BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy138
(321 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 89.0 bits (219), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 81/140 (57%), Gaps = 2/140 (1%)
Query: 33 TSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLI 92
L+ AA+ G+D EV+ ++A+ + V +D+ T LH A L E +L+ D +
Sbjct: 4 KKLLEAARAGQDDEVRILMANGAD-VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-V 61
Query: 93 EAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVL 152
A D+DGYTPLHLAA G++ ++ LL A+VN++D +G++ +H A G +E +E +L
Sbjct: 62 NAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLL 121
Query: 153 SAGAEPSTPDIHGGYPIHYA 172
AGA+ + D G P A
Sbjct: 122 KAGADVNAQDKFGKTPFDLA 141
Score = 79.0 bits (193), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 45/103 (43%), Positives = 60/103 (58%), Gaps = 1/103 (0%)
Query: 210 GRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGAD 269
G P+ AA G + + L+KAGA+V A DKDG T LH AA GH E +E L+ GAD
Sbjct: 35 GYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK-AGAD 93
Query: 270 VDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
V+ D +G + L A GH + +LL+ GA N QD+ G+T
Sbjct: 94 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKT 136
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 85/191 (44%), Gaps = 46/191 (24%)
Query: 106 AAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHG 165
AA AG + L+A+ A+VN++D +G++ +H A G +E +E +L AGA+ + D G
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 68
Query: 166 GYPIHYASQMCGHASEMGNDVRVGLAXXXXXXXXXXXXXXXXXXGRQPILWAASAGSSDA 225
P+H AA G +
Sbjct: 69 YTPLH---------------------------------------------LAAREGHLEI 83
Query: 226 ILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAV 285
+ L+KAGA+V A DKDG T LH AA GH E +E L+ GADV+ D G + A+
Sbjct: 84 VEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK-AGADVNAQDKFGKTPFDLAI 142
Query: 286 TLGHADATTLL 296
G+ D +L
Sbjct: 143 DNGNEDIAEVL 153
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 58/101 (57%), Gaps = 1/101 (0%)
Query: 212 QPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVD 271
+ +L AA AG D + L+ GA+V A DKDG T LH AA GH E +E L+ GADV+
Sbjct: 4 KKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK-AGADVN 62
Query: 272 VIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
D +G + L A GH + +LL+ GA N +D+ G T
Sbjct: 63 AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYT 103
Score = 74.7 bits (182), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 76/171 (44%), Gaps = 45/171 (26%)
Query: 92 IEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETV 151
+ A D+DGYTPLHLAA G++ ++ LL A+VN++D +G++ +H A G +E +E +
Sbjct: 28 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVL 87
Query: 152 LSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAXXXXXXXXXXXXXXXXXXGR 211
L AGA+ + D G P+H
Sbjct: 88 LKAGADVNAKDKDGYTPLH----------------------------------------- 106
Query: 212 QPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETL 262
AA G + + L+KAGA+V A DK G T A G+ + E L
Sbjct: 107 ----LAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIDNGNEDIAEVL 153
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 63/125 (50%), Gaps = 2/125 (1%)
Query: 30 EGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAP 89
+G T L AA++G E+ +L V +D+ T LH A L E +L+
Sbjct: 34 DGYTPLHLAAREGH-LEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 92
Query: 90 DLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALE 149
D + A D+DGYTPLHLAA G++ ++ LL A+VN+QD G + A G + E
Sbjct: 93 D-VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIDNGNEDIAE 151
Query: 150 TVLSA 154
+ A
Sbjct: 152 VLQKA 156
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 89.0 bits (219), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 81/140 (57%), Gaps = 2/140 (1%)
Query: 33 TSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLI 92
L+ AA+ G+D EV+ ++A+ + V +D+ T LH A L E +L+ D +
Sbjct: 4 KKLLEAARAGQDDEVRILMANGAD-VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-V 61
Query: 93 EAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVL 152
A D+DGYTPLHLAA G++ ++ LL A+VN++D +G++ +H A G +E +E +L
Sbjct: 62 NAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLL 121
Query: 153 SAGAEPSTPDIHGGYPIHYA 172
AGA+ + D G P A
Sbjct: 122 KAGADVNAQDKFGKTPFDLA 141
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 85/191 (44%), Gaps = 46/191 (24%)
Query: 106 AAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHG 165
AA AG + L+A+ A+VN++D +G++ +H A G +E +E +L AGA+ + D G
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 68
Query: 166 GYPIHYASQMCGHASEMGNDVRVGLAXXXXXXXXXXXXXXXXXXGRQPILWAASAGSSDA 225
P+H AA G +
Sbjct: 69 YTPLH---------------------------------------------LAAREGHLEI 83
Query: 226 ILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAV 285
+ L+KAGA+V A DKDG T LH AA GH E +E L+ GADV+ D G + A+
Sbjct: 84 VEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK-AGADVNAQDKFGKTPFDLAI 142
Query: 286 TLGHADATTLL 296
GH D +L
Sbjct: 143 REGHEDIAEVL 153
Score = 79.0 bits (193), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 45/103 (43%), Positives = 60/103 (58%), Gaps = 1/103 (0%)
Query: 210 GRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGAD 269
G P+ AA G + + L+KAGA+V A DKDG T LH AA GH E +E L+ GAD
Sbjct: 35 GYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK-AGAD 93
Query: 270 VDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
V+ D +G + L A GH + +LL+ GA N QD+ G+T
Sbjct: 94 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKT 136
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 76/171 (44%), Gaps = 45/171 (26%)
Query: 92 IEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETV 151
+ A D+DGYTPLHLAA G++ ++ LL A+VN++D +G++ +H A G +E +E +
Sbjct: 28 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVL 87
Query: 152 LSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAXXXXXXXXXXXXXXXXXXGR 211
L AGA+ + D G P+H
Sbjct: 88 LKAGADVNAKDKDGYTPLH----------------------------------------- 106
Query: 212 QPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETL 262
AA G + + L+KAGA+V A DK G T A GH + E L
Sbjct: 107 ----LAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIREGHEDIAEVL 153
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 58/101 (57%), Gaps = 1/101 (0%)
Query: 212 QPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVD 271
+ +L AA AG D + L+ GA+V A DKDG T LH AA GH E +E L+ GADV+
Sbjct: 4 KKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK-AGADVN 62
Query: 272 VIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
D +G + L A GH + +LL+ GA N +D+ G T
Sbjct: 63 AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYT 103
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 63/125 (50%), Gaps = 2/125 (1%)
Query: 30 EGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAP 89
+G T L AA++G E+ +L V +D+ T LH A L E +L+
Sbjct: 34 DGYTPLHLAAREGH-LEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 92
Query: 90 DLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALE 149
D + A D+DGYTPLHLAA G++ ++ LL A+VN+QD G + A G + E
Sbjct: 93 D-VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIREGHEDIAE 151
Query: 150 TVLSA 154
+ A
Sbjct: 152 VLQKA 156
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/133 (36%), Positives = 79/133 (59%), Gaps = 2/133 (1%)
Query: 33 TSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLI 92
L+ AA+ G+D EV+ ++A+ + V +D+ T LH A L E +L+ D +
Sbjct: 16 KKLLEAARAGQDDEVRILMANGAD-VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-V 73
Query: 93 EAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVL 152
A D+DGYTPLHLAA G++ ++ LL A+VN++D +G++ +H A G +E +E +L
Sbjct: 74 NAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLL 133
Query: 153 SAGAEPSTPDIHG 165
AGA+ + D G
Sbjct: 134 KAGADVNAQDKFG 146
Score = 78.6 bits (192), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 45/103 (43%), Positives = 60/103 (58%), Gaps = 1/103 (0%)
Query: 210 GRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGAD 269
G P+ AA G + + L+KAGA+V A DKDG T LH AA GH E +E L+ GAD
Sbjct: 47 GYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK-AGAD 105
Query: 270 VDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
V+ D +G + L A GH + +LL+ GA N QD+ G+T
Sbjct: 106 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKT 148
Score = 78.2 bits (191), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 86/191 (45%), Gaps = 46/191 (24%)
Query: 106 AAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHG 165
AA AG + L+A+ A+VN++D +G++ +H A G +E +E +L AGA+ + D G
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 80
Query: 166 GYPIHYASQMCGHASEMGNDVRVGLAXXXXXXXXXXXXXXXXXXGRQPILWAASAGSSDA 225
P+H AA G +
Sbjct: 81 YTPLH---------------------------------------------LAAREGHLEI 95
Query: 226 ILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAV 285
+ L+KAGA+V A DKDG T LH AA GH E +E L+ GADV+ D G +A ++
Sbjct: 96 VEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK-AGADVNAQDKFGKTAFDISI 154
Query: 286 TLGHADATTLL 296
G+ D +L
Sbjct: 155 DNGNEDLAEIL 165
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 58/101 (57%), Gaps = 1/101 (0%)
Query: 212 QPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVD 271
+ +L AA AG D + L+ GA+V A DKDG T LH AA GH E +E L+ GADV+
Sbjct: 16 KKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK-AGADVN 74
Query: 272 VIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
D +G + L A GH + +LL+ GA N +D+ G T
Sbjct: 75 AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYT 115
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 77/171 (45%), Gaps = 45/171 (26%)
Query: 92 IEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETV 151
+ A D+DGYTPLHLAA G++ ++ LL A+VN++D +G++ +H A G +E +E +
Sbjct: 40 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVL 99
Query: 152 LSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAXXXXXXXXXXXXXXXXXXGR 211
L AGA+ + D G P+H
Sbjct: 100 LKAGADVNAKDKDGYTPLH----------------------------------------- 118
Query: 212 QPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETL 262
AA G + + L+KAGA+V A DK G TA + G+ + E L
Sbjct: 119 ----LAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/132 (37%), Positives = 76/132 (57%), Gaps = 2/132 (1%)
Query: 34 SLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIE 93
L+ AA+ G+D EV+ ++A+ + V D T LH A N L E +L+ D +
Sbjct: 17 KLLEAARAGQDDEVRILMANGAD-VNATDNDGYTPLHLAASNGHLEIVEVLLKNGAD-VN 74
Query: 94 AADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLS 153
A+D G TPLHLAA G++ ++ LL H A+VN+ DN+GH+ +H A G +E +E +L
Sbjct: 75 ASDLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLK 134
Query: 154 AGAEPSTPDIHG 165
GA+ + D G
Sbjct: 135 HGADVNAQDKFG 146
Score = 74.7 bits (182), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 61/103 (59%), Gaps = 1/103 (0%)
Query: 210 GRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGAD 269
G P+ AAS G + + L+K GA+V A D G+T LH AA+ GH E +E L+ GAD
Sbjct: 47 GYTPLHLAASNGHLEIVEVLLKNGADVNASDLTGITPLHLAAATGHLEIVEVLLK-HGAD 105
Query: 270 VDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
V+ D +G + L A GH + +LL++GA N QD+ G+T
Sbjct: 106 VNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQDKFGKT 148
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Query: 212 QPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVD 271
+ +L AA AG D + L+ GA+V A D DG T LH AAS GH E +E L+ GADV+
Sbjct: 16 KKLLEAARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLK-NGADVN 74
Query: 272 VIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
D G + L A GH + +LL++GA N D G T
Sbjct: 75 ASDLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHT 115
Score = 71.2 bits (173), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 86/191 (45%), Gaps = 46/191 (24%)
Query: 106 AAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHG 165
AA AG + L+A+ A+VN+ DN+G++ +H A G +E +E +L GA+ + D+ G
Sbjct: 21 AARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTG 80
Query: 166 GYPIHYASQMCGHASEMGNDVRVGLAXXXXXXXXXXXXXXXXXXGRQPILWAASAGSSDA 225
P+H AA+ G +
Sbjct: 81 ITPLH---------------------------------------------LAAATGHLEI 95
Query: 226 ILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAV 285
+ L+K GA+V A+D DG T LH AA GH E +E L+ GADV+ D G +A ++
Sbjct: 96 VEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLK-HGADVNAQDKFGKTAFDISI 154
Query: 286 TLGHADATTLL 296
G+ D +L
Sbjct: 155 DNGNEDLAEIL 165
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 72/171 (42%), Gaps = 45/171 (26%)
Query: 92 IEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETV 151
+ A D DGYTPLHLAA G++ ++ LL + A+VN+ D G + +H A G +E +E +
Sbjct: 40 VNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTGITPLHLAAATGHLEIVEVL 99
Query: 152 LSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAXXXXXXXXXXXXXXXXXXGR 211
L GA+ + D G P+H
Sbjct: 100 LKHGADVNAYDNDGHTPLH----------------------------------------- 118
Query: 212 QPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETL 262
AA G + + L+K GA+V A DK G TA + G+ + E L
Sbjct: 119 ----LAAKYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 86/289 (29%), Positives = 127/289 (43%), Gaps = 23/289 (7%)
Query: 28 TMEGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRK--TVLHYCAENTILSCAETIL 85
T G T L AA++G V+ +LA + T+K T LH A+ + AE +L
Sbjct: 110 TTAGHTPLHIAAREG---HVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLL 166
Query: 86 E--VAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCG 143
E P+ AA ++G TPLH+A N+ ++ LL + +S G++ +H A
Sbjct: 167 ERDAHPN---AAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQN 223
Query: 144 EVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAXXXXXXXXXXXX 203
+VE ++L G + + G P+H A+Q GHA EM
Sbjct: 224 QVEVARSLLQYGGSANAESVQGVTPLHLAAQE-GHA-EM----------VALLLSKQANG 271
Query: 204 XXXXXXGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLI 263
G P+ A G L+K G V+A + G T LH A+ G+ + ++ L+
Sbjct: 272 NLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLL 331
Query: 264 TLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
ADV+ G S L A GH D TLLL+ GA+PN G T
Sbjct: 332 Q-HQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTT 379
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 82/148 (55%), Gaps = 2/148 (1%)
Query: 28 TMEGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEV 87
+++G T L AAQ+G AE+ A+L S+ +++ T LH A+ + A+ +++
Sbjct: 242 SVQGVTPLHLAAQEG-HAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKH 300
Query: 88 APDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEA 147
+++A GYTPLH+A+ GN+ L+ LL H+A+VN++ G+S +H A G +
Sbjct: 301 G-VMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDI 359
Query: 148 LETVLSAGAEPSTPDIHGGYPIHYASQM 175
+ +L GA P+ G P+ A ++
Sbjct: 360 VTLLLKNGASPNEVSSDGTTPLAIAKRL 387
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 92/216 (42%), Gaps = 21/216 (9%)
Query: 101 TPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPST 160
TPLH+A+ G++P++ LL A+ N + + + +H A G E + +L A+ +
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA 75
Query: 161 PDIHGGYPIHYASQMCGHASE----MGNDVRVGLAXXXXXXXXXXXXXXXXXXGRQPILW 216
P+H A+++ GH + + N+ LA G P+
Sbjct: 76 KAKDDQTPLHCAARI-GHTNMVKLLLENNANPNLA---------------TTAGHTPLHI 119
Query: 217 AASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTN 276
AA G + +LAL++ A+ K G T LH AA G E L+ A + N
Sbjct: 120 AAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLE-RDAHPNAAGKN 178
Query: 277 GCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
G + L AV + D LLL G +P+ G T
Sbjct: 179 GLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYT 214
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 64/247 (25%), Positives = 97/247 (39%), Gaps = 14/247 (5%)
Query: 66 KTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANV 125
+T LH A A+ +L+ + A +D TPLH AA G+ ++ LL + AN
Sbjct: 48 ETPLHMAARAGHTEVAKYLLQNKAK-VNAKAKDDQTPLHCAARIGHTNMVKLLLENNANP 106
Query: 126 NSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGND 185
N GH+ +H A G VE + +L A + G P+H A++
Sbjct: 107 NLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKY--------GK 158
Query: 186 VRVGLAXXXXXXXXXXXXXXXXXXGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLT 245
VRV G P+ A + D + L+ G + + +G T
Sbjct: 159 VRVA----ELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYT 214
Query: 246 ALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNR 305
LH AA + E +L+ G + G + L A GHA+ LLL A N
Sbjct: 215 PLHIAAKQNQVEVARSLLQ-YGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNL 273
Query: 306 QDRKGRT 312
++ G T
Sbjct: 274 GNKSGLT 280
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 64/259 (24%), Positives = 99/259 (38%), Gaps = 29/259 (11%)
Query: 28 TMEGATSLMYAAQQGKDAEVKAILASR---PNAVRERDRTRKTVLHYCAENTILSCAETI 84
T +G T L AA+ GK V +L R PNA + T LH + L + +
Sbjct: 143 TKKGFTPLHVAAKYGK-VRVAELLLERDAHPNAA---GKNGLTPLHVAVHHNNLDIVKLL 198
Query: 85 LEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGE 144
L A +GYTPLH+AA V + +LL + + N++ +G + +H A G
Sbjct: 199 LPRGGSPHSPA-WNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGH 257
Query: 145 VEALETVLSAGAEPSTPDIHGGYPIHYASQ---------MCGHASEMGNDVRVG------ 189
E + +LS A + + G P+H +Q + H + R+G
Sbjct: 258 AEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHV 317
Query: 190 ------LAXXXXXXXXXXXXXXXXXXGRQPILWAASAGSSDAILALVKAGANVEAHDKDG 243
+ G P+ AA G +D + L+K GA+ DG
Sbjct: 318 ASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDG 377
Query: 244 LTALHCAASRGHRECLETL 262
T L A G+ + L
Sbjct: 378 TTPLAIAKRLGYISVTDVL 396
Score = 35.4 bits (80), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 63/143 (44%), Gaps = 11/143 (7%)
Query: 3 DVISIFLSKPNLVWENGSFDKKVHNTMEGATSLMYAAQQGKDAEVKAILASRPNAVRERD 62
+++++ LSK NG+ K G T L AQ+G V +L V
Sbjct: 259 EMVALLLSK----QANGNLGNK-----SGLTPLHLVAQEG-HVPVADVLIKHGVMVDATT 308
Query: 63 RTRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHR 122
R T LH + + + +L+ D + A + GY+PLH AA G+ ++ LL +
Sbjct: 309 RMGYTPLHVASHYGNIKLVKFLLQHQAD-VNAKTKLGYSPLHQAAQQGHTDIVTLLLKNG 367
Query: 123 ANVNSQDNEGHSVVHWATVCGEV 145
A+ N ++G + + A G +
Sbjct: 368 ASPNEVSSDGTTPLAIAKRLGYI 390
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 60/103 (58%), Gaps = 1/103 (0%)
Query: 210 GRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGAD 269
GR P+ +AA G + + L+ GA+V A D DG T LH AA GH+E ++ LI+ GAD
Sbjct: 37 GRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLIS-KGAD 95
Query: 270 VDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
V+ D++G + L YA GH + LL+ GA N D GRT
Sbjct: 96 VNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTSDSDGRT 138
Score = 79.0 bits (193), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 42/101 (41%), Positives = 61/101 (60%), Gaps = 1/101 (0%)
Query: 212 QPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVD 271
+ ++ AA G+ D + L++ GA+V A D DG T LH AA GH+E ++ LI+ GADV+
Sbjct: 6 KRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLIS-KGADVN 64
Query: 272 VIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
D++G + L YA GH + LL+ GA N +D GRT
Sbjct: 65 AKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRT 105
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 87/196 (44%), Gaps = 46/196 (23%)
Query: 106 AAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHG 165
AA GN + L+ + A+VN+ D++G + +H+A G E ++ ++S GA+ + D G
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDG 70
Query: 166 GYPIHYASQMCGHASEMGNDVRVGLAXXXXXXXXXXXXXXXXXXGRQPILWAASAGSSDA 225
P+HY AA G +
Sbjct: 71 RTPLHY---------------------------------------------AAKEGHKEI 85
Query: 226 ILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAV 285
+ L+ GA+V A D DG T LH AA GH+E ++ LI+ GADV+ D++G + L A
Sbjct: 86 VKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLIS-KGADVNTSDSDGRTPLDLAR 144
Query: 286 TLGHADATTLLLQYGA 301
G+ + LL + G
Sbjct: 145 EHGNEEIVKLLEKQGG 160
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 83/196 (42%), Gaps = 46/196 (23%)
Query: 72 CAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNE 131
AEN + ++E D + A+D DG TPLH AA G+ ++ L++ A+VN++D++
Sbjct: 11 AAENGNKDRVKDLIENGAD-VNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSD 69
Query: 132 GHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLA 191
G + +H+A G E ++ ++S GA+ + D G P+HY
Sbjct: 70 GRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHY-------------------- 109
Query: 192 XXXXXXXXXXXXXXXXXXGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAA 251
AA G + + L+ GA+V D DG T L A
Sbjct: 110 -------------------------AAKEGHKEIVKLLISKGADVNTSDSDGRTPLDLAR 144
Query: 252 SRGHRECLETLITLCG 267
G+ E ++ L G
Sbjct: 145 EHGNEEIVKLLEKQGG 160
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 81.3 bits (199), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 59/103 (57%), Gaps = 1/103 (0%)
Query: 210 GRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGAD 269
GR P+ +AA G + + L+ GA+ A D DG T LH AA GH+E ++ L++ GAD
Sbjct: 37 GRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLS-KGAD 95
Query: 270 VDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
+ D++G + L YA GH + LLL GA PN D GRT
Sbjct: 96 PNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSDSDGRT 138
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 77/142 (54%), Gaps = 6/142 (4%)
Query: 35 LMYAAQQGKDAEVKAIL--ASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLI 92
L+ AA+ G VK +L + PNA D +T LHY AEN + +L D
Sbjct: 8 LIEAAENGNKDRVKDLLENGADPNAS---DSDGRTPLHYAAENGHKEIVKLLLSKGAD-P 63
Query: 93 EAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVL 152
A D DG TPLH AA G+ ++ LL+ A+ N++D++G + +H+A G E ++ +L
Sbjct: 64 NAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLL 123
Query: 153 SAGAEPSTPDIHGGYPIHYASQ 174
S GA+P+T D G P+ A +
Sbjct: 124 SKGADPNTSDSDGRTPLDLARE 145
Score = 77.4 bits (189), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 41/99 (41%), Positives = 59/99 (59%), Gaps = 1/99 (1%)
Query: 214 ILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVI 273
++ AA G+ D + L++ GA+ A D DG T LH AA GH+E ++ L++ GAD +
Sbjct: 8 LIEAAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLS-KGADPNAK 66
Query: 274 DTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
D++G + L YA GH + LLL GA PN +D GRT
Sbjct: 67 DSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRT 105
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 84/166 (50%), Gaps = 13/166 (7%)
Query: 72 CAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNE 131
AEN + +LE D A+D DG TPLH AA G+ ++ LL+ A+ N++D++
Sbjct: 11 AAENGNKDRVKDLLENGAD-PNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSD 69
Query: 132 GHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLA 191
G + +H+A G E ++ +LS GA+P+ D G P+HYA++ GH E+ V++ L+
Sbjct: 70 GRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAE-NGH-KEI---VKLLLS 124
Query: 192 XXXXXXXXXXXXXXXXXXGRQPILWAASAGSSDAILALVKAGANVE 237
GR P+ A G+ + + L K G +E
Sbjct: 125 KGADPNTSDSD-------GRTPLDLAREHGNEEIVKLLEKQGGWLE 163
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 79/162 (48%), Gaps = 12/162 (7%)
Query: 106 AAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHG 165
AA GN + LL + A+ N+ D++G + +H+A G E ++ +LS GA+P+ D G
Sbjct: 11 AAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDG 70
Query: 166 GYPIHYASQMCGHASEMGNDVRVGLAXXXXXXXXXXXXXXXXXXGRQPILWAASAGSSDA 225
P+HYA++ GH E+ V++ L+ GR P+ +AA G +
Sbjct: 71 RTPLHYAAE-NGH-KEI---VKLLLSKGADPNAKDSD-------GRTPLHYAAENGHKEI 118
Query: 226 ILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCG 267
+ L+ GA+ D DG T L A G+ E ++ L G
Sbjct: 119 VKLLLSKGADPNTSDSDGRTPLDLAREHGNEEIVKLLEKQGG 160
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 66/129 (51%), Gaps = 6/129 (4%)
Query: 30 EGATSLMYAAQQGKDAEVKAILA--SRPNAVRERDRTRKTVLHYCAENTILSCAETILEV 87
+G T L YAA+ G VK +L+ + PNA +D +T LHY AEN + +L
Sbjct: 36 DGRTPLHYAAENGHKEIVKLLLSKGADPNA---KDSDGRTPLHYAAENGHKEIVKLLLSK 92
Query: 88 APDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEA 147
D A D DG TPLH AA G+ ++ LL+ A+ N+ D++G + + A G E
Sbjct: 93 GAD-PNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSDSDGRTPLDLAREHGNEEI 151
Query: 148 LETVLSAGA 156
++ + G
Sbjct: 152 VKLLEKQGG 160
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/103 (43%), Positives = 61/103 (59%), Gaps = 1/103 (0%)
Query: 210 GRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGAD 269
GR P+ AA G + + L++AGA+V A DK+G T LH AA GH E ++ L+ GAD
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE-AGAD 60
Query: 270 VDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
V+ D NG + L A GH + LLL+ GA N +D+ GRT
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRT 103
Score = 74.7 bits (182), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 65/109 (59%), Gaps = 1/109 (0%)
Query: 66 KTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANV 125
+T LH A N L + +LE D + A D++G TPLHLAA G++ ++ LL A+V
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 126 NSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQ 174
N++D G + +H A G +E ++ +L AGA+ + D +G P+H A++
Sbjct: 62 NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAAR 110
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 71/126 (56%), Gaps = 2/126 (1%)
Query: 31 GATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPD 90
G T L AA+ G VK +L + + V +D+ +T LH A N L + +LE D
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 91 LIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALET 150
+ A D++G TPLHLAA G++ ++ LL A+VN++D G + +H A G +E ++
Sbjct: 61 -VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKL 119
Query: 151 VLSAGA 156
+L AGA
Sbjct: 120 LLEAGA 125
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/92 (43%), Positives = 54/92 (58%), Gaps = 1/92 (1%)
Query: 210 GRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGAD 269
GR P+ AA G + + L++AGA+V A DK+G T LH AA GH E ++ L+ GAD
Sbjct: 35 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE-AGAD 93
Query: 270 VDVIDTNGCSALFYAVTLGHADATTLLLQYGA 301
V+ D NG + L A GH + LLL+ GA
Sbjct: 94 VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 76/166 (45%), Gaps = 45/166 (27%)
Query: 98 DGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAE 157
+G TPLHLAA G++ ++ LL A+VN++D G + +H A G +E ++ +L AGA+
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 158 PSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAXXXXXXXXXXXXXXXXXXGRQPILWA 217
+ D +G P+H A
Sbjct: 61 VNAKDKNGRTPLH---------------------------------------------LA 75
Query: 218 ASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLI 263
A G + + L++AGA+V A DK+G T LH AA GH E ++ L+
Sbjct: 76 ARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL 121
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 242 DGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGA 301
+G T LH AA GH E ++ L+ GADV+ D NG + L A GH + LLL+ GA
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLE-AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 302 TPNRQDRKGRT 312
N +D+ GRT
Sbjct: 60 DVNAKDKNGRT 70
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 120/292 (41%), Gaps = 18/292 (6%)
Query: 35 LMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIEA 94
L+ AA+ G + ++ A+L D + T LH A + + +L+ D + A
Sbjct: 28 LLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGAD-VHA 86
Query: 95 ADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSA 154
D+ G PLH A G+ + LL H A VN+ D + +H A VE +LS
Sbjct: 87 KDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSH 146
Query: 155 GAEPSTPDIHGGYPIHYAS----------QMCGHASEMGNDVRVGLAXXXXXXXXXXXXX 204
GA+P+ + HG + A + GH+ + R
Sbjct: 147 GADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHS--LLQAAREADLAKVKKTLALEIIN 204
Query: 205 XXXXXGRQPILWAASAG----SSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLE 260
+ L A A L++ GANV +KD +T LH AA R H + +E
Sbjct: 205 FKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVME 264
Query: 261 TLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
L GA ++ +D+ G +AL A GH LLL YG+ P+ +G T
Sbjct: 265 VLHK-HGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFT 315
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 79/156 (50%), Gaps = 18/156 (11%)
Query: 34 SLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTI----LSCAETILEVAP 89
SL+ AA++ A+VK LA ++ ++ +T LH CA ++ AE +L
Sbjct: 181 SLLQAAREADLAKVKKTLALEIINFKQ-PQSHETALH-CAVASLHPKRKQVAELLLRKGA 238
Query: 90 DLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALE 149
++ E ++D TPLH+AA + ++ L H A +N+ D+ G + +H A + G ++
Sbjct: 239 NVNEK-NKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCR 297
Query: 150 TVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGND 185
+LS G++PS + G A++MGN+
Sbjct: 298 LLLSYGSDPSIISLQGFT-----------AAQMGNE 322
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 45/93 (48%), Gaps = 7/93 (7%)
Query: 213 PILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDV 272
P+ AA +D + L K GA + A D G TALH AA GH + L++ G+D +
Sbjct: 250 PLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSY-GSDPSI 308
Query: 273 IDTNGCSALFYAVTLGHADATTLLLQYGATPNR 305
I G F A +G+ +L + +TP R
Sbjct: 309 ISLQG----FTAAQMGNEAVQQILSE--STPMR 335
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 76/132 (57%), Gaps = 2/132 (1%)
Query: 34 SLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIE 93
L+ AA+ G+D EV+ ++A+ + V D + T LH A N L E +L+ D +
Sbjct: 17 KLLEAARAGRDDEVRILMANGAD-VNAEDASGWTPLHLAAFNGHLEIVEVLLKNGAD-VN 74
Query: 94 AADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLS 153
A D G TPL LAA+ G++ ++ LL + A+VN+ D EGH+ +H A + G +E +E +L
Sbjct: 75 AVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLK 134
Query: 154 AGAEPSTPDIHG 165
GA+ + D G
Sbjct: 135 NGADVNAQDKFG 146
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 55/101 (54%), Gaps = 1/101 (0%)
Query: 212 QPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVD 271
+ +L AA AG D + L+ GA+V A D G T LH AA GH E +E L+ GADV+
Sbjct: 16 KKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLK-NGADVN 74
Query: 272 VIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
+D G + L A GH + +LL+ GA N D +G T
Sbjct: 75 AVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHT 115
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 76/174 (43%), Gaps = 45/174 (25%)
Query: 92 IEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETV 151
+ A D G+TPLHLAA G++ ++ LL + A+VN+ D+ G + + A + G +E +E +
Sbjct: 40 VNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVL 99
Query: 152 LSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAXXXXXXXXXXXXXXXXXXGR 211
L GA+ + D+ G P+H A+ M GH
Sbjct: 100 LKNGADVNANDMEGHTPLHLAA-MFGHL-------------------------------- 126
Query: 212 QPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITL 265
+ + L+K GA+V A DK G TA + G+ + E L L
Sbjct: 127 ------------EIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 56/103 (54%), Gaps = 1/103 (0%)
Query: 210 GRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGAD 269
G P+ AA G + + L+K GA+V A D G+T L AA GH E +E L+ GAD
Sbjct: 47 GWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLK-NGAD 105
Query: 270 VDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
V+ D G + L A GH + +LL+ GA N QD+ G+T
Sbjct: 106 VNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKT 148
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 83/191 (43%), Gaps = 46/191 (24%)
Query: 106 AAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHG 165
AA AG + L+A+ A+VN++D G + +H A G +E +E +L GA+ + D G
Sbjct: 21 AARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAG 80
Query: 166 GYPIHYASQMCGHASEMGNDVRVGLAXXXXXXXXXXXXXXXXXXGRQPILWAASAGSSDA 225
P+ A+ + GH +
Sbjct: 81 MTPLRLAA-LFGHL--------------------------------------------EI 95
Query: 226 ILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAV 285
+ L+K GA+V A+D +G T LH AA GH E +E L+ GADV+ D G +A ++
Sbjct: 96 VEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLK-NGADVNAQDKFGKTAFDISI 154
Query: 286 TLGHADATTLL 296
G+ D +L
Sbjct: 155 DNGNEDLAEIL 165
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 77/132 (58%), Gaps = 2/132 (1%)
Query: 34 SLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIE 93
L+ AA+ G+D EV+ ++A+ + V D T LH N L E +L+ A D +
Sbjct: 17 KLLEAARAGQDDEVRILMANGAD-VNANDWFGITPLHLVVNNGHLEIIEVLLKYAAD-VN 74
Query: 94 AADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLS 153
A+D+ G+TPLHLAA G++ ++ LL + A+VN+ D +G++ +H A G +E +E +L
Sbjct: 75 ASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLK 134
Query: 154 AGAEPSTPDIHG 165
GA+ + D G
Sbjct: 135 YGADVNAQDKFG 146
Score = 74.3 bits (181), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 58/103 (56%), Gaps = 1/103 (0%)
Query: 210 GRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGAD 269
G P+ + G + I L+K A+V A DK G T LH AA RGH E +E L+ GAD
Sbjct: 47 GITPLHLVVNNGHLEIIEVLLKYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLK-YGAD 105
Query: 270 VDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
V+ +D G + L A GH + +LL+YGA N QD+ G+T
Sbjct: 106 VNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQDKFGKT 148
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Query: 212 QPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVD 271
+ +L AA AG D + L+ GA+V A+D G+T LH + GH E +E L+ ADV+
Sbjct: 16 KKLLEAARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYA-ADVN 74
Query: 272 VIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
D +G + L A GH + +LL+YGA N D +G T
Sbjct: 75 ASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYT 115
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 69/174 (39%), Gaps = 45/174 (25%)
Query: 92 IEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETV 151
+ A D G TPLHL G++ +I LL + A+VN+ D G + +H A G +E +E +
Sbjct: 40 VNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKSGWTPLHLAAYRGHLEIVEVL 99
Query: 152 LSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAXXXXXXXXXXXXXXXXXXGR 211
L GA+ + D G P+H
Sbjct: 100 LKYGADVNAMDYQGYTPLHL---------------------------------------- 119
Query: 212 QPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITL 265
AA G + + L+K GA+V A DK G TA + G+ + E L L
Sbjct: 120 -----AAEDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 59/103 (57%), Gaps = 1/103 (0%)
Query: 210 GRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGAD 269
GR P+ AA G + + L+ GA+V A D DG T LH AA GH+E ++ LI+ GAD
Sbjct: 37 GRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLIS-KGAD 95
Query: 270 VDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
V+ D++G + L +A GH + LL+ GA N D GRT
Sbjct: 96 VNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRT 138
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 61/101 (60%), Gaps = 1/101 (0%)
Query: 212 QPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVD 271
+ ++ AA G+ D + L++ GA+V A D DG T LH AA GH+E ++ LI+ GADV+
Sbjct: 6 KRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLIS-KGADVN 64
Query: 272 VIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
D++G + L +A GH + LL+ GA N +D GRT
Sbjct: 65 AKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRT 105
Score = 71.6 bits (174), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 86/196 (43%), Gaps = 46/196 (23%)
Query: 106 AAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHG 165
AA GN + L+ + A+VN+ D++G + +H A G E ++ ++S GA+ + D G
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDG 70
Query: 166 GYPIHYASQMCGHASEMGNDVRVGLAXXXXXXXXXXXXXXXXXXGRQPILWAASAGSSDA 225
P+H+ AA G +
Sbjct: 71 RTPLHH---------------------------------------------AAENGHKEV 85
Query: 226 ILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAV 285
+ L+ GA+V A D DG T LH AA GH+E ++ LI+ GADV+ D++G + L A
Sbjct: 86 VKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLIS-KGADVNTSDSDGRTPLDLAR 144
Query: 286 TLGHADATTLLLQYGA 301
G+ + LL + G
Sbjct: 145 EHGNEEVVKLLEKQGG 160
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 82/196 (41%), Gaps = 46/196 (23%)
Query: 72 CAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNE 131
AEN + ++E D + A+D DG TPLH AA G+ ++ L++ A+VN++D++
Sbjct: 11 AAENGNKDRVKDLIENGAD-VNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSD 69
Query: 132 GHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLA 191
G + +H A G E ++ ++S GA+ + D G P+H+
Sbjct: 70 GRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHH-------------------- 109
Query: 192 XXXXXXXXXXXXXXXXXXGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAA 251
AA G + + L+ GA+V D DG T L A
Sbjct: 110 -------------------------AAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAR 144
Query: 252 SRGHRECLETLITLCG 267
G+ E ++ L G
Sbjct: 145 EHGNEEVVKLLEKQGG 160
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 66/127 (51%), Gaps = 2/127 (1%)
Query: 30 EGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAP 89
+G T L +AA+ G EV +L S+ V +D +T LH+ AEN + ++
Sbjct: 36 DGRTPLHHAAENGH-KEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGA 94
Query: 90 DLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALE 149
D + A D DG TPLH AA G+ ++ L++ A+VN+ D++G + + A G E ++
Sbjct: 95 D-VNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVK 153
Query: 150 TVLSAGA 156
+ G
Sbjct: 154 LLEKQGG 160
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 77.8 bits (190), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 45/104 (43%), Positives = 62/104 (59%), Gaps = 1/104 (0%)
Query: 212 QPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVD 271
+ +L AA AG D + L+ GA+ A+D G T LH AA+ GH E +E L+ GADV+
Sbjct: 4 KKLLEAARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLR-NGADVN 62
Query: 272 VIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRTYEY 315
+DTNG + L A +LGH + +LL+YGA N +D G T Y
Sbjct: 63 AVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLY 106
Score = 77.8 bits (190), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 62/103 (60%), Gaps = 1/103 (0%)
Query: 210 GRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGAD 269
GR P+ AA+ G + + L++ GA+V A D +G T LH AAS GH E +E L+ GAD
Sbjct: 35 GRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGTTPLHLAASLGHLEIVEVLLK-YGAD 93
Query: 270 VDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
V+ D G + L+ A GH + +LL++GA N QD+ G+T
Sbjct: 94 VNAKDATGITPLYLAAYWGHLEIVEVLLKHGADVNAQDKFGKT 136
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 73/132 (55%), Gaps = 2/132 (1%)
Query: 34 SLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIE 93
L+ AA+ G+D EV+ ++A+ +A D +T LH A L E +L D +
Sbjct: 5 KLLEAARAGQDDEVRILMANGADA-NAYDHYGRTPLHMAAAVGHLEIVEVLLRNGAD-VN 62
Query: 94 AADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLS 153
A D +G TPLHLAA G++ ++ LL + A+VN++D G + ++ A G +E +E +L
Sbjct: 63 AVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLK 122
Query: 154 AGAEPSTPDIHG 165
GA+ + D G
Sbjct: 123 HGADVNAQDKFG 134
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 83/191 (43%), Gaps = 46/191 (24%)
Query: 106 AAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHG 165
AA AG + L+A+ A+ N+ D+ G + +H A G +E +E +L GA+ + D +G
Sbjct: 9 AARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNG 68
Query: 166 GYPIHYASQMCGHASEMGNDVRVGLAXXXXXXXXXXXXXXXXXXGRQPILWAASAGSSDA 225
P+H AAS G +
Sbjct: 69 TTPLH---------------------------------------------LAASLGHLEI 83
Query: 226 ILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAV 285
+ L+K GA+V A D G+T L+ AA GH E +E L+ GADV+ D G +A ++
Sbjct: 84 VEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLK-HGADVNAQDKFGKTAFDISI 142
Query: 286 TLGHADATTLL 296
+G+ D +L
Sbjct: 143 DIGNEDLAEIL 153
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 70/169 (41%), Gaps = 45/169 (26%)
Query: 94 AADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLS 153
A D G TPLH+AA G++ ++ LL + A+VN+ D G + +H A G +E +E +L
Sbjct: 30 AYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGTTPLHLAASLGHLEIVEVLLK 89
Query: 154 AGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAXXXXXXXXXXXXXXXXXXGRQP 213
GA+ + D G P++ A+
Sbjct: 90 YGADVNAKDATGITPLYLAAY--------------------------------------- 110
Query: 214 ILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETL 262
W G + + L+K GA+V A DK G TA + G+ + E L
Sbjct: 111 --W----GHLEIVEVLLKHGADVNAQDKFGKTAFDISIDIGNEDLAEIL 153
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 77.8 bits (190), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 78/132 (59%), Gaps = 2/132 (1%)
Query: 34 SLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIE 93
L+ AA+ G+D EV+ ++A+ + V D T T LH A + L E +L+ D ++
Sbjct: 17 KLLEAARAGQDDEVRILMANGAD-VNAADNTGTTPLHLAAYSGHLEIVEVLLKHGAD-VD 74
Query: 94 AADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLS 153
A+D GYTPLHLAA G++ ++ LL + A+VN+ D++G + +H A G +E +E +L
Sbjct: 75 ASDVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLK 134
Query: 154 AGAEPSTPDIHG 165
GA+ + D G
Sbjct: 135 HGADVNAQDKFG 146
Score = 71.2 bits (173), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 62/103 (60%), Gaps = 1/103 (0%)
Query: 210 GRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGAD 269
G P+ AA +G + + L+K GA+V+A D G T LH AA GH E +E L+ GAD
Sbjct: 47 GTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFGYTPLHLAAYWGHLEIVEVLLK-NGAD 105
Query: 270 VDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
V+ +D++G + L A G+ + +LL++GA N QD+ G+T
Sbjct: 106 VNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQDKFGKT 148
Score = 67.8 bits (164), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 83/191 (43%), Gaps = 46/191 (24%)
Query: 106 AAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHG 165
AA AG + L+A+ A+VN+ DN G + +H A G +E +E +L GA+ D+ G
Sbjct: 21 AARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFG 80
Query: 166 GYPIHYASQMCGHASEMGNDVRVGLAXXXXXXXXXXXXXXXXXXGRQPILWAASAGSSDA 225
P+H A+ W G +
Sbjct: 81 YTPLHLAAY-----------------------------------------W----GHLEI 95
Query: 226 ILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAV 285
+ L+K GA+V A D DG+T LH AA G+ E +E L+ GADV+ D G +A ++
Sbjct: 96 VEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLK-HGADVNAQDKFGKTAFDISI 154
Query: 286 TLGHADATTLL 296
G+ D +L
Sbjct: 155 DNGNEDLAEIL 165
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 55/103 (53%), Gaps = 2/103 (1%)
Query: 210 GRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGAD 269
GR+ +L AA AG D + L+ GA+V A D G T LH AA GH E +E L+ GAD
Sbjct: 15 GRK-LLEAARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLK-HGAD 72
Query: 270 VDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
VD D G + L A GH + +LL+ GA N D G T
Sbjct: 73 VDASDVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMT 115
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 76/174 (43%), Gaps = 45/174 (25%)
Query: 92 IEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETV 151
+ AAD G TPLHLAA +G++ ++ LL H A+V++ D G++ +H A G +E +E +
Sbjct: 40 VNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFGYTPLHLAAYWGHLEIVEVL 99
Query: 152 LSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAXXXXXXXXXXXXXXXXXXGR 211
L GA+ + D G P+H A++
Sbjct: 100 LKNGADVNAMDSDGMTPLHLAAK------------------------------------- 122
Query: 212 QPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITL 265
W G + + L+K GA+V A DK G TA + G+ + E L L
Sbjct: 123 ----W----GYLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 77.8 bits (190), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 44/101 (43%), Positives = 61/101 (60%), Gaps = 1/101 (0%)
Query: 212 QPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVD 271
+ +L A AG D + L+ GA+V A D G+T LH AA RGH E +E L+ GADV+
Sbjct: 16 KKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLK-HGADVN 74
Query: 272 VIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
D+ G + L A T+GH + +LL+YGA N QD+ G+T
Sbjct: 75 ASDSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKT 115
Score = 57.8 bits (138), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 45/74 (60%)
Query: 92 IEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETV 151
+ A D+ G TPLHLAA G++ ++ LL H A+VN+ D+ G + +H A G +E +E +
Sbjct: 40 VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAATVGHLEIVEVL 99
Query: 152 LSAGAEPSTPDIHG 165
L GA+ + D G
Sbjct: 100 LEYGADVNAQDKFG 113
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 57/101 (56%), Gaps = 2/101 (1%)
Query: 34 SLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIE 93
L+ A + G+D EV+ ++A+ + V D T LH A+ L E +L+ D +
Sbjct: 17 KLLEATRAGQDDEVRILMANGAD-VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGAD-VN 74
Query: 94 AADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHS 134
A+D G TPLHLAA G++ ++ LL + A+VN+QD G +
Sbjct: 75 ASDSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKT 115
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 210 GRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGAD 269
G P+ AA G + + L+K GA+V A D G T LH AA+ GH E +E L+ GAD
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAATVGHLEIVEVLLE-YGAD 105
Query: 270 VDVIDTNGCSALFYAVTLGHADATTLL 296
V+ D G +A ++ G+ D +L
Sbjct: 106 VNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 61/157 (38%), Gaps = 45/157 (28%)
Query: 109 AGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYP 168
AG + L+A+ A+VN+ D+ G + +H A G +E +E +L GA+ + D G P
Sbjct: 24 AGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTP 83
Query: 169 IHYASQMCGHASEMGNDVRVGLAXXXXXXXXXXXXXXXXXXGRQPILWAASAGSSDAILA 228
+H AA+ G + +
Sbjct: 84 LHL---------------------------------------------AATVGHLEIVEV 98
Query: 229 LVKAGANVEAHDKDGLTALHCAASRGHRECLETLITL 265
L++ GA+V A DK G TA + G+ + E L L
Sbjct: 99 LLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 135
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 40/94 (42%), Gaps = 4/94 (4%)
Query: 27 NTME--GATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETI 84
N M+ G T L AA++G E+ +L V D +T LH A L E +
Sbjct: 41 NAMDDAGVTPLHLAAKRGH-LEIVEVLLKHGADVNASDSWGRTPLHLAATVGHLEIVEVL 99
Query: 85 LEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTL 118
LE D + A D+ G T ++ GN L L
Sbjct: 100 LEYGAD-VNAQDKFGKTAFDISIDNGNEDLAEIL 132
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 77.4 bits (189), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 44/101 (43%), Positives = 60/101 (59%), Gaps = 1/101 (0%)
Query: 212 QPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVD 271
+ +L AA AG D + L+ GA+V A D+DGLT LH AA GH E +E L+ GADV+
Sbjct: 16 KKLLEAARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLK-YGADVN 74
Query: 272 VIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
D G + L A GH + +LL++GA N QD+ G+T
Sbjct: 75 AEDNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKT 115
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 58/103 (56%), Gaps = 2/103 (1%)
Query: 32 ATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDL 91
L+ AA+ G+D EV+ ++A+ + V D T LH A+ L E +L+ D
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGAD-VNALDEDGLTPLHLAAQLGHLEIVEVLLKYGAD- 72
Query: 92 IEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHS 134
+ A D G TPLHLAAI G++ ++ LL H A+VN+QD G +
Sbjct: 73 VNAEDNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKT 115
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 48/74 (64%)
Query: 92 IEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETV 151
+ A DEDG TPLHLAA G++ ++ LL + A+VN++DN G + +H A + G +E +E +
Sbjct: 40 VNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLAAIRGHLEIVEVL 99
Query: 152 LSAGAEPSTPDIHG 165
L GA+ + D G
Sbjct: 100 LKHGADVNAQDKFG 113
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 210 GRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGAD 269
G P+ AA G + + L+K GA+V A D G+T LH AA RGH E +E L+ GAD
Sbjct: 47 GLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLAAIRGHLEIVEVLLK-HGAD 105
Query: 270 VDVIDTNGCSALFYAVTLGHADATTLL 296
V+ D G +A ++ G+ D +L
Sbjct: 106 VNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 62/160 (38%), Gaps = 45/160 (28%)
Query: 106 AAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHG 165
AA AG + L+A+ A+VN+ D +G + +H A G +E +E +L GA+ + D G
Sbjct: 21 AARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFG 80
Query: 166 GYPIHYASQMCGHASEMGNDVRVGLAXXXXXXXXXXXXXXXXXXGRQPILWAASAGSSDA 225
P+H AA G +
Sbjct: 81 ITPLH---------------------------------------------LAAIRGHLEI 95
Query: 226 ILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITL 265
+ L+K GA+V A DK G TA + G+ + E L L
Sbjct: 96 VEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 135
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 74/132 (56%), Gaps = 2/132 (1%)
Query: 34 SLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIE 93
L+ AA G+D EV+ ++A+ + V D T LH A N L E +L+ D +
Sbjct: 9 KLLEAAAAGQDDEVRILMANGAD-VNATDDNGLTPLHLAAANGQLEIVEVLLKNGAD-VN 66
Query: 94 AADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLS 153
A+D G TPLHLAA G++ ++ LL H A+VN+ D G + +H A + G++E +E +L
Sbjct: 67 ASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLK 126
Query: 154 AGAEPSTPDIHG 165
GA+ + D G
Sbjct: 127 HGADVNAQDALG 138
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/101 (41%), Positives = 59/101 (58%), Gaps = 1/101 (0%)
Query: 212 QPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVD 271
+ +L AA+AG D + L+ GA+V A D +GLT LH AA+ G E +E L+ GADV+
Sbjct: 8 KKLLEAAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLK-NGADVN 66
Query: 272 VIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
D+ G + L A GH + +LL++GA N DR G T
Sbjct: 67 ASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWT 107
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 56/103 (54%), Gaps = 1/103 (0%)
Query: 210 GRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGAD 269
G P+ AA+ G + + L+K GA+V A D G+T LH AA GH E +E L+ GAD
Sbjct: 39 GLTPLHLAAANGQLEIVEVLLKNGADVNASDSAGITPLHLAAYDGHLEIVEVLLK-HGAD 97
Query: 270 VDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
V+ D G + L A G + +LL++GA N QD G T
Sbjct: 98 VNAYDRAGWTPLHLAALSGQLEIVEVLLKHGADVNAQDALGLT 140
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 74/171 (43%), Gaps = 45/171 (26%)
Query: 92 IEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETV 151
+ A D++G TPLHLAA G + ++ LL + A+VN+ D+ G + +H A G +E +E +
Sbjct: 32 VNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAGITPLHLAAYDGHLEIVEVL 91
Query: 152 LSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAXXXXXXXXXXXXXXXXXXGR 211
L GA+ + D G P+H
Sbjct: 92 LKHGADVNAYDRAGWTPLHL---------------------------------------- 111
Query: 212 QPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETL 262
AA +G + + L+K GA+V A D GLTA + ++G + E L
Sbjct: 112 -----AALSGQLEIVEVLLKHGADVNAQDALGLTAFDISINQGQEDLAEIL 157
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 61/103 (59%), Gaps = 1/103 (0%)
Query: 210 GRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGAD 269
G P+ AA G + + L+K GA+V A D G+T LH AA RGH E +E L+ GAD
Sbjct: 47 GWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLGVTPLHLAADRGHLEVVEVLLK-NGAD 105
Query: 270 VDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
V+ D NG + L A +GH + +LL++GA N QD+ G+T
Sbjct: 106 VNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNAQDKFGKT 148
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 72/132 (54%), Gaps = 2/132 (1%)
Query: 34 SLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIE 93
L+ AA+ G+D EV+ ++A+ + V D T LH A L E +L+ D +
Sbjct: 17 KLLEAARAGQDDEVRILMANGAD-VNASDHVGWTPLHLAAYFGHLEIVEVLLKNGAD-VN 74
Query: 94 AADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLS 153
A D G TPLHLAA G++ ++ LL + A+VN+ D+ G + +H A G +E +E +L
Sbjct: 75 ADDSLGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLK 134
Query: 154 AGAEPSTPDIHG 165
GA+ + D G
Sbjct: 135 HGADVNAQDKFG 146
Score = 64.7 bits (156), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 54/101 (53%), Gaps = 1/101 (0%)
Query: 212 QPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVD 271
+ +L AA AG D + L+ GA+V A D G T LH AA GH E +E L+ GADV+
Sbjct: 16 KKLLEAARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLK-NGADVN 74
Query: 272 VIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
D+ G + L A GH + +LL+ GA N D G T
Sbjct: 75 ADDSLGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFT 115
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 83/191 (43%), Gaps = 46/191 (24%)
Query: 106 AAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHG 165
AA AG + L+A+ A+VN+ D+ G + +H A G +E +E +L GA+ + D G
Sbjct: 21 AARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLG 80
Query: 166 GYPIHYASQMCGHASEMGNDVRVGLAXXXXXXXXXXXXXXXXXXGRQPILWAASAGSSDA 225
P+H AA G +
Sbjct: 81 VTPLHL---------------------------------------------AADRGHLEV 95
Query: 226 ILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAV 285
+ L+K GA+V A+D +G T LH AA+ GH E +E L+ GADV+ D G +A ++
Sbjct: 96 VEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLK-HGADVNAQDKFGKTAFDISI 154
Query: 286 TLGHADATTLL 296
G+ D +L
Sbjct: 155 DNGNEDLAEIL 165
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 76/174 (43%), Gaps = 45/174 (25%)
Query: 92 IEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETV 151
+ A+D G+TPLHLAA G++ ++ LL + A+VN+ D+ G + +H A G +E +E +
Sbjct: 40 VNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLGVTPLHLAADRGHLEVVEVL 99
Query: 152 LSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAXXXXXXXXXXXXXXXXXXGR 211
L GA+ + D +G P+H
Sbjct: 100 LKNGADVNANDHNGFTPLHL---------------------------------------- 119
Query: 212 QPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITL 265
AA+ G + + L+K GA+V A DK G TA + G+ + E L L
Sbjct: 120 -----AANIGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/101 (43%), Positives = 60/101 (59%), Gaps = 1/101 (0%)
Query: 212 QPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVD 271
+ +L A AG D + L+ GA+V A D G+T LH AA RGH E +E L+ GADV+
Sbjct: 16 KKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLK-HGADVN 74
Query: 272 VIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
D G + L A T+GH + +LL+YGA N QD+ G+T
Sbjct: 75 ASDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKT 115
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 44/74 (59%)
Query: 92 IEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETV 151
+ A D+ G TPLHLAA G++ ++ LL H A+VN+ D G + +H A G +E +E +
Sbjct: 40 VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAATVGHLEIVEVL 99
Query: 152 LSAGAEPSTPDIHG 165
L GA+ + D G
Sbjct: 100 LEYGADVNAQDKFG 113
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 57/101 (56%), Gaps = 2/101 (1%)
Query: 34 SLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIE 93
L+ A + G+D EV+ ++A+ + V D T LH A+ L E +L+ D +
Sbjct: 17 KLLEATRAGQDDEVRILMANGAD-VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGAD-VN 74
Query: 94 AADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHS 134
A+D G TPLHLAA G++ ++ LL + A+VN+QD G +
Sbjct: 75 ASDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKT 115
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 210 GRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGAD 269
G P+ AA G + + L+K GA+V A D G T LH AA+ GH E +E L+ GAD
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAATVGHLEIVEVLLE-YGAD 105
Query: 270 VDVIDTNGCSALFYAVTLGHADATTLL 296
V+ D G +A ++ G+ D +L
Sbjct: 106 VNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 62/157 (39%), Gaps = 45/157 (28%)
Query: 109 AGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYP 168
AG + L+A+ A+VN+ D+ G + +H A G +E +E +L GA+ + DI G P
Sbjct: 24 AGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTP 83
Query: 169 IHYASQMCGHASEMGNDVRVGLAXXXXXXXXXXXXXXXXXXGRQPILWAASAGSSDAILA 228
+H AA+ G + +
Sbjct: 84 LHL---------------------------------------------AATVGHLEIVEV 98
Query: 229 LVKAGANVEAHDKDGLTALHCAASRGHRECLETLITL 265
L++ GA+V A DK G TA + G+ + E L L
Sbjct: 99 LLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 135
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 40/94 (42%), Gaps = 4/94 (4%)
Query: 27 NTME--GATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETI 84
N M+ G T L AA++G E+ +L V D +T LH A L E +
Sbjct: 41 NAMDDAGVTPLHLAAKRGH-LEIVEVLLKHGADVNASDIWGRTPLHLAATVGHLEIVEVL 99
Query: 85 LEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTL 118
LE D + A D+ G T ++ GN L L
Sbjct: 100 LEYGAD-VNAQDKFGKTAFDISIDNGNEDLAEIL 132
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/101 (43%), Positives = 60/101 (59%), Gaps = 1/101 (0%)
Query: 212 QPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVD 271
+ +L A AG D + L+ GA+V A D G+T LH AA RGH E +E L+ GADV+
Sbjct: 16 KKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLK-HGADVN 74
Query: 272 VIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
D G + L A T+GH + +LL+YGA N QD+ G+T
Sbjct: 75 ARDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKT 115
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 45/74 (60%)
Query: 92 IEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETV 151
+ A D+ G TPLHLAA G++ ++ LL H A+VN++D G + +H A G +E +E +
Sbjct: 40 VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAATVGHLEIVEVL 99
Query: 152 LSAGAEPSTPDIHG 165
L GA+ + D G
Sbjct: 100 LEYGADVNAQDKFG 113
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 56/101 (55%), Gaps = 2/101 (1%)
Query: 34 SLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIE 93
L+ A + G+D EV+ ++A+ + V D T LH A+ L E +L+ D +
Sbjct: 17 KLLEATRAGQDDEVRILMANGAD-VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGAD-VN 74
Query: 94 AADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHS 134
A D G TPLHLAA G++ ++ LL + A+VN+QD G +
Sbjct: 75 ARDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKT 115
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 210 GRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGAD 269
G P+ AA G + + L+K GA+V A D G T LH AA+ GH E +E L+ GAD
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAATVGHLEIVEVLLE-YGAD 105
Query: 270 VDVIDTNGCSALFYAVTLGHADATTLL 296
V+ D G +A ++ G+ D +L
Sbjct: 106 VNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 62/157 (39%), Gaps = 45/157 (28%)
Query: 109 AGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYP 168
AG + L+A+ A+VN+ D+ G + +H A G +E +E +L GA+ + DI G P
Sbjct: 24 AGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTP 83
Query: 169 IHYASQMCGHASEMGNDVRVGLAXXXXXXXXXXXXXXXXXXGRQPILWAASAGSSDAILA 228
+H AA+ G + +
Sbjct: 84 LHL---------------------------------------------AATVGHLEIVEV 98
Query: 229 LVKAGANVEAHDKDGLTALHCAASRGHRECLETLITL 265
L++ GA+V A DK G TA + G+ + E L L
Sbjct: 99 LLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 135
Score = 31.6 bits (70), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 41/94 (43%), Gaps = 4/94 (4%)
Query: 27 NTME--GATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETI 84
N M+ G T L AA++G E+ +L V RD +T LH A L E +
Sbjct: 41 NAMDDAGVTPLHLAAKRGH-LEIVEVLLKHGADVNARDIWGRTPLHLAATVGHLEIVEVL 99
Query: 85 LEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTL 118
LE D + A D+ G T ++ GN L L
Sbjct: 100 LEYGAD-VNAQDKFGKTAFDISIDNGNEDLAEIL 132
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 76/132 (57%), Gaps = 2/132 (1%)
Query: 34 SLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIE 93
L+ AA+ G+D EV+ ++A+ + V D + KT LH A L E +L+ D +
Sbjct: 17 KLLEAARAGQDDEVRILMANGAD-VNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGAD-VN 74
Query: 94 AADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLS 153
AAD+ G TPLHLAA+ G++ ++ LL + A+VN+ D G + +H A G +E +E +L
Sbjct: 75 AADKMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLK 134
Query: 154 AGAEPSTPDIHG 165
GA+ + D G
Sbjct: 135 YGADVNAQDKFG 146
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 45/103 (43%), Positives = 60/103 (58%), Gaps = 1/103 (0%)
Query: 210 GRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGAD 269
G+ P+ AA G + + L+K GA+V A DK G T LH AA GH E +E L+ GAD
Sbjct: 47 GKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMGDTPLHLAALYGHLEIVEVLLK-NGAD 105
Query: 270 VDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
V+ DT G + L A GH + +LL+YGA N QD+ G+T
Sbjct: 106 VNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVNAQDKFGKT 148
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 76/174 (43%), Gaps = 45/174 (25%)
Query: 92 IEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETV 151
+ A D+ G TPLHLAAI G++ ++ LL H A+VN+ D G + +H A + G +E +E +
Sbjct: 40 VNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMGDTPLHLAALYGHLEIVEVL 99
Query: 152 LSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAXXXXXXXXXXXXXXXXXXGR 211
L GA+ + D +G P+H
Sbjct: 100 LKNGADVNATDTYGFTPLH----------------------------------------- 118
Query: 212 QPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITL 265
AA AG + + L+K GA+V A DK G TA + G+ + E L L
Sbjct: 119 ----LAADAGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 84/191 (43%), Gaps = 46/191 (24%)
Query: 106 AAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHG 165
AA AG + L+A+ A+VN++D+ G + +H A + G +E +E +L GA+ + D G
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMG 80
Query: 166 GYPIHYASQMCGHASEMGNDVRVGLAXXXXXXXXXXXXXXXXXXGRQPILWAASAGSSDA 225
P+H A+ + GH +
Sbjct: 81 DTPLHLAA-LYGHL--------------------------------------------EI 95
Query: 226 ILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAV 285
+ L+K GA+V A D G T LH AA GH E +E L+ GADV+ D G +A ++
Sbjct: 96 VEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLK-YGADVNAQDKFGKTAFDISI 154
Query: 286 TLGHADATTLL 296
G+ D +L
Sbjct: 155 DNGNEDLAEIL 165
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 54/101 (53%), Gaps = 1/101 (0%)
Query: 212 QPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVD 271
+ +L AA AG D + L+ GA+V A D G T LH AA +GH E +E L+ GADV+
Sbjct: 16 KKLLEAARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLK-HGADVN 74
Query: 272 VIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
D G + L A GH + +LL+ GA N D G T
Sbjct: 75 AADKMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFT 115
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 57/103 (55%), Gaps = 1/103 (0%)
Query: 210 GRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGAD 269
G+ P+ AA G + + L+ GA+ A D DG T LH AA GH+E ++ L++ GAD
Sbjct: 37 GKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLS-QGAD 95
Query: 270 VDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
+ D++G + L A GH + LLL GA PN D GRT
Sbjct: 96 PNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNTSDSDGRT 138
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 59/99 (59%), Gaps = 1/99 (1%)
Query: 214 ILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVI 273
++ AA G+ D + L++ GA+V A D DG T LH AA GH+E ++ L++ GAD +
Sbjct: 8 LIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLS-QGADPNAK 66
Query: 274 DTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
D++G + L A GH + LLL GA PN +D G+T
Sbjct: 67 DSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKT 105
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 84/196 (42%), Gaps = 46/196 (23%)
Query: 106 AAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHG 165
AA GN + LL + A+VN+ D++G + +H A G E ++ +LS GA+P+ D G
Sbjct: 11 AAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDG 70
Query: 166 GYPIHYASQMCGHASEMGNDVRVGLAXXXXXXXXXXXXXXXXXXGRQPILWAASAGSSDA 225
P+H AA G +
Sbjct: 71 KTPLHL---------------------------------------------AAENGHKEV 85
Query: 226 ILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAV 285
+ L+ GA+ A D DG T LH AA GH+E ++ L++ GAD + D++G + L A
Sbjct: 86 VKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLS-QGADPNTSDSDGRTPLDLAR 144
Query: 286 TLGHADATTLLLQYGA 301
G+ + LL + G
Sbjct: 145 EHGNEEVVKLLEKQGG 160
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 63/107 (58%), Gaps = 2/107 (1%)
Query: 72 CAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNE 131
AEN + +LE D + A+D DG TPLHLAA G+ ++ LL+ A+ N++D++
Sbjct: 11 AAENGNKDRVKDLLENGAD-VNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSD 69
Query: 132 GHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGH 178
G + +H A G E ++ +LS GA+P+ D G P+H A++ GH
Sbjct: 70 GKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAE-NGH 115
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 65/129 (50%), Gaps = 6/129 (4%)
Query: 30 EGATSLMYAAQQGKDAEVKAILA--SRPNAVRERDRTRKTVLHYCAENTILSCAETILEV 87
+G T L AA+ G VK +L+ + PNA +D KT LH AEN + +L
Sbjct: 36 DGKTPLHLAAENGHKEVVKLLLSQGADPNA---KDSDGKTPLHLAAENGHKEVVKLLLSQ 92
Query: 88 APDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEA 147
D A D DG TPLHLAA G+ ++ LL+ A+ N+ D++G + + A G E
Sbjct: 93 GAD-PNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNTSDSDGRTPLDLAREHGNEEV 151
Query: 148 LETVLSAGA 156
++ + G
Sbjct: 152 VKLLEKQGG 160
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/103 (43%), Positives = 59/103 (57%), Gaps = 1/103 (0%)
Query: 210 GRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGAD 269
G P+ AA G + + L+K GA+V A D G T LH AA RGH E +E L+ GAD
Sbjct: 47 GDTPLHLAARVGHLEIVEVLLKNGADVNALDFSGSTPLHLAAKRGHLEIVEVLLK-YGAD 105
Query: 270 VDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
V+ DT G + L A GH + +LL+YGA N QD+ G+T
Sbjct: 106 VNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNAQDKFGKT 148
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 71/132 (53%), Gaps = 2/132 (1%)
Query: 34 SLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIE 93
L+ AA+ G+D EV+ ++A+ + V D T LH A L E +L+ D +
Sbjct: 17 KLLEAARAGQDDEVRILMANGAD-VNAEDTYGDTPLHLAARVGHLEIVEVLLKNGAD-VN 74
Query: 94 AADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLS 153
A D G TPLHLAA G++ ++ LL + A+VN+ D G + +H A G +E +E +L
Sbjct: 75 ALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLK 134
Query: 154 AGAEPSTPDIHG 165
GA+ + D G
Sbjct: 135 YGADVNAQDKFG 146
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/101 (41%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Query: 212 QPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVD 271
+ +L AA AG D + L+ GA+V A D G T LH AA GH E +E L+ GADV+
Sbjct: 16 KKLLEAARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLK-NGADVN 74
Query: 272 VIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
+D +G + L A GH + +LL+YGA N D G T
Sbjct: 75 ALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGST 115
Score = 64.3 bits (155), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 80/191 (41%), Gaps = 46/191 (24%)
Query: 106 AAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHG 165
AA AG + L+A+ A+VN++D G + +H A G +E +E +L GA+ + D G
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSG 80
Query: 166 GYPIHYASQMCGHASEMGNDVRVGLAXXXXXXXXXXXXXXXXXXGRQPILWAASAGSSDA 225
P+H AA G +
Sbjct: 81 STPLH---------------------------------------------LAAKRGHLEI 95
Query: 226 ILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAV 285
+ L+K GA+V A D G T LH AA GH E +E L+ GADV+ D G +A ++
Sbjct: 96 VEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLK-YGADVNAQDKFGKTAFDISI 154
Query: 286 TLGHADATTLL 296
G+ D +L
Sbjct: 155 DNGNEDLAEIL 165
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 70/171 (40%), Gaps = 45/171 (26%)
Query: 92 IEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETV 151
+ A D G TPLHLAA G++ ++ LL + A+VN+ D G + +H A G +E +E +
Sbjct: 40 VNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSGSTPLHLAAKRGHLEIVEVL 99
Query: 152 LSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAXXXXXXXXXXXXXXXXXXGR 211
L GA+ + D G P+H
Sbjct: 100 LKYGADVNADDTIGSTPLH----------------------------------------- 118
Query: 212 QPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETL 262
AA G + + L+K GA+V A DK G TA + G+ + E L
Sbjct: 119 ----LAADTGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 74/132 (56%), Gaps = 2/132 (1%)
Query: 34 SLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIE 93
L+ AA+ G+D EV+ ++A+ + V D T LH A+ L E +L+ D +
Sbjct: 17 KLLEAARAGQDDEVRILMANGAD-VNATDWLGHTPLHLAAKTGHLEIVEVLLKYGAD-VN 74
Query: 94 AADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLS 153
A D G TPLHLAA G++ ++ LL H A+VN++D EG + +H A G +E +E +L
Sbjct: 75 AWDNYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLK 134
Query: 154 AGAEPSTPDIHG 165
GA+ + D G
Sbjct: 135 YGADVNAQDKFG 146
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 57/103 (55%), Gaps = 1/103 (0%)
Query: 210 GRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGAD 269
G P+ AA G + + L+K GA+V A D G T LH AA GH E +E L+ GAD
Sbjct: 47 GHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYGATPLHLAADNGHLEIVEVLLK-HGAD 105
Query: 270 VDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
V+ D G + L A GH + +LL+YGA N QD+ G+T
Sbjct: 106 VNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDKFGKT 148
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 82/191 (42%), Gaps = 46/191 (24%)
Query: 106 AAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHG 165
AA AG + L+A+ A+VN+ D GH+ +H A G +E +E +L GA+ + D +G
Sbjct: 21 AARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYG 80
Query: 166 GYPIHYASQMCGHASEMGNDVRVGLAXXXXXXXXXXXXXXXXXXGRQPILWAASAGSSDA 225
P+H AA G +
Sbjct: 81 ATPLHL---------------------------------------------AADNGHLEI 95
Query: 226 ILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAV 285
+ L+K GA+V A D +G T LH AA GH E +E L+ GADV+ D G +A ++
Sbjct: 96 VEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLK-YGADVNAQDKFGKTAFDISI 154
Query: 286 TLGHADATTLL 296
G+ D +L
Sbjct: 155 DNGNEDLAEIL 165
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Query: 212 QPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVD 271
+ +L AA AG D + L+ GA+V A D G T LH AA GH E +E L+ GADV+
Sbjct: 16 KKLLEAARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLK-YGADVN 74
Query: 272 VIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
D G + L A GH + +LL++GA N +D +G T
Sbjct: 75 AWDNYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFT 115
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 73/174 (41%), Gaps = 45/174 (25%)
Query: 92 IEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETV 151
+ A D G+TPLHLAA G++ ++ LL + A+VN+ DN G + +H A G +E +E +
Sbjct: 40 VNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYGATPLHLAADNGHLEIVEVL 99
Query: 152 LSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAXXXXXXXXXXXXXXXXXXGR 211
L GA+ + D G P+H
Sbjct: 100 LKHGADVNAKDYEGFTPLHL---------------------------------------- 119
Query: 212 QPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITL 265
AA G + + L+K GA+V A DK G TA + G+ + E L L
Sbjct: 120 -----AAYDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 77/132 (58%), Gaps = 2/132 (1%)
Query: 34 SLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIE 93
L+ AA+ G+D EV+ ++A+ + V D T T LH A + L E +L+ D ++
Sbjct: 17 KLLEAARAGQDDEVRILIANGAD-VNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGAD-VD 74
Query: 94 AADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLS 153
AAD G+TPLHLAA+ G++ ++ LL + A+VN+ D G + +H A G +E +E +L
Sbjct: 75 AADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLK 134
Query: 154 AGAEPSTPDIHG 165
GA+ + D G
Sbjct: 135 YGADVNAQDKFG 146
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 59/103 (57%), Gaps = 1/103 (0%)
Query: 210 GRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGAD 269
G P+ AA +G + + L+K GA+V+A D G T LH AA GH E +E L+ GAD
Sbjct: 47 GLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYGFTPLHLAAMTGHLEIVEVLLK-YGAD 105
Query: 270 VDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
V+ D G + L A GH + +LL+YGA N QD+ G+T
Sbjct: 106 VNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQDKFGKT 148
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/101 (43%), Positives = 55/101 (54%), Gaps = 1/101 (0%)
Query: 212 QPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVD 271
+ +L AA AG D + L+ GA+V A D GLT LH AA GH E +E L+ GADVD
Sbjct: 16 KKLLEAARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLK-HGADVD 74
Query: 272 VIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
D G + L A GH + +LL+YGA N D G T
Sbjct: 75 AADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGST 115
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 82/186 (44%), Gaps = 46/186 (24%)
Query: 106 AAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHG 165
AA AG + L+A+ A+VN+ DN G + +H A V G +E +E +L GA+ D++G
Sbjct: 21 AARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYG 80
Query: 166 GYPIHYASQMCGHASEMGNDVRVGLAXXXXXXXXXXXXXXXXXXGRQPILWAASAGSSDA 225
P+H A+ M GH +
Sbjct: 81 FTPLHLAA-MTGHL--------------------------------------------EI 95
Query: 226 ILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAV 285
+ L+K GA+V A D G T LH AA GH E +E L+ GADV+ D G +A ++
Sbjct: 96 VEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLK-YGADVNAQDKFGKTAFDISI 154
Query: 286 TLGHAD 291
G+ D
Sbjct: 155 DNGNED 160
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 52/83 (62%)
Query: 92 IEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETV 151
+ A D G TPLHLAA++G++ ++ LL H A+V++ D G + +H A + G +E +E +
Sbjct: 40 VNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYGFTPLHLAAMTGHLEIVEVL 99
Query: 152 LSAGAEPSTPDIHGGYPIHYASQ 174
L GA+ + D+ G P+H A+
Sbjct: 100 LKYGADVNAFDMTGSTPLHLAAD 122
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 74.7 bits (182), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 58/101 (57%), Gaps = 1/101 (0%)
Query: 212 QPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVD 271
+ +L AA AG D + L+ GA+V A DK GLT LH AA H E +E L+ GADV+
Sbjct: 16 KKLLEAARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLK-NGADVN 74
Query: 272 VIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
ID G + L GH + +LL++GA N QD+ G+T
Sbjct: 75 AIDAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKT 115
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 58/101 (57%), Gaps = 2/101 (1%)
Query: 34 SLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIE 93
L+ AA+ G+D EV+ ++A+ + V D+ T LH A N L E +L+ D +
Sbjct: 17 KLLEAARAGQDDEVRILMANGAD-VNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGAD-VN 74
Query: 94 AADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHS 134
A D G TPLHL A+ G++ ++ LL H A+VN+QD G +
Sbjct: 75 AIDAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKT 115
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 44/74 (59%)
Query: 92 IEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETV 151
+ A D+ G TPLHLAA+ ++ ++ LL + A+VN+ D G + +H + G +E +E +
Sbjct: 40 VNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGETPLHLVAMYGHLEIVEVL 99
Query: 152 LSAGAEPSTPDIHG 165
L GA+ + D G
Sbjct: 100 LKHGADVNAQDKFG 113
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 210 GRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGAD 269
G P+ AA + + L+K GA+V A D G T LH A GH E +E L+ GAD
Sbjct: 47 GLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGETPLHLVAMYGHLEIVEVLLK-HGAD 105
Query: 270 VDVIDTNGCSALFYAVTLGHADATTLL 296
V+ D G +A ++ G+ D +L
Sbjct: 106 VNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 63/160 (39%), Gaps = 45/160 (28%)
Query: 106 AAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHG 165
AA AG + L+A+ A+VN++D G + +H A + +E +E +L GA+ + D G
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIG 80
Query: 166 GYPIHYASQMCGHASEMGNDVRVGLAXXXXXXXXXXXXXXXXXXGRQPILWAASAGSSDA 225
P+H + M GH +
Sbjct: 81 ETPLHLVA-MYGHL--------------------------------------------EI 95
Query: 226 ILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITL 265
+ L+K GA+V A DK G TA + G+ + E L L
Sbjct: 96 VEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 135
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 74.7 bits (182), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 74/132 (56%), Gaps = 2/132 (1%)
Query: 34 SLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIE 93
L+ AA+ G+D EV+ ++A+ + V D + T LH A L E +L+ D +
Sbjct: 17 KLLEAARAGQDDEVRILMANGAD-VNATDASGLTPLHLAATYGHLEIVEVLLKHGAD-VN 74
Query: 94 AADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLS 153
A D G TPLHLAA+ G++ ++ LL H A+VN+ D G + +H A + G +E +E +L
Sbjct: 75 AIDIXGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLK 134
Query: 154 AGAEPSTPDIHG 165
GA+ + D G
Sbjct: 135 HGADVNAQDKFG 146
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 58/101 (57%), Gaps = 1/101 (0%)
Query: 212 QPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVD 271
+ +L AA AG D + L+ GA+V A D GLT LH AA+ GH E +E L+ GADV+
Sbjct: 16 KKLLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLK-HGADVN 74
Query: 272 VIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
ID G + L A +GH + +LL++GA N D G T
Sbjct: 75 AIDIXGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDT 115
Score = 71.6 bits (174), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 61/103 (59%), Gaps = 1/103 (0%)
Query: 210 GRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGAD 269
G P+ AA+ G + + L+K GA+V A D G T LH AA GH E +E L+ GAD
Sbjct: 47 GLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXGSTPLHLAALIGHLEIVEVLLK-HGAD 105
Query: 270 VDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
V+ +DT G + L A +GH + +LL++GA N QD+ G+T
Sbjct: 106 VNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKT 148
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 73/174 (41%), Gaps = 45/174 (25%)
Query: 92 IEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETV 151
+ A D G TPLHLAA G++ ++ LL H A+VN+ D G + +H A + G +E +E +
Sbjct: 40 VNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXGSTPLHLAALIGHLEIVEVL 99
Query: 152 LSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAXXXXXXXXXXXXXXXXXXGR 211
L GA+ + D G P+H A+ M
Sbjct: 100 LKHGADVNAVDTWGDTPLHLAAIM------------------------------------ 123
Query: 212 QPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITL 265
G + + L+K GA+V A DK G TA + G+ + E L L
Sbjct: 124 ---------GHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 82/191 (42%), Gaps = 46/191 (24%)
Query: 106 AAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHG 165
AA AG + L+A+ A+VN+ D G + +H A G +E +E +L GA+ + DI G
Sbjct: 21 AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXG 80
Query: 166 GYPIHYASQMCGHASEMGNDVRVGLAXXXXXXXXXXXXXXXXXXGRQPILWAASAGSSDA 225
P+H A+ + GH +
Sbjct: 81 STPLHLAA-LIGHL--------------------------------------------EI 95
Query: 226 ILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAV 285
+ L+K GA+V A D G T LH AA GH E +E L+ GADV+ D G +A ++
Sbjct: 96 VEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLK-HGADVNAQDKFGKTAFDISI 154
Query: 286 TLGHADATTLL 296
G+ D +L
Sbjct: 155 DNGNEDLAEIL 165
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 74.3 bits (181), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 74/132 (56%), Gaps = 2/132 (1%)
Query: 34 SLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIE 93
L+ AA+ G+D EV+ ++A+ + V RD T T LH A L E +L+ D +
Sbjct: 17 KLLEAARAGQDDEVRILMANGAD-VNARDFTGWTPLHLAAHFGHLEIVEVLLKNGAD-VN 74
Query: 94 AADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLS 153
A D G TPLHLAA G++ ++ LL + A+VN+ D+ G + +H A G +E +E +L
Sbjct: 75 AKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLK 134
Query: 154 AGAEPSTPDIHG 165
GA+ + D G
Sbjct: 135 NGADVNAQDKFG 146
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 60/103 (58%), Gaps = 1/103 (0%)
Query: 210 GRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGAD 269
G P+ AA G + + L+K GA+V A D G+T LH AA RGH E +E L+ GAD
Sbjct: 47 GWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLGVTPLHLAARRGHLEIVEVLLK-NGAD 105
Query: 270 VDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
V+ D++G + L A GH + +LL+ GA N QD+ G+T
Sbjct: 106 VNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDKFGKT 148
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 81/191 (42%), Gaps = 46/191 (24%)
Query: 106 AAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHG 165
AA AG + L+A+ A+VN++D G + +H A G +E +E +L GA+ + D G
Sbjct: 21 AARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLG 80
Query: 166 GYPIHYASQMCGHASEMGNDVRVGLAXXXXXXXXXXXXXXXXXXGRQPILWAASAGSSDA 225
P+H AA G +
Sbjct: 81 VTPLHL---------------------------------------------AARRGHLEI 95
Query: 226 ILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAV 285
+ L+K GA+V A D G T LH AA RGH E +E L+ GADV+ D G +A ++
Sbjct: 96 VEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLK-NGADVNAQDKFGKTAFDISI 154
Query: 286 TLGHADATTLL 296
G+ D +L
Sbjct: 155 DNGNEDLAEIL 165
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 75/174 (43%), Gaps = 45/174 (25%)
Query: 92 IEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETV 151
+ A D G+TPLHLAA G++ ++ LL + A+VN++D+ G + +H A G +E +E +
Sbjct: 40 VNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLGVTPLHLAARRGHLEIVEVL 99
Query: 152 LSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAXXXXXXXXXXXXXXXXXXGR 211
L GA+ + D HG P+H
Sbjct: 100 LKNGADVNASDSHGFTPLHL---------------------------------------- 119
Query: 212 QPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITL 265
AA G + + L+K GA+V A DK G TA + G+ + E L L
Sbjct: 120 -----AAKRGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 54/101 (53%), Gaps = 1/101 (0%)
Query: 212 QPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVD 271
+ +L AA AG D + L+ GA+V A D G T LH AA GH E +E L+ GADV+
Sbjct: 16 KKLLEAARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLK-NGADVN 74
Query: 272 VIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
D+ G + L A GH + +LL+ GA N D G T
Sbjct: 75 AKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFT 115
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 61/101 (60%), Gaps = 1/101 (0%)
Query: 212 QPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVD 271
+ +L AA AG D + L+ GA+V A D+ GLT L+ A + GH E +E L+ GADV+
Sbjct: 16 KKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLK-NGADVN 74
Query: 272 VIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
+D G + L A +GH + +LL++GA N QD+ G+T
Sbjct: 75 AVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKT 115
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 57/101 (56%), Gaps = 2/101 (1%)
Query: 34 SLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIE 93
L+ AA+ G+D EV+ ++A+ + V +D T L+ + L E +L+ D +
Sbjct: 17 KLLEAARAGQDDEVRILMANGAD-VNAKDEYGLTPLYLATAHGHLEIVEVLLKNGAD-VN 74
Query: 94 AADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHS 134
A D G+TPLHLAA G++ + LL H A+VN+QD G +
Sbjct: 75 AVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKT 115
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 42/74 (56%)
Query: 92 IEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETV 151
+ A DE G TPL+LA G++ ++ LL + A+VN+ D G + +H A G +E E +
Sbjct: 40 VNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVL 99
Query: 152 LSAGAEPSTPDIHG 165
L GA+ + D G
Sbjct: 100 LKHGADVNAQDKFG 113
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 210 GRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGAD 269
G P+ A + G + + L+K GA+V A D G T LH AA GH E E L+ GAD
Sbjct: 47 GLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLK-HGAD 105
Query: 270 VDVIDTNGCSALFYAVTLGHADATTLL 296
V+ D G +A ++ G+ D +L
Sbjct: 106 VNAQDKFGKTAFDISIGNGNEDLAEIL 132
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 106 AAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHG 165
AA AG + L+A+ A+VN++D G + ++ AT G +E +E +L GA+ + D G
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIG 80
Query: 166 GYPIHYASQMCGH 178
P+H A+ GH
Sbjct: 81 FTPLHLAA-FIGH 92
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/101 (44%), Positives = 58/101 (57%), Gaps = 1/101 (0%)
Query: 212 QPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVD 271
+ +L AA AG D + L+ GA+V AHD G T LH AA GH E +E L+ GADV+
Sbjct: 16 KKLLEAARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLK-HGADVN 74
Query: 272 VIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
DT+G + L A GH + +LL+YGA N QD G T
Sbjct: 75 ARDTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLT 115
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 58/103 (56%), Gaps = 1/103 (0%)
Query: 210 GRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGAD 269
G P+ AA G + + L+K GA+V A D DG T LH AA GH E +E L+ GAD
Sbjct: 47 GSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDGWTPLHLAADNGHLEIVEVLLK-YGAD 105
Query: 270 VDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
V+ D G + L A GH + +LL++GA N QD+ G+T
Sbjct: 106 VNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNAQDKFGKT 148
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 73/132 (55%), Gaps = 2/132 (1%)
Query: 34 SLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIE 93
L+ AA+ G+D EV+ ++A+ + V D T LH A E +L+ D +
Sbjct: 17 KLLEAARAGQDDEVRILMANGAD-VNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGAD-VN 74
Query: 94 AADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLS 153
A D DG+TPLHLAA G++ ++ LL + A+VN+QD G + +H A G +E +E +L
Sbjct: 75 ARDTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLK 134
Query: 154 AGAEPSTPDIHG 165
GA+ + D G
Sbjct: 135 HGADVNAQDKFG 146
Score = 67.8 bits (164), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 82/191 (42%), Gaps = 46/191 (24%)
Query: 106 AAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHG 165
AA AG + L+A+ A+VN+ D++G + +H A G E +E +L GA+ + D G
Sbjct: 21 AARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDG 80
Query: 166 GYPIHYASQMCGHASEMGNDVRVGLAXXXXXXXXXXXXXXXXXXGRQPILWAASAGSSDA 225
P+H AA G +
Sbjct: 81 WTPLHL---------------------------------------------AADNGHLEI 95
Query: 226 ILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAV 285
+ L+K GA+V A D GLT LH AA RGH E +E L+ GADV+ D G +A ++
Sbjct: 96 VEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLK-HGADVNAQDKFGKTAFDISI 154
Query: 286 TLGHADATTLL 296
G+ D +L
Sbjct: 155 DNGNEDLAEIL 165
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 74/174 (42%), Gaps = 45/174 (25%)
Query: 92 IEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETV 151
+ A D+ G TPLHLAA G+ ++ LL H A+VN++D +G + +H A G +E +E +
Sbjct: 40 VNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDGWTPLHLAADNGHLEIVEVL 99
Query: 152 LSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAXXXXXXXXXXXXXXXXXXGR 211
L GA+ + D +G P+H
Sbjct: 100 LKYGADVNAQDAYGLTPLHL---------------------------------------- 119
Query: 212 QPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITL 265
AA G + + L+K GA+V A DK G TA + G+ + E L L
Sbjct: 120 -----AADRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 74/132 (56%), Gaps = 2/132 (1%)
Query: 34 SLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIE 93
L+ AA+ G+D EV+ ++A+ + V D + T LH A L E +L+ D +
Sbjct: 17 KLLEAARAGQDDEVRILMANGAD-VNATDASGLTPLHLAATYGHLEIVEVLLKHGAD-VN 74
Query: 94 AADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLS 153
A D G TPLHLAA+ G++ ++ LL H A+VN+ D G + +H A + G +E +E +L
Sbjct: 75 AIDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLK 134
Query: 154 AGAEPSTPDIHG 165
GA+ + D G
Sbjct: 135 HGADVNAQDKFG 146
Score = 71.6 bits (174), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 58/101 (57%), Gaps = 1/101 (0%)
Query: 212 QPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVD 271
+ +L AA AG D + L+ GA+V A D GLT LH AA+ GH E +E L+ GADV+
Sbjct: 16 KKLLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLK-HGADVN 74
Query: 272 VIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
ID G + L A +GH + +LL++GA N D G T
Sbjct: 75 AIDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDT 115
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 61/103 (59%), Gaps = 1/103 (0%)
Query: 210 GRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGAD 269
G P+ AA+ G + + L+K GA+V A D G T LH AA GH E +E L+ GAD
Sbjct: 47 GLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMGSTPLHLAALIGHLEIVEVLLK-HGAD 105
Query: 270 VDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
V+ +DT G + L A +GH + +LL++GA N QD+ G+T
Sbjct: 106 VNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKT 148
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 73/174 (41%), Gaps = 45/174 (25%)
Query: 92 IEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETV 151
+ A D G TPLHLAA G++ ++ LL H A+VN+ D G + +H A + G +E +E +
Sbjct: 40 VNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMGSTPLHLAALIGHLEIVEVL 99
Query: 152 LSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAXXXXXXXXXXXXXXXXXXGR 211
L GA+ + D G P+H A+ M
Sbjct: 100 LKHGADVNAVDTWGDTPLHLAAIM------------------------------------ 123
Query: 212 QPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITL 265
G + + L+K GA+V A DK G TA + G+ + E L L
Sbjct: 124 ---------GHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 82/191 (42%), Gaps = 46/191 (24%)
Query: 106 AAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHG 165
AA AG + L+A+ A+VN+ D G + +H A G +E +E +L GA+ + DI G
Sbjct: 21 AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMG 80
Query: 166 GYPIHYASQMCGHASEMGNDVRVGLAXXXXXXXXXXXXXXXXXXGRQPILWAASAGSSDA 225
P+H A+ + GH +
Sbjct: 81 STPLHLAA-LIGHL--------------------------------------------EI 95
Query: 226 ILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAV 285
+ L+K GA+V A D G T LH AA GH E +E L+ GADV+ D G +A ++
Sbjct: 96 VEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLK-HGADVNAQDKFGKTAFDISI 154
Query: 286 TLGHADATTLL 296
G+ D +L
Sbjct: 155 DNGNEDLAEIL 165
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 59/103 (57%), Gaps = 1/103 (0%)
Query: 210 GRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGAD 269
G P+ AA G + + L+K GA+V A+D G T LH AA GH E +E L+ GAD
Sbjct: 47 GWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLK-NGAD 105
Query: 270 VDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
V+ D NG + L A GH + +LL+YGA N QD+ G+T
Sbjct: 106 VNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQDKFGKT 148
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 73/132 (55%), Gaps = 2/132 (1%)
Query: 34 SLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIE 93
L+ AA+ G+D EV+ ++A+ + V D T LH A L E +L+ D +
Sbjct: 17 KLLEAARAGRDDEVRILMANGAD-VNAADVVGWTPLHLAAYWGHLEIVEVLLKNGAD-VN 74
Query: 94 AADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLS 153
A D G TPLHLAA G++ ++ LL + A+VN++D+ G + +H A G +E +E +L
Sbjct: 75 AYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLK 134
Query: 154 AGAEPSTPDIHG 165
GA+ + D G
Sbjct: 135 YGADVNAQDKFG 146
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/101 (41%), Positives = 55/101 (54%), Gaps = 1/101 (0%)
Query: 212 QPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVD 271
+ +L AA AG D + L+ GA+V A D G T LH AA GH E +E L+ GADV+
Sbjct: 16 KKLLEAARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLK-NGADVN 74
Query: 272 VIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
DT G + L A GH + +LL+ GA N +D G T
Sbjct: 75 AYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGIT 115
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 76/174 (43%), Gaps = 45/174 (25%)
Query: 92 IEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETV 151
+ AAD G+TPLHLAA G++ ++ LL + A+VN+ D G + +H A G +E +E +
Sbjct: 40 VNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLGSTPLHLAAHFGHLEIVEVL 99
Query: 152 LSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAXXXXXXXXXXXXXXXXXXGR 211
L GA+ + D +G P+H
Sbjct: 100 LKNGADVNAKDDNGITPLHL---------------------------------------- 119
Query: 212 QPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITL 265
AA+ G + + L+K GA+V A DK G TA + + G+ + E L L
Sbjct: 120 -----AANRGHLEIVEVLLKYGADVNAQDKFGKTAFDISINNGNEDLAEILQKL 168
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 82/191 (42%), Gaps = 46/191 (24%)
Query: 106 AAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHG 165
AA AG + L+A+ A+VN+ D G + +H A G +E +E +L GA+ + D
Sbjct: 21 AARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYD--- 77
Query: 166 GYPIHYASQMCGHASEMGNDVRVGLAXXXXXXXXXXXXXXXXXXGRQPILWAASAGSSDA 225
G P+ AA G +
Sbjct: 78 ------------------------------------------TLGSTPLHLAAHFGHLEI 95
Query: 226 ILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAV 285
+ L+K GA+V A D +G+T LH AA+RGH E +E L+ GADV+ D G +A ++
Sbjct: 96 VEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLK-YGADVNAQDKFGKTAFDISI 154
Query: 286 TLGHADATTLL 296
G+ D +L
Sbjct: 155 NNGNEDLAEIL 165
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 98/227 (43%), Gaps = 59/227 (25%)
Query: 95 ADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQ--------DNEGHSVVHWATVCGEVE 146
ADEDG TPLH+A + GN+P +H L+ N+ Q +N + +H A +
Sbjct: 5 ADEDGDTPLHIAVVQGNLPAVHRLV----NLFQQGGRELDIYNNLRQTPLHLAVITTLPS 60
Query: 147 ALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAXXXXXXXXXXXXXXX 206
+ +++AGA P D HG H A C H S
Sbjct: 61 VVRLLVTAGASPMALDRHGQTAAHLA---CEHRSP------------------------- 92
Query: 207 XXXGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLC 266
+ +L +A+ G+ D +EA + DGLTALH A + EC ET+ L
Sbjct: 93 --TCLRALLDSAAPGTLD-----------LEARNYDGLTALHVAVN---TECQETVQLLL 136
Query: 267 --GADVDVID-TNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKG 310
GAD+D +D +G S L +AV LLLQ+GA N Q G
Sbjct: 137 ERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSG 183
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 53/107 (49%), Gaps = 2/107 (1%)
Query: 67 TVLHYCAENTILSCAETILEVAPDLIEAAD-EDGYTPLHLAAIAGNVPLIHTLLAHRANV 125
T LH + +LE D I+A D + G +PL A ++ ++ LL H ANV
Sbjct: 118 TALHVAVNTECQETVQLLLERGAD-IDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANV 176
Query: 126 NSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYA 172
N+Q G S +H A+ G + + T++ +GA+ S + H P+ A
Sbjct: 177 NAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVA 223
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 76/194 (39%), Gaps = 28/194 (14%)
Query: 101 TPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPST 160
TPLHLA I ++ L+ A+ + D G + H A L +L + A P T
Sbjct: 48 TPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAA-PGT 106
Query: 161 PDIH-----GGYPIHYASQM-CGHASEM----GNDVRVGLAXXXXXXXXXXXXXXXXXXG 210
D+ G +H A C ++ G D+ G
Sbjct: 107 LDLEARNYDGLTALHVAVNTECQETVQLLLERGADI----------------DAVDIKSG 150
Query: 211 RQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADV 270
R P++ A S + L++ GANV A G +ALH A+ RG + TL+ GAD
Sbjct: 151 RSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVR-SGADS 209
Query: 271 DVIDTNGCSALFYA 284
+ + + + L A
Sbjct: 210 SLKNCHNDTPLMVA 223
Score = 35.0 bits (79), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Query: 240 DKDGLTALHCAASRGHRECLETLITLC---GADVDVIDTNGCSALFYAVTLGHADATTLL 296
D+DG T LH A +G+ + L+ L G ++D+ + + L AV LL
Sbjct: 6 DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLL 65
Query: 297 LQYGATPNRQDRKGRT 312
+ GA+P DR G+T
Sbjct: 66 VTAGASPMALDRHGQT 81
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 59/101 (58%), Gaps = 1/101 (0%)
Query: 212 QPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVD 271
+ +L AA AG D + L+ GA+V A+D+ G T LH AA H E +E L+ GADV+
Sbjct: 16 KKLLEAARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLK-HGADVN 74
Query: 272 VIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
D +G + L A GH + +LL++GA N QD+ G+T
Sbjct: 75 AHDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKT 115
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 65/118 (55%), Gaps = 2/118 (1%)
Query: 34 SLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIE 93
L+ AA+ G+D EV+ ++A+ + V DR T LH A+ L E +L+ D +
Sbjct: 17 KLLEAARAGQDDEVRILMANGAD-VNANDRKGNTPLHLAADYDHLEIVEVLLKHGAD-VN 74
Query: 94 AADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETV 151
A D DG TPLHLAA+ G++ ++ LL H A+VN+QD G + + G + E +
Sbjct: 75 AHDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 45/74 (60%)
Query: 92 IEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETV 151
+ A D G TPLHLAA ++ ++ LL H A+VN+ DN+G + +H A + G +E +E +
Sbjct: 40 VNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGSTPLHLAALFGHLEIVEVL 99
Query: 152 LSAGAEPSTPDIHG 165
L GA+ + D G
Sbjct: 100 LKHGADVNAQDKFG 113
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 210 GRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGAD 269
G P+ AA + + L+K GA+V AHD DG T LH AA GH E +E L+ GAD
Sbjct: 47 GNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGSTPLHLAALFGHLEIVEVLLK-HGAD 105
Query: 270 VDVIDTNGCSALFYAVTLGHADATTLL 296
V+ D G +A ++ G+ D +L
Sbjct: 106 VNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 64/160 (40%), Gaps = 45/160 (28%)
Query: 106 AAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHG 165
AA AG + L+A+ A+VN+ D +G++ +H A +E +E +L GA+ + D G
Sbjct: 21 AARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDG 80
Query: 166 GYPIHYASQMCGHASEMGNDVRVGLAXXXXXXXXXXXXXXXXXXGRQPILWAASAGSSDA 225
P+H A+ + GH +
Sbjct: 81 STPLHLAA-LFGHL--------------------------------------------EI 95
Query: 226 ILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITL 265
+ L+K GA+V A DK G TA + G+ + E L L
Sbjct: 96 VEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 135
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/92 (43%), Positives = 54/92 (58%), Gaps = 1/92 (1%)
Query: 210 GRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGAD 269
GR P+ AA G + + L++AGA+V A DK+G T LH AA GH E ++ L+ GAD
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE-AGAD 60
Query: 270 VDVIDTNGCSALFYAVTLGHADATTLLLQYGA 301
V+ D NG + L A GH + LLL+ GA
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 54/91 (59%), Gaps = 1/91 (1%)
Query: 66 KTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANV 125
+T LH A N L + +LE D + A D++G TPLHLAA G++ ++ LL A+V
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 126 NSQDNEGHSVVHWATVCGEVEALETVLSAGA 156
N++D G + +H A G +E ++ +L AGA
Sbjct: 62 NAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 49/77 (63%)
Query: 98 DGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAE 157
+G TPLHLAA G++ ++ LL A+VN++D G + +H A G +E ++ +L AGA+
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 158 PSTPDIHGGYPIHYASQ 174
+ D +G P+H A++
Sbjct: 61 VNAKDKNGRTPLHLAAR 77
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 242 DGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGA 301
+G T LH AA GH E ++ L+ GADV+ D NG + L A GH + LLL+ GA
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLE-AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 302 TPNRQDRKGRT 312
N +D+ GRT
Sbjct: 60 DVNAKDKNGRT 70
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 49/89 (55%), Gaps = 2/89 (2%)
Query: 31 GATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPD 90
G T L AA+ G VK +L + + V +D+ +T LH A N L + +LE D
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 91 LIEAADEDGYTPLHLAAIAGNVPLIHTLL 119
+ A D++G TPLHLAA G++ ++ LL
Sbjct: 61 -VNAKDKNGRTPLHLAARNGHLEVVKLLL 88
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 31 GATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILE 86
G T L AA+ G VK +L + + V +D+ +T LH A N L + +LE
Sbjct: 35 GRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLE 89
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 91/215 (42%), Gaps = 20/215 (9%)
Query: 84 ILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCG 143
+LE D I A+ DG T LH A I NV ++ L+ + AN+N DNEG +H A CG
Sbjct: 59 LLERGAD-INYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCG 117
Query: 144 EVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAXXXXXXXXXXXX 203
++ E ++S GA + G P+ A + R G+
Sbjct: 118 YLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIM 177
Query: 204 XXXXXXGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLI 263
R W S +D H K G TALH AA++G+ E L+ LI
Sbjct: 178 L------RDARQWLNSGHINDV------------RHAKSGGTALHVAAAKGYTEVLKLLI 219
Query: 264 TLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQ 298
DV++ D +G + L A G +A +L++
Sbjct: 220 Q-ARYDVNIKDYDGWTPLHAAAHWGKEEACRILVE 253
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Query: 214 ILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVI 273
L A S+G ++ +L L++ GA++ + DGLTALH A + + ++ L+ GA+++
Sbjct: 44 FLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVE-NGANINQP 102
Query: 274 DTNGCSALFYAVTLGHADATTLLLQYGA 301
D G L A + G+ D L+ GA
Sbjct: 103 DNEGWIPLHAAASCGYLDIAEYLISQGA 130
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 64.3 bits (155), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 69/247 (27%), Positives = 96/247 (38%), Gaps = 48/247 (19%)
Query: 72 CAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVN---SQ 128
C EN E +L P L+ D+DG PLH + + LL+ NVN
Sbjct: 10 CMENEFFKVQE-LLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYP 68
Query: 129 DNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRV 188
D+ G + H A G LE V S P PD++ I C H +
Sbjct: 69 DDSGWTPFHIACSVGN---LEVVKSLYDRPLKPDLN---KITNQGVTCLHLA-------- 114
Query: 189 GLAXXXXXXXXXXXXXXXXXXGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALH 248
G++ W + L++ GA+V DK LH
Sbjct: 115 --------------------VGKK---WFEVSQ------FLIENGASVRIKDKFNQIPLH 145
Query: 249 CAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQ-YGATPNRQD 307
AAS G + +E L L + V+ D G + LF+A+ GH DA LL++ YGA + D
Sbjct: 146 RAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVD 205
Query: 308 RKGRTYE 314
KG E
Sbjct: 206 NKGAKAE 212
Score = 57.8 bits (138), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 57/256 (22%), Positives = 99/256 (38%), Gaps = 60/256 (23%)
Query: 35 LMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAE-------NTILSCAETILEV 87
L A + + +V+ +L S+P+ + ++D+ + LH+ + +LS E +
Sbjct: 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV--- 62
Query: 88 APDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAH--RANVNSQDNEGHSVVHWATVCGEV 145
+L + D+ G+TP H+A GN+ ++ +L + ++N N+G + +H A
Sbjct: 63 --NLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWF 120
Query: 146 EALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAXXXXXXXXXXXXXX 205
E + ++ GA D P+H
Sbjct: 121 EVSQFLIENGASVRIKDKFNQIPLHR---------------------------------- 146
Query: 206 XXXXGRQPILWAASAGSSDAILALVKAGAN-VEAHDKDGLTALHCAASRGHRECLETLIT 264
AAS GS I L G + V DK G T L A + GH + L+
Sbjct: 147 -----------AASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVE 195
Query: 265 LCGADVDVIDTNGCSA 280
GA+ D++D G A
Sbjct: 196 KYGAEYDLVDNKGAKA 211
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 64.3 bits (155), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 69/247 (27%), Positives = 96/247 (38%), Gaps = 48/247 (19%)
Query: 72 CAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVN---SQ 128
C EN E +L P L+ D+DG PLH + + LL+ NVN
Sbjct: 10 CMENEFFKVQE-LLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYP 68
Query: 129 DNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRV 188
D+ G + H A G LE V S P PD++ I C H +
Sbjct: 69 DDSGWTPFHIACSVGN---LEVVKSLYDRPLKPDLN---KITNQGVTCLHLA-------- 114
Query: 189 GLAXXXXXXXXXXXXXXXXXXGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALH 248
G++ W + L++ GA+V DK LH
Sbjct: 115 --------------------VGKK---WFEVSQ------FLIENGASVRIKDKFNQIPLH 145
Query: 249 CAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQ-YGATPNRQD 307
AAS G + +E L L + V+ D G + LF+A+ GH DA LL++ YGA + D
Sbjct: 146 RAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVD 205
Query: 308 RKGRTYE 314
KG E
Sbjct: 206 NKGAKAE 212
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/256 (22%), Positives = 99/256 (38%), Gaps = 60/256 (23%)
Query: 35 LMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAE-------NTILSCAETILEV 87
L A + + +V+ +L S+P+ + ++D+ + LH+ + +LS E +
Sbjct: 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV--- 62
Query: 88 APDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAH--RANVNSQDNEGHSVVHWATVCGEV 145
+L + D+ G+TP H+A GN+ ++ +L + ++N N+G + +H A
Sbjct: 63 --NLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWF 120
Query: 146 EALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAXXXXXXXXXXXXXX 205
E + ++ GA D P+H
Sbjct: 121 EVSQFLIENGASVRIKDKFNQIPLHR---------------------------------- 146
Query: 206 XXXXGRQPILWAASAGSSDAILALVKAGAN-VEAHDKDGLTALHCAASRGHRECLETLIT 264
AAS GS I L G + V DK G T L A + GH + L+
Sbjct: 147 -----------AASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVE 195
Query: 265 LCGADVDVIDTNGCSA 280
GA+ D++D G A
Sbjct: 196 KYGAEYDLVDNKGAKA 211
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 64.3 bits (155), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 69/247 (27%), Positives = 96/247 (38%), Gaps = 48/247 (19%)
Query: 72 CAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVN---SQ 128
C EN E +L P L+ D+DG PLH + + LL+ NVN
Sbjct: 10 CMENEFFKVQE-LLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYP 68
Query: 129 DNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRV 188
D+ G + H A G LE V S P PD++ I C H +
Sbjct: 69 DDSGWTPFHIACSVGN---LEVVKSLYDRPLKPDLN---KITNQGVTCLHLA-------- 114
Query: 189 GLAXXXXXXXXXXXXXXXXXXGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALH 248
G++ W + L++ GA+V DK LH
Sbjct: 115 --------------------VGKK---WFEVSQ------FLIENGASVRIKDKFNQIPLH 145
Query: 249 CAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQ-YGATPNRQD 307
AAS G + +E L L + V+ D G + LF+A+ GH DA LL++ YGA + D
Sbjct: 146 RAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVD 205
Query: 308 RKGRTYE 314
KG E
Sbjct: 206 NKGAKAE 212
Score = 57.4 bits (137), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 57/256 (22%), Positives = 99/256 (38%), Gaps = 60/256 (23%)
Query: 35 LMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAE-------NTILSCAETILEV 87
L A + + +V+ +L S+P+ + ++D+ + LH+ + +LS E +
Sbjct: 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV--- 62
Query: 88 APDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAH--RANVNSQDNEGHSVVHWATVCGEV 145
+L + D+ G+TP H+A GN+ ++ +L + ++N N+G + +H A
Sbjct: 63 --NLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWF 120
Query: 146 EALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAXXXXXXXXXXXXXX 205
E + ++ GA D P+H
Sbjct: 121 EVSQFLIENGASVRIKDKFNQIPLHR---------------------------------- 146
Query: 206 XXXXGRQPILWAASAGSSDAILALVKAGAN-VEAHDKDGLTALHCAASRGHRECLETLIT 264
AAS GS I L G + V DK G T L A + GH + L+
Sbjct: 147 -----------AASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVE 195
Query: 265 LCGADVDVIDTNGCSA 280
GA+ D++D G A
Sbjct: 196 KYGAEYDLVDNKGAKA 211
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 69/260 (26%), Positives = 103/260 (39%), Gaps = 61/260 (23%)
Query: 68 VLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNS 127
+L +N + + +LE ++ +E G+TPLH A ++ LL H A+
Sbjct: 28 LLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVL 87
Query: 128 QDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVR 187
+ G + A + G V+ L+ LS GA+ + D +G
Sbjct: 88 RKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYG---------------------- 125
Query: 188 VGLAXXXXXXXXXXXXXXXXXXGRQPILWAASAGSSDAILALVKAGANV----------E 237
+ AA G A+ L K GANV E
Sbjct: 126 -----------------------FTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQE 162
Query: 238 AHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADA----- 292
K G TAL AA +GH E L+ L+ GADV+ D G +AL +A+ L D+
Sbjct: 163 RLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHAL-LSSDDSDVEAI 221
Query: 293 TTLLLQYGATPNRQDRKGRT 312
T LLL +GA N + +G+T
Sbjct: 222 THLLLDHGADVNVRGERGKT 241
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 78/312 (25%), Positives = 122/312 (39%), Gaps = 51/312 (16%)
Query: 26 HNTMEGATS------------LMYAAQQGKDAE-VKAILASRPNAVRERDRTRKTVLHYC 72
+N EG TS L+ A Q +D + V+ +L N + + T LH
Sbjct: 7 NNPQEGPTSSSGRRAAVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNA 66
Query: 73 AENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEG 132
+ + E +L D + ++G TP LAAIAG+V L+ L+ A+VN D G
Sbjct: 67 VQMSREDIVELLLRHGADPV-LRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYG 125
Query: 133 HSVVHWATVCGEVEALETVLSAGA---------EPSTPDIHGGYPIHYASQMCGHAS--- 180
+ A V G+V+AL+ + GA E GG + GH
Sbjct: 126 FTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLK 185
Query: 181 ----EMGNDVRVGLAXXXXXXXXXXXXXXXXXXGRQPILWAASAGSSDAILA----LVKA 232
EMG DV GR ++ A + + A L+
Sbjct: 186 ILLDEMGADVNA-----------------CDNMGRNALIHALLSSDDSDVEAITHLLLDH 228
Query: 233 GANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADA 292
GA+V + G T L A + H ++ L+ +++ D++G +AL AV L
Sbjct: 229 GADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKI 288
Query: 293 TTLLLQYGATPN 304
LL + GA+ +
Sbjct: 289 AELLCKRGASTD 300
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 69/260 (26%), Positives = 103/260 (39%), Gaps = 61/260 (23%)
Query: 68 VLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNS 127
+L +N + + +LE ++ +E G+TPLH A ++ LL H A+
Sbjct: 8 LLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVL 67
Query: 128 QDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVR 187
+ G + A + G V+ L+ LS GA+ + D +G
Sbjct: 68 RKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYG---------------------- 105
Query: 188 VGLAXXXXXXXXXXXXXXXXXXGRQPILWAASAGSSDAILALVKAGANV----------E 237
+ AA G A+ L K GANV E
Sbjct: 106 -----------------------FTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQE 142
Query: 238 AHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADA----- 292
K G TAL AA +GH E L+ L+ GADV+ D G +AL +A+ L D+
Sbjct: 143 RLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHAL-LSSDDSDVEAI 201
Query: 293 TTLLLQYGATPNRQDRKGRT 312
T LLL +GA N + +G+T
Sbjct: 202 THLLLDHGADVNVRGERGKT 221
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 73/291 (25%), Positives = 116/291 (39%), Gaps = 39/291 (13%)
Query: 35 LMYAAQQGKDAE-VKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIE 93
L+ A Q +D + V+ +L N + + T LH + + E +L D +
Sbjct: 8 LLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPV- 66
Query: 94 AADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLS 153
++G TP LAAIAG+V L+ L+ A+VN D G + A V G+V+AL+ +
Sbjct: 67 LRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYK 126
Query: 154 AGA---------EPSTPDIHGGYPIHYASQMCGHAS-------EMGNDVRVGLAXXXXXX 197
GA E GG + GH EMG DV
Sbjct: 127 RGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVN---------- 176
Query: 198 XXXXXXXXXXXXGRQPILWAASAGSSDAILA----LVKAGANVEAHDKDGLTALHCAASR 253
GR ++ A + + A L+ GA+V + G T L A +
Sbjct: 177 -------ACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEK 229
Query: 254 GHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPN 304
H ++ L+ +++ D++G +AL AV L LL + GA+ +
Sbjct: 230 KHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTD 280
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 54/99 (54%)
Query: 211 RQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADV 270
R P++ AA +A+ L+KAGA V+ D +G T LH AA +GH E ++ L++ DV
Sbjct: 45 RTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDV 104
Query: 271 DVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRK 309
+ D G + + +A H D LLL G+ N +D +
Sbjct: 105 NCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNE 143
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 70/142 (49%), Gaps = 1/142 (0%)
Query: 33 TSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLI 92
T LM AA+ VK ++ + V +D T LH A+ + +L +
Sbjct: 46 TPLMEAAENNHLEAVKYLIKAGA-LVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDV 104
Query: 93 EAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVL 152
D+ G+TP+ A +V L+ LL+ +++N +DNE + +HWA G V+ E +L
Sbjct: 105 NCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILL 164
Query: 153 SAGAEPSTPDIHGGYPIHYASQ 174
+A + +IHG P+H A++
Sbjct: 165 AAKCDLHAVNIHGDSPLHIAAR 186
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 53/224 (23%), Positives = 102/224 (45%), Gaps = 16/224 (7%)
Query: 30 EGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAP 89
+ S ++AA + ++ +L + ++T L AEN L + +++ A
Sbjct: 9 QNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIK-AG 67
Query: 90 DLIEAADEDGYTPLHLAAIAGNVPLIHTLLAH-RANVNSQDNEGHSVVHWATVCGEVEAL 148
L++ D +G T LHLAA G+ ++ LL++ + +VN QD+ G + + WAT V+ +
Sbjct: 68 ALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLV 127
Query: 149 ETVLSAGAEPSTPDIHGGYPIHYAS-QMCGHASEMGNDVRVGLAXXXXXXXXXXXXXXXX 207
+ +LS G++ + D +H+A+ C +E+ + L
Sbjct: 128 KLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDL-------------HAVN 174
Query: 208 XXGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAA 251
G P+ AA D ++ + ++V +K+G T L CA+
Sbjct: 175 IHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCAS 218
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/216 (23%), Positives = 91/216 (42%), Gaps = 12/216 (5%)
Query: 97 EDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGA 156
++ +PLH AA AG+V + H L+ AN+++ + + + A +EA++ ++ AGA
Sbjct: 9 QNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGA 68
Query: 157 EPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAXXXXXXXXXXXXXXXXXXGRQPILW 216
D G +H A++ GH + + G G P++W
Sbjct: 69 LVDPKDAEGSTCLHLAAKK-GHYEVVQYLLSNG----------QMDVNCQDDGGWTPMIW 117
Query: 217 AASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTN 276
A D + L+ G+++ D + LH AA G + E L+ D+ ++ +
Sbjct: 118 ATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLA-AKCDLHAVNIH 176
Query: 277 GCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
G S L A D L L + ++++G T
Sbjct: 177 GDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGET 212
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 60/128 (46%), Gaps = 3/128 (2%)
Query: 18 NGSFDKKVHNTMEGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTI 77
NG D + +G + M A + K ++ +L S+ + + RD LH+ A +
Sbjct: 99 NGQMDVNCQD--DGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGC 156
Query: 78 LSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVH 137
+ AE +L DL A + G +PLH+AA + L+ ++V ++ EG + +
Sbjct: 157 VDIAEILLAAKCDL-HAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQ 215
Query: 138 WATVCGEV 145
A++ +V
Sbjct: 216 CASLNSQV 223
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 55/101 (54%), Gaps = 1/101 (0%)
Query: 212 QPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVD 271
+ +L AA AG D + L GA+V A+D G T LH AA GH E +E L+ GADV+
Sbjct: 16 KKLLEAARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLK-NGADVN 74
Query: 272 VIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
G + L A H + +LL++GA N QD+ G+T
Sbjct: 75 ATGNTGRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKT 115
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 53/101 (52%), Gaps = 2/101 (1%)
Query: 34 SLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIE 93
L+ AA+ G+D EV+ IL + V D T LH A L E +L+ D +
Sbjct: 17 KLLEAARAGQDDEVR-ILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGAD-VN 74
Query: 94 AADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHS 134
A G TPLHLAA A ++ ++ LL H A+VN+QD G +
Sbjct: 75 ATGNTGRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKT 115
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 44/74 (59%)
Query: 92 IEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETV 151
+ A D G+TPLHLAA+ G++ ++ LL + A+VN+ N G + +H A +E +E +
Sbjct: 40 VNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAWADHLEIVEVL 99
Query: 152 LSAGAEPSTPDIHG 165
L GA+ + D G
Sbjct: 100 LKHGADVNAQDKFG 113
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 210 GRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGAD 269
G P+ AA G + + L+K GA+V A G T LH AA H E +E L+ GAD
Sbjct: 47 GHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAWADHLEIVEVLLK-HGAD 105
Query: 270 VDVIDTNGCSALFYAVTLGHADATTLL 296
V+ D G +A ++ G+ D +L
Sbjct: 106 VNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 62/160 (38%), Gaps = 45/160 (28%)
Query: 106 AAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHG 165
AA AG + L A+ A+VN+ D GH+ +H A + G +E +E +L GA+ + G
Sbjct: 21 AARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTG 80
Query: 166 GYPIHYASQMCGHASEMGNDVRVGLAXXXXXXXXXXXXXXXXXXGRQPILWAASAGSSDA 225
P+H A+ WA +
Sbjct: 81 RTPLHLAA------------------------------------------WADHL---EI 95
Query: 226 ILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITL 265
+ L+K GA+V A DK G TA + G+ + E L L
Sbjct: 96 VEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 135
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 100/227 (44%), Gaps = 46/227 (20%)
Query: 97 EDGYTPLHLAAI----AGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVL 152
EDG + LHLA I A + +I + A +N Q+N + +H A + + E E +L
Sbjct: 3 EDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALL 62
Query: 153 SAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAXXXXXXXXXXXXXXXXXXGRQ 212
AG +P D G P+H A E G VG+
Sbjct: 63 GAGCDPELRDFRGNTPLHLAC-------EQGCLASVGV---------------------- 93
Query: 213 PILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDV 272
+ + + +IL +A + +G T LH A+ G+ +E L++L GADV+
Sbjct: 94 -LTQSCTTPHLHSIL---------KATNYNGHTCLHLASIHGYLGIVELLVSL-GADVNA 142
Query: 273 IDT-NGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT-YEYQW 317
+ NG +AL AV L + D +LLL+ GA NR +G + Y+ W
Sbjct: 143 QEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTW 189
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 55/114 (48%), Gaps = 6/114 (5%)
Query: 61 RDRTRKTVLHYCAENTILSCAETILE--VAPDL---IEAADEDGYTPLHLAAIAGNVPLI 115
RD T LH E L+ + + P L ++A + +G+T LHLA+I G + ++
Sbjct: 71 RDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIV 130
Query: 116 HTLLAHRANVNSQDN-EGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYP 168
L++ A+VN+Q+ G + +H A + + +L GA+ + G P
Sbjct: 131 ELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSP 184
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 48/109 (44%), Gaps = 19/109 (17%)
Query: 61 RDRTRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAG---------- 110
++ ++T LH AE +L D E D G TPLHLA G
Sbjct: 38 QNNLQQTPLHLAVITNQPEIAEALLGAGCD-PELRDFRGNTPLHLACEQGCLASVGVLTQ 96
Query: 111 --NVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAE 157
P +H++L + + GH+ +H A++ G + +E ++S GA+
Sbjct: 97 SCTTPHLHSIL------KATNYNGHTCLHLASIHGYLGIVELLVSLGAD 139
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 101/227 (44%), Gaps = 46/227 (20%)
Query: 97 EDGYTPLHLAAI----AGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVL 152
EDG + LHLA I A + +I + A +N Q+N + +H A + + E E +L
Sbjct: 6 EDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALL 65
Query: 153 SAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAXXXXXXXXXXXXXXXXXXGRQ 212
AG +P D G P+H A E G VG+
Sbjct: 66 GAGCDPELRDFRGNTPLHLAC-------EQGCLASVGVL--------------------- 97
Query: 213 PILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDV 272
+ ++ + +++KA + +G T LH A+ G+ +E L++L GADV+
Sbjct: 98 -----TQSCTTPHLHSILKAT------NYNGHTCLHLASIHGYLGIVELLVSL-GADVNA 145
Query: 273 IDT-NGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT-YEYQW 317
+ NG +AL AV L + D +LLL+ GA NR +G + Y+ W
Sbjct: 146 QEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTW 192
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 55/114 (48%), Gaps = 6/114 (5%)
Query: 61 RDRTRKTVLHYCAENTILSCAETILE--VAPDL---IEAADEDGYTPLHLAAIAGNVPLI 115
RD T LH E L+ + + P L ++A + +G+T LHLA+I G + ++
Sbjct: 74 RDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIV 133
Query: 116 HTLLAHRANVNSQDN-EGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYP 168
L++ A+VN+Q+ G + +H A + + +L GA+ + G P
Sbjct: 134 ELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSP 187
Score = 31.6 bits (70), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 48/109 (44%), Gaps = 19/109 (17%)
Query: 61 RDRTRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAG---------- 110
++ ++T LH AE +L D E D G TPLHLA G
Sbjct: 41 QNNLQQTPLHLAVITNQPEIAEALLGAGCD-PELRDFRGNTPLHLACEQGCLASVGVLTQ 99
Query: 111 --NVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAE 157
P +H++L N N GH+ +H A++ G + +E ++S GA+
Sbjct: 100 SCTTPHLHSILK-ATNYN-----GHTCLHLASIHGYLGIVELLVSLGAD 142
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 56/105 (53%), Gaps = 3/105 (2%)
Query: 210 GRQ--PILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCG 267
GRQ P+ +AA + L++ GA+V A DK GL LH A S GH E E L+ G
Sbjct: 40 GRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKH-G 98
Query: 268 ADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
A V+V D + L A G + LLLQ+GA P +++R G T
Sbjct: 99 AVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNT 143
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 38/73 (52%)
Query: 101 TPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPST 160
TPLH AA V ++ LL H A+V+++D G +H A G E E ++ GA +
Sbjct: 44 TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNV 103
Query: 161 PDIHGGYPIHYAS 173
D+ P+H A+
Sbjct: 104 ADLWKFTPLHEAA 116
Score = 30.8 bits (68), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 34/138 (24%)
Query: 30 EGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAP 89
E L+ AA+ G VK + + R+ + + T LH+ A +S E +L+
Sbjct: 7 EADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGA 66
Query: 90 DLIEAADEDG---------------------------------YTPLHLAAIAGNVPLIH 116
D + A D+ G +TPLH AA G +
Sbjct: 67 D-VHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICK 125
Query: 117 TLLAHRANVNSQDNEGHS 134
LL H A+ ++ +G++
Sbjct: 126 LLLQHGADPTKKNRDGNT 143
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 56/105 (53%), Gaps = 3/105 (2%)
Query: 210 GRQ--PILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCG 267
GRQ P+ +AA + L++ GA+V A DK GL LH A S GH E E L+ G
Sbjct: 42 GRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKH-G 100
Query: 268 ADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
A V+V D + L A G + LLLQ+GA P +++R G T
Sbjct: 101 AVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNT 145
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 38/73 (52%)
Query: 101 TPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPST 160
TPLH AA V ++ LL H A+V+++D G +H A G E E ++ GA +
Sbjct: 46 TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNV 105
Query: 161 PDIHGGYPIHYAS 173
D+ P+H A+
Sbjct: 106 ADLWKFTPLHEAA 118
Score = 31.2 bits (69), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 34/138 (24%)
Query: 30 EGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAP 89
E L+ AA+ G VK + + R+ + + T LH+ A +S E +L+
Sbjct: 9 EADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGA 68
Query: 90 DLIEAADEDG---------------------------------YTPLHLAAIAGNVPLIH 116
D + A D+ G +TPLH AA G +
Sbjct: 69 D-VHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICK 127
Query: 117 TLLAHRANVNSQDNEGHS 134
LL H A+ ++ +G++
Sbjct: 128 LLLQHGADPTKKNRDGNT 145
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 55/97 (56%), Gaps = 1/97 (1%)
Query: 211 RQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADV 270
R + WA SAG ++ + L++ G V D G + LH AAS G E ++ L+ + GA V
Sbjct: 41 RTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALL-VKGAHV 99
Query: 271 DVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQD 307
+ ++ NGC+ L YA + + +LL+ GA P+ +D
Sbjct: 100 NAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKD 136
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 79/199 (39%), Gaps = 46/199 (23%)
Query: 114 LIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYAS 173
L +LA ++ D + + +HWA G E +E +L G + D G P+H
Sbjct: 22 LKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHI-- 79
Query: 174 QMCGHASEMGNDVRVGLAXXXXXXXXXXXXXXXXXXGRQPILWAASAGSSDAILALVKAG 233
AASAG + + AL+ G
Sbjct: 80 -------------------------------------------AASAGRDEIVKALLVKG 96
Query: 234 ANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADAT 293
A+V A +++G T LH AAS+ E + ++ GA+ D D +A+ A G+
Sbjct: 97 AHVNAVNQNGCTPLHYAASKNRHE-IAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMV 155
Query: 294 TLLLQYGATPNRQDRKGRT 312
+LL Y A+ N QD +G T
Sbjct: 156 HILLFYKASTNIQDTEGNT 174
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 89/217 (41%), Gaps = 46/217 (21%)
Query: 96 DEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAG 155
D+D T LH A AG+ ++ LL VN +D+ G S +H A G E ++ +L G
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVKG 96
Query: 156 AEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAXXXXXXXXXXXXXXXXXXGRQPIL 215
A + + +G P+HY
Sbjct: 97 AHVNAVNQNGCTPLHY-------------------------------------------- 112
Query: 216 WAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDT 275
AAS + + L++ GAN +A D TA+H AA++G+ + + L+ A ++ DT
Sbjct: 113 -AASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILL-FYKASTNIQDT 170
Query: 276 NGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
G + L A + L+ GA+ ++++ +T
Sbjct: 171 EGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKT 207
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 71/149 (47%), Gaps = 6/149 (4%)
Query: 29 MEGATS---LMYAAQQGKDAEVKA-ILASRPNAVRERDRTRKTVLHYCAENTILSCAETI 84
MEG S + A GK E+K ILA + A R D+ +T LH+ E +
Sbjct: 1 MEGCVSNIMICNLAYSGKLDELKERILADKSLATR-TDQDSRTALHWACSAGHTEIVEFL 59
Query: 85 LEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGE 144
L++ + D+ G++PLH+AA AG ++ LL A+VN+ + G + +H+A
Sbjct: 60 LQLGVP-VNDKDDAGWSPLHIAASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNR 118
Query: 145 VEALETVLSAGAEPSTPDIHGGYPIHYAS 173
E +L GA P D + +H A+
Sbjct: 119 HEIAVMLLEGGANPDAKDHYDATAMHRAA 147
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 54/97 (55%), Gaps = 1/97 (1%)
Query: 211 RQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADV 270
R + WA SAG ++ + L++ G V D G + LH AAS G E ++ L+ GA V
Sbjct: 41 RTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGK-GAQV 99
Query: 271 DVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQD 307
+ ++ NGC+ L YA + + +LL+ GA P+ +D
Sbjct: 100 NAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKD 136
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 79/199 (39%), Gaps = 46/199 (23%)
Query: 114 LIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYAS 173
L ++LA ++ D + + +HWA G E +E +L G + D G P+H
Sbjct: 22 LKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHI-- 79
Query: 174 QMCGHASEMGNDVRVGLAXXXXXXXXXXXXXXXXXXGRQPILWAASAGSSDAILALVKAG 233
AASAG + + AL+ G
Sbjct: 80 -------------------------------------------AASAGRDEIVKALLGKG 96
Query: 234 ANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADAT 293
A V A +++G T LH AAS+ E + ++ GA+ D D +A+ A G+
Sbjct: 97 AQVNAVNQNGCTPLHYAASKNRHE-IAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMI 155
Query: 294 TLLLQYGATPNRQDRKGRT 312
+LL Y A+ N QD +G T
Sbjct: 156 HILLYYKASTNIQDTEGNT 174
Score = 57.8 bits (138), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 91/217 (41%), Gaps = 46/217 (21%)
Query: 96 DEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAG 155
D+D T LH A AG+ ++ LL VN +D+ G S +H A G E ++ +L G
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKG 96
Query: 156 AEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAXXXXXXXXXXXXXXXXXXGRQPIL 215
A+ + + +G P+HY
Sbjct: 97 AQVNAVNQNGCTPLHY-------------------------------------------- 112
Query: 216 WAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDT 275
AAS + + L++ GAN +A D TA+H AA++G+ + + L+ A ++ DT
Sbjct: 113 -AASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYY-KASTNIQDT 170
Query: 276 NGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
G + L A + LL+ GA+ ++++ +T
Sbjct: 171 EGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKT 207
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 71/149 (47%), Gaps = 6/149 (4%)
Query: 29 MEGATSLMYA---AQQGKDAEVK-AILASRPNAVRERDRTRKTVLHYCAENTILSCAETI 84
MEG S + A GK E+K +ILA + A R D+ +T LH+ E +
Sbjct: 1 MEGCVSNLMVCNLAYSGKLEELKESILADKSLATR-TDQDSRTALHWACSAGHTEIVEFL 59
Query: 85 LEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGE 144
L++ + D+ G++PLH+AA AG ++ LL A VN+ + G + +H+A
Sbjct: 60 LQLGVP-VNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNR 118
Query: 145 VEALETVLSAGAEPSTPDIHGGYPIHYAS 173
E +L GA P D + +H A+
Sbjct: 119 HEIAVMLLEGGANPDAKDHYEATAMHRAA 147
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 54/97 (55%), Gaps = 1/97 (1%)
Query: 211 RQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADV 270
R + WA SAG ++ + L++ G V D G + LH AAS G E ++ L+ GA V
Sbjct: 42 RTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGK-GAQV 100
Query: 271 DVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQD 307
+ ++ NGC+ L YA + + +LL+ GA P+ +D
Sbjct: 101 NAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKD 137
Score = 57.8 bits (138), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 79/199 (39%), Gaps = 46/199 (23%)
Query: 114 LIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYAS 173
L ++LA ++ D + + +HWA G E +E +L G + D G P+H
Sbjct: 23 LKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHI-- 80
Query: 174 QMCGHASEMGNDVRVGLAXXXXXXXXXXXXXXXXXXGRQPILWAASAGSSDAILALVKAG 233
AASAG + + AL+ G
Sbjct: 81 -------------------------------------------AASAGRDEIVKALLGKG 97
Query: 234 ANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADAT 293
A V A +++G T LH AAS+ E + ++ GA+ D D +A+ A G+
Sbjct: 98 AQVNAVNQNGCTPLHYAASKNRHE-IAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMI 156
Query: 294 TLLLQYGATPNRQDRKGRT 312
+LL Y A+ N QD +G T
Sbjct: 157 HILLYYKASTNIQDTEGNT 175
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 91/217 (41%), Gaps = 46/217 (21%)
Query: 96 DEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAG 155
D+D T LH A AG+ ++ LL VN +D+ G S +H A G E ++ +L G
Sbjct: 38 DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKG 97
Query: 156 AEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAXXXXXXXXXXXXXXXXXXGRQPIL 215
A+ + + +G P+HY
Sbjct: 98 AQVNAVNQNGCTPLHY-------------------------------------------- 113
Query: 216 WAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDT 275
AAS + + L++ GAN +A D TA+H AA++G+ + + L+ A ++ DT
Sbjct: 114 -AASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYY-KASTNIQDT 171
Query: 276 NGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
G + L A + LL+ GA+ ++++ +T
Sbjct: 172 EGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKT 208
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 66/136 (48%), Gaps = 3/136 (2%)
Query: 39 AQQGKDAEVK-AILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIEAADE 97
A GK E+K +ILA + A R D+ +T LH+ E +L++ + D+
Sbjct: 15 AYSGKLEELKESILADKSLATR-TDQDSRTALHWACSAGHTEIVEFLLQLGVP-VNDKDD 72
Query: 98 DGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAE 157
G++PLH+AA AG ++ LL A VN+ + G + +H+A E +L GA
Sbjct: 73 AGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN 132
Query: 158 PSTPDIHGGYPIHYAS 173
P D + +H A+
Sbjct: 133 PDAKDHYEATAMHRAA 148
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 56/105 (53%), Gaps = 3/105 (2%)
Query: 210 GRQ--PILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCG 267
GRQ P+ +AA + L++ GA+V A DK GL LH A S GH E E L+ G
Sbjct: 44 GRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVK-HG 102
Query: 268 ADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
A V+V D + L A G + LLLQ+GA P +++R G T
Sbjct: 103 AVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNT 147
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 38/73 (52%)
Query: 101 TPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPST 160
TPLH AA V ++ LL H A+V+++D G +H A G E E ++ GA +
Sbjct: 48 TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNV 107
Query: 161 PDIHGGYPIHYAS 173
D+ P+H A+
Sbjct: 108 ADLWKFTPLHEAA 120
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 34/138 (24%)
Query: 30 EGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAP 89
E L+ AA+ G VK + + R+ + + T LH+ A +S E +L+
Sbjct: 11 EADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGA 70
Query: 90 DLIEAADEDG---------------------------------YTPLHLAAIAGNVPLIH 116
D + A D+ G +TPLH AA G +
Sbjct: 71 D-VHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICK 129
Query: 117 TLLAHRANVNSQDNEGHS 134
LL H A+ ++ +G++
Sbjct: 130 LLLQHGADPTKKNRDGNT 147
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 60.8 bits (146), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 55/97 (56%), Gaps = 1/97 (1%)
Query: 211 RQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADV 270
R + WA SAG ++ + L++ G V D G + LH AAS G E ++ L+ + GA V
Sbjct: 41 RTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALL-VKGAHV 99
Query: 271 DVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQD 307
+ ++ NGC+ L YA + + +LL+ GA P+ +D
Sbjct: 100 NAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKD 136
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 79/199 (39%), Gaps = 46/199 (23%)
Query: 114 LIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYAS 173
L +LA ++ D + + +HWA G E +E +L G + D G P+H
Sbjct: 22 LKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHI-- 79
Query: 174 QMCGHASEMGNDVRVGLAXXXXXXXXXXXXXXXXXXGRQPILWAASAGSSDAILALVKAG 233
AASAG + + AL+ G
Sbjct: 80 -------------------------------------------AASAGXDEIVKALLVKG 96
Query: 234 ANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADAT 293
A+V A +++G T LH AAS+ E + ++ GA+ D D +A+ A G+
Sbjct: 97 AHVNAVNQNGCTPLHYAASKNRHE-IAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMV 155
Query: 294 TLLLQYGATPNRQDRKGRT 312
+LL Y A+ N QD +G T
Sbjct: 156 HILLFYKASTNIQDTEGNT 174
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 89/217 (41%), Gaps = 46/217 (21%)
Query: 96 DEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAG 155
D+D T LH A AG+ ++ LL VN +D+ G S +H A G E ++ +L G
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKG 96
Query: 156 AEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAXXXXXXXXXXXXXXXXXXGRQPIL 215
A + + +G P+HY
Sbjct: 97 AHVNAVNQNGCTPLHY-------------------------------------------- 112
Query: 216 WAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDT 275
AAS + + L++ GAN +A D TA+H AA++G+ + + L+ A ++ DT
Sbjct: 113 -AASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILL-FYKASTNIQDT 170
Query: 276 NGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
G + L A + L+ GA+ ++++ +T
Sbjct: 171 EGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKT 207
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 71/149 (47%), Gaps = 6/149 (4%)
Query: 29 MEGATS---LMYAAQQGKDAEVKA-ILASRPNAVRERDRTRKTVLHYCAENTILSCAETI 84
MEG S + A GK E+K ILA + A R D+ +T LH+ E +
Sbjct: 1 MEGCVSNIMICNLAYSGKLDELKERILADKSLATR-TDQDSRTALHWACSAGHTEIVEFL 59
Query: 85 LEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGE 144
L++ + D+ G++PLH+AA AG ++ LL A+VN+ + G + +H+A
Sbjct: 60 LQLGVP-VNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNR 118
Query: 145 VEALETVLSAGAEPSTPDIHGGYPIHYAS 173
E +L GA P D + +H A+
Sbjct: 119 HEIAVMLLEGGANPDAKDHYDATAMHRAA 147
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 55/103 (53%), Gaps = 1/103 (0%)
Query: 210 GRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGAD 269
G P+ AA G +D I L+K GAN A + D LH A +GH + ++ L+ A
Sbjct: 86 GSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLD-SNAK 144
Query: 270 VDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
+ D +G + L YA + GH + LLLQ+GA+ N + KG T
Sbjct: 145 PNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNT 187
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 80/190 (42%), Gaps = 46/190 (24%)
Query: 92 IEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETV 151
+ +DG +PLH+AA+ G LI LL H AN +++ + +H A G + ++ +
Sbjct: 79 VNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCL 138
Query: 152 LSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAXXXXXXXXXXXXXXXXXXGR 211
L + A+P+ D+ G P+
Sbjct: 139 LDSNAKPNKKDLSGNTPL------------------------------------------ 156
Query: 212 QPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVD 271
++A S G + + L++ GA++ A + G TALH A H +E L+ L GA V
Sbjct: 157 ---IYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVE-LLLLHGASVQ 212
Query: 272 VIDTNGCSAL 281
V++ +A+
Sbjct: 213 VLNKRQRTAV 222
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 65/135 (48%), Gaps = 14/135 (10%)
Query: 28 TMEGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEV 87
+ +G++ L AA G+ + +L NA R+ + LH L+C + +V
Sbjct: 83 SQDGSSPLHVAALHGRADLIPLLLKHGANA-GARNADQAVPLH-------LACQQGHFQV 134
Query: 88 APDLIEA------ADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATV 141
L+++ D G TPL A G+ L+ LL H A++N+ +N+G++ +H A +
Sbjct: 135 VKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVI 194
Query: 142 CGEVEALETVLSAGA 156
V +E +L GA
Sbjct: 195 EKHVFVVELLLLHGA 209
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 41/101 (40%), Gaps = 2/101 (1%)
Query: 213 PILWAASAGSSDAILALVKA-GANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVD 271
P+ + LA V A G V +DG + LH AA G + + L+ GA+
Sbjct: 55 PLCQCPKCAPAQKRLAKVPASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKH-GANAG 113
Query: 272 VIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
+ + L A GH LL A PN++D G T
Sbjct: 114 ARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNT 154
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 56/128 (43%), Gaps = 7/128 (5%)
Query: 32 ATSLMYAAQQGKDAEVKAILAS--RPNAVRERDRTRKTVLHYCAENTILSCAETILEVAP 89
A L A QQG VK +L S +PN ++D + T L Y +L+
Sbjct: 120 AVPLHLACQQGHFQVVKCLLDSNAKPN---KKDLSGNTPLIYACSGGHHELVALLLQHGA 176
Query: 90 DLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEV-EAL 148
I A++ G T LH A I +V ++ LL H A+V + + V A ++ E L
Sbjct: 177 S-INASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQNSKIMELL 235
Query: 149 ETVLSAGA 156
+ V S A
Sbjct: 236 QVVPSCVA 243
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 53/106 (50%), Gaps = 2/106 (1%)
Query: 213 PILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDV 272
P+ WA G ++ L+K GA+ D +G + +H AA GH + LI G DVD+
Sbjct: 79 PLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIA-KGQDVDM 137
Query: 273 IDTNGCSALFYAVTLGHA-DATTLLLQYGATPNRQDRKGRTYEYQW 317
+D NG + L +A H+ D T LLL + + N D+ + W
Sbjct: 138 MDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHW 183
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 62/250 (24%), Positives = 102/250 (40%), Gaps = 53/250 (21%)
Query: 71 YCAENTILSCAETILEVAPDLIEAA------DEDGYTPLHLAAIAGNVPLIHTLLAHRAN 124
Y + + + I E +L+EA D++ T LH AAI + L+ ++ A
Sbjct: 8 YSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAI 67
Query: 125 VNSQDNEGHSV-VHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMG 183
V+ + +S +HWAT G + + ++ GA+PS D G IH A+Q GH S
Sbjct: 68 VDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQF-GHTS--- 123
Query: 184 NDVRVGLAXXXXXXXXXXXXXXXXXXGRQPILWAASAGSSDAILALVKAGANVEAHDKDG 243
+ L+ G +V+ D++G
Sbjct: 124 -----------------------------------------IVAYLIAKGQDVDMMDQNG 142
Query: 244 LTALHCAASRGHRECLETLITLCGADVDVIDT-NGCSALFYAVTLGHADATTLLLQYGAT 302
+T L AA R H L+ V++ D + +AL +AV G+ +LLL+ GA
Sbjct: 143 MTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGAN 202
Query: 303 PNRQDRKGRT 312
+ Q+ KG +
Sbjct: 203 VDAQNIKGES 212
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 87/196 (44%), Gaps = 10/196 (5%)
Query: 58 VRERDRTRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHT 117
VR+ D+ T+LH+ A N + + + + + + TPLH A G++ ++
Sbjct: 35 VRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQ 94
Query: 118 LLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCG 177
L+ + A+ + D EG S +H A G + +++ G + D +G P+ +A+
Sbjct: 95 LMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAA---- 150
Query: 178 HASEMGNDVRVGLAXXXXXXXXXXXXXXXXXXGRQPILWAASAGSSDAILALVKAGANVE 237
+ + + R+ L + WA AG++ I L++AGANV+
Sbjct: 151 YRTHSVDPTRLLLTFNVSVNLGDKYHK------NTALHWAVLAGNTTVISLLLEAGANVD 204
Query: 238 AHDKDGLTALHCAASR 253
A + G +AL A R
Sbjct: 205 AQNIKGESALDLAKQR 220
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 80/189 (42%), Gaps = 21/189 (11%)
Query: 2 VDVISIFLSKPNLVWENGSFDKKVHNTMEGATSLMYAAQQGKDAEVKAIL--ASRPNAVR 59
+D++ ++SK +V + G +T L +A +QG + V ++ + P+ +
Sbjct: 55 IDLVKYYISKGAIVDQLGGD--------LNSTPLHWATRQGHLSMVVQLMKYGADPSLI- 105
Query: 60 ERDRTRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAI-AGNVPLIHTL 118
D + +H A+ S ++ D ++ D++G TPL AA +V L
Sbjct: 106 --DGEGCSCIHLAAQFGHTSIVAYLIAKGQD-VDMMDQNGMTPLMWAAYRTHSVDPTRLL 162
Query: 119 LAHRANVNSQDN-EGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQ--- 174
L +VN D ++ +HWA + G + +L AGA +I G + A Q
Sbjct: 163 LTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKN 222
Query: 175 --MCGHASE 181
M H E
Sbjct: 223 VWMINHLQE 231
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 54/101 (53%), Gaps = 1/101 (0%)
Query: 210 GRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGAD 269
G P++WAA+ G + L++ GA+ + K +AL A S+G+ + ++ L+ CG D
Sbjct: 52 GFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLD-CGVD 110
Query: 270 VDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKG 310
V+ D NG + L YAV H +LL+ GA P + G
Sbjct: 111 VNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSG 151
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 74/188 (39%), Gaps = 48/188 (25%)
Query: 103 LHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPD 162
+H A G + + T + +N D EG + + WA G++ +E +L GA+P
Sbjct: 23 VHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP---- 78
Query: 163 IHGGYPIHYASQMCGHASEMGNDVRVGLAXXXXXXXXXXXXXXXXXXGRQPIL-WAASAG 221
Q+ G GR+ L A S G
Sbjct: 79 -----------QLLG-------------------------------KGRESALSLACSKG 96
Query: 222 SSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSAL 281
+D + L+ G +V +D +G T L A H +C++ L+ GAD + +G +++
Sbjct: 97 YTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLE-SGADPTIETDSGYNSM 155
Query: 282 FYAVTLGH 289
AV LG+
Sbjct: 156 DLAVALGY 163
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 42/83 (50%)
Query: 90 DLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALE 149
++I DE+G+TPL AA G + ++ LL + A+ S + A G + ++
Sbjct: 43 NVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVK 102
Query: 150 TVLSAGAEPSTPDIHGGYPIHYA 172
+L G + + D +GG P+ YA
Sbjct: 103 MLLDCGVDVNEYDWNGGTPLLYA 125
Score = 35.8 bits (81), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Query: 235 NVEAH-DKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADAT 293
NV H D++G T L AA+ G +E L+ GAD ++ SAL A + G+ D
Sbjct: 43 NVINHTDEEGFTPLMWAAAHGQIAVVEFLLQ-NGADPQLLGKGRESALSLACSKGYTDIV 101
Query: 294 TLLLQYGATPNRQDRKGRT 312
+LL G N D G T
Sbjct: 102 KMLLDCGVDVNEYDWNGGT 120
Score = 30.8 bits (68), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 6/116 (5%)
Query: 54 RPNAVRERDRTRKTVLHYCAENTILSCAETILE--VAPDLIEAADEDGYTPLHLAAIAGN 111
+ N + D T L + A + ++ E +L+ P L+ E + L LA G
Sbjct: 41 QENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRE---SALSLACSKGY 97
Query: 112 VPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGY 167
++ LL +VN D G + + +A V+ ++ +L +GA+P T + GY
Sbjct: 98 TDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADP-TIETDSGY 152
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 54/101 (53%), Gaps = 1/101 (0%)
Query: 210 GRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGAD 269
G P++WAA+ G + L++ GA+ + K +AL A S+G+ + ++ L+ CG D
Sbjct: 34 GFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLD-CGVD 92
Query: 270 VDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKG 310
V+ D NG + L YAV H +LL+ GA P + G
Sbjct: 93 VNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSG 133
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 74/188 (39%), Gaps = 48/188 (25%)
Query: 103 LHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPD 162
+H A G + + T + +N D EG + + WA G++ +E +L GA+P
Sbjct: 5 VHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP---- 60
Query: 163 IHGGYPIHYASQMCGHASEMGNDVRVGLAXXXXXXXXXXXXXXXXXXGRQPIL-WAASAG 221
Q+ G GR+ L A S G
Sbjct: 61 -----------QLLG-------------------------------KGRESALSLACSKG 78
Query: 222 SSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSAL 281
+D + L+ G +V +D +G T L A H +C++ L+ GAD + +G +++
Sbjct: 79 YTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLE-SGADPTIETDSGYNSM 137
Query: 282 FYAVTLGH 289
AV LG+
Sbjct: 138 DLAVALGY 145
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 42/83 (50%)
Query: 90 DLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALE 149
++I DE+G+TPL AA G + ++ LL + A+ S + A G + ++
Sbjct: 25 NVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVK 84
Query: 150 TVLSAGAEPSTPDIHGGYPIHYA 172
+L G + + D +GG P+ YA
Sbjct: 85 MLLDCGVDVNEYDWNGGTPLLYA 107
Score = 35.8 bits (81), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Query: 235 NVEAH-DKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADAT 293
NV H D++G T L AA+ G +E L+ GAD ++ SAL A + G+ D
Sbjct: 25 NVINHTDEEGFTPLMWAAAHGQIAVVEFLLQ-NGADPQLLGKGRESALSLACSKGYTDIV 83
Query: 294 TLLLQYGATPNRQDRKGRT 312
+LL G N D G T
Sbjct: 84 KMLLDCGVDVNEYDWNGGT 102
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 6/116 (5%)
Query: 54 RPNAVRERDRTRKTVLHYCAENTILSCAETILE--VAPDLIEAADEDGYTPLHLAAIAGN 111
+ N + D T L + A + ++ E +L+ P L+ E + L LA G
Sbjct: 23 QENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRE---SALSLACSKGY 79
Query: 112 VPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGY 167
++ LL +VN D G + + +A V+ ++ +L +GA+P T + GY
Sbjct: 80 TDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADP-TIETDSGY 134
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 54/101 (53%), Gaps = 1/101 (0%)
Query: 210 GRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGAD 269
G P++WAA+ G + L++ GA+ + K +AL A S+G+ + ++ L+ CG D
Sbjct: 36 GFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLD-CGVD 94
Query: 270 VDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKG 310
V+ D NG + L YAV H +LL+ GA P + G
Sbjct: 95 VNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSG 135
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 74/188 (39%), Gaps = 48/188 (25%)
Query: 103 LHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPD 162
+H A G + + T + +N D EG + + WA G++ +E +L GA+P
Sbjct: 7 VHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP---- 62
Query: 163 IHGGYPIHYASQMCGHASEMGNDVRVGLAXXXXXXXXXXXXXXXXXXGRQPIL-WAASAG 221
Q+ G GR+ L A S G
Sbjct: 63 -----------QLLG-------------------------------KGRESALSLACSKG 80
Query: 222 SSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSAL 281
+D + L+ G +V +D +G T L A H +C++ L+ GAD + +G +++
Sbjct: 81 YTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLE-SGADPTIETDSGYNSM 139
Query: 282 FYAVTLGH 289
AV LG+
Sbjct: 140 DLAVALGY 147
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 42/83 (50%)
Query: 90 DLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALE 149
++I DE+G+TPL AA G + ++ LL + A+ S + A G + ++
Sbjct: 27 NVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVK 86
Query: 150 TVLSAGAEPSTPDIHGGYPIHYA 172
+L G + + D +GG P+ YA
Sbjct: 87 MLLDCGVDVNEYDWNGGTPLLYA 109
Score = 35.8 bits (81), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Query: 235 NVEAH-DKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADAT 293
NV H D++G T L AA+ G +E L+ GAD ++ SAL A + G+ D
Sbjct: 27 NVINHTDEEGFTPLMWAAAHGQIAVVEFLLQ-NGADPQLLGKGRESALSLACSKGYTDIV 85
Query: 294 TLLLQYGATPNRQDRKGRT 312
+LL G N D G T
Sbjct: 86 KMLLDCGVDVNEYDWNGGT 104
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 6/116 (5%)
Query: 54 RPNAVRERDRTRKTVLHYCAENTILSCAETILE--VAPDLIEAADEDGYTPLHLAAIAGN 111
+ N + D T L + A + ++ E +L+ P L+ E + L LA G
Sbjct: 25 QENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRE---SALSLACSKGY 81
Query: 112 VPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGY 167
++ LL +VN D G + + +A V+ ++ +L +GA+P T + GY
Sbjct: 82 TDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADP-TIETDSGY 136
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 74/154 (48%), Gaps = 18/154 (11%)
Query: 34 SLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILE--VAPDL 91
L+ AA+ G+D EV+ ++A+ A D + LH A+ S E +L V+ D
Sbjct: 5 KLLEAARAGQDDEVRILMAN--GAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDA 62
Query: 92 IEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETV 151
D TPLH+AA G+ ++ LL H A+VN++D + +HWAT E +E +
Sbjct: 63 RTKVDR---TPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELL 119
Query: 152 LSAGAEPSTPDIHGGYPIHYASQMCGHASEMGND 185
+ GA+ +H S+ C A ++ D
Sbjct: 120 IKYGAD-----------VHTQSKFCKTAFDISID 142
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 66/146 (45%), Gaps = 13/146 (8%)
Query: 151 VLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAXXXXXXXXXXXXXXXXXXG 210
+L A P T D G P+H A+Q GH S +R G++
Sbjct: 20 ILMANGAPFTTDWLGTSPLHLAAQY-GHFSTTEVLLRAGVSRDARTKV-----------D 67
Query: 211 RQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADV 270
R P+ AAS G ++ + L+K GA+V A D +TALH A H+E +E LI GADV
Sbjct: 68 RTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIK-YGADV 126
Query: 271 DVIDTNGCSALFYAVTLGHADATTLL 296
+A ++ G+ D +L
Sbjct: 127 HTQSKFCKTAFDISIDNGNEDLAEIL 152
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 52/103 (50%), Gaps = 1/103 (0%)
Query: 210 GRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGAD 269
G P+ AA G L++AG + +A K T LH AAS GH +E L+ GAD
Sbjct: 34 GTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLK-HGAD 92
Query: 270 VDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
V+ D +AL +A H + LL++YGA + Q + +T
Sbjct: 93 VNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKT 135
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 45/96 (46%), Gaps = 2/96 (2%)
Query: 212 QPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVD 271
+ +L AA AG D + L+ GA D G + LH AA GH E L+ G D
Sbjct: 4 KKLLEAARAGQDDEVRILMANGAPFTT-DWLGTSPLHLAAQYGHFSTTEVLLR-AGVSRD 61
Query: 272 VIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQD 307
+ L A + GHA+ +LL++GA N +D
Sbjct: 62 ARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKD 97
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 85/207 (41%), Gaps = 41/207 (19%)
Query: 91 LIEAADEDGYTPLHLAAIAGNVPLIHTLL-AHRANVNSQDNEGHSVVHWATVCGEVEALE 149
++ AD +G T LH + N P++ LL + V+ Q+ G+S + + AL
Sbjct: 103 VVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIM-------LTALA 155
Query: 150 TVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAXXXXXXXXXXXXXXXXXX 209
T+ + DI + + AS+
Sbjct: 156 TL------KTQDDIETVLQLFRLGNINAKASQ---------------------------A 182
Query: 210 GRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGAD 269
G+ ++ A S G D + AL+ A+V D DG TAL CA GH+E L+ + D
Sbjct: 183 GQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCD 242
Query: 270 VDVIDTNGCSALFYAVTLGHADATTLL 296
+ + D +G +AL A+ G ++ ++L
Sbjct: 243 ISLTDRDGSTALMVALDAGQSEIASML 269
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 54/113 (47%), Gaps = 15/113 (13%)
Query: 210 GRQPILWAASA-----GSSDAILALVKAGANVEAH-DKDGLTALHCAASRGHRECLETLI 263
G PI+ A A + +L L + G N+ A + G TAL A S G + ++ L+
Sbjct: 145 GYSPIMLTALATLKTQDDIETVLQLFRLG-NINAKASQAGQTALMLAVSHGRVDVVKALL 203
Query: 264 TLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATP----NRQDRKGRT 312
C ADV+V D +G +AL A GH + LLL A P + DR G T
Sbjct: 204 A-CEADVNVQDDDGSTALMCACEHGHKEIAGLLL---AVPSCDISLTDRDGST 252
Score = 34.7 bits (78), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 56/113 (49%), Gaps = 4/113 (3%)
Query: 31 GATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSC--AETILEVA 88
G T+L Y+ V+ +L S V +++R + + A T+ + ET+L++
Sbjct: 111 GNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLF 170
Query: 89 P--DLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWA 139
++ A + G T L LA G V ++ LLA A+VN QD++G + + A
Sbjct: 171 RLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCA 223
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 54/122 (44%), Gaps = 8/122 (6%)
Query: 62 DRTRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIA--GNVPLIHTLL 119
D T LHY + + +L+ ++ + GY+P+ L A+A I T+L
Sbjct: 108 DSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVL 167
Query: 120 A--HRANVNSQDNE-GHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMC 176
N+N++ ++ G + + A G V+ ++ +L+ A+ + D G + A C
Sbjct: 168 QLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCA---C 224
Query: 177 GH 178
H
Sbjct: 225 EH 226
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 57.0 bits (136), Expect = 1e-08, Method: Composition-based stats.
Identities = 35/85 (41%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 212 QPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVD 271
+ +L AA AG D + L+ GA+V A DKDG T LH AA GH E +E L+ GADV+
Sbjct: 4 KKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK-AGADVN 62
Query: 272 VIDTNGCSALFYAVTLGHADATTLL 296
D G +A ++ G+ D +L
Sbjct: 63 AQDKFGKTAFDISIDNGNEDLAEIL 87
Score = 45.4 bits (106), Expect = 4e-05, Method: Composition-based stats.
Identities = 21/43 (48%), Positives = 30/43 (69%)
Query: 92 IEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHS 134
+ A D+DGYTPLHLAA G++ ++ LL A+VN+QD G +
Sbjct: 28 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKT 70
Score = 40.4 bits (93), Expect = 0.001, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 37/60 (61%)
Query: 106 AAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHG 165
AA AG + L+A+ A+VN++D +G++ +H A G +E +E +L AGA+ + D G
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFG 68
Score = 36.2 bits (82), Expect = 0.023, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 27/46 (58%)
Query: 267 GADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
GADV+ D +G + L A GH + +LL+ GA N QD+ G+T
Sbjct: 25 GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKT 70
Score = 34.7 bits (78), Expect = 0.074, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 28/53 (52%)
Query: 210 GRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETL 262
G P+ AA G + + L+KAGA+V A DK G TA + G+ + E L
Sbjct: 35 GYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 87
Score = 34.7 bits (78), Expect = 0.076, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Query: 35 LMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIEA 94
L+ AA+ G+D EV+ ++A+ + V +D+ T LH A L E +L+ D + A
Sbjct: 6 LLEAARAGQDDEVRILMANGAD-VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNA 63
Query: 95 ADEDGYTPLHLAAIAGNVPLIHTL 118
D+ G T ++ GN L L
Sbjct: 64 QDKFGKTAFDISIDNGNEDLAEIL 87
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 73/172 (42%), Gaps = 24/172 (13%)
Query: 98 DGY--TPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAG 155
D Y TPL +A + G I L+ + + +D EG + + WA + E +LS G
Sbjct: 32 DSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKG 91
Query: 156 AEPSTPDIHGGYPIHYA-----SQMCGHASEMGNDVRVGLAXXXXXXXXXXXXXXXXXXG 210
+ +T D G P+ ++ S+M E G +V G
Sbjct: 92 SNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVN-----------------DRNLEG 134
Query: 211 RQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETL 262
P++ A+ G S+ + L++ GA++ A D GLTA A G +E ++
Sbjct: 135 ETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIF 186
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 63/133 (47%), Gaps = 2/133 (1%)
Query: 33 TSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLI 92
T LM A G + + L + + ++D T L + +N L AE +L + +
Sbjct: 37 TPLMVACMLGMENAIDK-LVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSN-V 94
Query: 93 EAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVL 152
D G TPL + I G + + LL H ANVN ++ EG + + A+ G E ++ +L
Sbjct: 95 NTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLL 154
Query: 153 SAGAEPSTPDIHG 165
GA+ S D+ G
Sbjct: 155 ELGADISARDLTG 167
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 55/102 (53%), Gaps = 1/102 (0%)
Query: 211 RQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADV 270
R P++ A G +AI LV+ +E D +G TAL A E L++ G++V
Sbjct: 36 RTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLS-KGSNV 94
Query: 271 DVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
+ D +G + L +++ G+++ + LL++GA N ++ +G T
Sbjct: 95 NTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGET 136
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 212 QPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVD 271
+ +L AA AG D + L+ GA+V A DK+G T LH AA GH E ++ L+ GADV
Sbjct: 26 KKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLE-AGADVX 84
Query: 272 VIDTNGCSALFYAVTLGHADATTLL 296
D G +A ++ G+ D +L
Sbjct: 85 AQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
Query: 32 ATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDL 91
L+ AA+ G+D EV+ ++A+ + V +D+ T LH A N L + +LE D
Sbjct: 25 GKKLLEAARAGQDDEVRILMANGAD-VAAKDKNGSTPLHLAARNGHLEVVKLLLEAGAD- 82
Query: 92 IEAADEDGYTPLHLAAIAGNVPLIHTL 118
+ A D+ G T ++ GN L L
Sbjct: 83 VXAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 32/62 (51%)
Query: 251 ASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKG 310
A+R ++ ++ GADV D NG + L A GH + LLL+ GA QD+ G
Sbjct: 31 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFG 90
Query: 311 RT 312
+T
Sbjct: 91 KT 92
Score = 36.2 bits (82), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 33/60 (55%)
Query: 92 IEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETV 151
+ A D++G TPLHLAA G++ ++ LL A+V +QD G + + G + E +
Sbjct: 50 VAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%)
Query: 210 GRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETL 262
G P+ AA G + + L++AGA+V A DK G TA + G+ + E L
Sbjct: 57 GSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 241 KDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYG 300
KDG T LH AA GH E ++ L++ GADV+ +G + L A GHA+ LLL G
Sbjct: 7 KDGNTPLHNAAKNGHAEEVKKLLS-KGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKG 65
Query: 301 ATPNRQDRKGRTYEY 315
A N + + G T E+
Sbjct: 66 ADVNARSKDGNTPEH 80
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 48/95 (50%), Gaps = 1/95 (1%)
Query: 210 GRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGAD 269
G P+ AA G ++ + L+ GA+V A KDG T LH AA GH E ++ L+ GAD
Sbjct: 9 GNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLA-KGAD 67
Query: 270 VDVIDTNGCSALFYAVTLGHADATTLLLQYGATPN 304
V+ +G + A GH + LL GA N
Sbjct: 68 VNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVN 102
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 67 TVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVN 126
T LH A+N + +L D + A +DG TPLHLAA G+ ++ LLA A+VN
Sbjct: 11 TPLHNAAKNGHAEEVKKLLSKGAD-VNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVN 69
Query: 127 SQDNEGHSVVHWATVCGEVEALETVLSAGAE 157
++ +G++ H A G E ++ + + GA+
Sbjct: 70 ARSKDGNTPEHLAKKNGHHEIVKLLDAKGAD 100
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 45/82 (54%)
Query: 97 EDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGA 156
+DG TPLH AA G+ + LL+ A+VN++ +G++ +H A G E ++ +L+ GA
Sbjct: 7 KDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGA 66
Query: 157 EPSTPDIHGGYPIHYASQMCGH 178
+ + G P H A + H
Sbjct: 67 DVNARSKDGNTPEHLAKKNGHH 88
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 51/101 (50%), Gaps = 2/101 (1%)
Query: 28 TMEGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEV 87
+ +G T L AA+ G EVK +L S+ V R + T LH A+N + +L
Sbjct: 6 SKDGNTPLHNAAKNGHAEEVKKLL-SKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAK 64
Query: 88 APDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQ 128
D + A +DG TP HLA G+ ++ L A A+VN++
Sbjct: 65 GAD-VNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNAR 104
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 52.0 bits (123), Expect = 4e-07, Method: Composition-based stats.
Identities = 33/85 (38%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 212 QPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVD 271
+ +L AA AG D + L+ GA+V A DK+G T LH AA GH E ++ L+ GADV+
Sbjct: 8 KKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLE-AGADVN 66
Query: 272 VIDTNGCSALFYAVTLGHADATTLL 296
D G +A ++ G+ D +L
Sbjct: 67 AQDKFGKTAFDISIDNGNEDLAEIL 91
Score = 38.9 bits (89), Expect = 0.004, Method: Composition-based stats.
Identities = 21/46 (45%), Positives = 26/46 (56%)
Query: 267 GADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
GADV D NG + L A GH + LLL+ GA N QD+ G+T
Sbjct: 29 GADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFGKT 74
Score = 38.5 bits (88), Expect = 0.005, Method: Composition-based stats.
Identities = 19/43 (44%), Positives = 29/43 (67%)
Query: 92 IEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHS 134
+ A D++G TPLHLAA G++ ++ LL A+VN+QD G +
Sbjct: 32 VAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFGKT 74
Score = 37.0 bits (84), Expect = 0.014, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query: 35 LMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIEA 94
L+ AA+ G+D EV+ ++A+ + V +D+ T LH A N L + +LE D + A
Sbjct: 10 LLEAARAGQDDEVRILMANGAD-VAAKDKNGSTPLHLAARNGHLEVVKLLLEAGAD-VNA 67
Query: 95 ADEDGYTPLHLAAIAGNVPLIHTL 118
D+ G T ++ GN L L
Sbjct: 68 QDKFGKTAFDISIDNGNEDLAEIL 91
Score = 33.1 bits (74), Expect = 0.22, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 28/53 (52%)
Query: 210 GRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETL 262
G P+ AA G + + L++AGA+V A DK G TA + G+ + E L
Sbjct: 39 GSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 91
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 210 GRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGAD 269
G P+ WA G S + L+ GA + ++ T LH AAS GHR+ ++ L+ AD
Sbjct: 39 GFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQY-KAD 97
Query: 270 VDVIDTNGCSALFYAVTLGHADATTLLLQYGA 301
++ ++ +G L YA G L+ GA
Sbjct: 98 INAVNEHGNVPLHYACFWGQDQVAEDLVANGA 129
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 67/145 (46%), Gaps = 3/145 (2%)
Query: 30 EGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHY-CAENTILSCAETILEVA 88
E + ++G V+ L + N + + D + LH+ C E I+ A
Sbjct: 4 EFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGA 63
Query: 89 PDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEAL 148
I + TPLHLAA G+ ++ LL ++A++N+ + G+ +H+A G+ +
Sbjct: 64 --RINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVA 121
Query: 149 ETVLSAGAEPSTPDIHGGYPIHYAS 173
E +++ GA S + +G P+ A
Sbjct: 122 EDLVANGALVSICNKYGEMPVDKAK 146
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 240 DKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQY 299
D G + LH A G +E LI + GA ++V++ + L A + GH D LLQY
Sbjct: 36 DDHGFSPLHWACREGRSAVVEMLI-MRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQY 94
Query: 300 GATPN 304
A N
Sbjct: 95 KADIN 99
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 210 GRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGAD 269
G P+ WA G S + L+ GA + ++ T LH AAS GHR+ ++ L+ AD
Sbjct: 34 GFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQY-KAD 92
Query: 270 VDVIDTNGCSALFYAVTLGHADATTLLLQYGA 301
++ ++ +G L YA G L+ GA
Sbjct: 93 INAVNEHGNVPLHYACFWGQDQVAEDLVANGA 124
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 65/135 (48%), Gaps = 3/135 (2%)
Query: 40 QQGKDAEVKAILASRPNAVRERDRTRKTVLHY-CAENTILSCAETILEVAPDLIEAADED 98
++G V+ L + N + + D + LH+ C E I+ A I +
Sbjct: 9 REGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGAR--INVMNRG 66
Query: 99 GYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEP 158
TPLHLAA G+ ++ LL ++A++N+ + G+ +H+A G+ + E +++ GA
Sbjct: 67 DDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALV 126
Query: 159 STPDIHGGYPIHYAS 173
S + +G P+ A
Sbjct: 127 SICNKYGEMPVDKAK 141
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 240 DKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQY 299
D G + LH A G +E LI + GA ++V++ + L A + GH D LLQY
Sbjct: 31 DDHGFSPLHWACREGRSAVVEMLI-MRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQY 89
Query: 300 GATPN 304
A N
Sbjct: 90 KADIN 94
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 53/101 (52%), Gaps = 2/101 (1%)
Query: 61 RDRTRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLA 120
+DRT V+H A L +T+LE D + D +G PLHLAA G++ ++ L+
Sbjct: 66 KDRTGNAVIHDAARAGFLDTLQTLLEFQAD-VNIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
Query: 121 HRA-NVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPST 160
H A NV ++++G + A + G E + + + GA +T
Sbjct: 125 HTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAGGAT 165
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 99 GYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEP 158
G T L + + GN + LL AN + +D G++V+H A G ++ L+T+L A+
Sbjct: 38 GRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADV 96
Query: 159 STPDIHGGYPIHYASQ 174
+ D G P+H A++
Sbjct: 97 NIEDNEGNLPLHLAAK 112
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 89 PDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEAL 148
PDL D G +H AA AG + + TLL +A+VN +DNEG+ +H A G + +
Sbjct: 63 PDL---KDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVV 119
Query: 149 ETVLS 153
E ++
Sbjct: 120 EFLVK 124
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 215 LWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVID 274
L G+ + L+ GAN + D+ G +H AA G + L+TL+ ADV++ D
Sbjct: 42 LQVMKLGNPEIARRLLLRGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQ-ADVNIED 100
Query: 275 TNGCSALFYAVTLGHADATTLLLQYGAT 302
G L A GH L+++ A+
Sbjct: 101 NEGNLPLHLAAKEGHLRVVEFLVKHTAS 128
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 40/85 (47%)
Query: 217 AASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTN 276
AA AG D + L++ A+V D +G LH AA GH +E L+ ++V +
Sbjct: 77 AARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHK 136
Query: 277 GCSALFYAVTLGHADATTLLLQYGA 301
G +A A G + +L+ GA
Sbjct: 137 GDTACDLARLYGRNEVVSLMQANGA 161
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 55/106 (51%), Gaps = 1/106 (0%)
Query: 66 KTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANV 125
+T+LH + + E +L+ D D G+TPLH A G++ ++ LL H+A V
Sbjct: 11 ETLLHIASIKGDIPSVEYLLQNGSD-PNVKDHAGWTPLHEACNHGHLKVVELLLQHKALV 69
Query: 126 NSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHY 171
N+ + S +H A G V+ ++ +LS GA + +I G P+ Y
Sbjct: 70 NTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDY 115
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 217 AASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTN 276
A+ G ++ L++ G++ D G T LH A + GH + +E L+ A V+
Sbjct: 17 ASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQ-HKALVNTTGYQ 75
Query: 277 GCSALFYAVTLGHADATTLLLQYGATPN 304
S L A GH D LLL YGA+ N
Sbjct: 76 NDSPLHDAAKNGHVDIVKLLLSYGASRN 103
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 43/76 (56%)
Query: 99 GYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEP 158
G T LH+A+I G++P + LL + ++ N +D+ G + +H A G ++ +E +L A
Sbjct: 10 GETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALV 69
Query: 159 STPDIHGGYPIHYASQ 174
+T P+H A++
Sbjct: 70 NTTGYQNDSPLHDAAK 85
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Query: 129 DNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHA 179
++ G +++H A++ G++ ++E +L G++P+ D G P+H A C H
Sbjct: 7 NHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEA---CNHG 54
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 53/101 (52%), Gaps = 2/101 (1%)
Query: 61 RDRTRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLA 120
+DRT V+H A L +T+LE D + D +G PLHLAA G++ ++ L+
Sbjct: 66 KDRTGFAVIHDAARAGFLDTLQTLLEFQAD-VNIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
Query: 121 HRA-NVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPST 160
H A NV ++++G + A + G E + + + GA +T
Sbjct: 125 HTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAGGAT 165
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 89 PDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEAL 148
PDL D G+ +H AA AG + + TLL +A+VN +DNEG+ +H A G + +
Sbjct: 63 PDL---KDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVV 119
Query: 149 ETVLS 153
E ++
Sbjct: 120 EFLVK 124
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 99 GYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEP 158
G T L + + GN + LL AN + +D G +V+H A G ++ L+T+L A+
Sbjct: 38 GRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADV 96
Query: 159 STPDIHGGYPIHYASQ 174
+ D G P+H A++
Sbjct: 97 NIEDNEGNLPLHLAAK 112
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 215 LWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVID 274
L G+ + L+ GAN + D+ G +H AA G + L+TL+ ADV++ D
Sbjct: 42 LQVMKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQ-ADVNIED 100
Query: 275 TNGCSALFYAVTLGHADATTLLLQYGAT 302
G L A GH L+++ A+
Sbjct: 101 NEGNLPLHLAAKEGHLRVVEFLVKHTAS 128
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 40/85 (47%)
Query: 217 AASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTN 276
AA AG D + L++ A+V D +G LH AA GH +E L+ ++V +
Sbjct: 77 AARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHK 136
Query: 277 GCSALFYAVTLGHADATTLLLQYGA 301
G +A A G + +L+ GA
Sbjct: 137 GDTACDLARLYGRNEVVSLMQANGA 161
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 61/229 (26%), Positives = 90/229 (39%), Gaps = 28/229 (12%)
Query: 99 GYTPLHLAAIAG---------------NVPLIHTLLAHRANVN-SQDNEGHSVVHWATVC 142
G TPL +AA+ G +I LLA A +N + D G + +H A
Sbjct: 2 GLTPLMIAAVRGGGLDTGEDIENNEDSTAQVISDLLAQGAELNATMDKTGETSLHLAARF 61
Query: 143 GEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAXXXXXXXXXXX 202
+A + +L AGA+ ++ D G P+H A A MG
Sbjct: 62 ARADAAKRLLDAGADANSQDNTGRTPLHAAVA----ADAMG-------VFQILLRNRATN 110
Query: 203 XXXXXXXGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETL 262
G P++ AA + L+ A A++ A D G TALH AA+ + E + L
Sbjct: 111 LNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNIL 170
Query: 263 ITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGR 311
+ + A+ D D + LF A G +A+ LL A D R
Sbjct: 171 L-MHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFANREITDHMDR 218
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 50/114 (43%)
Query: 61 RDRTRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLA 120
+D T +T LH + + +L + A DG TPL LAA ++ L+
Sbjct: 80 QDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLIT 139
Query: 121 HRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQ 174
A++N+ DN G + +HWA EA+ +L A D P+ A++
Sbjct: 140 ADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAR 193
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 55/132 (41%), Gaps = 1/132 (0%)
Query: 47 VKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLA 106
+ +L +R + R T L A I E ++ D I AAD G T LH A
Sbjct: 100 FQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADAD-INAADNSGKTALHWA 158
Query: 107 AIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGG 166
A N ++ LL H AN ++QD++ + + A G EA + +L A D
Sbjct: 159 AAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFANREITDHMDR 218
Query: 167 YPIHYASQMCGH 178
P AS+ H
Sbjct: 219 LPRDVASERLHH 230
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 47/118 (39%), Gaps = 35/118 (29%)
Query: 229 LVKAGANVEAHDKDGLTALHCAA--------------------SRGH------------- 255
L+ AGA+ + D G T LH A +R H
Sbjct: 70 LLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLA 129
Query: 256 -RECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
+E LIT AD++ D +G +AL +A + + +A +LL + A + QD K T
Sbjct: 130 IEGMVEDLIT-ADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDET 186
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 51/97 (52%), Gaps = 2/97 (2%)
Query: 61 RDRTRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLA 120
+DRT V+H A L +T+LE D + D +G PLHLAA G++ ++ L+
Sbjct: 66 KDRTGFAVIHDAARAGFLDTLQTLLEFQAD-VNIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
Query: 121 HRA-NVNSQDNEGHSVVHWATVCGEVEALETVLSAGA 156
H A NV ++++G + A + G E + + + GA
Sbjct: 125 HTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 89 PDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEAL 148
PDL D G+ +H AA AG + + TLL +A+VN +DNEG+ +H A G + +
Sbjct: 63 PDL---KDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVV 119
Query: 149 ETVLS 153
E ++
Sbjct: 120 EFLVK 124
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 99 GYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEP 158
G T L + + GN + LL AN + +D G +V+H A G ++ L+T+L A+
Sbjct: 38 GRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADV 96
Query: 159 STPDIHGGYPIHYASQ 174
+ D G P+H A++
Sbjct: 97 NIEDNEGNLPLHLAAK 112
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 215 LWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVID 274
L G+ + L+ GAN + D+ G +H AA G + L+TL+ ADV++ D
Sbjct: 42 LQVMKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQ-ADVNIED 100
Query: 275 TNGCSALFYAVTLGHADATTLLLQYGAT 302
G L A GH L+++ A+
Sbjct: 101 NEGNLPLHLAAKEGHLRVVEFLVKHTAS 128
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 40/85 (47%)
Query: 217 AASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTN 276
AA AG D + L++ A+V D +G LH AA GH +E L+ ++V +
Sbjct: 77 AARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHK 136
Query: 277 GCSALFYAVTLGHADATTLLLQYGA 301
G +A A G + +L+ GA
Sbjct: 137 GDTACDLARLYGRNEVVSLMQANGA 161
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 53/101 (52%), Gaps = 2/101 (1%)
Query: 61 RDRTRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLA 120
+DRT V+H A L +T+LE D + D +G PLHLAA G++ ++ L+
Sbjct: 66 KDRTGFAVIHDAARAGFLDTLQTLLENQAD-VNIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
Query: 121 HRA-NVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPST 160
H A NV ++++G + A + G E + + + GA +T
Sbjct: 125 HTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAGGAT 165
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Query: 89 PDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEAL 148
PDL D G+ +H AA AG + + TLL ++A+VN +DNEG+ +H A G + +
Sbjct: 63 PDL---KDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAKEGHLRVV 119
Query: 149 ETVLS 153
E ++
Sbjct: 120 EFLVK 124
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 99 GYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEP 158
G T L + + GN + LL AN + +D G +V+H A G ++ L+T+L A+
Sbjct: 38 GRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADV 96
Query: 159 STPDIHGGYPIHYASQ 174
+ D G P+H A++
Sbjct: 97 NIEDNEGNLPLHLAAK 112
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 215 LWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVID 274
L G+ + L+ GAN + D+ G +H AA G + L+TL+ ADV++ D
Sbjct: 42 LQVMKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLE-NQADVNIED 100
Query: 275 TNGCSALFYAVTLGHADATTLLLQYGAT 302
G L A GH L+++ A+
Sbjct: 101 NEGNLPLHLAAKEGHLRVVEFLVKHTAS 128
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 40/85 (47%)
Query: 217 AASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTN 276
AA AG D + L++ A+V D +G LH AA GH +E L+ ++V +
Sbjct: 77 AARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHK 136
Query: 277 GCSALFYAVTLGHADATTLLLQYGA 301
G +A A G + +L+ GA
Sbjct: 137 GDTACDLARLYGRNEVVSLMQANGA 161
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 53/101 (52%), Gaps = 2/101 (1%)
Query: 61 RDRTRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLA 120
+DRT V+H A L +T+LE D + D +G PLHLAA G++ ++ L+
Sbjct: 66 KDRTGFAVIHDAARAGQLDTLQTLLEFQAD-VNIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
Query: 121 HRA-NVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPST 160
H A NV ++++G + A + G E + + + GA +T
Sbjct: 125 HTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAGGAT 165
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 99 GYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEP 158
G T L + + GN + LL AN + +D G +V+H A G+++ L+T+L A+
Sbjct: 38 GRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADV 96
Query: 159 STPDIHGGYPIHYASQ 174
+ D G P+H A++
Sbjct: 97 NIEDNEGNLPLHLAAK 112
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 89 PDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEAL 148
PDL D G+ +H AA AG + + TLL +A+VN +DNEG+ +H A G + +
Sbjct: 63 PDL---KDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVV 119
Query: 149 ETVLS 153
E ++
Sbjct: 120 EFLVK 124
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 215 LWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVID 274
L G+ + L+ GAN + D+ G +H AA G + L+TL+ ADV++ D
Sbjct: 42 LQVMKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQ-ADVNIED 100
Query: 275 TNGCSALFYAVTLGHADATTLLLQYGAT 302
G L A GH L+++ A+
Sbjct: 101 NEGNLPLHLAAKEGHLRVVEFLVKHTAS 128
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 40/85 (47%)
Query: 217 AASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTN 276
AA AG D + L++ A+V D +G LH AA GH +E L+ ++V +
Sbjct: 77 AARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHK 136
Query: 277 GCSALFYAVTLGHADATTLLLQYGA 301
G +A A G + +L+ GA
Sbjct: 137 GDTACDLARLYGRNEVVSLMQANGA 161
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 56/106 (52%), Gaps = 6/106 (5%)
Query: 213 PILWAASAGSSDAILALVK-AGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVD 271
P L+A + G ++ + ++K A ++ H++ G AL AA +GH + ++ L+ D+D
Sbjct: 75 PYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDID 134
Query: 272 VIDTNGCSALFYAVTLG-----HADATTLLLQYGATPNRQDRKGRT 312
+ G +AL AV L + D LL++ GA + +D GRT
Sbjct: 135 FQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRT 180
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/221 (21%), Positives = 89/221 (40%), Gaps = 49/221 (22%)
Query: 84 ILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCG 143
IL+ ++ D +G TPL++A ++ + L+ A++N Q++ S +A G
Sbjct: 24 ILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQG 83
Query: 144 EVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAXXXXXXXXXXXX 203
E L +L + +TPD++ H GN
Sbjct: 84 RTEILAYML----KHATPDLNK------------HNRYGGN------------------- 108
Query: 204 XXXXXXGRQPILWAASAGSSDAILALVKAG-ANVEAHDKDGLTAL-HCAASRGHRECLET 261
++ AA G D + L++ G +++ + G TAL R + +
Sbjct: 109 ---------ALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQD 159
Query: 262 LITLC---GADVDVIDTNGCSALFYAVTLGHADATTLLLQY 299
++ L GAD + D +G +A+ YA G+ + + +L QY
Sbjct: 160 IVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQY 200
Score = 30.8 bits (68), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 39/91 (42%)
Query: 210 GRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGAD 269
G P+ A + AL+ GA++ + + A ++G E L ++ D
Sbjct: 39 GNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPD 98
Query: 270 VDVIDTNGCSALFYAVTLGHADATTLLLQYG 300
++ + G +AL A GH D LLL+ G
Sbjct: 99 LNKHNRYGGNALIPAAEKGHIDNVKLLLEDG 129
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 45/101 (44%), Gaps = 1/101 (0%)
Query: 212 QPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVD 271
+ +WA G D + V G +V + G LH AA G E LE L+ L GAD++
Sbjct: 9 KEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLL-LKGADIN 67
Query: 272 VIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
D + + L AV GH LLL GA + G T
Sbjct: 68 APDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLT 108
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 210 GRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGAD 269
GR+P+ +AA G + + L+ GA++ A DK +T L A GH C++ L++ GAD
Sbjct: 40 GRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSK-GAD 98
Query: 270 VDVIDTNGCSAL 281
V +G +A
Sbjct: 99 KTVKGPDGLTAF 110
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 32/60 (53%)
Query: 110 GNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPI 169
G++ + +A +VN G +H+A CG++E LE +L GA+ + PD H P+
Sbjct: 18 GDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPL 77
Score = 35.4 bits (80), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 45/98 (45%), Gaps = 2/98 (2%)
Query: 35 LMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIEA 94
M+A + G EVK +A + R + RK LHY A+ L E +L D I A
Sbjct: 11 FMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKP-LHYAADCGQLEILEFLLLKGAD-INA 68
Query: 95 ADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEG 132
D+ TPL A G+V + LL+ A+ + +G
Sbjct: 69 PDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDG 106
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 45/101 (44%), Gaps = 1/101 (0%)
Query: 212 QPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVD 271
+ +WA G D + V G +V + G LH AA G E LE L+ L GAD++
Sbjct: 4 KEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLL-LKGADIN 62
Query: 272 VIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
D + + L AV GH LLL GA + G T
Sbjct: 63 APDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLT 103
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 210 GRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGAD 269
GR+P+ +AA G + + L+ GA++ A DK +T L A GH C++ L++ GAD
Sbjct: 35 GRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSK-GAD 93
Query: 270 VDVIDTNGCSAL 281
V +G +AL
Sbjct: 94 KTVKGPDGLTAL 105
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 32/60 (53%)
Query: 110 GNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPI 169
G++ + +A +VN G +H+A CG++E LE +L GA+ + PD H P+
Sbjct: 13 GDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPL 72
Score = 35.0 bits (79), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 45/99 (45%), Gaps = 2/99 (2%)
Query: 34 SLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIE 93
M+A + G EVK +A + R + RK LHY A+ L E +L D I
Sbjct: 5 EFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKP-LHYAADCGQLEILEFLLLKGAD-IN 62
Query: 94 AADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEG 132
A D+ TPL A G+V + LL+ A+ + +G
Sbjct: 63 APDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDG 101
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 1/103 (0%)
Query: 210 GRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGAD 269
G P++WA++ G + + L++ GA+ K+ +AL A++ G+ + + L+ D
Sbjct: 36 GFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLE-RDVD 94
Query: 270 VDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
+++ D NG + L YAV H LL GA + G T
Sbjct: 95 INIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYT 137
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 36/165 (21%), Positives = 64/165 (38%), Gaps = 46/165 (27%)
Query: 125 VNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGN 184
VN D G + + WA+ GE+E + +L GA+P H ++ A +
Sbjct: 29 VNKPDERGFTPLIWASAFGEIETVRFLLEWGADP-----------HILAKERESALSL-- 75
Query: 185 DVRVGLAXXXXXXXXXXXXXXXXXXGRQPILWAASAGSSDAILALVKAGANVEAHDKDGL 244
A++ G +D + L++ ++ +D +G
Sbjct: 76 --------------------------------ASTGGYTDIVGLLLERDVDINIYDWNGG 103
Query: 245 TALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGH 289
T L A H +C+E L+ GAD+ +G + + AV LG+
Sbjct: 104 TPLLYAVRGNHVKCVEALLA-RGADLTTEADSGYTPMDLAVALGY 147
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 53/115 (46%), Gaps = 6/115 (5%)
Query: 31 GATSLMYAAQQGKDAEVKAIL--ASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVA 88
G T L++A+ G+ V+ +L + P+ + + R++ L + +LE
Sbjct: 36 GFTPLIWASAFGEIETVRFLLEWGADPHILA---KERESALSLASTGGYTDIVGLLLERD 92
Query: 89 PDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCG 143
D I D +G TPL A +V + LLA A++ ++ + G++ + A G
Sbjct: 93 VD-INIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALG 146
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 1/103 (0%)
Query: 210 GRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGAD 269
G P++WA++ G + + L++ GA+ K+ +AL A++ G+ + + L+ D
Sbjct: 36 GFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLE-RDVD 94
Query: 270 VDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
+++ D NG + L YAV H LL GA + G T
Sbjct: 95 INIYDWNGGTPLLYAVHGNHVKCVEALLARGADLTTEADSGYT 137
Score = 35.8 bits (81), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 36/165 (21%), Positives = 64/165 (38%), Gaps = 46/165 (27%)
Query: 125 VNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGN 184
VN D G + + WA+ GE+E + +L GA+P H ++ A +
Sbjct: 29 VNKPDERGFTPLIWASAFGEIETVRFLLEWGADP-----------HILAKERESALSL-- 75
Query: 185 DVRVGLAXXXXXXXXXXXXXXXXXXGRQPILWAASAGSSDAILALVKAGANVEAHDKDGL 244
A++ G +D + L++ ++ +D +G
Sbjct: 76 --------------------------------ASTGGYTDIVGLLLERDVDINIYDWNGG 103
Query: 245 TALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGH 289
T L A H +C+E L+ GAD+ +G + + AV LG+
Sbjct: 104 TPLLYAVHGNHVKCVEALLA-RGADLTTEADSGYTPMDLAVALGY 147
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 53/115 (46%), Gaps = 6/115 (5%)
Query: 31 GATSLMYAAQQGKDAEVKAIL--ASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVA 88
G T L++A+ G+ V+ +L + P+ + + R++ L + +LE
Sbjct: 36 GFTPLIWASAFGEIETVRFLLEWGADPHILA---KERESALSLASTGGYTDIVGLLLERD 92
Query: 89 PDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCG 143
D I D +G TPL A +V + LLA A++ ++ + G++ + A G
Sbjct: 93 VD-INIYDWNGGTPLLYAVHGNHVKCVEALLARGADLTTEADSGYTPMDLAVALG 146
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 71/162 (43%), Gaps = 3/162 (1%)
Query: 13 NLVWENGSFDKKVHNTMEGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYC 72
+ +++ S + T G T+L AA+ + K +L + +A + D +T LH
Sbjct: 6 DFIYQGASLHNQTDRT--GETALHLAARYSRSDAAKRLLEASADAXIQ-DNMGRTPLHAA 62
Query: 73 AENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEG 132
+ +L ++A DG TPL LAA ++ L+ A+VN+ D+ G
Sbjct: 63 VSADAQGVFQILLRNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLG 122
Query: 133 HSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQ 174
S +HWA V+A +L GA + P+ A++
Sbjct: 123 KSALHWAAAVNNVDAAVVLLKNGANKDMQNNKEETPLFLAAR 164
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 53/104 (50%), Gaps = 2/104 (1%)
Query: 210 GRQPILWAASAGSSDAILALVKAGA-NVEAHDKDGLTALHCAASRGHRECLETLITLCGA 268
GR P+ A SA + L++ A +++A DG T L AA LE LI A
Sbjct: 55 GRTPLHAAVSADAQGVFQILLRNRATDLDARMHDGTTPLILAARLALEGMLEDLIN-SHA 113
Query: 269 DVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
DV+ +D G SAL +A + + DA +LL+ GA + Q+ K T
Sbjct: 114 DVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNKEET 157
Score = 31.2 bits (69), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 33/79 (41%)
Query: 210 GRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGAD 269
G + AA SDA L++A A+ D G T LH A S + + L+ D
Sbjct: 22 GETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAVSADAQGVFQILLRNRATD 81
Query: 270 VDVIDTNGCSALFYAVTLG 288
+D +G + L A L
Sbjct: 82 LDARMHDGTTPLILAARLA 100
Score = 30.8 bits (68), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 77/207 (37%), Gaps = 18/207 (8%)
Query: 96 DEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAG 155
D G T LHLAA LL A+ QDN G + +H A + +L
Sbjct: 19 DRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAVSADAQGVFQILLRNR 78
Query: 156 AEPSTPDIHGGY-PIHYASQMC--GHASEMGNDVRVGLAXXXXXXXXXXXXXXXXXXGRQ 212
A +H G P+ A+++ G ++ N G+
Sbjct: 79 ATDLDARMHDGTTPLILAARLALEGMLEDLIN--------------SHADVNAVDDLGKS 124
Query: 213 PILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDV 272
+ WAA+ + DA + L+K GAN + + T L AA G E + L+ A+ D+
Sbjct: 125 ALHWAAAVNNVDAAVVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHF-ANRDI 183
Query: 273 IDTNGCSALFYAVTLGHADATTLLLQY 299
D A H D LL +Y
Sbjct: 184 TDHMDRLPRDIAQERMHHDIVRLLDEY 210
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 71/162 (43%), Gaps = 3/162 (1%)
Query: 13 NLVWENGSFDKKVHNTMEGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYC 72
+ +++ S + T GAT+L AA + K +L + +A +D +T LH
Sbjct: 41 DFIYQGASLHNQTDRT--GATALHLAAAYSRSDAAKRLLEASADA-NIQDNMGRTPLHAA 97
Query: 73 AENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEG 132
+ ++ ++A DG TPL LAA ++ L+ A+VN+ D+ G
Sbjct: 98 VSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLG 157
Query: 133 HSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQ 174
S +HWA V+A +L GA + P+ A++
Sbjct: 158 KSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAR 199
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 53/104 (50%), Gaps = 2/104 (1%)
Query: 210 GRQPILWAASAGSSDAILALVKAGA-NVEAHDKDGLTALHCAASRGHRECLETLITLCGA 268
GR P+ A SA + L++ A +++A DG T L AA LE LI A
Sbjct: 90 GRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLIN-SHA 148
Query: 269 DVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
DV+ +D G SAL +A + + DA +LL+ GA + Q+ + T
Sbjct: 149 DVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREET 192
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 54/228 (23%), Positives = 92/228 (40%), Gaps = 26/228 (11%)
Query: 98 DGYTPLHLAAIAG------------NVP-LIHTLLAHRANVNSQ-DNEGHSVVHWATVCG 143
DG+TPL +A+ +G + P +I + A++++Q D G + +H A
Sbjct: 9 DGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGATALHLAAAYS 68
Query: 144 EVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAXXXXXXXXXXXX 203
+A + +L A A+ + D G P+H A A G
Sbjct: 69 RSDAAKRLLEASADANIQDNMGRTPLHAAVS----ADAQG-------VFQILIRNRATDL 117
Query: 204 XXXXXXGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLI 263
G P++ AA + L+ + A+V A D G +ALH AA+ + + L+
Sbjct: 118 DARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLL 177
Query: 264 TLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGR 311
GA+ D+ + + LF A G + +LL + A + D R
Sbjct: 178 K-NGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDR 224
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 66/171 (38%), Gaps = 17/171 (9%)
Query: 96 DEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAG 155
D G T LHLAA LL A+ N QDN G + +H A + ++
Sbjct: 54 DRTGATALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNR 113
Query: 156 AEPSTPDIHGGY-PIHYASQMC--GHASEMGNDVRVGLAXXXXXXXXXXXXXXXXXXGRQ 212
A +H G P+ A+++ G ++ N G+
Sbjct: 114 ATDLDARMHDGTTPLILAARLAVEGMLEDLIN--------------SHADVNAVDDLGKS 159
Query: 213 PILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLI 263
+ WAA+ + DA + L+K GAN + + T L AA G E + L+
Sbjct: 160 ALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLL 210
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 19/39 (48%)
Query: 274 DTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
D G +AL A +DA LL+ A N QD GRT
Sbjct: 54 DRTGATALHLAAAYSRSDAAKRLLEASADANIQDNMGRT 92
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 44/88 (50%), Gaps = 4/88 (4%)
Query: 87 VAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVE 146
V PD A + G T L + + G+ + LL A+ N QD G S VH A G ++
Sbjct: 33 VHPD---ALNRFGKTALQVM-MFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLD 88
Query: 147 ALETVLSAGAEPSTPDIHGGYPIHYASQ 174
L+ ++ GA+ + PD G PIH A Q
Sbjct: 89 TLKVLVEHGADVNVPDGTGALPIHLAVQ 116
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 221 GSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSA 280
GS+ L L+K GA+ D G + +H AA G + L+ L+ GADV+V D G
Sbjct: 52 GSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVE-HGADVNVPDGTGALP 110
Query: 281 LFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
+ AV GH A L + +R+D +G T
Sbjct: 111 IHLAVQEGHT-AVVSFLAAESDLHRRDARGLT 141
Score = 35.0 bits (79), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 39/94 (41%), Gaps = 2/94 (2%)
Query: 210 GRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGAD 269
G P+ AA G D + LV+ GA+V D G +H A GH + L +D
Sbjct: 74 GTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA--AESD 131
Query: 270 VDVIDTNGCSALFYAVTLGHADATTLLLQYGATP 303
+ D G + L A+ G D +L + P
Sbjct: 132 LHRRDARGLTPLELALQRGAQDLVDILQGHMVAP 165
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 44/88 (50%), Gaps = 4/88 (4%)
Query: 87 VAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVE 146
V PD A + G T L + + G+ + LL A+ N QD G S VH A G ++
Sbjct: 27 VHPD---ALNRFGKTALQVM-MFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLD 82
Query: 147 ALETVLSAGAEPSTPDIHGGYPIHYASQ 174
L+ ++ GA+ + PD G PIH A Q
Sbjct: 83 TLKVLVEHGADVNVPDGTGALPIHLAVQ 110
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 221 GSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSA 280
GS+ L L+K GA+ D G + +H AA G + L+ L+ GADV+V D G
Sbjct: 46 GSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVE-HGADVNVPDGTGALP 104
Query: 281 LFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
+ AV GH A L + +R+D +G T
Sbjct: 105 IHLAVQEGHT-AVVSFLAAESDLHRRDARGLT 135
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 37/87 (42%), Gaps = 2/87 (2%)
Query: 210 GRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGAD 269
G P+ AA G D + LV+ GA+V D G +H A GH + L +D
Sbjct: 68 GTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA--AESD 125
Query: 270 VDVIDTNGCSALFYAVTLGHADATTLL 296
+ D G + L A+ G D +L
Sbjct: 126 LHRRDARGLTPLELALQRGAQDLVDIL 152
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 71/162 (43%), Gaps = 3/162 (1%)
Query: 13 NLVWENGSFDKKVHNTMEGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYC 72
+ +++ S + T G T+L AA+ + K +L + +A +D +T LH
Sbjct: 41 DFIYQGASLHNQTDRT--GETALHLAARYSRSDAAKRLLEASADA-NIQDNMGRTPLHAA 97
Query: 73 AENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEG 132
+ ++ ++A DG TPL LAA ++ L+ A+VN+ D+ G
Sbjct: 98 VSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLG 157
Query: 133 HSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQ 174
S +HWA V+A +L GA + P+ A++
Sbjct: 158 KSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAR 199
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 53/104 (50%), Gaps = 2/104 (1%)
Query: 210 GRQPILWAASAGSSDAILALVKAGA-NVEAHDKDGLTALHCAASRGHRECLETLITLCGA 268
GR P+ A SA + L++ A +++A DG T L AA LE LI A
Sbjct: 90 GRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLIN-SHA 148
Query: 269 DVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
DV+ +D G SAL +A + + DA +LL+ GA + Q+ + T
Sbjct: 149 DVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREET 192
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 54/228 (23%), Positives = 92/228 (40%), Gaps = 26/228 (11%)
Query: 98 DGYTPLHLAAIAG------------NVP-LIHTLLAHRANVNSQ-DNEGHSVVHWATVCG 143
DG+TPL +A+ +G + P +I + A++++Q D G + +H A
Sbjct: 9 DGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYS 68
Query: 144 EVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAXXXXXXXXXXXX 203
+A + +L A A+ + D G P+H A A G
Sbjct: 69 RSDAAKRLLEASADANIQDNMGRTPLHAAVS----ADAQG-------VFQILIRNRATDL 117
Query: 204 XXXXXXGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLI 263
G P++ AA + L+ + A+V A D G +ALH AA+ + + L+
Sbjct: 118 DARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLL 177
Query: 264 TLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGR 311
GA+ D+ + + LF A G + +LL + A + D R
Sbjct: 178 K-NGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDR 224
Score = 32.0 bits (71), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 66/171 (38%), Gaps = 17/171 (9%)
Query: 96 DEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAG 155
D G T LHLAA LL A+ N QDN G + +H A + ++
Sbjct: 54 DRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNR 113
Query: 156 AEPSTPDIHGGY-PIHYASQMC--GHASEMGNDVRVGLAXXXXXXXXXXXXXXXXXXGRQ 212
A +H G P+ A+++ G ++ N G+
Sbjct: 114 ATDLDARMHDGTTPLILAARLAVEGMLEDLIN--------------SHADVNAVDDLGKS 159
Query: 213 PILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLI 263
+ WAA+ + DA + L+K GAN + + T L AA G E + L+
Sbjct: 160 ALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLL 210
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 19/39 (48%)
Query: 274 DTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
D G +AL A +DA LL+ A N QD GRT
Sbjct: 54 DRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRT 92
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 71/162 (43%), Gaps = 3/162 (1%)
Query: 13 NLVWENGSFDKKVHNTMEGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYC 72
+ +++ S + T G T+L AA+ + K +L + +A +D +T LH
Sbjct: 42 DFIYQGASLHNQTDRT--GETALHLAARYSRSDAAKRLLEASADA-NIQDNMGRTPLHAA 98
Query: 73 AENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEG 132
+ ++ ++A DG TPL LAA ++ L+ A+VN+ D+ G
Sbjct: 99 VSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLG 158
Query: 133 HSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQ 174
S +HWA V+A +L GA + P+ A++
Sbjct: 159 KSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAR 200
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 53/104 (50%), Gaps = 2/104 (1%)
Query: 210 GRQPILWAASAGSSDAILALVKAGA-NVEAHDKDGLTALHCAASRGHRECLETLITLCGA 268
GR P+ A SA + L++ A +++A DG T L AA LE LI A
Sbjct: 91 GRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLIN-SHA 149
Query: 269 DVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
DV+ +D G SAL +A + + DA +LL+ GA + Q+ + T
Sbjct: 150 DVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREET 193
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 54/228 (23%), Positives = 92/228 (40%), Gaps = 26/228 (11%)
Query: 98 DGYTPLHLAAIAG------------NVP-LIHTLLAHRANVNSQ-DNEGHSVVHWATVCG 143
DG+TPL +A+ +G + P +I + A++++Q D G + +H A
Sbjct: 10 DGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYS 69
Query: 144 EVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAXXXXXXXXXXXX 203
+A + +L A A+ + D G P+H A A G
Sbjct: 70 RSDAAKRLLEASADANIQDNMGRTPLHAAVS----ADAQG-------VFQILIRNRATDL 118
Query: 204 XXXXXXGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLI 263
G P++ AA + L+ + A+V A D G +ALH AA+ + + L+
Sbjct: 119 DARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLL 178
Query: 264 TLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGR 311
GA+ D+ + + LF A G + +LL + A + D R
Sbjct: 179 K-NGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDR 225
Score = 32.0 bits (71), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 78/207 (37%), Gaps = 18/207 (8%)
Query: 96 DEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAG 155
D G T LHLAA LL A+ N QDN G + +H A + ++
Sbjct: 55 DRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNR 114
Query: 156 AEPSTPDIHGGY-PIHYASQMC--GHASEMGNDVRVGLAXXXXXXXXXXXXXXXXXXGRQ 212
A +H G P+ A+++ G ++ N G+
Sbjct: 115 ATDLDARMHDGTTPLILAARLAVEGMLEDLIN--------------SHADVNAVDDLGKS 160
Query: 213 PILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDV 272
+ WAA+ + DA + L+K GAN + + T L AA G E + L+ A+ D+
Sbjct: 161 ALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHF-ANRDI 219
Query: 273 IDTNGCSALFYAVTLGHADATTLLLQY 299
D A H D LL +Y
Sbjct: 220 TDHMDRLPRDIAQERMHHDIVRLLDEY 246
Score = 28.1 bits (61), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 19/39 (48%)
Query: 274 DTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
D G +AL A +DA LL+ A N QD GRT
Sbjct: 55 DRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRT 93
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 69/155 (44%), Gaps = 17/155 (10%)
Query: 33 TSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLI 92
+ L+ AA++ + +L V +R +T LH A L A ++E AP+L+
Sbjct: 5 SPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELV 64
Query: 93 ----EAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDN------EGHSVVHW---- 138
+ +G T LH+A I NV L+ LLA A+V+++ H+++++
Sbjct: 65 FEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHP 124
Query: 139 ---ATVCGEVEALETVLSAGAEPSTPDIHGGYPIH 170
A G E + ++ GA+ D G +H
Sbjct: 125 LSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLH 159
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 47/117 (40%), Gaps = 22/117 (18%)
Query: 21 FDKKVHNTMEGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSC 80
F+ EG T+L A V+A+LA + R +V HY N I
Sbjct: 65 FEPMTSELYEGQTALHIAVINQNVNLVRALLARGASV---SARATGSVFHYRPHNLIYY- 120
Query: 81 AETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVH 137
G PL AA G+ ++ L+ H A++ +QD+ G++V+H
Sbjct: 121 ------------------GEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLH 159
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 46/112 (41%), Gaps = 11/112 (9%)
Query: 21 FDKKVHNTME-GATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYC--AENTI 77
F + HN + G L +AA G + E+ +L +R +D TVLH N
Sbjct: 110 FHYRPHNLIYYGEHPLSFAACVGSE-EIVRLLIEHGADIRAQDSLGNTVLHILILQPNKT 168
Query: 78 LSCAETILEVAPD-------LIEAADEDGYTPLHLAAIAGNVPLIHTLLAHR 122
+C L ++ D L + G TP LA + GN+ + L+ R
Sbjct: 169 FACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKR 220
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 71/162 (43%), Gaps = 3/162 (1%)
Query: 13 NLVWENGSFDKKVHNTMEGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYC 72
+ +++ S + T G T+L AA+ + K +L + +A +D +T LH
Sbjct: 9 DFIYQGASLHNQTDRT--GETALHLAARYSRSDAAKRLLEASADA-NIQDNMGRTPLHAA 65
Query: 73 AENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEG 132
+ ++ ++A DG TPL LAA ++ L+ A+VN+ D+ G
Sbjct: 66 VSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLG 125
Query: 133 HSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQ 174
S +HWA V+A +L GA + P+ A++
Sbjct: 126 KSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAR 167
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 53/104 (50%), Gaps = 2/104 (1%)
Query: 210 GRQPILWAASAGSSDAILALVKAGA-NVEAHDKDGLTALHCAASRGHRECLETLITLCGA 268
GR P+ A SA + L++ A +++A DG T L AA LE LI A
Sbjct: 58 GRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLIN-SHA 116
Query: 269 DVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
DV+ +D G SAL +A + + DA +LL+ GA + Q+ + T
Sbjct: 117 DVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREET 160
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 33/79 (41%)
Query: 210 GRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGAD 269
G + AA SDA L++A A+ D G T LH A S + + LI D
Sbjct: 25 GETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATD 84
Query: 270 VDVIDTNGCSALFYAVTLG 288
+D +G + L A L
Sbjct: 85 LDARMHDGTTPLILAARLA 103
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 78/208 (37%), Gaps = 18/208 (8%)
Query: 96 DEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAG 155
D G T LHLAA LL A+ N QDN G + +H A + ++
Sbjct: 22 DRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNR 81
Query: 156 AEPSTPDIHGGY-PIHYASQMC--GHASEMGNDVRVGLAXXXXXXXXXXXXXXXXXXGRQ 212
A +H G P+ A+++ G ++ N G+
Sbjct: 82 ATDLDARMHDGTTPLILAARLAVEGMLEDLIN--------------SHADVNAVDDLGKS 127
Query: 213 PILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDV 272
+ WAA+ + DA + L+K GAN + + T L AA G E + L+ A+ D+
Sbjct: 128 ALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHF-ANRDI 186
Query: 273 IDTNGCSALFYAVTLGHADATTLLLQYG 300
D A H D LL +Y
Sbjct: 187 TDHMDRLPRDIAQERMHHDIVRLLDEYN 214
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 19/39 (48%)
Query: 274 DTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
D G +AL A +DA LL+ A N QD GRT
Sbjct: 22 DRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRT 60
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 59/130 (45%), Gaps = 14/130 (10%)
Query: 50 ILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPD------------LIEAADE 97
+L RP+ R+ T T C +T + A + P+ +EA +
Sbjct: 97 LLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENY 156
Query: 98 DGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNE-GHSVVHWATVCGEVEALETVLSAGA 156
DG+TPLH+A I + ++ L A++N + G + +H A LE +L AGA
Sbjct: 157 DGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGA 216
Query: 157 EPSTPDIHGG 166
+P T ++GG
Sbjct: 217 DP-TARMYGG 225
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Query: 97 EDGYTPLHLAAIAGNVPLIHTLLAHRAN---VNSQDNEGHSVVHWATVCGEVEALETVLS 153
EDG T LHLA I + P + LL A ++ Q++ G + +H A + GE +E + +
Sbjct: 7 EDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYA 66
Query: 154 AGA 156
AGA
Sbjct: 67 AGA 69
Score = 30.8 bits (68), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Query: 235 NVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVID-TNGCSALFYAVTLGHADAT 293
+EA + DG T LH A E + L+ GAD++ + T G + L AV A
Sbjct: 150 QLEAENYDGHTPLHVAVIHKDAEMVR-LLRDAGADLNKPEPTCGRTPLHLAVEAQAASVL 208
Query: 294 TLLLQYGATPNRQDRKGRT 312
LLL+ GA P + GRT
Sbjct: 209 ELLLKAGADPTARMYGGRT 227
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 21/41 (51%)
Query: 99 GYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWA 139
G T LHLAAI G + L A A V + GH+ +H A
Sbjct: 45 GQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLA 85
Score = 27.7 bits (60), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
Query: 241 KDGLTALHCAASRGHRECLETLITLCGAD--VDVIDTNGCSALFYAVTLGHADATTLLLQ 298
+DG TALH A H L+ L+ +D+ + G +AL A LG A L
Sbjct: 7 EDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYA 66
Query: 299 YGATPNRQDRKGRT 312
GA +R G T
Sbjct: 67 AGAGVLVAERGGHT 80
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 59/130 (45%), Gaps = 14/130 (10%)
Query: 50 ILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPD------------LIEAADE 97
+L RP+ R+ T T C +T + A + P+ +EA +
Sbjct: 97 LLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENY 156
Query: 98 DGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNE-GHSVVHWATVCGEVEALETVLSAGA 156
DG+TPLH+A I + ++ L A++N + G + +H A LE +L AGA
Sbjct: 157 DGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGA 216
Query: 157 EPSTPDIHGG 166
+P T ++GG
Sbjct: 217 DP-TARMYGG 225
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Query: 97 EDGYTPLHLAAIAGNVPLIHTLLAHRAN---VNSQDNEGHSVVHWATVCGEVEALETVLS 153
EDG T LHLA I + P + LL A ++ Q++ G + +H A + GE +E + +
Sbjct: 7 EDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYA 66
Query: 154 AGA 156
AGA
Sbjct: 67 AGA 69
Score = 30.8 bits (68), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Query: 235 NVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVID-TNGCSALFYAVTLGHADAT 293
+EA + DG T LH A E + L+ GAD++ + T G + L AV A
Sbjct: 150 QLEAENYDGHTPLHVAVIHKDAEMVR-LLRDAGADLNKPEPTCGRTPLHLAVEAQAASVL 208
Query: 294 TLLLQYGATPNRQDRKGRT 312
LLL+ GA P + GRT
Sbjct: 209 ELLLKAGADPTARMYGGRT 227
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 21/41 (51%)
Query: 99 GYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWA 139
G T LHLAAI G + L A A V + GH+ +H A
Sbjct: 45 GQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLA 85
Score = 27.7 bits (60), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
Query: 241 KDGLTALHCAASRGHRECLETLITLCGAD--VDVIDTNGCSALFYAVTLGHADATTLLLQ 298
+DG TALH A H L+ L+ +D+ + G +AL A LG A L
Sbjct: 7 EDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYA 66
Query: 299 YGATPNRQDRKGRT 312
GA +R G T
Sbjct: 67 AGAGVLVAERGGHT 80
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 49/93 (52%), Gaps = 2/93 (2%)
Query: 213 PILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDV 272
P+ A +GS D + L++ GA+V+ + D + +H AA RGH EC+ +LI G ++D
Sbjct: 72 PLFNACVSGSWDCVNLLLQHGASVQP-ESDLASPIHEAARRGHVECVNSLIAY-GGNIDH 129
Query: 273 IDTNGCSALFYAVTLGHADATTLLLQYGATPNR 305
++ + L+ A LL+ GA N+
Sbjct: 130 KISHLGTPLYLACENQQRACVKKLLESGADVNQ 162
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 213 PILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDV 272
P+ AA G ++ L+ G V D ++ LH A GH C++ L+ GA V+
Sbjct: 6 PMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKH-GAQVNG 64
Query: 273 IDTNGCSALFYAVTLGHADATTLLLQYGAT 302
+ + + LF A G D LLLQ+GA+
Sbjct: 65 VTADWHTPLFNACVSGSWDCVNLLLQHGAS 94
Score = 36.2 bits (82), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 98 DGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAE 157
D +PLH A + G++ + LL H A VN + H+ + A V G + + +L GA
Sbjct: 35 DHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGAS 94
Query: 158 PSTPDIHGGYPIHYASQ 174
P+ PIH A++
Sbjct: 95 -VQPESDLASPIHEAAR 110
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 48/97 (49%), Gaps = 2/97 (2%)
Query: 78 LSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVH 137
LSC + +L+ + D +TPL A ++G+ ++ LL H A+V + + S +H
Sbjct: 49 LSCVKILLKHGAQ-VNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLA-SPIH 106
Query: 138 WATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQ 174
A G VE + ++++ G H G P++ A +
Sbjct: 107 EAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACE 143
Score = 32.0 bits (71), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 245 TALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPN 304
+ +H AA GH+ L LI+ G V++I + S L A GH +LL++GA N
Sbjct: 5 SPMHEAAIHGHQLSLRNLISQ-GWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVN 63
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 58/124 (46%), Gaps = 6/124 (4%)
Query: 13 NLVWENGSFDKKVHNTMEGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYC 72
NL+ ++G+ V + A+ + AA++G V +++A N + + T L+
Sbjct: 86 NLLLQHGA---SVQPESDLASPIHEAARRGHVECVNSLIAYGGN-IDHKISHLGTPLYLA 141
Query: 73 AENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEG 132
EN +C + +LE D+ + +D +PLH A + L L+ A+ +++ EG
Sbjct: 142 CENQQRACVKKLLESGADVNQGKGQD--SPLHAVARTASEELACLLMDFGADTQAKNAEG 199
Query: 133 HSVV 136
V
Sbjct: 200 KRPV 203
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 36/61 (59%)
Query: 96 DEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAG 155
+++G T LH A AG+ ++ L+ NVN+ D++G + +H A C V+ + ++ +G
Sbjct: 67 NDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESG 126
Query: 156 A 156
A
Sbjct: 127 A 127
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 28/47 (59%)
Query: 217 AASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLI 263
A AG ++ + LV+ G NV A D DG T LHCAAS + + + L+
Sbjct: 77 AVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLV 123
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 221 GSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSA 280
G D + ++ + + +G+TALH A GH E ++ L+ G +V+ D++G +
Sbjct: 48 GEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQF-GVNVNAADSDGWTP 106
Query: 281 LFYAVTLGHADATTLLLQYGA 301
L A + + L++ GA
Sbjct: 107 LHCAASCNNVQVCKFLVESGA 127
Score = 31.6 bits (70), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 20/34 (58%)
Query: 92 IEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANV 125
+ AAD DG+TPLH AA NV + L+ A V
Sbjct: 96 VNAADSDGWTPLHCAASCNNVQVCKFLVESGAAV 129
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 42/92 (45%), Gaps = 8/92 (8%)
Query: 100 YTPLHL---AAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGA 156
+ PL L +++ G L+ ++ + + ++EG + +H A G E ++ ++ G
Sbjct: 35 FNPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGV 94
Query: 157 EPSTPDIHGGYPIHYAS-----QMCGHASEMG 183
+ D G P+H A+ Q+C E G
Sbjct: 95 NVNAADSDGWTPLHCAASCNNVQVCKFLVESG 126
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 21/44 (47%)
Query: 269 DVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
D + + G +AL AV GH + L+Q+G N D G T
Sbjct: 62 DPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWT 105
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 36/61 (59%)
Query: 96 DEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAG 155
+++G T LH A AG+ ++ L+ NVN+ D++G + +H A C V+ + ++ +G
Sbjct: 67 NDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESG 126
Query: 156 A 156
A
Sbjct: 127 A 127
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 28/47 (59%)
Query: 217 AASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLI 263
A AG ++ + LV+ G NV A D DG T LHCAAS + + + L+
Sbjct: 77 AVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLV 123
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 214 ILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVI 273
+L ++ G D + ++ + + +G+TALH A GH E ++ L+ G +V+
Sbjct: 41 LLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQF-GVNVNAA 99
Query: 274 DTNGCSALFYAVTLGHADATTLLLQYGA 301
D++G + L A + + L++ GA
Sbjct: 100 DSDGWTPLHCAASCNNVQVCKFLVESGA 127
Score = 31.6 bits (70), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 20/34 (58%)
Query: 92 IEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANV 125
+ AAD DG+TPLH AA NV + L+ A V
Sbjct: 96 VNAADSDGWTPLHCAASCNNVQVCKFLVESGAAV 129
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 42/94 (44%), Gaps = 10/94 (10%)
Query: 100 YTPLHLA-----AIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSA 154
+ PL LA ++ G L+ ++ + + ++EG + +H A G E ++ ++
Sbjct: 33 FNPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQF 92
Query: 155 GAEPSTPDIHGGYPIHYAS-----QMCGHASEMG 183
G + D G P+H A+ Q+C E G
Sbjct: 93 GVNVNAADSDGWTPLHCAASCNNVQVCKFLVESG 126
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 21/44 (47%)
Query: 269 DVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
D + + G +AL AV GH + L+Q+G N D G T
Sbjct: 62 DPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWT 105
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/228 (22%), Positives = 84/228 (36%), Gaps = 17/228 (7%)
Query: 95 ADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSA 154
+D++ +H+AA G + L+ + Q+ G + +H A G V+ + + S
Sbjct: 16 SDDENXEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASV 75
Query: 155 GAEPSTPDIHGGYPIHYASQ---------MCGHASEMGNDVRVGLAXXXXXXXXXXXXXX 205
G S HG PIH A + A E G L
Sbjct: 76 GEVHSL--WHGQKPIHLAVXANKTDLVVALVEGAKERGQXPESLLNECDEREVNEIGSHV 133
Query: 206 XXXXGRQPILWAASAGSS--DAILALVKAGANVEAHDKDGLTALHCAASRGHRECL---- 259
G+ + W G + I LV+ GA+ A DK T L A +RE L
Sbjct: 134 KHCKGQTALHWCVGLGPEYLEXIKILVQLGASPTAKDKADETPLXRAXEFRNREALDLXX 193
Query: 260 ETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQD 307
+T+ + +D + G S L +A+ + D ++ G N +D
Sbjct: 194 DTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAXRFVEXGIDVNXED 241
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 49/93 (52%), Gaps = 2/93 (2%)
Query: 213 PILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDV 272
P+ A +GS D + L++ GA+V+ + D + +H AA RGH EC+ +LI G ++D
Sbjct: 128 PLFNACVSGSWDCVNLLLQHGASVQP-ESDLASPIHEAARRGHVECVNSLIAY-GGNIDH 185
Query: 273 IDTNGCSALFYAVTLGHADATTLLLQYGATPNR 305
++ + L+ A LL+ GA N+
Sbjct: 186 KISHLGTPLYLACENQQRACVKKLLESGADVNQ 218
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 213 PILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDV 272
P+ AA G ++ L+ G V D ++ LH A GH C++ L+ GA V+
Sbjct: 62 PMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKH-GAQVNG 120
Query: 273 IDTNGCSALFYAVTLGHADATTLLLQYGAT 302
+ + + LF A G D LLLQ+GA+
Sbjct: 121 VTADWHTPLFNACVSGSWDCVNLLLQHGAS 150
Score = 35.4 bits (80), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 98 DGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAE 157
D +PLH A + G++ + LL H A VN + H+ + A V G + + +L GA
Sbjct: 91 DHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGAS 150
Query: 158 PSTPDIHGGYPIHYASQ 174
P+ PIH A++
Sbjct: 151 -VQPESDLASPIHEAAR 166
Score = 34.7 bits (78), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 51/108 (47%), Gaps = 2/108 (1%)
Query: 67 TVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVN 126
+ LH LSC + +L+ + D +TPL A ++G+ ++ LL H A+V
Sbjct: 94 SPLHEACLGGHLSCVKILLKHGAQ-VNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ 152
Query: 127 SQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQ 174
+ + S +H A G VE + ++++ G H G P++ A +
Sbjct: 153 PESDLA-SPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACE 199
Score = 32.0 bits (71), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 245 TALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPN 304
+ +H AA GH+ L LI+ G V++I + S L A GH +LL++GA N
Sbjct: 61 SPMHEAAIHGHQLSLRNLISQ-GWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVN 119
Score = 28.1 bits (61), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 57/124 (45%), Gaps = 6/124 (4%)
Query: 13 NLVWENGSFDKKVHNTMEGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYC 72
NL+ ++G+ V + A+ + AA++G V +++A N + + T L+
Sbjct: 142 NLLLQHGA---SVQPESDLASPIHEAARRGHVECVNSLIAYGGN-IDHKISHLGTPLYLA 197
Query: 73 AENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEG 132
EN +C + +LE D+ + +D +PLH + L L+ A+ +++ EG
Sbjct: 198 CENQQRACVKKLLESGADVNQGKGQD--SPLHAVVRTASEELACLLMDFGADTQAKNAEG 255
Query: 133 HSVV 136
V
Sbjct: 256 KRPV 259
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 43/89 (48%)
Query: 213 PILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDV 272
P+ AA G+ + + V DK G TAL+ A GH++ +E L T +++
Sbjct: 76 PLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIELNQ 135
Query: 273 IDTNGCSALFYAVTLGHADATTLLLQYGA 301
+ G +AL A G+AD LLL GA
Sbjct: 136 QNKLGDTALHAAAWKGYADIVQLLLAKGA 164
Score = 35.8 bits (81), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 27/53 (50%)
Query: 101 TPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLS 153
PLH AA GN+ + L +R VN D G + ++WA G + +E + +
Sbjct: 75 NPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEXLFT 127
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 213 PILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDV 272
P++ A +A S A L++ GANV D G LH A GH L L GAD+
Sbjct: 238 PLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGH-TGLACLFLKRGADLGA 296
Query: 273 IDTNGCSALFYAVTLGHADATTLL 296
D+ G L A+ +AD TLL
Sbjct: 297 RDSEGRDPLTIAMETANADIVTLL 320
Score = 34.7 bits (78), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 35/78 (44%)
Query: 97 EDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGA 156
+D TPL A A ++ LL + ANVN D+ G +H AT+ G L GA
Sbjct: 233 QDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGA 292
Query: 157 EPSTPDIHGGYPIHYASQ 174
+ D G P+ A +
Sbjct: 293 DLGARDSEGRDPLTIAME 310
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 68 VLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNS 127
++ A N++L+C E +L+ + + AD G PLH A I G+ L L A++ +
Sbjct: 239 LIQATAANSLLAC-EFLLQNGAN-VNQADSAGRGPLHHATILGHTGLACLFLKRGADLGA 296
Query: 128 QDNEG 132
+D+EG
Sbjct: 297 RDSEG 301
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 24/45 (53%)
Query: 267 GADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGR 311
GA+V+ D+ G L +A LGH L L+ GA +D +GR
Sbjct: 258 GANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGR 302
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 213 PILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDV 272
P++ A +A S A L++ GANV D G LH A GH L L GAD+
Sbjct: 238 PLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGH-TGLACLFLKRGADLGA 296
Query: 273 IDTNGCSALFYAVTLGHADATTLL 296
D+ G L A+ +AD TLL
Sbjct: 297 RDSEGRDPLTIAMETANADIVTLL 320
Score = 34.3 bits (77), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 35/78 (44%)
Query: 97 EDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGA 156
+D TPL A A ++ LL + ANVN D+ G +H AT+ G L GA
Sbjct: 233 QDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGA 292
Query: 157 EPSTPDIHGGYPIHYASQ 174
+ D G P+ A +
Sbjct: 293 DLGARDSEGRDPLTIAME 310
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 68 VLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNS 127
++ A N++L+C E +L+ + + AD G PLH A I G+ L L A++ +
Sbjct: 239 LIQATAANSLLAC-EFLLQNGAN-VNQADSAGRGPLHHATILGHTGLACLFLKRGADLGA 296
Query: 128 QDNEG 132
+D+EG
Sbjct: 297 RDSEG 301
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 24/45 (53%)
Query: 267 GADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGR 311
GA+V+ D+ G L +A LGH L L+ GA +D +GR
Sbjct: 258 GANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGR 302
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 213 PILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDV 272
P++ A +A S A L++ GANV D G LH A GH L L GAD+
Sbjct: 238 PLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGH-TGLACLFLKRGADLGA 296
Query: 273 IDTNGCSALFYAVTLGHADATTLL 296
D+ G L A+ +AD TLL
Sbjct: 297 RDSEGRDPLTIAMETANADIVTLL 320
Score = 34.3 bits (77), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 35/78 (44%)
Query: 97 EDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGA 156
+D TPL A A ++ LL + ANVN D+ G +H AT+ G L GA
Sbjct: 233 QDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGA 292
Query: 157 EPSTPDIHGGYPIHYASQ 174
+ D G P+ A +
Sbjct: 293 DLGARDSEGRDPLTIAME 310
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 68 VLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNS 127
++ A N++L+C E +L+ + + AD G PLH A I G+ L L A++ +
Sbjct: 239 LIQATAANSLLAC-EFLLQNGAN-VNQADSAGRGPLHHATILGHTGLACLFLKRGADLGA 296
Query: 128 QDNEG 132
+D+EG
Sbjct: 297 RDSEG 301
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 24/45 (53%)
Query: 267 GADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGR 311
GA+V+ D+ G L +A LGH L L+ GA +D +GR
Sbjct: 258 GANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGR 302
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 2/98 (2%)
Query: 216 WAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDT 275
W A+ + + L+ + +V+A D++G TAL A G +C+ L+ GAD+D D
Sbjct: 49 WTAARKADEQALSQLLEDRDVDAVDENGRTALLFVAGLGSDKCVR-LLAEAGADLDHRDM 107
Query: 276 N-GCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
G +AL A + L++ GA +D +G T
Sbjct: 108 RGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLT 145
Score = 32.0 bits (71), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 31 GATSLMYAAQQGKDAEVKAILASRPNAVRERD-RTRKTVLHYCAENTILSCAETILEVAP 89
G T+L++ A G D V+ +LA + RD R T LH A E ++E+
Sbjct: 76 GRTALLFVAGLGSDKCVR-LLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGA 134
Query: 90 DLIEAADEDGYTPLHLA 106
D IE DE G T L LA
Sbjct: 135 D-IEVEDERGLTALELA 150
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 5/45 (11%)
Query: 217 AASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLET 261
AA + + ALV+ GA++E D+ GLTAL A RE L+T
Sbjct: 117 AAGYVRPEVVEALVELGADIEVEDERGLTALELA-----REILKT 156
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 2/98 (2%)
Query: 216 WAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDT 275
W A+ + + L+ + +V+A D++G TAL A G +C+ L+ GAD+D D
Sbjct: 50 WTAARKADEQALSQLLEDRDVDAVDENGRTALLFVAGLGSDKCV-RLLAEAGADLDHRDM 108
Query: 276 N-GCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
G +AL A + L++ GA +D +G T
Sbjct: 109 RGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLT 146
Score = 31.6 bits (70), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 31 GATSLMYAAQQGKDAEVKAILASRPNAVRERD-RTRKTVLHYCAENTILSCAETILEVAP 89
G T+L++ A G D V+ +LA + RD R T LH A E ++E+
Sbjct: 77 GRTALLFVAGLGSDKCVR-LLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGA 135
Query: 90 DLIEAADEDGYTPLHLA 106
D IE DE G T L LA
Sbjct: 136 D-IEVEDERGLTALELA 151
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 5/45 (11%)
Query: 217 AASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLET 261
AA + + ALV+ GA++E D+ GLTAL A RE L+T
Sbjct: 118 AAGYVRPEVVEALVELGADIEVEDERGLTALELA-----REILKT 157
>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
pdb|1YMP|B Chain B, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
Length = 135
Score = 35.8 bits (81), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 41/83 (49%)
Query: 92 IEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETV 151
++A DG TPL LAA ++ L+ A+VN+ D+ G S +HWA V+A +
Sbjct: 8 LDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVL 67
Query: 152 LSAGAEPSTPDIHGGYPIHYASQ 174
L GA + P+ A++
Sbjct: 68 LKNGANKDMQNNKEETPLFLAAR 90
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 229 LVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLG 288
L +++A DG T L AA LE LI ADV+ +D G SAL +A +
Sbjct: 1 LRNRATDLDARMHDGTTPLILAARLALEGMLEDLIN-SHADVNAVDDLGKSALHWAAAVN 59
Query: 289 HADATTLLLQYGATPNRQDRKGRT 312
+ DA +LL+ GA + Q+ K T
Sbjct: 60 NVDAAVVLLKNGANKDMQNNKEET 83
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 1/102 (0%)
Query: 210 GRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGAD 269
G P++ AA + L+ + A+V A D G +ALH AA+ + + L+ GA+
Sbjct: 15 GTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLK-NGAN 73
Query: 270 VDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGR 311
D+ + + LF A G + +LL + A + D R
Sbjct: 74 KDMQNNKEETPLFLAAREGSYETAKVLLDHFANRDITDHMDR 115
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 35.8 bits (81), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 118 LLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCG 177
LL A+ N QD G S VH A G ++ L+ ++ GA+ + D G PIH A + G
Sbjct: 60 LLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIR-EG 118
Query: 178 HAS 180
H+S
Sbjct: 119 HSS 121
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 40/94 (42%), Gaps = 2/94 (2%)
Query: 210 GRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGAD 269
G P+ AA G D + LV+ GA+V A D G +H A GH + L +D
Sbjct: 74 GTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFLAP--ESD 131
Query: 270 VDVIDTNGCSALFYAVTLGHADATTLLLQYGATP 303
+ D +G + L A G + +L + P
Sbjct: 132 LHHRDASGLTPLELARQRGAQNLMDILQGHMMIP 165
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 35.8 bits (81), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%)
Query: 96 DEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAG 155
+E+G T LH A N ++ L+ ANVNS D+ G + +H A C + ++ G
Sbjct: 51 NEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHG 110
Query: 156 A 156
A
Sbjct: 111 A 111
Score = 34.7 bits (78), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 36/68 (52%)
Query: 106 AAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHG 165
AA+ G + ++ + + + + EG + +H A ++ +++AGA ++PD HG
Sbjct: 28 AALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHG 87
Query: 166 GYPIHYAS 173
P+H A+
Sbjct: 88 WTPLHCAA 95
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 23/37 (62%), Gaps = 5/37 (13%)
Query: 229 LVKAGANVEAHDKDGLTALHCAASRGHRECLETLITL 265
L+ AGANV + D G T LHCAAS C +T+I +
Sbjct: 73 LITAGANVNSPDSHGWTPLHCAAS-----CNDTVICM 104
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 214 ILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVI 273
+L AA G + + VK + +++G+TALH A + ++ LIT GA+V+
Sbjct: 25 LLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLIT-AGANVNSP 83
Query: 274 DTNGCSALFYAVTLGHADATTLLLQYGA 301
D++G + L A + L+Q+GA
Sbjct: 84 DSHGWTPLHCAASCNDTVICMALVQHGA 111
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 35.8 bits (81), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 118 LLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCG 177
LL A+ N QD G S VH A G ++ L+ ++ GA+ + D G PIH A + G
Sbjct: 62 LLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIR-EG 120
Query: 178 HAS 180
H+S
Sbjct: 121 HSS 123
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 40/94 (42%), Gaps = 2/94 (2%)
Query: 210 GRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGAD 269
G P+ AA G D + LV+ GA+V A D G +H A GH + L +D
Sbjct: 76 GTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFLAP--ESD 133
Query: 270 VDVIDTNGCSALFYAVTLGHADATTLLLQYGATP 303
+ D +G + L A G + +L + P
Sbjct: 134 LHHRDASGLTPLELARQRGAQNLMDILQGHMMIP 167
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 36/74 (48%)
Query: 66 KTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANV 125
+T LHY A+ + + ++ + DEDG TP+ LAA G + ++ L+ A+V
Sbjct: 280 RTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGASV 339
Query: 126 NSQDNEGHSVVHWA 139
+ D H+ A
Sbjct: 340 EAVDATDHTARQLA 353
Score = 34.3 bits (77), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 8/82 (9%)
Query: 229 LVKAGANVE---AHDKD-----GLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSA 280
LV+ GA V+ A KD G TALH AA + ++ L+ G++ D D +G +
Sbjct: 257 LVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTP 316
Query: 281 LFYAVTLGHADATTLLLQYGAT 302
+ A G + L+Q GA+
Sbjct: 317 IXLAAQEGRIEVVXYLIQQGAS 338
Score = 31.6 bits (70), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 26/53 (49%)
Query: 210 GRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETL 262
G+ PI AA G + + L++ GA+VEA D TA A + H ++
Sbjct: 313 GKTPIXLAAQEGRIEVVXYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIF 365
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 213 PILWAASAGSSDAILALVKAGANVEAHDKDGLTALH-CAASRGHRECLETL-ITLCGADV 270
P+ A A + L KAGA+ ++K +ALH AA+R + L T D+
Sbjct: 169 PLXLAVLARRRRLVAYLXKAGADPTIYNKSERSALHQAAANRDFGXXVYXLNSTKLKGDI 228
Query: 271 DVIDTNGCSAL 281
+ +D NG +AL
Sbjct: 229 EELDRNGXTAL 239
>pdb|1BI7|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structure Of The Cdk6-P16ink4a Tumor Suppressor
Complex
Length = 156
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 47/129 (36%), Gaps = 12/129 (9%)
Query: 139 ATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAXXXXXXX 198
A G VE + +L AGA P+ P+ +G PI +E+
Sbjct: 19 AAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAEL------------LLLH 66
Query: 199 XXXXXXXXXXXGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHREC 258
+P+ AA G D ++ L +AGA ++ D G + A GHR+
Sbjct: 67 GAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDV 126
Query: 259 LETLITLCG 267
L G
Sbjct: 127 ARYLRAAAG 135
>pdb|1DC2|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 20
Structures
pdb|1A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 18
Structures
pdb|2A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a,
Restrained Minimized Mean Structure
Length = 156
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 47/129 (36%), Gaps = 12/129 (9%)
Query: 139 ATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAXXXXXXX 198
A G VE + +L AGA P+ P+ +G PI +E+
Sbjct: 19 AAARGRVEEVRALLEAGALPNAPNSYGRRPIQVMMMGSARVAEL------------LLLH 66
Query: 199 XXXXXXXXXXXGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHREC 258
+P+ AA G D ++ L +AGA ++ D G + A GHR+
Sbjct: 67 GAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDV 126
Query: 259 LETLITLCG 267
L G
Sbjct: 127 ARYLRAAAG 135
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 40/90 (44%), Gaps = 7/90 (7%)
Query: 210 GRQPILWAASAGSSDAILALVKAGANVEAHDKDGLT-ALHCAASRGHRECLETLITL--C 266
GR+PI GS+ L+ GA D LT +H AA G L+TL+ L
Sbjct: 45 GRRPI-QVMMMGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGF---LDTLVVLHRA 100
Query: 267 GADVDVIDTNGCSALFYAVTLGHADATTLL 296
GA +DV D G + A LGH D L
Sbjct: 101 GARLDVRDAWGRLPVDLAEELGHRDVARYL 130
>pdb|3S6D|A Chain A, Crystal Structure Of A Putative Triosephosphate Isomerase
From Coccidioides Immitis
Length = 310
Score = 31.2 bits (69), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 29/61 (47%)
Query: 47 VKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLA 106
++ +L R + +R+ +R+R + TI C+E I E +L D D PL L
Sbjct: 56 IQGLLEPRNDIIRQENRSRLLLALIPDFLTIYPCSEAIKEFESNLAAPQDADTPPPLLLG 115
Query: 107 A 107
A
Sbjct: 116 A 116
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin
Repeats Of Papbeta
Length = 278
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 4/90 (4%)
Query: 229 LVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLG 288
LV+ N++ G TALH + ECL+ L+ A +++ + +G + L A L
Sbjct: 191 LVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLR-GKASIEIANESGETPLDIAKRLK 249
Query: 289 HADATTLLLQYGATPNRQDRKGRTYEYQWR 318
H LL Q A R + EY+WR
Sbjct: 250 HEHCEELLTQ--ALSGRFNSHVHV-EYEWR 276
>pdb|1SW6|A Chain A, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
pdb|1SW6|B Chain B, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
Length = 327
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 54/138 (39%), Gaps = 6/138 (4%)
Query: 3 DVISIFLSKPNLVWENGSFDKKVHNTMEGATSLMYAAQQGKDAEVKAILASRPNAVRERD 62
D+ S FLS P + + + V N E L Q+ E++ + S N R+
Sbjct: 33 DLTSDFLSSPLKIMK--ALPSPVVNDNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRN 90
Query: 63 R----TRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTL 118
+ + H ++ + + +L DE G TPLH N+ L+ L
Sbjct: 91 SEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHL 150
Query: 119 LAHRANVNSQDNEGHSVV 136
+ H +N DN G S +
Sbjct: 151 VKHGSNRLYGDNMGESCL 168
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/49 (24%), Positives = 27/49 (55%)
Query: 125 VNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYAS 173
+N+QD+ G + ++ A G + ++ +L GA+P + G P+ + +
Sbjct: 276 LNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA 324
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 229 LVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLG 288
+++ G +++A DG TALH AA +CL+ L+ A V ++ G +AL A
Sbjct: 193 IIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLK-GRALVGTVNEAGETALDIARKKH 251
Query: 289 HADATTLLLQ 298
H + LL Q
Sbjct: 252 HKECEELLEQ 261
Score = 27.7 bits (60), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%)
Query: 210 GRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETL 262
G + +AA D + L+K A V ++ G TAL A + H+EC E L
Sbjct: 207 GNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELL 259
>pdb|2PIG|A Chain A, Crystal Structure Of Ydck From Salmonella Cholerae At 2.38
A Resolution. Northeast Structural Genomics Target Scr6
pdb|2PIG|B Chain B, Crystal Structure Of Ydck From Salmonella Cholerae At 2.38
A Resolution. Northeast Structural Genomics Target Scr6
Length = 334
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 12/86 (13%)
Query: 103 LHLAAIAGNVPLIHTLLAHRANVNS----QDNEGHSVVHWATVCGEVEALETVLSAGAEP 158
+H + GN + H + HRA V + ++ ++V W C +V V++ E
Sbjct: 166 VHQVQLYGNATITHAFIEHRAEVFDFALIEGDKDNNV--WICDCAKVYGHARVIAGTEED 223
Query: 159 STPDIHGGYPIHYASQMCGHASEMGN 184
+ P + Y+SQ+ HA GN
Sbjct: 224 AIP------TLRYSSQVAEHALIEGN 243
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 229 LVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLG 288
+++ G +++A DG TALH AA +CL+ L+ A V ++ G +AL A
Sbjct: 212 IIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLK-GRALVGTVNEAGETALDIARKKH 270
Query: 289 HADATTLLLQ 298
H + LL Q
Sbjct: 271 HKECEELLEQ 280
>pdb|2F9C|A Chain A, Crystal Structure Of Ydck From Salmonella Cholerae. Nesg
Target Scr6
pdb|2F9C|B Chain B, Crystal Structure Of Ydck From Salmonella Cholerae. Nesg
Target Scr6
Length = 334
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 12/86 (13%)
Query: 103 LHLAAIAGNVPLIHTLLAHRANVNS----QDNEGHSVVHWATVCGEVEALETVLSAGAEP 158
+H + GN + H + HRA V + ++ ++V W C +V V++ E
Sbjct: 166 VHQVQLYGNATITHAFIEHRAEVFDFALIEGDKDNNV--WICDCAKVYGHARVIAGTEED 223
Query: 159 STPDIHGGYPIHYASQMCGHASEMGN 184
+ P + Y+SQ+ HA GN
Sbjct: 224 AIP------TLRYSSQVAEHALIEGN 243
>pdb|1D9S|A Chain A, Tumor Suppressor P15(Ink4b) Structure By Comparative
Modeling And Nmr Data
Length = 136
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 47/124 (37%), Gaps = 12/124 (9%)
Query: 139 ATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAXXXXXXX 198
A G+VE + +L AGA+P+ + G PI +E+
Sbjct: 19 AAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMMGSAQVAEL------------LLLH 66
Query: 199 XXXXXXXXXXXGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHREC 258
+P+ AA G D ++ L +AGA ++ D G + A +GHR+
Sbjct: 67 GAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDI 126
Query: 259 LETL 262
L
Sbjct: 127 ARYL 130
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 247 LHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQ 306
L AA+RG E + L+ GAD + ++ G + + +G A LLL +GA PN
Sbjct: 16 LATAAARGQVETVRQLLE-AGADPNALNRFGRRPI-QVMMMGSAQVAELLLLHGAEPNCA 73
Query: 307 D 307
D
Sbjct: 74 D 74
>pdb|3KEA|A Chain A, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
pdb|3KEA|B Chain B, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
Length = 285
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Query: 95 ADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSA 154
AD G++ + A NV L+ TLL A N +NE +H A + + ++ +L +
Sbjct: 27 ADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLENEFP--LHQAATLEDTKIVKILLFS 84
Query: 155 GAEPSTPDIHGGYPIHYA 172
G + S D G ++YA
Sbjct: 85 GLDDSQFDDKGNTALYYA 102
>pdb|2NYJ|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
pdb|2PNN|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
Length = 273
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 53/122 (43%), Gaps = 20/122 (16%)
Query: 18 NGSFDKKVHNT---MEGATSLMYAAQQGKDAEVKAILAS--RPNAVRERDRTRKTVLH-- 70
NG F KK G L AA + A VK +L + +P + RD TVLH
Sbjct: 132 NGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHAL 191
Query: 71 -YCAENTI------LSCAETIL----EVAPDLI--EAADEDGYTPLHLAAIAGNVPLIHT 117
A+NT+ S IL ++ P L E + G TPL LAA +G + ++
Sbjct: 192 VEVADNTVDNTKFVTSXYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAY 251
Query: 118 LL 119
+L
Sbjct: 252 IL 253
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.131 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,009,514
Number of Sequences: 62578
Number of extensions: 333010
Number of successful extensions: 1825
Number of sequences better than 100.0: 118
Number of HSP's better than 100.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 734
Number of HSP's gapped (non-prelim): 645
length of query: 321
length of database: 14,973,337
effective HSP length: 99
effective length of query: 222
effective length of database: 8,778,115
effective search space: 1948741530
effective search space used: 1948741530
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)