Rr~~l~D~tdvFe~ 91 (614)
.+|+++.+++|.+|++....|+.. . .+++.+.
T Consensus 2 ~~~~~l~~~~~~l~~~~~~~~~~~-~-~~~~~~~ 33 (340)
T d1tbga_ 2 SELDQLRQEAEQLKNQIRDARKAC-A-DATLSQI 33 (340)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHH-C-CCCHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhc-c-cchHHHH
Confidence 478999999999999988888754 2 3445553
No 17
>d2oqoa1 d.2.1.10 (A:57-243) Penicillin-binding protein 1a, PBP1a {Aquifex aeolicus [TaxId: 63363]}
Probab=31.15 E-value=15 Score=32.81 Aligned_cols=39 Identities=18% Similarity=0.318 Sum_probs=27.0
Q ss_pred CCChHHHHH---------HHHHHHHHHHHhhhccchhhHHHHHHHHHHhhh
Q psy13798 36 SPLSTELYQ---------TMRRVHDAVVSVAGSLQSTQPEVQYLKERHLQL 77 (614)
Q Consensus 36 ~~~pqdL~~---------~m~klhetfValAg~lq~~H~~V~~~KeqyL~~ 77 (614)
|-+.|.|.+ -.|||-|.++|+ +|...+.|= ++-|.|||.
T Consensus 60 STITqQl~k~l~~~~~rs~~rK~~E~~~a~--~lE~~~sK~-eILe~YLN~ 107 (187)
T d2oqoa1 60 STITQQLAKNLFLTRERTLERKIKEALLAI--KIERTFDKK-KIMELYLNQ 107 (187)
T ss_dssp CCHHHHHHHTTSSSCCCCHHHHHHHHHHHH--HHHHHSCHH-HHHHHHHHH
T ss_pred chhhHHHHHHhccCCCCCHHHHHHHHHHHH--HHHHHhCHH-HHHHHHHHH
Confidence 455666654 357999987665 677777664 455899995
No 18
>d2hmfa2 d.58.18.10 (A:404-470) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}
Probab=31.10 E-value=8.6 Score=28.88 Aligned_cols=16 Identities=19% Similarity=0.615 Sum_probs=14.4
Q ss_pred hHHHHHHHHHHHHHHH
Q psy13798 39 STELYQTMRRVHDAVV 54 (614)
Q Consensus 39 pqdL~~~m~klhetfV 54 (614)
-.|+.++++.|||.|+
T Consensus 50 ~~d~~~Av~~Lh~~F~ 65 (67)
T d2hmfa2 50 EKDLLNCVRKLHEKFI 65 (67)
T ss_dssp GGGHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4799999999999996
No 19
>d2liga_ a.24.2.1 (A:) Aspartate receptor, ligand-binding domain {Salmonella typhimurium [TaxId: 90371]}
Probab=30.34 E-value=31 Score=29.84 Aligned_cols=35 Identities=6% Similarity=0.044 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhhhccchhhHHHHHHHHHHhhhhhhh
Q psy13798 46 MRRVHDAVVSVAGSLQSTQPEVQYLKERHLQLRQTY 81 (614)
Q Consensus 46 m~klhetfValAg~lq~~H~~V~~~KeqyL~~Rr~~ 81 (614)
-++-|+.|.++. ++.+..+..+.+||.|-.|+..+
T Consensus 76 A~~~f~~f~~~~-~~~~~~~~~~~l~~sY~~~~~aL 110 (157)
T d2liga_ 76 AAAHYANFKNMT-PLPAMAEASANVDEKYQRYQAAL 110 (157)
T ss_dssp HHHHHHHHHHSC-CCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcc-CCCCccHHHHHHHHHHHHHHHHH
Confidence 345577787754 56777788889999999988653
No 20
>d1q2la4 d.185.1.1 (A:24-263) Protease III {Escherichia coli [TaxId: 562]}
Probab=30.00 E-value=31 Score=29.33 Aligned_cols=72 Identities=10% Similarity=0.011 Sum_probs=43.2
Q ss_pred HHHHhhccccc--cceeeEEEeecCCChHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHhhhhhhhhcCCCcccc
Q psy13798 14 WLWKLCGSVWT--GSRFYTHIWFKSPLSTELYQTMRRVHDAVVSVAGSLQSTQPEVQYLKERHLQLRQTYLKDSTNVFD 90 (614)
Q Consensus 14 ~~~~~~~~~~~--~~~~~~~~~~~~~~pqdL~~~m~klhetfValAg~lq~~H~~V~~~KeqyL~~Rr~~l~D~tdvFe 90 (614)
.+++.++.-+. -++-|+.++... ++.+|..+|+-|+|.+..-.=.= +.|+..|++.++-.+....|+..+..
T Consensus 86 ~~~~~~g~~~na~~~~~~t~~~~~~-~~~~l~~~l~ll~~~l~~p~~~~----~~~~~~k~~~~~el~~~~~~~~~~~~ 159 (240)
T d1q2la4 86 EYLKMHGGSHNASTAPYRTAFYLEV-ENDALPGAVDRLADAIAEPLLDK----KYAERERNAVNAELTMARTRDGMRMA 159 (240)
T ss_dssp HHHHTTTCEEEEEECSSCEEEEEEE-CGGGHHHHHHHHHHHHHCBCCCS----TTHHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred HHHHHcCCeecccccccceeeeccc-cccccccchhhhhHHhcCCcchh----hhhhhhhhhhhhhhhhhcchhHHHHH
Confidence 45566665442 245566666654 58999999999999877544333 34555555555554555555544443
No 21
>d2asra_ a.24.2.1 (A:) Aspartate receptor, ligand-binding domain {Escherichia coli [TaxId: 562]}
Probab=29.37 E-value=34 Score=29.09 Aligned_cols=33 Identities=12% Similarity=0.064 Sum_probs=25.2
Q ss_pred HHHHHHHHHhhhccchhhHHHHHHHHHHhhhhhh
Q psy13798 47 RRVHDAVVSVAGSLQSTQPEVQYLKERHLQLRQT 80 (614)
Q Consensus 47 ~klhetfValAg~lq~~H~~V~~~KeqyL~~Rr~ 80 (614)
++-|+.|.+|. ++.+.++..+.+||.|-.|+..
T Consensus 64 ~~~~~~f~a~~-~~~~~~~~~~~l~~~Y~~y~~a 96 (142)
T d2asra_ 64 ATHYKKFKSMA-PLPEMVATSRNIDEKYKNYYTA 96 (142)
T ss_dssp HHHHHHHHHSC-CCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCC-CCccchHHHHHHHHHHHHHHHH
Confidence 44577787764 5777778888999999988764
No 22
>d2olua1 d.2.1.10 (A:68-292) Penicillin-binding protein 2, PBP2 {Staphylococcus aureus [TaxId: 1280]}
Probab=28.90 E-value=11 Score=34.54 Aligned_cols=28 Identities=18% Similarity=0.226 Sum_probs=21.5
Q ss_pred HHHHHHHHHhhhccchhhHHHHHHHHHHhhh
Q psy13798 47 RRVHDAVVSVAGSLQSTQPEVQYLKERHLQL 77 (614)
Q Consensus 47 ~klhetfValAg~lq~~H~~V~~~KeqyL~~ 77 (614)
|||.|.++|+ +|...+.| +++-|.|||.
T Consensus 100 RK~~E~~~A~--~lE~~~sK-~eILe~YLN~ 127 (225)
T d2olua1 100 RKAQEAYLSY--RLEQEYSK-DDIFQVYLNK 127 (225)
T ss_dssp TTHHHHHHHH--HHHHHSCH-HHHHHHHHHH
T ss_pred HHHHHHHHHH--HHHHHhCH-HHHHHHHHHh
Confidence 7899988776 77777766 4556899996
No 23
>d1zyma1 a.60.10.1 (A:22-144) Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain {Escherichia coli [TaxId: 562]}
Probab=27.87 E-value=31 Score=27.93 Aligned_cols=50 Identities=12% Similarity=0.133 Sum_probs=37.3
Q ss_pred CChHHHHHHHHHHHHHHHHhhhccchhhHHHHHH--HH--HHhhhhhhhhcCCC
Q psy13798 37 PLSTELYQTMRRVHDAVVSVAGSLQSTQPEVQYL--KE--RHLQLRQTYLKDST 86 (614)
Q Consensus 37 ~~pqdL~~~m~klhetfValAg~lq~~H~~V~~~--Ke--qyL~~Rr~~l~D~t 86 (614)
..+.|+..-++|||+++-....+|+.+.++++.. +| .-|.--+.+|+||.
T Consensus 10 i~~~~v~~E~~rl~~A~~~~~~~L~~l~~~~~~~~~~e~a~If~ah~~iL~D~~ 63 (123)
T d1zyma1 10 ISADQVDQEVERFLSGRAKASAQLETIKTKAGETFGEEKEAIFEGHIMLLEDEE 63 (123)
T ss_dssp CCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTCHH
T ss_pred cCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCch
Confidence 3467888889999999999999999988877543 22 24455567788864
No 24
>d1neka1 a.7.3.1 (A:451-588) Succinate dehydogenase {Escherichia coli [TaxId: 562]}
Probab=27.82 E-value=24 Score=29.47 Aligned_cols=18 Identities=11% Similarity=0.196 Sum_probs=7.9
Q ss_pred hHHHHHHHHHHHHHHHHh
Q psy13798 39 STELYQTMRRVHDAVVSV 56 (614)
Q Consensus 39 pqdL~~~m~klhetfVal 56 (614)
|.+|...||++=+.-|.+
T Consensus 6 p~~l~~~Lq~~M~~~~Gi 23 (138)
T d1neka1 6 PVAIRKALQECMQHNFSV 23 (138)
T ss_dssp HHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHHhCCCE
Confidence 344444444444444443
No 25
>d1st6a6 a.24.9.1 (A:647-718) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=27.60 E-value=9.8 Score=29.86 Aligned_cols=30 Identities=17% Similarity=0.228 Sum_probs=24.1
Q ss_pred HHhhhccchhhHHHHHHHHHHhhhhhhhhc
Q psy13798 54 VSVAGSLQSTQPEVQYLKERHLQLRQTYLK 83 (614)
Q Consensus 54 ValAg~lq~~H~~V~~~KeqyL~~Rr~~l~ 83 (614)
|.-|+|+-..|..=|.-||++-+||+.|.+
T Consensus 29 Vi~AariL~~~P~sK~a~En~e~~~~~W~~ 58 (72)
T d1st6a6 29 VVSAARILLRNPGNQAAYEHFETMKNQWID 58 (72)
T ss_dssp HHHHHHHTTTSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHH
Confidence 567889988888888888888888887653
No 26
>d2c1xa1 c.87.1.10 (A:7-456) UDP glucose:flavonoid 3-o-glucosyltransferase {Grape (Vitis vinifera) [TaxId: 29760]}
Probab=26.86 E-value=25 Score=31.50 Aligned_cols=55 Identities=5% Similarity=0.056 Sum_probs=35.5
Q ss_pred ecCCChHHHHHHHHHH--HHHHHHhhhccchhhHHHHH-HH-----HHHhhhhhhhhcCCCcc
Q psy13798 34 FKSPLSTELYQTMRRV--HDAVVSVAGSLQSTQPEVQY-LK-----ERHLQLRQTYLKDSTNV 88 (614)
Q Consensus 34 ~~~~~pqdL~~~m~kl--hetfValAg~lq~~H~~V~~-~K-----eqyL~~Rr~~l~D~tdv 88 (614)
.....+++|..+++|| .|++-..+.|+.++.+.++. +| ..++.+.=.|+.-.-||
T Consensus 388 ~~~~t~~~l~~ai~~vL~d~~y~~~~~r~~~l~~~~~~a~~~~gss~~~~~~~~e~v~r~~~~ 450 (450)
T d2c1xa1 388 GGVFTKSGLMSCFDQILSQEKGKKLRENLRALRETADRAVGPKGSSTENFITLVDLVSKPKDV 450 (450)
T ss_dssp GGSCCHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHTSCCCC
T ss_pred CCCcCHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhhcCC
Confidence 4567899999999998 55666777777777766543 33 23444444455544444
No 27
>d1k78a1 a.4.1.5 (A:19-81) Pax-5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.33 E-value=30 Score=26.19 Aligned_cols=39 Identities=15% Similarity=0.196 Sum_probs=32.5
Q ss_pred CCChHHHHHHHHHHHH---HHHHhhhccchhhHHHHHHHHHH
Q psy13798 36 SPLSTELYQTMRRVHD---AVVSVAGSLQSTQPEVQYLKERH 74 (614)
Q Consensus 36 ~~~pqdL~~~m~klhe---tfValAg~lq~~H~~V~~~Keqy 74 (614)
.|||.||-+-|-+++| +-.++|.||.=-|.-|..+..+|
T Consensus 13 rPls~DLR~Riv~~~~~G~s~r~aA~rf~VS~s~v~k~l~r~ 54 (63)
T d1k78a1 13 RPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRY 54 (63)
T ss_dssp SCCCHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHHHH
Confidence 4999999998888886 46788999998888888777665
No 28
>d1s21a_ d.166.1.4 (A:) AvrPphF ORF2, a type III effector {Pseudomonas syringae pv. phaseolicola [TaxId: 319]}
Probab=26.22 E-value=11 Score=33.97 Aligned_cols=33 Identities=24% Similarity=0.292 Sum_probs=30.0
Q ss_pred ccchhhHHHHHHHHHHhh----hhhhhhcCCCccccc
Q psy13798 59 SLQSTQPEVQYLKERHLQ----LRQTYLKDSTNVFDV 91 (614)
Q Consensus 59 ~lq~~H~~V~~~KeqyL~----~Rr~~l~D~tdvFe~ 91 (614)
+|-+||+.--.+.|+||+ .|++-|+|.|-||-.
T Consensus 9 tltSV~qL~~~eR~~FL~~hDPmR~l~ln~dT~~yRt 45 (176)
T d1s21a_ 9 TLTSIHQLSSEERENFLDAHDPMRVYDLNSETSVYRT 45 (176)
T ss_dssp CCCBGGGSCHHHHHHHHHHHCHHHHTTCCTTCEEEEE
T ss_pred eeeeeccCCHHHHHHHHHccCchhhhCCCCCCeeeEe
Confidence 688999999999999998 699999999999973
No 29
>d2j0wa3 d.58.18.10 (A:386-449) Aspartokinase {Escherichia coli [TaxId: 562]}
Probab=25.22 E-value=16 Score=27.08 Aligned_cols=16 Identities=13% Similarity=0.366 Sum_probs=14.4
Q ss_pred hHHHHHHHHHHHHHHH
Q psy13798 39 STELYQTMRRVHDAVV 54 (614)
Q Consensus 39 pqdL~~~m~klhetfV 54 (614)
.+|++++++.|||.|+
T Consensus 48 ~~d~~~Av~aLh~~Ff 63 (64)
T d2j0wa3 48 GEDAEQVVQKLHSNLF 63 (64)
T ss_dssp GGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc
Confidence 4799999999999985
No 30
>d1xo3a_ d.15.3.3 (A:) C9orf74 homolog {Mouse (Mus musculus) [TaxId: 10090]}
Probab=25.06 E-value=16 Score=29.00 Aligned_cols=27 Identities=15% Similarity=0.252 Sum_probs=22.1
Q ss_pred hhhHHHHHHHHHHhhhhhhhhcCCCcc
Q psy13798 62 STQPEVQYLKERHLQLRQTYLKDSTNV 88 (614)
Q Consensus 62 ~~H~~V~~~KeqyL~~Rr~~l~D~tdv 88 (614)
.|-+.|+.++++|-.+|+++|.|.-+|
T Consensus 37 TV~dll~~L~~~~p~~~~~l~~~~~~l 63 (101)
T d1xo3a_ 37 DIRNLLVWIKKNLLKERPELFIQGDSV 63 (101)
T ss_dssp CHHHHHHHHHHHHCCSCGGGSCCTTSC
T ss_pred CHHHHHHHHHHhCCcchhhhhccCcCe
Confidence 466779999999999999998777443
No 31
>d1toaa_ c.92.2.2 (A:) Periplasmic zinc binding protein TroA {Treponema pallidum [TaxId: 160]}
Probab=24.68 E-value=27 Score=31.05 Aligned_cols=48 Identities=17% Similarity=0.310 Sum_probs=28.7
Q ss_pred eeEEEeecCCChHHHHHHHHHHHHHHHHh--------hhccchhhHHHHHHHHHHhhhh
Q psy13798 28 FYTHIWFKSPLSTELYQTMRRVHDAVVSV--------AGSLQSTQPEVQYLKERHLQLR 78 (614)
Q Consensus 28 ~~~~~~~~~~~pqdL~~~m~klhetfVal--------Ag~lq~~H~~V~~~KeqyL~~R 78 (614)
.=-|+|+. |.-....++.|.+.++.+ ..+++...++++.++++|...+
T Consensus 99 ~dPH~Wld---p~~~~~~a~~I~~~L~~~dP~~~~~y~~n~~~~~~~L~~l~~~~~~~~ 154 (277)
T d1toaa_ 99 FDPHVWFD---VKLWSYSVKAVYESLCKLLPGKTREFTQRYQAYQQQLDKLDAYVRRKA 154 (277)
T ss_dssp BCCCGGGS---HHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhC---chhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45699986 666666677777777644 3344555555555555544433
No 32
>d2p06a1 a.204.1.3 (A:1-84) Hypothetical protein AF0060 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=24.55 E-value=14 Score=29.06 Aligned_cols=31 Identities=23% Similarity=0.412 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHhhhccchhhHHHHHHHHHHhhhhhhhhc
Q psy13798 44 QTMRRVHDAVVSVAGSLQSTQPEVQYLKERHLQLRQTYLK 83 (614)
Q Consensus 44 ~~m~klhetfValAg~lq~~H~~V~~~KeqyL~~Rr~~l~ 83 (614)
+-+.||.|. +.++.|.|+ ||++-|||..+|.
T Consensus 39 rllsrlfee-------mdelreave--kedwenlrdelld 69 (84)
T d2p06a1 39 RLLSRLFEE-------MDELREAVE--KEDWENLRDELLD 69 (84)
T ss_dssp HHHHHHHHH-------HHHHHHHHH--TTCHHHHHHHHHH
T ss_pred HHHHHHHHH-------HHHHHHHHH--HHHHHHHHHHHHH
Confidence 445566653 455666665 8999999998873
No 33
>d1r5la2 c.13.1.1 (A:91-275) Alpha-tocopherol transfer protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.24 E-value=12 Score=31.59 Aligned_cols=30 Identities=13% Similarity=-0.068 Sum_probs=24.8
Q ss_pred hhhccchhhHHHHHHHHHHhhhhhhhhcCC
Q psy13798 56 VAGSLQSTQPEVQYLKERHLQLRQTYLKDS 85 (614)
Q Consensus 56 lAg~lq~~H~~V~~~KeqyL~~Rr~~l~D~ 85 (614)
+-|.+-.+.+..++.+|..+.||+|+++.+
T Consensus 155 ~GG~~~~~~~~~~~~~~~~~~~~d~~~~~~ 184 (185)
T d1r5la2 155 YGGEEFSMEDICQEWTNFIMKSEDYLSSIS 184 (185)
T ss_dssp GTCSSCCHHHHHHHHHHHHHHTHHHHHHTC
T ss_pred cCCCCCChHHHHHHHHHHHHHHHHHHHHhc
Confidence 566667788888889999999999998754
No 34
>d1f45b_ a.26.1.1 (B:) Heterodimeric interleukin-12 alpha chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.74 E-value=20 Score=32.40 Aligned_cols=30 Identities=17% Similarity=0.321 Sum_probs=24.0
Q ss_pred cchhhHHHHHHHHHHhhhhhhhhcCCC-ccc
Q psy13798 60 LQSTQPEVQYLKERHLQLRQTYLKDST-NVF 89 (614)
Q Consensus 60 lq~~H~~V~~~KeqyL~~Rr~~l~D~t-dvF 89 (614)
|++|-|.+|.+|+.|..|-+.+|+||- +|+
T Consensus 83 L~sIyEDLk~Y~~ef~ai~a~l~~~P~~qi~ 113 (178)
T d1f45b_ 83 LSSIYEDLKMYQVEFKTMNAKLLMDPKRQIF 113 (178)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSTTCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCchhhhh
Confidence 556666788999999999999999986 444
No 35
>d1hw1a2 a.78.1.1 (A:79-230) Fatty acid responsive transcription factor FadR, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=23.73 E-value=51 Score=26.26 Aligned_cols=48 Identities=6% Similarity=0.059 Sum_probs=34.0
Q ss_pred ChHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHhhhhhhhhcCCC
Q psy13798 38 LSTELYQTMRRVHDAVVSVAGSLQSTQPEVQYLKERHLQLRQTYLKDST 86 (614)
Q Consensus 38 ~pqdL~~~m~klhetfValAg~lq~~H~~V~~~KeqyL~~Rr~~l~D~t 86 (614)
-+.+....=.++|+.++..++.-. +-.-++.+++++..+|++++.++.
T Consensus 59 d~~~~~~~d~~FH~~l~~~sgN~~-l~~~~~~l~~~~~~~~~~~~~~~~ 106 (152)
T d1hw1a2 59 HADAFAELDYNIFRGLAFASGNPI-YGLILNGMKGLYTRIGRHYFANPE 106 (152)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHHHHHHHHTTSHH
T ss_pred hhhHhHHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHHHHHHhhhhhhhh
Confidence 356666666788988888877632 555667777778888888877654
No 36
>d1io1a_ e.32.1.1 (A:) Phase 1 flagellin {Salmonella typhimurium [TaxId: 90371]}
Probab=23.59 E-value=40 Score=29.08 Aligned_cols=38 Identities=24% Similarity=0.316 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHhh------hccchhhHHHHHHHHHHhhh
Q psy13798 40 TELYQTMRRVHDAVVSVA------GSLQSTQPEVQYLKERHLQL 77 (614)
Q Consensus 40 qdL~~~m~klhetfValA------g~lq~~H~~V~~~KeqyL~~ 77 (614)
+|+...|+||.|--|-=| ...+.|+.+|++|||+-.++
T Consensus 27 ~~~~~iL~r~reLavqaan~t~~~~dr~ai~~E~~~l~~ei~~i 70 (395)
T d1io1a_ 27 NEINNNLQRVRELAVQSANSTNSQSDLDSIQAEITQRLNEIDRV 70 (395)
T ss_dssp HHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 467777888888665444 34667888888888887765
No 37
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=23.19 E-value=47 Score=26.66 Aligned_cols=51 Identities=10% Similarity=0.182 Sum_probs=37.9
Q ss_pred ccccceeeEEEeecCCChHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHhhhhhh
Q psy13798 22 VWTGSRFYTHIWFKSPLSTELYQTMRRVHDAVVSVAGSLQSTQPEVQYLKERHLQLRQT 80 (614)
Q Consensus 22 ~~~~~~~~~~~~~~~~~pqdL~~~m~klhetfValAg~lq~~H~~V~~~KeqyL~~Rr~ 80 (614)
||-|+.||... ++..+++.|.+-.-.|=.++..+.++++.+++++..+.+.
T Consensus 74 V~lG~g~~vE~--------~~~eA~~~l~~ri~~l~~~~~~l~~~~~~~~~~i~~l~~~ 124 (133)
T d1fxkc_ 74 MSVGAGVAIKK--------NFEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQ 124 (133)
T ss_dssp EEEETTEEEEE--------EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecCCeeeee--------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777653 5667777777777777788888888888888888776654
No 38
>d1w36c1 c.37.1.19 (C:1-347) Exodeoxyribonuclease V gamma chain (RecC), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=23.15 E-value=7.2 Score=37.48 Aligned_cols=77 Identities=16% Similarity=0.234 Sum_probs=44.5
Q ss_pred ccccc-chhHHHHhhccccccceeeEEEeecCCChHHHHHHHHHHH--HHHHHhhhccch---------hhHHHHHHHHH
Q psy13798 6 PIRFH-HDKWLWKLCGSVWTGSRFYTHIWFKSPLSTELYQTMRRVH--DAVVSVAGSLQS---------TQPEVQYLKER 73 (614)
Q Consensus 6 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~pqdL~~~m~klh--etfValAg~lq~---------~H~~V~~~Keq 73 (614)
-|||. -.+++|++|..|--... ..-.|-|..|-=.|...+..+. +.|-.|+.-|+. +=++|..+=+|
T Consensus 59 ni~f~~p~~~i~~l~~~~l~~~~-~~~~~~~~~L~Wrl~~lL~~~~~~~~~~~l~~yL~~~~~~~r~~qLA~~iAdlFdq 137 (347)
T d1w36c1 59 NIDFPLPASFIWDMFVRVLPEIP-KESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSDKRKLFQLSSKAADLFDQ 137 (347)
T ss_dssp CCBCCCHHHHHHHHHHHHSSSCC-SSCTTCHHHHHHHHHHHHHHHCSSSTTHHHHHHTTSSCSSHHHHHHHHHHHHHHHH
T ss_pred eecCCCHHHHHHHHHHHhcCCCc-ccCCCchHhHHHHHHHHhHhhhcCcccHHHHHHHhcCccHHHHHHHHHHHHHHHHH
Confidence 36774 46799999987764322 1122333333333333333331 235556666652 44578888899
Q ss_pred Hhhhhhhhhc
Q psy13798 74 HLQLRQTYLK 83 (614)
Q Consensus 74 yL~~Rr~~l~ 83 (614)
|+.||-..|.
T Consensus 138 Y~~yRPdwl~ 147 (347)
T d1w36c1 138 YLVYRPDWLA 147 (347)
T ss_dssp HTTSSHHHHH
T ss_pred HHhcCHHHHH
Confidence 9999976664
No 39
>d2hs5a2 a.78.1.1 (A:94-231) Putative transcriptional regulator RHA1_ro03477 {Rhodococcus sp. RHA1 [TaxId: 101510]}
Probab=23.13 E-value=16 Score=28.65 Aligned_cols=69 Identities=17% Similarity=0.170 Sum_probs=42.6
Q ss_pred cchhHHHHhhccccccceeeEEEeecCCChHHHHHHHHHHHHHHH-HhhhccchhhHHHHHHHHHHhhhhhhhhc
Q psy13798 10 HHDKWLWKLCGSVWTGSRFYTHIWFKSPLSTELYQTMRRVHDAVV-SVAGSLQSTQPEVQYLKERHLQLRQTYLK 83 (614)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pqdL~~~m~klhetfV-alAg~lq~~H~~V~~~KeqyL~~Rr~~l~ 83 (614)
-+.++||++...+|.-.+.|.+.+... +.++...++ -|+.+| ||. -...-+.++.++++.-+-++.+|+
T Consensus 66 s~N~~l~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~-~H~~i~~ai~--~~d~~~A~~~~~~Hl~~~~~~~l~ 135 (138)
T d2hs5a2 66 NNSNRIDELMRSVWNEARLVFHVMDDA--HRFHGPYLT-RNHEIYDALA--AGNTEAAGQLLKTYLEDAEAQILG 135 (138)
T ss_dssp GCCHHHHHHHHHHHHHHHHHHHHHCCH--HHHHHHHHH-HHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHhcc--cchHHHHHH-HHHHHHHHHH--CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 366788888888888777766655442 444455443 454433 333 345556677777777777766653
No 40
>d1jt6a2 a.121.1.1 (A:73-187) Multidrug binding protein QacR {Staphylococcus aureus [TaxId: 1280]}
Probab=22.83 E-value=17 Score=29.72 Aligned_cols=44 Identities=11% Similarity=0.148 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHhhhhhhhhcC
Q psy13798 41 ELYQTMRRVHDAVVSVAGSLQSTQPEVQYLKERHLQLRQTYLKD 84 (614)
Q Consensus 41 dL~~~m~klhetfValAg~lq~~H~~V~~~KeqyL~~Rr~~l~D 84 (614)
|+..=|.|.-+-|+.-+-+-.++.++|+.+..+|+.+=|.+|+|
T Consensus 18 ~~~~Pl~~a~~EF~~~~~~~~e~~~~i~~lr~~y~~~~~~Ii~e 61 (115)
T d1jt6a2 18 EYYYPLQNAIIEFYTEYYKTNSINEKMNKLENKYIDAYHVIFKE 61 (115)
T ss_dssp HHTCTTHHHHHHHHTTTTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333456666788888888999999999999999988888875
No 41
>d1ryia2 d.16.1.3 (A:219-306) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}
Probab=21.91 E-value=9.7 Score=28.74 Aligned_cols=49 Identities=14% Similarity=0.345 Sum_probs=39.3
Q ss_pred ccchhHHH-HhhccccccceeeEEEeecCCChHHHHHHHHHHHHHHHHhh
Q psy13798 9 FHHDKWLW-KLCGSVWTGSRFYTHIWFKSPLSTELYQTMRRVHDAVVSVA 57 (614)
Q Consensus 9 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~pqdL~~~m~klhetfValA 57 (614)
++++.++- +..+.+|.|+.+..+-|=+.+.++++..-|+++++-|=.|+
T Consensus 23 ~~~~~yiip~~~g~~~iG~T~e~~~~d~~~~~~~~~~l~~~a~~~~P~l~ 72 (88)
T d1ryia2 23 YHDHCYIVPRKSGRLVVGATMKPGDWSETPDLGGLESVMKKAKTMLPAIQ 72 (88)
T ss_dssp EETTEEEEECTTSEEEEECCCEETCCCCSCCHHHHHHHHHHHHHHCGGGG
T ss_pred eCCCEEEEECCCCCEEEccEEEECCCCCCCCHHHHHHHHHHHHHHCCCcC
Confidence 45555555 45678999999998899999999999999999988775554
No 42
>d1z54a1 d.38.1.1 (A:1-132) Probable thioesterase TTHA0908 {Thermus thermophilus [TaxId: 274]}
Probab=21.74 E-value=12 Score=29.50 Aligned_cols=23 Identities=13% Similarity=0.356 Sum_probs=18.9
Q ss_pred eEEEeec----CCChHHHHHHHHHHHH
Q psy13798 29 YTHIWFK----SPLSTELYQTMRRVHD 51 (614)
Q Consensus 29 ~~~~~~~----~~~pqdL~~~m~klhe 51 (614)
.+|+.++ .|+|+||..+|.+||+
T Consensus 105 ~~~v~~~~~k~~~iP~~~~~~l~~l~~ 131 (132)
T d1z54a1 105 TRHLCQVGERAARIPEDIYRALSVLHL 131 (132)
T ss_dssp EEEECEESSSBCCCCHHHHHHHHHHSC
T ss_pred EEEEEccCCCCccCCHHHHHHHHHHhc
Confidence 4677665 4789999999999996
No 43
>d2nw8a1 a.266.1.1 (A:23-284) Tryptophan 2,3-dioxygenase {Xanthomonas campestris pv. campestris [TaxId: 340]}
Probab=20.87 E-value=12 Score=33.83 Aligned_cols=72 Identities=15% Similarity=0.226 Sum_probs=37.5
Q ss_pred CCCccc--ccchhHHHHhhccccccceeeEEEeecCCChHHHHHHHHHHHHHHHHh----hhccchhhHHHHHH------
Q psy13798 3 VNSPIR--FHHDKWLWKLCGSVWTGSRFYTHIWFKSPLSTELYQTMRRVHDAVVSV----AGSLQSTQPEVQYL------ 70 (614)
Q Consensus 3 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pqdL~~~m~klhetfVal----Ag~lq~~H~~V~~~------ 70 (614)
.-.|+- -|||.-++-++--+- -+|||--+ .||..++..+.+.=+.. -.|+..|.+.+..+
T Consensus 14 lQ~p~t~~~~~DE~~FIvvHQ~~-------EL~fk~il-~el~~~~~~~~~~~~~~a~~~l~R~~~~~~~l~~~~~vlet 85 (262)
T d2nw8a1 14 AQQPLSEPAHHDEMLFIIQHQTS-------ELWLKLLA-HELRAAIVHLQRDEVWQCRKVLARSKQVLRQLTEQWSVLET 85 (262)
T ss_dssp CCCCCCSSCCTTHHHHHHHHHHH-------HHHHHHHH-HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTHHHHTT
T ss_pred CCCCCCCCCCCCcceehHHHHHH-------HHHHHHHH-HHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334544 467776666654442 35777533 56776666665432222 22333333322222
Q ss_pred --HHHHhhhhhhhh
Q psy13798 71 --KERHLQLRQTYL 82 (614)
Q Consensus 71 --KeqyL~~Rr~~l 82 (614)
.++||.+|.++.
T Consensus 86 Mtp~~F~~FR~~L~ 99 (262)
T d2nw8a1 86 LTPSEYMGFRDVLG 99 (262)
T ss_dssp CCHHHHTTTGGGSC
T ss_pred CCHHHHHHHHHHhc
Confidence 368888887763
No 44
>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.86 E-value=17 Score=26.61 Aligned_cols=42 Identities=12% Similarity=0.235 Sum_probs=27.9
Q ss_pred ChHHHHH---HHHHHHHHHHHhhhccchhhHHHHHHHHHHhhhhhhh
Q psy13798 38 LSTELYQ---TMRRVHDAVVSVAGSLQSTQPEVQYLKERHLQLRQTY 81 (614)
Q Consensus 38 ~pqdL~~---~m~klhetfValAg~lq~~H~~V~~~KeqyL~~Rr~~ 81 (614)
+++|..+ ++++.-.-|..+|.-|. ...++..|++|.+|+|.+
T Consensus 9 T~eE~~~f~~~~~~~G~~w~~Ia~~~~--~kt~~q~~~~y~~~~k~~ 53 (65)
T d2iw5b1 9 TTEEQLLAVQAIRKYGRDFQAISDVIG--NKSVVQVKNFFVNYRRRF 53 (65)
T ss_dssp CHHHHHHHHHHHHHHSSCHHHHHHHHS--SCCHHHHHHHHHHTTTTT
T ss_pred CHHHHHHHHHHHHHhCchHHHHHHHcC--CCCHHHHHHHHHHHHhhc
Confidence 3555444 44444445777776654 467789999999988764
No 45
>d1nrla_ a.123.1.1 (A:) Pregnane x receptor, PXR {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.71 E-value=25 Score=31.97 Aligned_cols=22 Identities=18% Similarity=0.288 Sum_probs=15.4
Q ss_pred cchhhHHHHHHHHHHhhhhhhhh
Q psy13798 60 LQSTQPEVQYLKERHLQLRQTYL 82 (614)
Q Consensus 60 lq~~H~~V~~~KeqyL~~Rr~~l 82 (614)
|++ +++|+.+.|+|+.-=+.|+
T Consensus 215 L~~-~~~Ve~lq~~~~~aL~~y~ 236 (292)
T d1nrla_ 215 VLQ-HRVVDQLQEQFAITLKSYI 236 (292)
T ss_dssp CSC-HHHHHHHHHHHHHHHHHHH
T ss_pred ccc-HHHHHHHHHHHHHHHHHHH
Confidence 554 5779999998887555554
No 46
>d1pn3a_ c.87.1.5 (A:) TDP-epi-vancosaminyltransferase GtfA {Amycolatopsis orientalis [TaxId: 31958]}
Probab=20.42 E-value=70 Score=27.50 Aligned_cols=45 Identities=13% Similarity=0.148 Sum_probs=26.5
Q ss_pred cCCChHHHHHHHHHHH-----HHHHHhhhccch-hhHHHHHHHHHHhhhhh
Q psy13798 35 KSPLSTELYQTMRRVH-----DAVVSVAGSLQS-TQPEVQYLKERHLQLRQ 79 (614)
Q Consensus 35 ~~~~pqdL~~~m~klh-----etfValAg~lq~-~H~~V~~~KeqyL~~Rr 79 (614)
+...++||..+|++|. |....||.++++ =-++.-..-|++|..||
T Consensus 341 ~~~~~~~l~~~i~~~l~~~~r~~a~~~a~~~~~~g~~~aa~~i~~~l~~~~ 391 (391)
T d1pn3a_ 341 PVPTIDSLSAALDTALAPEIRARATTVADTIRADGTTVAAQLLFDAVSLEK 391 (391)
T ss_dssp SSCCHHHHHHHHHHHTSTTHHHHHHHHGGGSCSCHHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcC
Confidence 4456899999999873 444556666654 12223334455555554
No 47
>d2oyoa1 a.152.1.3 (A:10-195) Uncharacterized protein Dgeo_1446 {Deinococcus geothermalis [TaxId: 68909]}
Probab=20.06 E-value=34 Score=28.84 Aligned_cols=54 Identities=11% Similarity=0.020 Sum_probs=35.6
Q ss_pred ecCCChHHHHHHHHHHHHHHHHhhhcc---chhhHHHHHHHHHHhhhhhhhhcCCCc
Q psy13798 34 FKSPLSTELYQTMRRVHDAVVSVAGSL---QSTQPEVQYLKERHLQLRQTYLKDSTN 87 (614)
Q Consensus 34 ~~~~~pqdL~~~m~klhetfValAg~l---q~~H~~V~~~KeqyL~~Rr~~l~D~td 87 (614)
++-|.+.|+...+|+|+|.+...-|++ ..++...-.+=+.|+++.+.++++...
T Consensus 6 lp~~~~~~~~~~~~~~~~~~~~~~G~vpn~~~~la~~P~~l~~~~~~~~~l~~~~~~ 62 (186)
T d2oyoa1 6 LPVPDATQVPEGVRKLWAKAEANIGFVPNVFRAQAVNGEQFLAWWNYFNLLLNKEGY 62 (186)
T ss_dssp SCCCCGGGSCHHHHHHHHHHHHHHSSCCTHHHHGGGSHHHHHHHHHHHHHHHTSCCS
T ss_pred CCCCCchhCCHHHHHHHHHHHHHcCCCHHHHHHHHcCHHHHHHHHHHHHHHHhcccC
Confidence 455566777777888888777766654 333444444555689998888876543
Done!