RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13798
         (614 letters)



>d1ohfa_ b.121.4.8 (A:) Tetraomegavirus capsid protein {Nudaurelia
           capensis omega virus [TaxId: 12541]}
          Length = 539

 Score = 30.7 bits (69), Expect = 0.50
 Identities = 30/156 (19%), Positives = 46/156 (29%), Gaps = 18/156 (11%)

Query: 101 PRDVEGPSPFSAGFSFGSTATQPAFGAGTTTSGQGFGGFGSATARLCNSIGSPAFGSTNT 160
           P      +   +GF      T+P   AG T +       GSA +           G    
Sbjct: 209 PIATTQNAVEGSGFVHPFNVTRPGIAAGVTLTWASMPPGGSAPS-----------GDPAW 257

Query: 161 FGTPTTQQSTGFGGFGTSTHLVHLVLSRQLPLRLDFHLAPQQHSQHLWAGFSFGSTATQP 220
               TTQ     GGF   T ++   + R   ++          + + W GF+        
Sbjct: 258 IPDSTTQFQWRHGGFDAPTGVITYTIPRGYTMQY------FDTTTNEWNGFANPDDVVTF 311

Query: 221 AFGAGTTTSGQGFGGFG-TGTATFGSTNTSTGGLFG 255
               G   +         T T T  +T TS   +  
Sbjct: 312 GQTGGAAGTNATITITAPTVTLTILATTTSAANVIN 347


>d2hgsa4 d.142.1.6 (A:3-201,A:304-474) Eukaryotic glutathione
           synthetase ATP-binding domain {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 370

 Score = 28.2 bits (63), Expect = 2.6
 Identities = 8/36 (22%), Positives = 12/36 (33%)

Query: 169 STGFGGFGTSTHLVHLVLSRQLPLRLDFHLAPQQHS 204
           S  FGG  + T  VH  +   L    +       + 
Sbjct: 147 SASFGGLASRTPAVHRHVLSVLSKTKEAGKILSNNP 182


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.314    0.129    0.391 

Gapped
Lambda     K      H
   0.267   0.0507    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,085,978
Number of extensions: 91849
Number of successful extensions: 200
Number of sequences better than 10.0: 1
Number of HSP's gapped: 193
Number of HSP's successfully gapped: 19
Length of query: 614
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 523
Effective length of database: 1,158,166
Effective search space: 605720818
Effective search space used: 605720818
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 56 (25.9 bits)