RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13798
(614 letters)
>gnl|CDD|183756 PRK12799, motB, flagellar motor protein MotB; Reviewed.
Length = 421
Score = 41.2 bits (96), Expect = 0.001
Identities = 25/114 (21%), Positives = 39/114 (34%), Gaps = 4/114 (3%)
Query: 486 GAPATTAQTGFSFGTPAATSQPSVGFGAAATTQSVGFGAPATSQSVTFGAQPASQPSVGF 545
G A T S T ++ PS +AA + T+QS T A S
Sbjct: 297 GTVPVAAVTPSSAVTQSSAITPS----SAAIPSPAVIPSSVTTQSATTTQASAVALSSAG 352
Query: 546 GAPATTQTGLSFGAPATSQPALSFGSSATGQAAGFSFGSSAPASSQPSLSFGAA 599
P+ + PA + +T + S G+ ++ P+ S AA
Sbjct: 353 VLPSDVTLPGTVALPAAEPVNMQPQPMSTTETQQSSTGNITSTANGPTTSLPAA 406
Score = 33.2 bits (75), Expect = 0.39
Identities = 23/119 (19%), Positives = 35/119 (29%), Gaps = 10/119 (8%)
Query: 448 GTPSATQASGGFSFGGGTAPQTGGLNFGTPTSTQQPLFGAPATTAQTGFSFGTPAATSQP 507
GT + + +A +P + ATT Q +A +
Sbjct: 297 GTVPVAAVTPSSAVTQSSAITPSSAAIPSPAVIPSSVTTQSATTTQA-------SAVALS 349
Query: 508 SVGFGAAATTQSVGFGAPATSQSVTFGAQPASQPSVGFGAPATTQTGLSFGAPATSQPA 566
S G + T PA + V QP S + + + P TS PA
Sbjct: 350 SAGVLPSDVTLPGTVALPAA-EPVNMQPQPMSTTETQQSSTGNITSTAN--GPTTSLPA 405
Score = 32.4 bits (73), Expect = 0.80
Identities = 15/98 (15%), Positives = 29/98 (29%), Gaps = 1/98 (1%)
Query: 512 GAAATTQSVGFGAPATSQSVTFGAQPASQPSVGFGAPATTQTGLSFGAPATSQPALSFGS 571
G A S ++T + A + TTQ+ + A A + +
Sbjct: 297 GTVPVAAVTPSSAVTQSSAIT-PSSAAIPSPAVIPSSVTTQSATTTQASAVALSSAGVLP 355
Query: 572 SATGQAAGFSFGSSAPASSQPSLSFGAAIWIFSNRSSS 609
S + ++ P + QP S + +
Sbjct: 356 SDVTLPGTVALPAAEPVNMQPQPMSTTETQQSSTGNIT 393
>gnl|CDD|240430 PTZ00473, PTZ00473, Plasmodium Vir superfamily; Provisional.
Length = 420
Score = 39.1 bits (91), Expect = 0.006
Identities = 30/107 (28%), Positives = 42/107 (39%), Gaps = 18/107 (16%)
Query: 210 GFSFGSTATQPAFGAGTTTSGQGFGGFGTGTATFGSTNTSTGGLFGSGGTTTAQPGFGSS 269
G T + + T S +GG GT+ ST+T +GS T F SS
Sbjct: 327 NSRSGRTGSSESIRGFTYDSSTTYGGSSYGTSQTDSTST-----YGSRST------FDSS 375
Query: 270 AFGTPSAPTPAFGSPAFGSTNTFGTPTTQQSTGFGGFGTSTFGSQPT 316
G + + G +G ++TF + S FG S FG Q T
Sbjct: 376 TGGG----SQSGGGSTYGGSSTFDGSSRGSSDSFGV---SYFGPQQT 415
Score = 35.2 bits (81), Expect = 0.11
Identities = 23/113 (20%), Positives = 35/113 (30%), Gaps = 13/113 (11%)
Query: 263 QPGFGSSAFGTPSAPTPAFGSPAFGSTNTFGTPTTQQSTGFGGF--------GTSTFGSQ 314
+ S GS+ + T ST +GG TST+GS
Sbjct: 310 MGHDSRGPYNANYGGQFNSRSGRTGSSESIRGFTYDSSTTYGGSSYGTSQTDSTSTYGS- 368
Query: 315 PTQQSGLSFNSPSTTQSGLTFGAPSGGLNFGTPTTQATSAFGTPTQSTGLSFG 367
S S + G T+G S F + ++ +FG + G
Sbjct: 369 -RSTFDSSTGGGSQSGGGSTYGGSST---FDGSSRGSSDSFGVSYFGPQQTVG 417
Score = 33.3 bits (76), Expect = 0.34
Identities = 25/109 (22%), Positives = 40/109 (36%), Gaps = 6/109 (5%)
Query: 230 GQGFGGFGTGTATFGSTNTSTGGLFGSGGTTTA-QPGFGSSAFGTPSA-PTPAFGSPAFG 287
F S + TG G T +G S++GT T +GS +
Sbjct: 313 DSRGPYNANYGGQFNSRSGRTGSSESIRGFTYDSSTTYGGSSYGTSQTDSTSTYGSRSTF 372
Query: 288 STNTFGTPTTQQSTGFGGFGTSTFGSQPTQQSGLSFNSPS-TTQSGLTF 335
++T G + + +G G+STF ++ S SF Q + F
Sbjct: 373 DSSTGGGSQSGGGSTYG--GSSTFDG-SSRGSSDSFGVSYFGPQQTVGF 418
Score = 31.7 bits (72), Expect = 1.2
Identities = 23/86 (26%), Positives = 34/86 (39%), Gaps = 13/86 (15%)
Query: 103 DVEGPSPFSAGFSFGSTATQPAFGAGT-----TTSGQGFGG---FGSATARLCNSIGSPA 154
G S GF++ S+ T +G + T S +G F S+T S G
Sbjct: 331 GRTGSSESIRGFTYDSSTT---YGGSSYGTSQTDSTSTYGSRSTFDSSTGGGSQSGGGST 387
Query: 155 FGSTNTFGTPTTQQSTGFGG--FGTS 178
+G ++TF + S FG FG
Sbjct: 388 YGGSSTFDGSSRGSSDSFGVSYFGPQ 413
Score = 30.2 bits (68), Expect = 3.6
Identities = 26/108 (24%), Positives = 35/108 (32%), Gaps = 4/108 (3%)
Query: 336 GAPSGGLNFGTPTTQATSAFGTPTQSTGLSFGNFNSGLTFGAPSGG--LNFGTPTTQATS 393
G S G Q S G S + ++S T+G S G T T + S
Sbjct: 311 GHDSRGPYNANYGGQFNSRSGRTGSSESIRGFTYDSSTTYGGSSYGTSQTDSTSTYGSRS 370
Query: 394 AFGTPTQSTGLSFGPPFLFRSNETTATLDACVQSFGSTT--PAQGFGS 439
F + T S G S+ + SFG + P Q G
Sbjct: 371 TFDSSTGGGSQSGGGSTYGGSSTFDGSSRGSSDSFGVSYFGPQQTVGF 418
>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau;
Validated.
Length = 830
Score = 39.1 bits (91), Expect = 0.007
Identities = 27/130 (20%), Positives = 39/130 (30%), Gaps = 8/130 (6%)
Query: 466 APQTGGLNFGTPTSTQQPLFGAPATTAQTGFSFGTPAATSQPSVGFGAAATTQSVGFGAP 525
A GG G + AP A A + + GAA ++ A
Sbjct: 361 AVTGGGAPGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAA 420
Query: 526 ATSQSVTFGAQPASQPSVGFGA---PATTQTGLSFGAPATSQPALSFGSSATGQAAGFSF 582
+++ P + G A A + A A S+ Q S
Sbjct: 421 TRAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCD-----ERDAQPPADSG 475
Query: 583 GSSAPASSQP 592
+SAPAS P
Sbjct: 476 SASAPASDAP 485
Score = 36.8 bits (85), Expect = 0.034
Identities = 31/154 (20%), Positives = 45/154 (29%), Gaps = 6/154 (3%)
Query: 455 ASGGFSFGGGTAPQTGGLNFGTPTSTQQPLFGAPATTAQTGFSFGTPAATSQPSVGFGAA 514
A G GG P P + GA A A T + G A P AA
Sbjct: 361 AVTGGGAPGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVT-GAAGAALAPKAAAAAA 419
Query: 515 ATTQSVGFGAPATSQSVTFGAQPASQPSVGFGAPATTQTGLSFGAPATSQPALSFGSSAT 574
AT APA + G A + + S +QP + +
Sbjct: 420 ATRAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPP-----ADS 474
Query: 575 GQAAGFSFGSSAPASSQPSLSFGAAIWIFSNRSS 608
G A+ + + A+ +P+ A
Sbjct: 475 GSASAPASDAPPDAAFEPAPRAAAPSAATPAAVP 508
Score = 30.6 bits (69), Expect = 2.9
Identities = 29/167 (17%), Positives = 49/167 (29%), Gaps = 17/167 (10%)
Query: 433 PAQGFGSTAQTGLSFGTPSATQASG---GFSFGGGTAPQTGGLNFGTPTS-TQQPLFGAP 488
PA G G+ A A G + G P + + + A
Sbjct: 360 PAVTGGGAPGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAA 419
Query: 489 ATTAQTGFSFGTPAATS----QPSVGFGAAATTQSVGFGAPATSQSVTFGAQPASQPSVG 544
AT A+ + P AT+ + G + A A S+ AQP +
Sbjct: 420 ATRAEAPPAAPAPPATADRGDDAADGDAPVPAKANAR--ASADSRCDERDAQPPADSGSA 477
Query: 545 FGAPATTQTGLSFGAPATSQPALSFGSSATGQAAGFSFGSSAPASSQ 591
+ A +PA ++ + + APA++
Sbjct: 478 SAPASDAP------PDAAFEPAPR-AAAPSAATPAAVPDARAPAAAS 517
Score = 29.4 bits (66), Expect = 6.1
Identities = 24/113 (21%), Positives = 31/113 (27%), Gaps = 5/113 (4%)
Query: 487 APATTAQTGFSFGTPAATSQPSVGFGAAATTQSVGFGAPATSQSVTFGAQPASQPSVGFG 546
PA T G PA + +V A +VG A +VT A A P
Sbjct: 359 EPAVTGGGAPGGGVPARVAG-AVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAA 417
Query: 547 APATTQTGLSFGAPATSQPALSFGSSATGQAAGFSFGSSAPASSQPSLSFGAA 599
A AT PA P + + A A +
Sbjct: 418 AAATRAE----APPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDER 466
>gnl|CDD|218439 pfam05109, Herpes_BLLF1, Herpes virus major outer envelope
glycoprotein (BLLF1). This family consists of the BLLF1
viral late glycoprotein, also termed gp350/220. It is
the most abundantly expressed glycoprotein in the viral
envelope of the Herpesviruses and is the major antigen
responsible for stimulating the production of
neutralising antibodies in vivo.
Length = 830
Score = 37.1 bits (85), Expect = 0.028
Identities = 60/292 (20%), Positives = 86/292 (29%), Gaps = 18/292 (6%)
Query: 212 SFGSTATQPAFGAGTTTSGQGFGGFGTGTATFGSTNTSTGGLFGSGGTTTAQPGFGSSAF 271
S ++AT A + T + TS + TT P G+++
Sbjct: 490 SRTTSATPNATSPTPAVTTPNATSPTTQKTSDTPNATSPTPIVIGVTTTATSPPTGTTSV 549
Query: 272 GTPSAPTPAFGSPAFGSTNTFGTPTTQQSTGFGGFGTSTFGSQPT-QQSGLSFNSPSTTQ 330
++P SP + T T G GS PT QQ G+ +S ST +
Sbjct: 550 PNATSPQVTEESPVNNTNTPVVTSAPSVLTSAVTTGQHGTGSSPTSQQPGIPSSSHSTPR 609
Query: 331 SG-------LTFGAPSGGLNFGTPTTQA-------TSAFGTPTQSTGLSFGNFNSGLTFG 376
S LT P+GG N T T + G +T G NS +
Sbjct: 610 SNSTSTTPLLTSAHPTGGENITEETPSVPSTTHVSTLSPGPGPGTTSQVSGPGNSSTSRY 669
Query: 377 APSGGLNFGTPTTQATSAFGTPTQSTGLS--FGPPFLFRSNETTATLDACVQSFGSTTPA 434
+ G P ATS Q T + S + + S T
Sbjct: 670 PGEVHVTEGMPNPNATSPSAPSGQKTAVPTVTSTGGKANSTTKETSGSTLMASTSPHTNE 729
Query: 435 QGFGSTAQTGLSFGTPSATQASGGFSFGGGTAPQTGGLNFGTPTSTQQPLFG 486
F +T ++ PS + T P TQ P
Sbjct: 730 GAFRTTPYNATTYLPPSTSSKLRPRWTFTSPPVTTKQATVPVPP-TQHPDHS 780
Score = 35.9 bits (82), Expect = 0.065
Identities = 56/316 (17%), Positives = 87/316 (27%), Gaps = 18/316 (5%)
Query: 258 GTTTAQPGFGSSAFGTPSAPTPAFGSPAFGSTNTFGTPTTQQSTGFGGFGTSTFGSQPTQ 317
GT T +P++ T + A T TP T T S
Sbjct: 472 GTPTGTTSSTLPEDTSPTSRTTSATPNATSPTPAVTTPNATSPTTQKTSDTPNATSPTPI 531
Query: 318 QSGLSFNSPSTTQSGLTFGAPSGGLNFGTPTTQATSAFGTPTQSTGLSFGNFNSGLTFGA 377
G++ + S + + T+ + + L+ G+
Sbjct: 532 VIGVTTTATSPPTGTTSVPNATSPQVTEESPVNNTNTPVVTSAPSVLTSAVTTGQHGTGS 591
Query: 378 PSGGLNFGTPTTQATSAFGTPTQSTGLSFGPPFLFRSNETTATLDACVQSFGST-TPAQG 436
G P++ ++ T +T L N T T + ST +P G
Sbjct: 592 SPTSQQPGIPSSSHSTPRSNSTSTTPLLTSAHPTGGENITEETPSVPSTTHVSTLSPGPG 651
Query: 437 FGSTAQTGLSFGTPSATQASGGFSFGGGTAPQ-------TGGLNFGTPTSTQQPLFGAPA 489
G+T+Q G S ++ G G G PT T
Sbjct: 652 PGTTSQVS-GPGNSSTSRYPGEVHVTEGMPNPNATSPSAPSGQKTAVPTVTSTGGKANST 710
Query: 490 TTAQTGFSFGTPAATSQPSVGFGAAATTQSVGFGAPATSQSVTFGAQPASQPSVGFGAPA 549
T +G + + P GA TT S S +P F +P
Sbjct: 711 TKETSGSTLMAS---TSPHTNEGAFRTTPYNATTYLPPSTSSKL------RPRWTFTSPP 761
Query: 550 TTQTGLSFGAPATSQP 565
T + P T P
Sbjct: 762 VTTKQATVPVPPTQHP 777
>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau;
Validated.
Length = 824
Score = 36.1 bits (84), Expect = 0.064
Identities = 28/121 (23%), Positives = 37/121 (30%), Gaps = 6/121 (4%)
Query: 446 SFGTPSATQASGGFSFGGGTAPQTGGLNFGTPTSTQQPLFGAPATTAQTGFSFGTPAATS 505
+ PSA A+ + A + Q APA G A
Sbjct: 395 AAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPA--PAPAPAPAPPSPAGNAPAGG 452
Query: 506 QPSVGFGAAATTQSVGFGAPATSQSVTFGAQPASQPSVGFGAPATTQTGLSFGAPATSQP 565
PS AA + Q APA + + A PA P A + APA +
Sbjct: 453 APSPPPAAAPSAQP----APAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGADD 508
Query: 566 A 566
A
Sbjct: 509 A 509
Score = 35.3 bits (82), Expect = 0.096
Identities = 27/151 (17%), Positives = 40/151 (26%), Gaps = 3/151 (1%)
Query: 450 PSATQASGGFSFGGGTAPQTGGLNFGTPTSTQQPLFGAPATTAQTGFSFGTPAATSQPSV 509
PSA+ G + G+ G A A + AA +
Sbjct: 365 PSASDDERGLLARLERLERRLGVAGGAGAPAAAA---PSAAAAAPAAAPAPAAAAPAAAA 421
Query: 510 GFGAAATTQSVGFGAPATSQSVTFGAQPASQPSVGFGAPATTQTGLSFGAPATSQPALSF 569
AA Q APA + G PA A A + A A A
Sbjct: 422 APAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPA 481
Query: 570 GSSATGQAAGFSFGSSAPASSQPSLSFGAAI 600
+ A + + A ++ A +
Sbjct: 482 PAPPAAPAPAAAPAAPAAPAAPAGADDAATL 512
Score = 34.2 bits (79), Expect = 0.21
Identities = 31/164 (18%), Positives = 37/164 (22%), Gaps = 12/164 (7%)
Query: 429 GSTTPAQGFGSTAQTGLSFGTPSATQASGGFSFGGGTAPQTGGLNFGTPTSTQQPLFGAP 488
G A G S A + + + AP G + AP
Sbjct: 589 GPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAG---AAAAPAEASAAPAP 645
Query: 489 ATTAQTGFSFGTPAATSQPSVGFGAAATTQSVGFGAPATSQSVTFGAQPASQPSVGFGAP 548
A P + P G G APA A PA+ P
Sbjct: 646 GVAA----PEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQP 701
Query: 549 ATTQTGLSFGAPATSQPALSFGSSATGQAAGFSFGSSAPASSQP 592
A A A A G S S A P
Sbjct: 702 APAPAATPPAGQADDPAA-----QPPQAAQGASAPSPAADDPVP 740
Score = 31.5 bits (72), Expect = 1.8
Identities = 16/109 (14%), Positives = 28/109 (25%), Gaps = 1/109 (0%)
Query: 486 GAPATTAQTGFSFGTPAATSQPSVGFGAAATTQSVGFGAPATSQSVTFGAQPASQPSVGF 545
A S G P ++P+ AA GA A + P
Sbjct: 594 AAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHH 653
Query: 546 GAPATTQTGLSFGAPATSQPALSFGSS-ATGQAAGFSFGSSAPASSQPS 593
G ++ + ++ A + A +QP+
Sbjct: 654 PKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPA 702
Score = 30.3 bits (69), Expect = 4.0
Identities = 23/147 (15%), Positives = 36/147 (24%), Gaps = 3/147 (2%)
Query: 449 TPSATQASGGFSFGGGTAPQTGGLNFGTPTSTQQPLFGAPATTAQTGFSFGTPAATSQPS 508
A A S + G G + P P+
Sbjct: 629 PAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPA 688
Query: 509 VGFGAAATTQSVGFGAPATSQSVTFGAQPASQPSVGFGAPATTQTGLSFGAPATSQPALS 568
A + APA + PA+QP + P +P
Sbjct: 689 APAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDP 748
Query: 569 ---FGSSATGQAAGFSFGSSAPASSQP 592
G+ A ++APA++ P
Sbjct: 749 PDPAGAPAQPPPPPAPAPAAAPAAAPP 775
>gnl|CDD|240415 PTZ00429, PTZ00429, beta-adaptin; Provisional.
Length = 746
Score = 35.3 bits (81), Expect = 0.093
Identities = 47/210 (22%), Positives = 64/210 (30%), Gaps = 68/210 (32%)
Query: 391 ATSAFGTPTQSTGLSFGPPFLFR----SNETTATLDACVQSFGSTTPAQGFGSTAQTGLS 446
A F P QS F PP+ E T DA ST G
Sbjct: 586 AAIVFARPYQS----FLPPYGLADVELDEEDTEDDDAVELP-----------STPSMGTQ 630
Query: 447 FGTPSATQASGGFSFGGGTAPQTGGLNFGTPTSTQQPLFGAPATTAQTGFSFGTPAATSQ 506
G+P+ + A G+ TG AP A G+ A
Sbjct: 631 DGSPAPSAAPAGYDIFEFAGDGTG----------------APHPVAS-----GSNGAQHA 669
Query: 507 PSVG--FGAAATTQSVGFGAPATSQSVTFGAQPASQPSVGFGAPATTQTGLSFGAPATSQ 564
+G F G P+T + PA Q + G APA+ P T+
Sbjct: 670 DPLGDLFS----------GLPST----VGASSPAFQAASGSQAPAS---------PPTAA 706
Query: 565 PALS--FGSS-ATGQAAGFSFGSSAPASSQ 591
A+ F + +G S+AP S+
Sbjct: 707 SAIEDLFANGMGSGSQTVPLPISAAPQSAD 736
>gnl|CDD|215130 PLN02217, PLN02217, probable pectinesterase/pectinesterase
inhibitor.
Length = 670
Score = 33.9 bits (77), Expect = 0.31
Identities = 29/105 (27%), Positives = 45/105 (42%), Gaps = 12/105 (11%)
Query: 510 GFGAAATTQSVGFGAPA----TSQSVTFGAQPASQPSVGF--GAPATTQTGLSFGAPATS 563
G + + G A + +S S + P++ P G PAT +S P+TS
Sbjct: 564 GNPGSTNSTPTGSAASSNTTFSSDSPSTVVAPSTSPPAGHLGSPPATPSKIVS---PSTS 620
Query: 564 QPALSFGSSATGQAAGFSFGSSAPASSQPSLSFGAAIWIFSNRSS 608
PA GS +T + S SS +S + S ++I + S SS
Sbjct: 621 PPASHLGSPSTTPS---SPESSIKVASTETASPESSIKVASTESS 662
Score = 29.3 bits (65), Expect = 7.3
Identities = 28/110 (25%), Positives = 40/110 (36%), Gaps = 8/110 (7%)
Query: 463 GGTAPQTGGLNFGTPTSTQQPLFGAPATTAQTGFSFGTPAATSQPSVGFGAAATTQSVGF 522
G P GL G P ST G+ A ++ T FS +P+ PS T+ G
Sbjct: 552 GKGVPYIPGLFAGNPGSTNSTPTGS-AASSNTTFSSDSPSTVVAPS-------TSPPAGH 603
Query: 523 GAPATSQSVTFGAQPASQPSVGFGAPATTQTGLSFGAPATSQPALSFGSS 572
+ + S P+ G+P+TT + S S SS
Sbjct: 604 LGSPPATPSKIVSPSTSPPASHLGSPSTTPSSPESSIKVASTETASPESS 653
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional.
Length = 3151
Score = 32.6 bits (74), Expect = 0.85
Identities = 31/156 (19%), Positives = 46/156 (29%), Gaps = 14/156 (8%)
Query: 449 TPSATQASGGFSFGGGTAP-----QTGGLNFGTPTSTQQPLF--GAPATTAQTGFSFGTP 501
P A+ S AP G G P +P G PA + G P
Sbjct: 2721 LPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPP 2780
Query: 502 AATSQPSVGFGAAATTQSVGFGAPATSQSVTFGAQPA----SQPSVGFGAPATTQTGLSF 557
++P+V + + PA + A + P+ P + Q
Sbjct: 2781 RRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPP 2840
Query: 558 GAPATSQPALSFGSSATGQAAGFSFGSSAPASSQPS 593
P P+L G S A G P+ S +
Sbjct: 2841 PPPGPPPPSLPLGGSV---APGGDVRRRPPSRSPAA 2873
Score = 29.5 bits (66), Expect = 6.8
Identities = 20/136 (14%), Positives = 30/136 (22%), Gaps = 2/136 (1%)
Query: 465 TAPQTGGLNFGTPTSTQQPLFGAPATTAQTGFSFGTPAATSQPSVGFGAAATTQSVGFGA 524
P P P A T PA + A
Sbjct: 2723 PGPAAARQAS--PALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPP 2780
Query: 525 PATSQSVTFGAQPASQPSVGFGAPATTQTGLSFGAPATSQPALSFGSSATGQAAGFSFGS 584
++ + + PA + A A A G +A +
Sbjct: 2781 RRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPP 2840
Query: 585 SAPASSQPSLSFGAAI 600
P PSL G ++
Sbjct: 2841 PPPGPPPPSLPLGGSV 2856
Score = 29.5 bits (66), Expect = 8.0
Identities = 24/118 (20%), Positives = 39/118 (33%), Gaps = 5/118 (4%)
Query: 477 PTSTQQPLFGAPATTAQTGFSFGTPAATSQPSVGFGAAATTQSVGFGAPATSQSVTFGAQ 536
P + P A S PAA + P+V G A P T T G
Sbjct: 2712 PHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPT----TAGPP 2767
Query: 537 PASQPSVGFGAPATTQTGLSFGAPATSQPALSFGSSATGQAAGFSFGSSA-PASSQPS 593
+ P+ P T + + + S+ +L A ++A P ++ P+
Sbjct: 2768 APAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPA 2825
>gnl|CDD|237653 PRK14276, PRK14276, chaperone protein DnaJ; Provisional.
Length = 380
Score = 31.2 bits (71), Expect = 1.7
Identities = 16/46 (34%), Positives = 19/46 (41%), Gaps = 5/46 (10%)
Query: 213 FGSTATQPAFGAGTTTSGQGFGGFGTGTATFGSTNTSTGGLFGSGG 258
+G+ FG G GFGGF G+ FG FG GG
Sbjct: 68 YGAAGANGGFGGG----AGGFGGFD-GSGGFGGFEDIFSSFFGGGG 108
>gnl|CDD|219927 pfam08601, PAP1, Transcription factor PAP1. The transcription
factor Pap1 regulates antioxidant-gene transcription in
response to H2O2. This region is cysteine rich.
Alkylation of cysteine residues following treatment with
a cysteine alkylating agent can mask the accessibility
of the nuclear exporter Crm1, triggering nuclear
accumulation and Pap1 dependent transcriptional
expression.
Length = 344
Score = 30.7 bits (69), Expect = 2.3
Identities = 23/154 (14%), Positives = 43/154 (27%), Gaps = 11/154 (7%)
Query: 245 STNTSTGGLFGSGGTTTAQPGFGSSAFGTPSAPTPAFGSPAFGSTNTFGTPTTQQSTGFG 304
S ++ GL S + + P P+ T + +N + ++
Sbjct: 52 SVSSPVPGLLNSTESNVSSPN------NNPNGYTSPSSAAMNNKSNNRAVDPSANASAAS 105
Query: 305 GFGTSTFGSQPTQQS---GLSFNSPSTTQSGLTFGAPSGGLNFGTPTTQATSAFGTPTQS 361
+ S TQ + S +SPS+ G F +P S + +
Sbjct: 106 TNSPNGLQSSATQYNSNDNSSSDSPSSGSDG--FTNQLLSSLGTSPEPSTESPPQLASVN 163
Query: 362 TGLSFGNFNSGLTFGAPSGGLNFGTPTTQATSAF 395
+ N + + P AF
Sbjct: 164 NFAAIRNNAESNSNVPSAASSTPNIPGIDFLLAF 197
>gnl|CDD|224346 COG1429, CobN, Cobalamin biosynthesis protein CobN and related
Mg-chelatases [Coenzyme metabolism].
Length = 1388
Score = 30.8 bits (70), Expect = 2.8
Identities = 19/83 (22%), Positives = 27/83 (32%), Gaps = 3/83 (3%)
Query: 512 GAAATTQSVGFGAPATSQSVTFGAQ-PASQPSVGFGAPATTQTGLSFGAPATSQPALSFG 570
AAT + A AT + S S A T S + P+L
Sbjct: 1283 TYAATRYAAFAPASATPGAPESVGTTAVSTASSASSATVTGSDAGSGADS--TGPSLGAA 1340
Query: 571 SSATGQAAGFSFGSSAPASSQPS 593
S TG G+ A + S+ +
Sbjct: 1341 GSVTGAGEGYEMTKEAVSGSEST 1363
>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 700
Score = 30.2 bits (68), Expect = 3.4
Identities = 32/136 (23%), Positives = 45/136 (33%), Gaps = 2/136 (1%)
Query: 467 PQTGGLNFGTPTSTQQPLFG-APATTAQTGFSFGTPAATSQPSVGFGAAATTQSVGFGAP 525
P G G T+ P+ APA A + A + P+ AAA ++V AP
Sbjct: 365 PGQSGGGAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVA-AAP 423
Query: 526 ATSQSVTFGAQPASQPSVGFGAPATTQTGLSFGAPATSQPALSFGSSATGQAAGFSFGSS 585
A A Q S A APA + + G AA + +
Sbjct: 424 ARRSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARA 483
Query: 586 APASSQPSLSFGAAIW 601
APA++ W
Sbjct: 484 APAAAPAPADDDPPPW 499
>gnl|CDD|185594 PTZ00395, PTZ00395, Sec24-related protein; Provisional.
Length = 1560
Score = 30.4 bits (68), Expect = 4.1
Identities = 52/259 (20%), Positives = 82/259 (31%), Gaps = 46/259 (17%)
Query: 214 GSTATQPAFGAGTTTSGQGFGGFGTGT---ATFGSTNTSTGGLFGSGGTTTAQPGFGSSA 270
G+ + +F G + Q +GGF G+ A+ G+ G G P +
Sbjct: 320 GAPNDKNSFDRGNEKTYQIYGGFHDGSPNAASAGAPFNGLGNQADGGHINQVHPDARGAW 379
Query: 271 FGTPSAPTPAFGSPAF---GSTNTFGTPTTQQSTGFGGFGTSTFGSQPTQQSGLSFNSPS 327
G P + ++ A+ +N + + G+ G S G S +N+P
Sbjct: 380 AGGPHS-NASYNCAAYSNAAQSNAAQSNAGFSNAGYSNPGNSNPGYNNAPNSNTPYNNP- 437
Query: 328 TTQSGLTFGAPSGGLNFGTPTTQATSAFGTPTQSTGLSFGNFNSGLTFGAPSGGLNFGTP 387
P+ + P P +T S N+ L+ PS
Sbjct: 438 ----------PNSNTPYSNPPNSNPPYSNLPYSNTPYS----NAPLSNAPPSSA------ 477
Query: 388 TTQATSAFGTPTQSTGLSFGPPFLFRSNETTATLDACVQSFGSTTPAQGFGSTAQTGLSF 447
SA+ Q +N+ A L Q A F A G S
Sbjct: 478 -KDHHSAYHAAYQHRA----------ANQPAANLPTANQP-----AANNFHGAA--GNSV 519
Query: 448 GTPSATQASGGFSFGGGTA 466
G P A++ G +GG A
Sbjct: 520 GNPFASRPFGSAPYGGNAA 538
>gnl|CDD|227938 COG5651, COG5651, PPE-repeat proteins [Cell motility and
secretion].
Length = 490
Score = 29.9 bits (67), Expect = 4.1
Identities = 38/200 (19%), Positives = 47/200 (23%), Gaps = 5/200 (2%)
Query: 207 LWAGFSFGSTATQPAFGAGTTTSGQGFGGFGTGTATFGSTNTSTGGLFGSGGTTTAQPGF 266
A S + G G Q G G GS N GL T
Sbjct: 212 NPATLSGLANGGTGNLGIGALQQAQNLGFGNVGFGNLGSGNPGAPGLASQFSATNLGTLL 271
Query: 267 GSSAFGTPSAPTPAFGSPAFGSTNTFGTPTTQQSTGFGGFGTSTFGSQPTQQSGLSFNSP 326
GS + G A G+ N GG Q +Q + + +
Sbjct: 272 GSLNPYLGNIGATNIGLAAAGTGNIGSGNAVDS----GGSALVGAIGQTSQATANAGSVN 327
Query: 327 STTQSGLTFGAPS-GGLNFGTPTTQATSAFGTPTQSTGLSFGNFNSGLTFGAPSGGLNFG 385
+T + G A GNF G G GG G
Sbjct: 328 ATGGAAAGSGNLGVANSGSAAAPFGIAGANQAALGGANSGAGNFGLGNNPGGGLGGKPLG 387
Query: 386 TPTTQATSAFGTPTQSTGLS 405
A G G S
Sbjct: 388 GTGNGGIGASGIGNTGYGNS 407
>gnl|CDD|221480 pfam12238, MSA-2c, Merozoite surface antigen 2c. This family of
proteins is found in eukaryotes. Proteins in this family
are typically between 263 and 318 amino acids in length.
There is a conserved SFT sequence motif. MSA-2 is a
plasma membrane glycoprotein which can be found in
Babesia bovis species.
Length = 201
Score = 29.4 bits (66), Expect = 4.5
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 256 SGGTTTAQPGFGSSAFGTPSAPTPAFGSPAFGSTNTFGTP-TTQQSTGFGG 305
S GT+T +P GS+ T + PTP G+PA TP S FGG
Sbjct: 149 SQGTSTTRPSDGSATPNTSAPPTP--GNPAAQPEKPAETPKGNGSSFTFGG 197
>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 614
Score = 29.7 bits (67), Expect = 4.7
Identities = 14/66 (21%), Positives = 20/66 (30%)
Query: 501 PAATSQPSVGFGAAATTQSVGFGAPATSQSVTFGAQPASQPSVGFGAPATTQTGLSFGAP 560
P +P AAA S A + + AQP++ S A + A
Sbjct: 375 PKQHIKPVFTQPAAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVSVDPPAA 434
Query: 561 ATSQPA 566
P
Sbjct: 435 VPVNPP 440
>gnl|CDD|217495 pfam03326, Herpes_TAF50, Herpesvirus transcription activation
factor (transactivator). This family includes EBV BRLF1
and similar ORF 50 proteins from other herpesviruses.
Length = 500
Score = 29.8 bits (67), Expect = 5.2
Identities = 28/156 (17%), Positives = 40/156 (25%), Gaps = 16/156 (10%)
Query: 441 AQTGLSFGTPSATQASGGFSFGGGTAPQTGGLNFGTPTSTQQPLFGAPATTAQTGFSFGT 500
+ S +A + S Q + ++ F AP+TT T T
Sbjct: 266 PASPSSRRPSTAQEEQIACSSPQAEPEQGVQSYVPQSSDSRPSCFPAPSTTQPTFLPPNT 325
Query: 501 PAATSQPSVGFGAAATTQSVGFGAPATSQSVTFGAQPASQPSVGFGAPATTQ-TGLSFGA 559
+ P G SQ G A S +
Sbjct: 326 NKKAKR---------------DRRPQMVTPKQEGGAAVSQNHDGGTVRAPRGRPSGSGQS 370
Query: 560 PATSQPALSFGSSATGQAAGFSFGSSAPASSQPSLS 595
P ++ P LS + AA PA Q L
Sbjct: 371 PPSNSPLLSSLADTPSGAAHQPASLLPPAVVQQQLE 406
>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit.
Transcription initiation factor IIA (TFIIA) is a
heterotrimer, the three subunits being known as alpha,
beta, and gamma, in order of molecular weight. The N and
C-terminal domains of the gamma subunit are represented
in pfam02268 and pfam02751, respectively. This family
represents the precursor that yields both the alpha and
beta subunits. The TFIIA heterotrimer is an essential
general transcription initiation factor for the
expression of genes transcribed by RNA polymerase II.
Together with TFIID, TFIIA binds to the promoter region;
this is the first step in the formation of a
pre-initiation complex (PIC). Binding of the rest of the
transcription machinery follows this step. After
initiation, the PIC does not completely dissociate from
the promoter. Some components, including TFIIA, remain
attached and re-initiate a subsequent round of
transcription.
Length = 332
Score = 29.3 bits (66), Expect = 5.6
Identities = 20/137 (14%), Positives = 27/137 (19%), Gaps = 15/137 (10%)
Query: 426 QSFGSTTPAQGFGSTAQTGLSFGTPSATQASGGFSFGGGTAPQTGGLNFGTPTSTQQPLF 485
Q + Q + A F+ G A T G Q P
Sbjct: 68 QPPPTQALQALPAGDQQQHNTPTGSPAANPPATFALPAGPAGPTIQTEPGQLYPVQVP-- 125
Query: 486 GAPATTAQTGFSFGTPAATSQPSVGFGAAATTQSVGFGAPATSQSVTFGAQPASQPSVGF 545
PA + A +GAPA+ Q +
Sbjct: 126 ---------VMVTQNPANSPLDQPAQQRALQQLQQRYGAPASGQLPSQQQSAQKNDES-- 174
Query: 546 GAPATTQTGLSFGAPAT 562
Q T
Sbjct: 175 --QLQQQPNGETPPQQT 189
>gnl|CDD|237657 PRK14281, PRK14281, chaperone protein DnaJ; Provisional.
Length = 397
Score = 29.4 bits (66), Expect = 5.8
Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Query: 223 GAGTTTSGQGFGGFGTGTATFGSTNTSTGGLFGSGGTTTAQPGFG-SSAFG 272
G G++ + G G+G G F ++ +FG G FG FG
Sbjct: 72 GVGSSAASGGGPGYGGGGGDFNDIFSAFNDMFGGGARRGGGSPFGFEDVFG 122
>gnl|CDD|237655 PRK14279, PRK14279, chaperone protein DnaJ; Provisional.
Length = 392
Score = 29.3 bits (66), Expect = 5.9
Identities = 14/39 (35%), Positives = 16/39 (41%), Gaps = 3/39 (7%)
Query: 222 FGAGTTTSGQGFGGFGTGTATFGSTNTSTGGLFGSGGTT 260
FG G GFGGFGTG + LF + G
Sbjct: 83 FGGRRFDGGGGFGGFGTGGDGAE---FNLNDLFDAAGRG 118
>gnl|CDD|237665 PRK14295, PRK14295, chaperone protein DnaJ; Provisional.
Length = 389
Score = 29.4 bits (66), Expect = 6.1
Identities = 21/64 (32%), Positives = 24/64 (37%), Gaps = 9/64 (14%)
Query: 213 FGSTATQPAFGAGTTTS-----GQGFGGFGTGTATFGSTNTST---GGLFGSGGTTTAQP 264
FG+ +P G G G FGG G G GGLF GG T QP
Sbjct: 78 FGNGGFRPGPGGGGGGGFNFDLGDLFGGGAQGGGGAGGGGGLGDVFGGLFNRGGRRT-QP 136
Query: 265 GFGS 268
G+
Sbjct: 137 RRGA 140
>gnl|CDD|217668 pfam03676, UPF0183, Uncharacterized protein family (UPF0183). This
family of proteins includes Lin-10 from C. elegans.
Length = 395
Score = 29.3 bits (66), Expect = 7.0
Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 5/57 (8%)
Query: 411 LFRSNETTATLDACVQSFGSTTP-----AQGFGSTAQTGLSFGTPSATQASGGFSFG 462
F S T++ SFG+T P + + GLSF P ++ + GF G
Sbjct: 83 YFNSPSVLPTIEQVYHSFGATHPGVYDASHQLYALFFRGLSFSFPIDSKYTPGFGHG 139
>gnl|CDD|184923 PRK14959, PRK14959, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 624
Score = 29.3 bits (65), Expect = 7.1
Identities = 22/100 (22%), Positives = 32/100 (32%), Gaps = 9/100 (9%)
Query: 499 GTPAATSQPSVGFGAAAT-----TQSVGFGAPATSQSVTFGA----QPASQPSVGFGAPA 549
P+ ++ G AAT TQ APA + + A P++ PS
Sbjct: 379 SAPSGSAAEGPASGGAATIPTPGTQGPQGTAPAAGMTPSSAAPATPAPSAAPSPRVPWDD 438
Query: 550 TTQTGLSFGAPATSQPALSFGSSATGQAAGFSFGSSAPAS 589
G P P + S G + S AP +
Sbjct: 439 APPAPPRSGIPPRPAPRMPEASPVPGAPDSVASASDAPPT 478
>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed.
Length = 1228
Score = 29.1 bits (66), Expect = 8.9
Identities = 13/77 (16%), Positives = 21/77 (27%), Gaps = 1/77 (1%)
Query: 475 GTPTSTQQPLFGAPATTAQTGFSFGTPAATSQPSVGFGAAATTQSVGFGAPATSQSVTFG 534
+ A A A A + P+ AA + A A + +
Sbjct: 43 APTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAA-PAAPPKPAAAAAAAAAPAAPPA 101
Query: 535 AQPASQPSVGFGAPATT 551
A A+ P+ T
Sbjct: 102 AAAAAAPAAAAVEDEVT 118
>gnl|CDD|234383 TIGR03895, protease_PatA, cyanobactin maturation protease,
PatA/PatG family. This model describes a protease
domain associated with the maturation of various members
of the cyanobactin family of ribosomally produced,
heavily modified bioactive metabolites. Members include
the PatA protein and C-terminal domain of the PatG
protein of Prochloron didemni, TenA and a region of TenG
from Nostoc spongiaeforme var. tenue, etc.
Length = 602
Score = 28.9 bits (65), Expect = 9.3
Identities = 22/107 (20%), Positives = 31/107 (28%), Gaps = 12/107 (11%)
Query: 494 TGFSFGTPAATSQPSVGFGAA-----ATTQSVGFGAPATSQSVTFGAQPASQPSVGFGAP 548
TG + TS+ A+ T +S P + P
Sbjct: 227 TGETMSEGLVTSEQDGVEEASGCGVQGTIESSTSVIPPGRAAEPAPVSIPVAAPGEGATP 286
Query: 549 ATTQTGLSFGA-PATSQPALSFGSSATGQAAGFSFGSSAPASSQPSL 594
A Q LS G P PA ++ G S S++P L
Sbjct: 287 AAAQIELSAGVLPNAISPATPVRPASNGVT------PSQAPSAEPQL 327
>gnl|CDD|225805 COG3266, DamX, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 292
Score = 28.8 bits (64), Expect = 9.6
Identities = 34/166 (20%), Positives = 50/166 (30%), Gaps = 20/166 (12%)
Query: 430 STTPAQGFGSTAQTGLSFGTPSATQASGGFSFGGGTAPQ-TGGL-NFGTPTSTQQPLFGA 487
+ P ++ L + + TQ + G + G L N L
Sbjct: 63 APGPTSAENTSQDLSLPPISSTPTQGQEPLAQDGQQRVEVQGDLNNAAVQPQNLSQLNNV 122
Query: 488 PATTAQTGFSFGTPAATSQPSVGFGAAATTQSVGFGAPATSQSVTFGAQPASQPSVGFGA 547
T+ T AT P + PA ++ V AQ S+P+V
Sbjct: 123 AVTSTLP-----TEPATVAPVRNASVPTAER------PAITRPVR--AQAVSEPAVE-PK 168
Query: 548 PATTQTGLSFGAPATSQPALSFGSSATGQAAGFSFGSSAPASSQPS 593
A T T A Q A + AT A + S S+ S
Sbjct: 169 AAKTATA----TEAKVQTASPAQTPATPPAGKGAAASGQLKSAPSS 210
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.314 0.129 0.391
Gapped
Lambda K H
0.267 0.0630 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 30,516,763
Number of extensions: 2921342
Number of successful extensions: 3049
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2727
Number of HSP's successfully gapped: 221
Length of query: 614
Length of database: 10,937,602
Length adjustment: 103
Effective length of query: 511
Effective length of database: 6,369,140
Effective search space: 3254630540
Effective search space used: 3254630540
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 62 (27.9 bits)