RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy138
(321 letters)
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein;
2.70A {Homo sapiens} SCOP: d.211.1.1
Length = 437
Score = 206 bits (527), Expect = 1e-63
Identities = 75/283 (26%), Positives = 115/283 (40%), Gaps = 15/283 (5%)
Query: 30 EGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAP 89
+ T L AA+ G VK +L + N T LH A + +LE
Sbjct: 79 DDQTPLHCAARIGHTNMVKLLLENNAN-PNLATTAGHTPLHIAAREGHVETVLALLEKEA 137
Query: 90 DLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALE 149
+ G+TPLH+AA G V + LL A+ N+ G + +H A ++ ++
Sbjct: 138 S-QACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVK 196
Query: 150 TVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKD 209
+L G P +P +G P+H A++ + V + LL + N
Sbjct: 197 LLLPRGGSPHSPAWNGYTPLHIAAKQ-NQ-----------VEVARSLLQYGGSANAESVQ 244
Query: 210 GRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGAD 269
G P+ AA G ++ + L+ AN +K GLT LH A GH + LI G
Sbjct: 245 GVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIK-HGVM 303
Query: 270 VDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
VD G + L A G+ LLQ+ A N + + G +
Sbjct: 304 VDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYS 346
Score = 204 bits (521), Expect = 1e-62
Identities = 75/283 (26%), Positives = 117/283 (41%), Gaps = 15/283 (5%)
Query: 30 EGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAP 89
G T L A+ G VK +L + + +T LH A A+ +L+
Sbjct: 13 SGLTPLHVASFMGHLPIVKNLLQRGAS-PNVSNVKVETPLHMAARAGHTEVAKYLLQNKA 71
Query: 90 DLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALE 149
+ A +D TPLH AA G+ ++ LL + AN N GH+ +H A G VE +
Sbjct: 72 K-VNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVL 130
Query: 150 TVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKD 209
+L A + G P+H A++ G + V ++LL + N K+
Sbjct: 131 ALLEKEASQACMTKKGFTPLHVAAKY-GK-----------VRVAELLLERDAHPNAAGKN 178
Query: 210 GRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGAD 269
G P+ A + D + L+ G + + +G T LH AA + E +L+ G
Sbjct: 179 GLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQ-YGGS 237
Query: 270 VDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
+ G + L A GHA+ LLL A N ++ G T
Sbjct: 238 ANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLT 280
Score = 204 bits (521), Expect = 1e-62
Identities = 71/285 (24%), Positives = 124/285 (43%), Gaps = 15/285 (5%)
Query: 28 TMEGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEV 87
++ T L AA+ G K +L ++ V + + +T LH A + + +LE
Sbjct: 44 NVKVETPLHMAARAGHTEVAKYLLQNKAK-VNAKAKDDQTPLHCAARIGHTNMVKLLLEN 102
Query: 88 APDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEA 147
+ A G+TPLH+AA G+V + LL A+ +G + +H A G+V
Sbjct: 103 NAN-PNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRV 161
Query: 148 LETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVD 207
E +L A P+ +G P+H A + L ++K+LL +
Sbjct: 162 AELLLERDAHPNAAGKNGLTPLHVAVH-HNN-----------LDIVKLLLPRGGSPHSPA 209
Query: 208 KDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCG 267
+G P+ AA + +L++ G + A G+T LH AA GH E + L++
Sbjct: 210 WNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLS-KQ 268
Query: 268 ADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
A+ ++ + +G + L GH +L+++G + R G T
Sbjct: 269 ANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYT 313
Score = 200 bits (512), Expect = 2e-61
Identities = 72/287 (25%), Positives = 126/287 (43%), Gaps = 18/287 (6%)
Query: 30 EGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAP 89
+G T L AA+ GK + +L + + T LH + L + +L
Sbjct: 145 KGFTPLHVAAKYGKVRVAELLLERDAH-PNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGG 203
Query: 90 DLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALE 149
+ +GYTPLH+AA V + +LL + + N++ +G + +H A G E +
Sbjct: 204 S-PHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVA 262
Query: 150 TVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKD 209
+LS A + + G P+H +Q GH + V VL+ H V V+ +
Sbjct: 263 LLLSKQANGNLGNKSGLTPLHLVAQ-EGH-----------VPVADVLIKHGVMVDATTRM 310
Query: 210 GRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGAD 269
G P+ A+ G+ + L++ A+V A K G + LH AA +GH + + L+ GA
Sbjct: 311 GYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLK-NGAS 369
Query: 270 VDVIDTNGCSALFYAVTLGHADATTLLLQY---GATPNRQDRKGRTY 313
+ + ++G + L A LG+ T +L + D+ ++
Sbjct: 370 PNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSF 416
Score = 196 bits (501), Expect = 9e-60
Identities = 62/255 (24%), Positives = 104/255 (40%), Gaps = 14/255 (5%)
Query: 58 VRERDRTRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHT 117
+ T LH + L + +L+ ++ TPLH+AA AG+ +
Sbjct: 7 GGGGGESGLTPLHVASFMGHLPIVKNLLQRGAS-PNVSNVKVETPLHMAARAGHTEVAKY 65
Query: 118 LLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCG 177
LL ++A VN++ + + +H A G ++ +L A P+ G P+H A++ G
Sbjct: 66 LLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAR-EG 124
Query: 178 HASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVE 237
H + + LL + K G P+ AA G L++ A+
Sbjct: 125 H-----------VETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPN 173
Query: 238 AHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLL 297
A K+GLT LH A + + ++ L+ G NG + L A + LL
Sbjct: 174 AAGKNGLTPLHVAVHHNNLDIVKLLLPR-GGSPHSPAWNGYTPLHIAAKQNQVEVARSLL 232
Query: 298 QYGATPNRQDRKGRT 312
QYG + N + +G T
Sbjct: 233 QYGGSANAESVQGVT 247
Score = 154 bits (392), Expect = 7e-44
Identities = 51/192 (26%), Positives = 79/192 (41%), Gaps = 13/192 (6%)
Query: 121 HRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHAS 180
+ G + +H A+ G + ++ +L GA P+ ++ P+H A++ GH
Sbjct: 3 PGISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAAR-AGH-- 59
Query: 181 EMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHD 240
V K LL + VN KD + P+ AA G ++ + L++ AN
Sbjct: 60 ---------TEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLAT 110
Query: 241 KDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYG 300
G T LH AA GH E + L+ A + G + L A G LLL+
Sbjct: 111 TAGHTPLHIAAREGHVETVLALLE-KEASQACMTKKGFTPLHVAAKYGKVRVAELLLERD 169
Query: 301 ATPNRQDRKGRT 312
A PN + G T
Sbjct: 170 AHPNAAGKNGLT 181
Score = 141 bits (357), Expect = 1e-38
Identities = 50/224 (22%), Positives = 88/224 (39%), Gaps = 17/224 (7%)
Query: 30 EGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAP 89
G T L AA+Q + +++L + T LH A+ +L
Sbjct: 211 NGYTPLHIAAKQNQVEVARSLLQYGGS-ANAESVQGVTPLHLAAQEGHAEMVALLLSKQA 269
Query: 90 DLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALE 149
+ ++ G TPLHL A G+VP+ L+ H V++ G++ +H A+ G ++ ++
Sbjct: 270 N-GNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVK 328
Query: 150 TVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKD 209
+L A+ + G P+H A+Q GH ++ +LL + N V D
Sbjct: 329 FLLQHQADVNAKTKLGYSPLHQAAQ-QGH-----------TDIVTLLLKNGASPNEVSSD 376
Query: 210 GRQPILWAASAGSSDAI---LALVKAGANVEAHDKDGLTALHCA 250
G P+ A G + + V DK ++
Sbjct: 377 GTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSFPETV 420
Score = 136 bits (345), Expect = 4e-37
Identities = 49/160 (30%), Positives = 69/160 (43%), Gaps = 13/160 (8%)
Query: 153 SAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQ 212
S G G P+H AS M GH L ++K LL NV +
Sbjct: 2 SPGISGGGGGESGLTPLHVASFM-GH-----------LPIVKNLLQRGASPNVSNVKVET 49
Query: 213 PILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDV 272
P+ AA AG ++ L++ A V A KD T LHCAA GH ++ L+ A+ ++
Sbjct: 50 PLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLE-NNANPNL 108
Query: 273 IDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
T G + L A GH + LL+ A+ +KG T
Sbjct: 109 ATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFT 148
Score = 47.9 bits (115), Expect = 2e-06
Identities = 22/134 (16%), Positives = 34/134 (25%), Gaps = 47/134 (35%)
Query: 28 TMEGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEV 87
T G + L AAQQG V +L + +
Sbjct: 341 TKLGYSPLHQAAQQGHTDIVTLLLKNGAS------------------------------- 369
Query: 88 APDLIEAADEDGYTPLHLAAIAGNVPLIHTL---LAHRANVNSQDNEGHSVVHWATVCGE 144
DG TPL +A G + + L + V D S
Sbjct: 370 ----PNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSFPE------- 418
Query: 145 VEALETVLSAGAEP 158
++ +L +
Sbjct: 419 --TVDEILDVSEDE 430
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A;
1.80A {Homo sapiens} SCOP: d.211.1.1
Length = 285
Score = 184 bits (469), Expect = 1e-56
Identities = 75/293 (25%), Positives = 120/293 (40%), Gaps = 28/293 (9%)
Query: 30 EGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAP 89
E L+ A Q V+ +L N + + T LH + + E +L
Sbjct: 4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA 63
Query: 90 DLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALE 149
D ++G TP LAAIAG+V L+ L+ A+VN D G + A V G+V+AL+
Sbjct: 64 D-PVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALK 122
Query: 150 TVLSAGAEPSTPDIHGGY----------PIHYASQMCGHASEMGNDVRVGLAVLKVLL-H 198
+ GA + + A++ GH + VLK+LL
Sbjct: 123 FLYKRGANVNLRRKTKEDQERLRKGGATALMDAAE-KGH-----------VEVLKILLDE 170
Query: 199 HNVDVNVVDKDGRQPILWAASAGSSDAILALVK----AGANVEAHDKDGLTALHCAASRG 254
DVN D GR ++ A + + A+ GA+V + G T L A +
Sbjct: 171 MGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKK 230
Query: 255 HRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQD 307
H ++ L+ +++ D++G +AL AV L LL + GA+ + D
Sbjct: 231 HLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD 283
Score = 168 bits (428), Expect = 1e-50
Identities = 72/233 (30%), Positives = 100/233 (42%), Gaps = 27/233 (11%)
Query: 95 ADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNE-GHSVVHWATVCGEVEALETVLS 153
A + L A +V L+ LL ANVN Q+ E G + +H A + +E +L
Sbjct: 1 AAVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLR 60
Query: 154 AGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQP 213
GA+P +G P A+ G + +LK+ L DVN D G
Sbjct: 61 HGADPVLRKKNGATPFLLAAI-AGS-----------VKLLKLFLSKGADVNECDFYGFTA 108
Query: 214 ILWAASAGSSDAILALVKAGANVEAHDKD----------GLTALHCAASRGHRECLETLI 263
+ AA G A+ L K GANV K G TAL AA +GH E L+ L+
Sbjct: 109 FMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILL 168
Query: 264 TLCGADVDVIDTNGCSALFYAVTLGHADATT----LLLQYGATPNRQDRKGRT 312
GADV+ D G +AL +A+ LLL +GA N + +G+T
Sbjct: 169 DEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKT 221
Score = 165 bits (421), Expect = 1e-49
Identities = 67/262 (25%), Positives = 103/262 (39%), Gaps = 27/262 (10%)
Query: 66 KTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANV 125
+L +N + + +LE ++ +E G+TPLH A ++ LL H A+
Sbjct: 6 NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADP 65
Query: 126 NSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGND 185
+ G + A + G V+ L+ LS GA+ + D +G A+ G
Sbjct: 66 VLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAV-YGK------- 117
Query: 186 VRVGLAVLKVLLHHNVDVNVVDKD----------GRQPILWAASAGSSDAILALV-KAGA 234
+ LK L +VN+ K G ++ AA G + + L+ + GA
Sbjct: 118 ----VKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGA 173
Query: 235 NVEAHDKDGLTALHCAASRGHRECLETLITL---CGADVDVIDTNGCSALFYAVTLGHAD 291
+V A D G AL A +E + L GADV+V G + L AV H
Sbjct: 174 DVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLG 233
Query: 292 ATTLLL-QYGATPNRQDRKGRT 312
LL Q N D G+T
Sbjct: 234 LVQRLLEQEHIEINDTDSDGKT 255
Score = 116 bits (294), Expect = 5e-31
Identities = 35/154 (22%), Positives = 61/154 (39%), Gaps = 14/154 (9%)
Query: 162 DIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQ-PILWAASA 220
+ + + A Q + +++ LL +VN +++G P+ A
Sbjct: 2 AVEDNHLLIKAVQ-NED-----------VDLVQQLLEGGANVNFQEEEGGWTPLHNAVQM 49
Query: 221 GSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSA 280
D + L++ GA+ K+G T AA G + L+ ++ GADV+ D G +A
Sbjct: 50 SREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLS-KGADVNECDFYGFTA 108
Query: 281 LFYAVTLGHADATTLLLQYGATPNRQDRKGRTYE 314
A G A L + GA N + + E
Sbjct: 109 FMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQE 142
Score = 82.1 bits (204), Expect = 4e-18
Identities = 35/142 (24%), Positives = 57/142 (40%), Gaps = 12/142 (8%)
Query: 30 EGATSLMYAAQQGKDAEVKAILASRPNA-VRERDRTRKTVLHYCAENTILSCAETILEVA 88
GAT+LM AA++G +K IL A V D + L + + S + +
Sbjct: 147 GGATALMDAAEKGHVEVLK-ILLDEMGADVNACDNMGRNALIHALLS---SDDSDVEAIT 202
Query: 89 PDLIE------AADEDGYTPLHLAAIAGNVPLIHTLLAHR-ANVNSQDNEGHSVVHWATV 141
L++ E G TPL LA ++ L+ LL +N D++G + + A
Sbjct: 203 HLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVE 262
Query: 142 CGEVEALETVLSAGAEPSTPDI 163
+ E + GA D+
Sbjct: 263 LKLKKIAELLCKRGASTDCGDL 284
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats,
methyllyine binding, huntingti interacting protein 14,
acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo
sapiens}
Length = 240
Score = 174 bits (445), Expect = 1e-53
Identities = 55/224 (24%), Positives = 103/224 (45%), Gaps = 16/224 (7%)
Query: 92 IEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETV 151
+ D+ + A G L+ +V D E +++HWA + ++ ++
Sbjct: 2 MTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYY 61
Query: 152 LSAGAEPSTPDIHGGY-PIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDG 210
+S GA P+H+A++ GH L+++ L+ + D +++D +G
Sbjct: 62 ISKGAIVDQLGGDLNSTPLHWATR-QGH-----------LSMVVQLMKYGADPSLIDGEG 109
Query: 211 RQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHR-ECLETLITLCGAD 269
I AA G + + L+ G +V+ D++G+T L AA R H + L+T
Sbjct: 110 CSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLT-FNVS 168
Query: 270 VDVID-TNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
V++ D + +AL +AV G+ +LLL+ GA + Q+ KG +
Sbjct: 169 VNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGES 212
Score = 174 bits (443), Expect = 2e-53
Identities = 63/247 (25%), Positives = 105/247 (42%), Gaps = 17/247 (6%)
Query: 58 VRERDRTRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHT 117
+ D + + I ++E D + D++ T LH AAI + L+
Sbjct: 2 MTHIDDYSTWDIVKATQYGIYERCRELVEAGYD-VRQPDKENVTLLHWAAINNRIDLVKY 60
Query: 118 LLAHRANVNSQDNE-GHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMC 176
++ A V+ + + +HWAT G + + ++ GA+PS D G IH A+Q
Sbjct: 61 YISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQ-F 119
Query: 177 GHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAG-SSDAILALVKAGAN 235
GH +++ L+ DV+++D++G P++WAA S D L+ +
Sbjct: 120 GH-----------TSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVS 168
Query: 236 VEAHDK-DGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATT 294
V DK TALH A G+ + L+ GA+VD + G SAL A +
Sbjct: 169 VNLGDKYHKNTALHWAVLAGNTTVISLLLE-AGANVDAQNIKGESALDLAKQRKNVWMIN 227
Query: 295 LLLQYGA 301
L +
Sbjct: 228 HLQEARQ 234
Score = 154 bits (393), Expect = 6e-46
Identities = 58/235 (24%), Positives = 108/235 (45%), Gaps = 13/235 (5%)
Query: 30 EGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAP 89
++ A Q G + ++ + + VR+ D+ T+LH+ A N + + +
Sbjct: 8 YSTWDIVKATQYGIYERCRELVEAGYD-VRQPDKENVTLLHWAAINNRIDLVKYYISKGA 66
Query: 90 DLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALE 149
+ + + TPLH A G++ ++ L+ + A+ + D EG S +H A G +
Sbjct: 67 IVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVA 126
Query: 150 TVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDK- 208
+++ G + D +G P+ +A+ H+ + ++LL NV VN+ DK
Sbjct: 127 YLIAKGQDVDMMDQNGMTPLMWAAYR-THSVD----------PTRLLLTFNVSVNLGDKY 175
Query: 209 DGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLI 263
+ WA AG++ I L++AGANV+A + G +AL A R + + L
Sbjct: 176 HKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQ 230
Score = 136 bits (345), Expect = 8e-39
Identities = 49/192 (25%), Positives = 81/192 (42%), Gaps = 16/192 (8%)
Query: 124 NVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMG 183
++ D+ + AT G E ++ AG + PD +H+A+
Sbjct: 1 HMTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAIN-NR----- 54
Query: 184 NDVRVGLAVLKVLLHHNVDVNVVDKD-GRQPILWAASAGSSDAILALVKAGANVEAHDKD 242
+ ++K + V+ + D P+ WA G ++ L+K GA+ D +
Sbjct: 55 ------IDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGE 108
Query: 243 GLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGH-ADATTLLLQYGA 301
G + +H AA GH + LI G DVD++D NG + L +A H D T LLL +
Sbjct: 109 GCSCIHLAAQFGHTSIVAYLIA-KGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNV 167
Query: 302 TPNRQDRK-GRT 312
+ N D+ T
Sbjct: 168 SVNLGDKYHKNT 179
Score = 114 bits (288), Expect = 1e-30
Identities = 43/212 (20%), Positives = 79/212 (37%), Gaps = 17/212 (8%)
Query: 30 EGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTR-KTVLHYCAENTILSCAETILEVA 88
E T L +AA + VK ++ V + T LH+ LS +++
Sbjct: 41 ENVTLLHWAAINNRIDLVKYYISKGAI-VDQLGGDLNSTPLHWATRQGHLSMVVQLMKYG 99
Query: 89 PDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCG-EVEA 147
D D +G + +HLAA G+ ++ L+A +V+ D G + + WA V+
Sbjct: 100 AD-PSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDP 158
Query: 148 LETVLSAGAEPSTPDIHGGY-PIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVV 206
+L+ + D + +H+A G+ V+ +LL +V+
Sbjct: 159 TRLLLTFNVSVNLGDKYHKNTALHWAVL-AGN-----------TTVISLLLEAGANVDAQ 206
Query: 207 DKDGRQPILWAASAGSSDAILALVKAGANVEA 238
+ G + A + I L +A
Sbjct: 207 NIKGESALDLAKQRKNVWMINHLQEARQAKGY 238
Score = 64.0 bits (157), Expect = 4e-12
Identities = 25/103 (24%), Positives = 42/103 (40%), Gaps = 7/103 (6%)
Query: 31 GATSLMYAAQQGKDAEVKAILASR---PNAVRERDRTRKTVLHYCAENTILSCAETILEV 87
G T LM+AA + + +L + N + + T LH+ + +LE
Sbjct: 142 GMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHK--NTALHWAVLAGNTTVISLLLEA 199
Query: 88 APDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDN 130
+ ++A + G + L LA NV +I+ L R DN
Sbjct: 200 GAN-VDAQNIKGESALDLAKQRKNVWMINHLQEARQAKG-YDN 240
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix,
ankyrin repeat, gene regulation/signalling protein/DNA
complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Length = 373
Score = 178 bits (453), Expect = 2e-53
Identities = 55/324 (16%), Positives = 109/324 (33%), Gaps = 49/324 (15%)
Query: 17 ENGSFDKKVHNT-MEGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAEN 75
+G ++ + G D + + E + LH A
Sbjct: 46 YDGYIKRQRNELQHYSLYPNPQGYGNGND-FLGDFNHTNLQIPTEPEPESPIKLHTEAAG 104
Query: 76 TILSCAETILEVAPDLIE-----AADEDGYTPLHLAAIAGNVPLIHTLLAHR-------- 122
+ + + T LH A + L+ H
Sbjct: 105 S--------YAITEPITRESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAG 156
Query: 123 ANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEM 182
A+VN+ D + ++ + A + + ++ AGA+P+ + +H A+
Sbjct: 157 ADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAA-NRD---- 211
Query: 183 GNDVRVGLAVLKVLLHHN---VDVNVVDKDGRQPILWAASAGSSDAILA---LVKAGANV 236
++ +L+ D+ +D++G ++ A D + + LV+ GA V
Sbjct: 212 -------FGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKV 264
Query: 237 --------EAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLG 288
++ G TALH AA + ++ L+ G++ D D +G + + A G
Sbjct: 265 DYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEG 324
Query: 289 HADATTLLLQYGATPNRQDRKGRT 312
+ L+Q GA+ D T
Sbjct: 325 RIEVVMYLIQQGASVEAVDATDHT 348
Score = 160 bits (408), Expect = 8e-47
Identities = 64/291 (21%), Positives = 108/291 (37%), Gaps = 32/291 (10%)
Query: 30 EGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAET-ILEVA 88
E L A + I N + R +TVLH+ A N+ +E I+ A
Sbjct: 93 ESPIKLHTEAAGSYAI-TEPITRESVNIIDPRHN--RTVLHWIASNSSAEKSEDLIVHEA 149
Query: 89 PDL------IEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVC 142
+ + A D D TPL LA +A L+ L+ A+ + S +H A
Sbjct: 150 KECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAAN 209
Query: 143 GEVEALETVLS---AGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHH 199
+ + +L+ + D +G + + N+ R +A K+L+
Sbjct: 210 RDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAH---------NEGRDQVASAKLLVEK 260
Query: 200 NVDVNV--------VDKDGRQPILWAASAGSSDAILALV-KAGANVEAHDKDGLTALHCA 250
V+ GR + +AA + + LV + G+N + D+DG T + A
Sbjct: 261 GAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLA 320
Query: 251 ASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGA 301
A G E + LI GA V+ +D +A A H + + +
Sbjct: 321 AQEGRIEVVMYLIQQ-GASVEAVDATDHTARQLAQANNHHNIVDIFDRCRP 370
Score = 148 bits (377), Expect = 3e-42
Identities = 44/264 (16%), Positives = 92/264 (34%), Gaps = 36/264 (13%)
Query: 30 EGATSLMYAAQQGKDAEVKAILASRPNA-------VRERDRTRKTVLHYCAENTILSCAE 82
T L + A + + ++ V D T L
Sbjct: 124 HNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVA 183
Query: 83 TILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHR---ANVNSQDNEGHSVVHWA 139
+++ D ++ + LH AA + ++ +L ++ D G + +
Sbjct: 184 YLMKAGAD-PTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIV 242
Query: 140 TVCGEVEALETV---LSAGAE--------PSTPDIHGGYPIHYASQMCGHASEMGNDVRV 188
+ + + + GA+ + G +HYA+Q +
Sbjct: 243 AHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQ-VSN---------- 291
Query: 189 GLAVLKVLLHHN-VDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTAL 247
+ ++K L+ + + D+DG+ PI+ AA G + ++ L++ GA+VEA D TA
Sbjct: 292 -MPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTAR 350
Query: 248 HCAASRGHRECLETLITLCGADVD 271
A + H ++ C + +
Sbjct: 351 QLAQANNHHNIVDIFDR-CRPERE 373
Score = 87.7 bits (218), Expect = 8e-20
Identities = 19/160 (11%), Positives = 40/160 (25%), Gaps = 13/160 (8%)
Query: 163 IHGGY--PIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASA 220
I+ P + + + L + N + P
Sbjct: 12 INASVWMPPMENEEKNRKNHQSITSSQHSLLEASYDGYIKRQRNELQHYSLYPNPQGYGN 71
Query: 221 GSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSA 280
G+ + + LH A+ G E + ++ + +
Sbjct: 72 GNDFLGDFNHTNLQIPTEPEPESPIKLHTEAA-GSYAITEPITR-ESVNII-DPRHNRTV 128
Query: 281 LFYAVTLGHADATTLLLQY--------GATPNRQDRKGRT 312
L + + A+ + L+ + GA N D T
Sbjct: 129 LHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENT 168
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat,
alternative splicing, ANK repeat, chromatin regulator,
nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP:
k.37.1.1 PDB: 3b95_A*
Length = 237
Score = 173 bits (442), Expect = 2e-53
Identities = 56/222 (25%), Positives = 100/222 (45%), Gaps = 14/222 (6%)
Query: 92 IEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETV 151
+ ++ +PLH AA AG+V + H L+ AN+++ + + + A +EA++ +
Sbjct: 4 FKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYL 63
Query: 152 LSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHN-VDVNVVDKDG 210
+ AGA D G +H A++ GH V++ LL + +DVN D G
Sbjct: 64 IKAGALVDPKDAEGSTCLHLAAK-KGH-----------YEVVQYLLSNGQMDVNCQDDGG 111
Query: 211 RQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADV 270
P++WA D + L+ G+++ D + LH AA G + E L+ D+
Sbjct: 112 WTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLA-AKCDL 170
Query: 271 DVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
++ +G S L A D L L + ++++G T
Sbjct: 171 HAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGET 212
Score = 170 bits (434), Expect = 5e-52
Identities = 55/245 (22%), Positives = 108/245 (44%), Gaps = 15/245 (6%)
Query: 58 VRERDRTRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHT 117
+ + +++ LH AE + +++ + I+ ED TPL AA ++ +
Sbjct: 4 FKMEHQNKRSPLHAAAEAGHVDICHMLVQAGAN-IDTCSEDQRTPLMEAAENNHLEAVKY 62
Query: 118 LLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGA-EPSTPDIHGGYPIHYASQMC 176
L+ A V+ +D EG + +H A G E ++ +LS G + + D G P+ +A++
Sbjct: 63 LIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATE-Y 121
Query: 177 GHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANV 236
H + ++K+LL D+N+ D + + WAA +G D L+ A ++
Sbjct: 122 KH-----------VDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDL 170
Query: 237 EAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLL 296
A + G + LH AA +C+ ++ +DV + + G + L A + +
Sbjct: 171 HAVNIHGDSPLHIAARENRYDCVVLFLSR-DSDVTLKNKEGETPLQCASLNSQVWSALQM 229
Query: 297 LQYGA 301
+
Sbjct: 230 SKALQ 234
Score = 138 bits (350), Expect = 1e-39
Identities = 41/191 (21%), Positives = 73/191 (38%), Gaps = 14/191 (7%)
Query: 123 ANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEM 182
N + S +H A G V+ ++ AGA T P+ A++ H
Sbjct: 2 MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAE-NNH---- 56
Query: 183 GNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGA-NVEAHDK 241
L +K L+ V+ D +G + AA G + + L+ G +V D
Sbjct: 57 -------LEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDD 109
Query: 242 DGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGA 301
G T + A H + ++ L++ G+D+++ D L +A G D +LL
Sbjct: 110 GGWTPMIWATEYKHVDLVKLLLSK-GSDINIRDNEENICLHWAAFSGCVDIAEILLAAKC 168
Query: 302 TPNRQDRKGRT 312
+ + G +
Sbjct: 169 DLHAVNIHGDS 179
Score = 129 bits (327), Expect = 3e-36
Identities = 47/240 (19%), Positives = 88/240 (36%), Gaps = 47/240 (19%)
Query: 30 EGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAP 89
+ T LM AA+ VK ++ + V +D T LH A+ + +L
Sbjct: 43 DQRTPLMEAAENNHLEAVKYLIKAGAL-VDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQ 101
Query: 90 DLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALE 149
+ D+ G+TP+ A +V L+ LL+ +++N +DNE +
Sbjct: 102 MDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENI--------------- 146
Query: 150 TVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKD 209
+H+A+ G + + ++LL D++ V+
Sbjct: 147 ------------------CLHWAAFS-GC-----------VDIAEILLAAKCDLHAVNIH 176
Query: 210 GRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGAD 269
G P+ AA D ++ + ++V +K+G T L CA+ + D
Sbjct: 177 GDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKA-LQD 235
Score = 107 bits (269), Expect = 1e-27
Identities = 40/114 (35%), Positives = 55/114 (48%), Gaps = 2/114 (1%)
Query: 200 NVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECL 259
+++ + ++ R P+ AA AG D LV+AGAN++ +D T L AA H E +
Sbjct: 1 HMNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAV 60
Query: 260 ETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGAT-PNRQDRKGRT 312
+ LI GA VD D G + L A GH + LL G N QD G T
Sbjct: 61 KYLIK-AGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWT 113
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein
complex, transcription factors, nuclear localization,
DNA binding protein; 2.05A {Mus musculus} SCOP:
d.211.1.1 PDB: 1k3z_D
Length = 282
Score = 174 bits (444), Expect = 5e-53
Identities = 50/262 (19%), Positives = 83/262 (31%), Gaps = 9/262 (3%)
Query: 56 NAVRERDRTRKTVLHYCAENTILSCAETILE--VAPDLIEAADEDGYTPLHLAAIAGNVP 113
V T LH + + +L + ++ ++ G T LHLAAI G
Sbjct: 3 GYV---TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEAS 59
Query: 114 LIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPS--TPDIHGGYPIHY 171
+ L A A V + GH+ +H A +L D +
Sbjct: 60 TVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDC 119
Query: 172 ASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVK 231
+ + + + + + DG P+ A ++ + L
Sbjct: 120 TPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRD 179
Query: 232 AGANVEAHDKD-GLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHA 290
AGA++ + G T LH A LE L+ GAD G + L A+ +
Sbjct: 180 AGADLNKPEPTCGRTPLHLAVEAQAASVLELLLK-AGADPTARMYGGRTPLGSALLRPNP 238
Query: 291 DATTLLLQYGATPNRQDRKGRT 312
LL +GA +
Sbjct: 239 ILARLLRAHGAPEPEDGGDKLS 260
Score = 167 bits (425), Expect = 3e-50
Identities = 52/288 (18%), Positives = 90/288 (31%), Gaps = 31/288 (10%)
Query: 30 EGATSLMYAAQQGKDAEVKAILAS--RPNAVRERDRTRKTVLHYCAENTILSCAETILEV 87
+G T+L A + + +L + ++ +T LH A S E +
Sbjct: 8 DGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAA 67
Query: 88 APDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEG--------------H 133
+ A+ G+T LHLA LL R + ++
Sbjct: 68 GAG-VLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHA 126
Query: 134 SVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVL 193
+ E E + + G P+H A ++
Sbjct: 127 PAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVI-HKD-----------AEMV 174
Query: 194 KVLLHHNVDVNVVDKD-GRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAAS 252
++L D+N + GR P+ A A ++ + L+KAGA+ A G T L A
Sbjct: 175 RLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALL 234
Query: 253 RGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYG 300
R + L GA + S + + +D +Y
Sbjct: 235 RPNPILARLLRA-HGAPEPEDGGDKLSPCSSSGSDSDSDNRDEGDEYD 281
Score = 155 bits (394), Expect = 1e-45
Identities = 57/240 (23%), Positives = 87/240 (36%), Gaps = 31/240 (12%)
Query: 91 LIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRAN---VNSQDNEGHSVVHWATVCGEVEA 147
+ EDG T LHLA I + P + LL A ++ Q++ G + +H A + GE
Sbjct: 1 VFGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEAST 60
Query: 148 LETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVD 207
+E + +AGA + G +H A ++ VLL
Sbjct: 61 VEKLYAAGAGVLVAERGGHTALHLACRV-RA-----------HTCACVLLQPRPSHPRDA 108
Query: 208 KDGRQP--------------ILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASR 253
D + + ++ +EA + DG T LH A
Sbjct: 109 SDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIH 168
Query: 254 GHRECLETLITLCGADVDVIDTN-GCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
E + L GAD++ + G + L AV A LLL+ GA P + GRT
Sbjct: 169 KDAEMVRLLR-DAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRT 227
Score = 89.9 bits (224), Expect = 4e-21
Identities = 23/148 (15%), Positives = 43/148 (29%)
Query: 27 NTMEGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILE 86
+Q + E + + + T LH + + +
Sbjct: 120 TPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRD 179
Query: 87 VAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVE 146
DL + G TPLHLA A ++ LL A+ ++ G + + A +
Sbjct: 180 AGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPI 239
Query: 147 ALETVLSAGAEPSTPDIHGGYPIHYASQ 174
+ + GA P +
Sbjct: 240 LARLLRAHGAPEPEDGGDKLSPCSSSGS 267
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and
SOCS box-containing...; ASB9, ANK repeat, L-shaped,
structural protein; 2.20A {Homo sapiens}
Length = 285
Score = 174 bits (443), Expect = 6e-53
Identities = 56/275 (20%), Positives = 101/275 (36%), Gaps = 19/275 (6%)
Query: 38 AAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIEAADE 97
+ L R + + D + + L P + +A
Sbjct: 2 GSSHHHHHHSS-GLVPRGSHMASMDGKQGG-MDGSKPAGPRDFPGIRLLSNPLMGDA--V 57
Query: 98 DGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAE 157
++P+H AAI G+ + L++ VN + S +H A + G + ++ +L GA+
Sbjct: 58 SDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQ 117
Query: 158 PSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWA 217
+ P+ A G + +LL H V + D PI A
Sbjct: 118 VNGVTADWHTPLFNACV-SGS-----------WDCVNLLLQHGASVQ-PESDLASPIHEA 164
Query: 218 ASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNG 277
A G + + +L+ G N++ T L+ A R C++ L+ GADV+
Sbjct: 165 ARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLE-SGADVN-QGKGQ 222
Query: 278 CSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
S L V + LL+ +GA ++ +G+
Sbjct: 223 DSPLHAVVRTASEELACLLMDFGADTQAKNAEGKR 257
Score = 171 bits (436), Expect = 9e-52
Identities = 50/278 (17%), Positives = 94/278 (33%), Gaps = 25/278 (8%)
Query: 28 TMEGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEV 87
M+G+ G ++ + + +H A + ++
Sbjct: 30 GMDGSKPAGPRDFPGIRLLSNPLMG--------DAVSDWSPMHEAAIHGHQLSLRNLISQ 81
Query: 88 APDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEA 147
+ D +PLH A + G++ + LL H A VN + H+ + A V G +
Sbjct: 82 GWA-VNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDC 140
Query: 148 LETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVD 207
+ +L GA PIH A++ GH + + L+ + +++
Sbjct: 141 VNLLLQHGASVQPES-DLASPIHEAARR-GH-----------VECVNSLIAYGGNIDHKI 187
Query: 208 KDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCG 267
P+ A + L+++GA+V K + LH E L+ G
Sbjct: 188 SHLGTPLYLACENQQRACVKKLLESGADVNQ-GKGQDSPLHAVVRTASEELACLLMD-FG 245
Query: 268 ADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNR 305
AD + G + A L + GA+ +
Sbjct: 246 ADTQAKNAEGKRPVELVPPESPL-AQLFLEREGASLPK 282
Score = 147 bits (373), Expect = 2e-42
Identities = 50/245 (20%), Positives = 94/245 (38%), Gaps = 18/245 (7%)
Query: 27 NTMEGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILE 86
+ + + + AA G ++ +++ V + LH LSC + +L+
Sbjct: 55 DAVSDWSPMHEAAIHGHQLSLRNLISQGWA-VNIITADHVSPLHEACLGGHLSCVKILLK 113
Query: 87 VAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVE 146
+ D +TPL A ++G+ ++ LL H A+V +++ S +H A G VE
Sbjct: 114 HGAQ-VNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQP-ESDLASPIHEAARRGHVE 171
Query: 147 ALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVV 206
+ ++++ G H G P++ A + A +K LL DVN
Sbjct: 172 CVNSLIAYGGNIDHKISHLGTPLYLACE-NQQ-----------RACVKKLLESGADVNQ- 218
Query: 207 DKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLC 266
K P+ S + L+ GA+ +A + +G + L +
Sbjct: 219 GKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPPESPLAQL--FLERE 276
Query: 267 GADVD 271
GA +
Sbjct: 277 GASLP 281
Score = 136 bits (346), Expect = 1e-38
Identities = 41/208 (19%), Positives = 74/208 (35%), Gaps = 16/208 (7%)
Query: 105 LAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIH 164
+ + + L+ +++ S D + + + G + L + +
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMASMDGKQGGM-DGSKPAGPRDFPGIRLLSNPLMGD-AVS 58
Query: 165 GGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSD 224
P+H A+ GH L+ L+ VN++ D P+ A G
Sbjct: 59 DWSPMHEAAI-HGH-----------QLSLRNLISQGWAVNIITADHVSPLHEACLGGHLS 106
Query: 225 AILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYA 284
+ L+K GA V D T L A G +C+ L+ GA V +++ S + A
Sbjct: 107 CVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQH-GASVQ-PESDLASPIHEA 164
Query: 285 VTLGHADATTLLLQYGATPNRQDRKGRT 312
GH + L+ YG + + T
Sbjct: 165 ARRGHVECVNSLIAYGGNIDHKISHLGT 192
Score = 74.1 bits (183), Expect = 2e-15
Identities = 27/132 (20%), Positives = 52/132 (39%), Gaps = 4/132 (3%)
Query: 30 EGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAP 89
+ A+ + AA++G V +++A N + + T L+ EN +C + +LE
Sbjct: 156 DLASPIHEAARRGHVECVNSLIAYGGN-IDHKISHLGTPLYLACENQQRACVKKLLESGA 214
Query: 90 DLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALE 149
D+ + +PLH + L L+ A+ +++ EG V +
Sbjct: 215 DV--NQGKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPPESPLAQ-L 271
Query: 150 TVLSAGAEPSTP 161
+ GA P
Sbjct: 272 FLEREGASLPKP 283
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription
factors, ikappab proteins; 1.86A {Homo sapiens} SCOP:
d.211.1.1 PDB: 1k1b_A
Length = 241
Score = 172 bits (438), Expect = 1e-52
Identities = 57/250 (22%), Positives = 93/250 (37%), Gaps = 21/250 (8%)
Query: 60 ERDRTRKTVLHYCAENTILSCAETILEVAPDL---IEAADEDGYTPLHLAAIAGNVPLIH 116
D T LH L ++ + ++ + TPLHLA I ++
Sbjct: 4 RADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVR 63
Query: 117 TLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPST----PDIHGGYPIHYA 172
L+ A+ + D G + H A L +L + A + + G +H A
Sbjct: 64 LLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVA 123
Query: 173 SQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVD-KDGRQPILWAASAGSSDAILALVK 231
+++LL D++ VD K GR P++ A S + L++
Sbjct: 124 VN-TEC-----------QETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQ 171
Query: 232 AGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHAD 291
GANV A G +ALH A+ RG + TL+ GAD + + + + L A + D
Sbjct: 172 HGANVNAQMYSGSSALHSASGRGLLPLVRTLV-RSGADSSLKNCHNDTPLMVARSRRVID 230
Query: 292 ATTLLLQYGA 301
A
Sbjct: 231 ILRGKATRPA 240
Score = 167 bits (426), Expect = 8e-51
Identities = 56/231 (24%), Positives = 98/231 (42%), Gaps = 22/231 (9%)
Query: 91 LIEAADEDGYTPLHLAAIAGNVP----LIHTLLAHRANVNSQDNEGHSVVHWATVCGEVE 146
+ ADEDG TPLH+A + GN+P L++ ++ +N + +H A +
Sbjct: 1 MATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS 60
Query: 147 ALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHH----NVD 202
+ +++AGA P D HG H A + L+ LL +D
Sbjct: 61 VVRLLVTAGASPMALDRHGQTAAHLACE-HRS-----------PTCLRALLDSAAPGTLD 108
Query: 203 VNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHD-KDGLTALHCAASRGHRECLET 261
+ + DG + A + + + L++ GA+++A D K G + L A ++
Sbjct: 109 LEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQL 168
Query: 262 LITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
L+ GA+V+ +G SAL A G L++ GA + ++ T
Sbjct: 169 LL-QHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDT 218
Score = 152 bits (386), Expect = 8e-45
Identities = 54/242 (22%), Positives = 94/242 (38%), Gaps = 21/242 (8%)
Query: 30 EGATSLMYAAQQGKDAEVKAILASRPNA---VRERDRTRKTVLHYCAENTILSCAETILE 86
+G T L A QG V ++ + + R+T LH T+ S ++
Sbjct: 8 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVT 67
Query: 87 VAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRA----NVNSQDNEGHSVVHWATVC 142
A D G T HLA + + LL A ++ +++ +G + +H A
Sbjct: 68 AGAS-PMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNT 126
Query: 143 GEVEALETVLSAGAEPSTPDIHGGY-PIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNV 201
E ++ +L GA+ DI G P+ +A + L+++++LL H
Sbjct: 127 ECQETVQLLLERGADIDAVDIKSGRSPLIHAVEN-NS-----------LSMVQLLLQHGA 174
Query: 202 DVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLET 261
+VN G + A+ G + LV++GA+ + T L A SR + L
Sbjct: 175 NVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRG 234
Query: 262 LI 263
Sbjct: 235 KA 236
Score = 117 bits (296), Expect = 1e-31
Identities = 42/209 (20%), Positives = 79/209 (37%), Gaps = 17/209 (8%)
Query: 31 GATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILE---V 87
T L A + V+ ++ + + DR +T H E+ +C +L+
Sbjct: 46 RQTPLHLAVITTLPSVVRLLVTAGAS-PMALDRHGQTAAHLACEHRSPTCLRALLDSAAP 104
Query: 88 APDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQD-NEGHSVVHWATVCGEVE 146
+EA + DG T LH+A + LL A++++ D G S + A +
Sbjct: 105 GTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLS 164
Query: 147 ALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVV 206
++ +L GA + G +H AS G L +++ L+ D ++
Sbjct: 165 MVQLLLQHGANVNAQMYSGSSALHSASGR-GL-----------LPLVRTLVRSGADSSLK 212
Query: 207 DKDGRQPILWAASAGSSDAILALVKAGAN 235
+ P++ A S D + A+
Sbjct: 213 NCHNDTPLMVARSRRVIDILRGKATRPAS 241
Score = 81.0 bits (201), Expect = 4e-18
Identities = 29/130 (22%), Positives = 57/130 (43%), Gaps = 7/130 (5%)
Query: 30 EGATSLMYAAQQGKDAEVKAILASR---PNAVRERDRTRKTVLHYCAENTILSCAETILE 86
+G T+L A V+ +L R +AV + ++ L + EN LS + +L+
Sbjct: 115 DGLTALHVAVNTECQETVQ-LLLERGADIDAVDIKSG--RSPLIHAVENNSLSMVQLLLQ 171
Query: 87 VAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVE 146
+ + A G + LH A+ G +PL+ TL+ A+ + ++ + + A ++
Sbjct: 172 HGAN-VNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVID 230
Query: 147 ALETVLSAGA 156
L + A
Sbjct: 231 ILRGKATRPA 240
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription
regulation, autoantibody; 2.58A {Homo sapiens}
Length = 261
Score = 172 bits (439), Expect = 2e-52
Identities = 53/273 (19%), Positives = 98/273 (35%), Gaps = 19/273 (6%)
Query: 29 MEGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVA 88
M + + AA G ++ +++ V + LH LSC + +L+
Sbjct: 1 MSDWSPMHEAAIHGHQLSLRNLISQGWA-VNIITADHVSPLHEACLGGHLSCVKILLKHG 59
Query: 89 PDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEAL 148
+ D +TPL A ++G+ ++ LL H A+V +++ S +H A G VE +
Sbjct: 60 AQ-VNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQP-ESDLASPIHEAARRGHVECV 117
Query: 149 ETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDK 208
++++ G H G P++ A + A +K LL DVN K
Sbjct: 118 NSLIAYGGNIDHKISHLGTPLYLACE-NQQ-----------RACVKKLLESGADVNQ-GK 164
Query: 209 DGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGA 268
P+ A S + L+ GA+ +A + +G + + +
Sbjct: 165 GQDSPLHAVARTASEELACLLMDFGADTQAKNAEGKRPVELVPPESP--LAQLFL-EREG 221
Query: 269 DVDVIDTNGCSALFYAVTLGHADATTLLLQYGA 301
++ H T L+L
Sbjct: 222 PPSLMQLCRLRIRKCFGIQQHHKITKLVLPEDL 254
Score = 171 bits (435), Expect = 6e-52
Identities = 47/247 (19%), Positives = 85/247 (34%), Gaps = 18/247 (7%)
Query: 66 KTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANV 125
+ +H A + ++ + D +PLH A + G++ + LL H A V
Sbjct: 4 WSPMHEAAIHGHQLSLRNLISQGWA-VNIITADHVSPLHEACLGGHLSCVKILLKHGAQV 62
Query: 126 NSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGND 185
N + H+ + A V G + + +L GA PIH A++ GH
Sbjct: 63 NGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES-DLASPIHEAAR-RGH------- 113
Query: 186 VRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLT 245
+ + L+ + +++ P+ A + L+++GA+V K +
Sbjct: 114 ----VECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ-GKGQDS 168
Query: 246 ALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNR 305
LH A E L+ GAD + G + L L+ P+
Sbjct: 169 PLHAVARTASEELACLLMD-FGADTQAKNAEGKRPVELVPPESP--LAQLFLEREGPPSL 225
Query: 306 QDRKGRT 312
Sbjct: 226 MQLCRLR 232
Score = 167 bits (425), Expect = 2e-50
Identities = 49/215 (22%), Positives = 87/215 (40%), Gaps = 15/215 (6%)
Query: 98 DGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAE 157
++P+H AAI G+ + L++ VN + S +H A + G + ++ +L GA+
Sbjct: 2 SDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQ 61
Query: 158 PSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWA 217
+ P+ A G + +LL H V + D PI A
Sbjct: 62 VNGVTADWHTPLFNACVS-GS-----------WDCVNLLLQHGASVQ-PESDLASPIHEA 108
Query: 218 ASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNG 277
A G + + +L+ G N++ T L+ A R C++ L+ GADV+
Sbjct: 109 ARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLE-SGADVN-QGKGQ 166
Query: 278 CSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
S L + LL+ +GA ++ +G+
Sbjct: 167 DSPLHAVARTASEELACLLMDFGADTQAKNAEGKR 201
Score = 141 bits (358), Expect = 2e-40
Identities = 35/236 (14%), Positives = 85/236 (36%), Gaps = 18/236 (7%)
Query: 28 TMEGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEV 87
T + + L A G + VK +L V T L + C +L+
Sbjct: 33 TADHVSPLHEACLGGHLSCVKILLKHGAQ-VNGVTADWHTPLFNACVSGSWDCVNLLLQH 91
Query: 88 APDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEA 147
++ + D +P+H AA G+V +++L+A+ N++ + + + ++ A +
Sbjct: 92 GAS-VQP-ESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRAC 149
Query: 148 LETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVD 207
++ +L +GA+ + P+H ++ + +L+ D +
Sbjct: 150 VKKLLESGADVNQGK-GQDSPLHAVART-AS-----------EELACLLMDFGADTQAKN 196
Query: 208 KDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLI 263
+G++P+ ++ L C + H + + ++
Sbjct: 197 AEGKRPVELVPPES--PLAQLFLEREGPPSLMQLCRLRIRKCFGIQQHHKITKLVL 250
Score = 72.1 bits (178), Expect = 9e-15
Identities = 21/132 (15%), Positives = 43/132 (32%), Gaps = 5/132 (3%)
Query: 26 HNTMEGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETIL 85
H T L A + + A VK +L S + + + + + LH A A ++
Sbjct: 129 HKISHLGTPLYLACENQQRACVKKLLESGADV--NQGKGQDSPLHAVARTASEELACLLM 186
Query: 86 EVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEV 145
+ D +A + +G P+ L + L + + +
Sbjct: 187 DFGAD-TQAKNAEGKRPVELVPPESPL--AQLFLEREGPPSLMQLCRLRIRKCFGIQQHH 243
Query: 146 EALETVLSAGAE 157
+ + VL +
Sbjct: 244 KITKLVLPEDLK 255
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT
signaling, POL ribosylation, transferase-signaling
protein complex; 2.00A {Mus musculus}
Length = 351
Score = 174 bits (445), Expect = 2e-52
Identities = 67/286 (23%), Positives = 108/286 (37%), Gaps = 31/286 (10%)
Query: 31 GATSLMYAAQQGKDAEVKAILASRPNA-VRERDRTRKTVLHYCAENTILSCAETILEVAP 89
L+ AA+ G + ++ A+L N D + T LH A + + +L+
Sbjct: 24 KKDELLEAARSGNEEKLMALLTPL-NVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGA 82
Query: 90 DLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALE 149
D + A D+ G PLH A G+ + LL H A VN+ D + +H A VE
Sbjct: 83 D-VHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCS 141
Query: 150 TVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKD 209
+LS GA+P+ + HG + A L +
Sbjct: 142 LLLSHGADPTLVNCHGKSAVDMAPTP-EL-----------RERLTYEFKGH--------- 180
Query: 210 GRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLET---LITLC 266
+L AA + + + TALHCA + H + + L+
Sbjct: 181 ---SLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRK- 236
Query: 267 GADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
GA+V+ + + + L A H D +L ++GA N D G+T
Sbjct: 237 GANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQT 282
Score = 174 bits (444), Expect = 3e-52
Identities = 72/306 (23%), Positives = 105/306 (34%), Gaps = 38/306 (12%)
Query: 30 EGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAP 89
+T L AA + V+ +L + V +D+ LH E +L+
Sbjct: 57 RKSTPLHLAAGYNRVRIVQLLLQHGAD-VHAKDKGGLVPLHNACSYGHYEVTELLLKHGA 115
Query: 90 DLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALE 149
+ A D +TPLH AA V + LL+H A+ + G S V A E L
Sbjct: 116 C-VNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLT 174
Query: 150 ---------------------TVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRV 188
L+ +H A H
Sbjct: 175 YEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVA-SLHPK-------- 225
Query: 189 GLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALH 248
V ++LL +VN +KD P+ AA +D + L K GA + A D G TALH
Sbjct: 226 RKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALH 285
Query: 249 CAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDR 308
AA GH + L++ G+D +I G +A +A +L D
Sbjct: 286 RAALAGHLQTCRLLLS-YGSDPSIISLQGFTAAQMG-----NEAVQQILSESTPMRTSDV 339
Query: 309 KGRTYE 314
R E
Sbjct: 340 DYRLLE 345
Score = 157 bits (399), Expect = 1e-45
Identities = 55/245 (22%), Positives = 83/245 (33%), Gaps = 36/245 (14%)
Query: 92 IEAADEDGYTPLHLAAIAGNVPLIHTLL-AHRANVNSQDNEGHSVVHWATVCGEVEALET 150
E L AA +GN + LL N ++ D + +H A V ++
Sbjct: 17 AVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQL 76
Query: 151 VLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDG 210
+L GA+ D G P+H A GH V ++LL H VN +D
Sbjct: 77 LLQHGADVHAKDKGGLVPLHNACS-YGH-----------YEVTELLLKHGACVNAMDLWQ 124
Query: 211 RQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLIT------ 264
P+ AAS + L+ GA+ + G +A+ A + RE L
Sbjct: 125 FTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQ 184
Query: 265 --------------LCGADVDVIDTNGCSALFYAVTLGHA---DATTLLLQYGATPNRQD 307
+ +AL AV H LLL+ GA N ++
Sbjct: 185 AAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKN 244
Query: 308 RKGRT 312
+ T
Sbjct: 245 KDFMT 249
Score = 131 bits (333), Expect = 6e-36
Identities = 40/161 (24%), Positives = 66/161 (40%), Gaps = 12/161 (7%)
Query: 152 LSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGR 211
A+ + + A++ ++ +L NV+ + D
Sbjct: 11 ADPSAKAVLTGEYKKDELLEAARSGNE-----------EKLMALLTPLNVNCHASDGRKS 59
Query: 212 QPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVD 271
P+ AA + L++ GA+V A DK GL LH A S GH E E L+ GA V+
Sbjct: 60 TPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLK-HGACVN 118
Query: 272 VIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
+D + L A + + +LLL +GA P + G++
Sbjct: 119 AMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKS 159
Score = 117 bits (296), Expect = 1e-30
Identities = 35/118 (29%), Positives = 52/118 (44%), Gaps = 2/118 (1%)
Query: 196 LLHHNVDVNVVDKDGRQPILWAASAGSSDAILA-LVKAGANVEAHDKDGLTALHCAASRG 254
L + + + + +L AA +G+ + ++A L N A D T LH AA
Sbjct: 10 LADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYN 69
Query: 255 HRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
++ L+ GADV D G L A + GH + T LLL++GA N D T
Sbjct: 70 RVRIVQLLLQH-GADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFT 126
Score = 115 bits (290), Expect = 7e-30
Identities = 39/248 (15%), Positives = 76/248 (30%), Gaps = 43/248 (17%)
Query: 30 EGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAP 89
T L AA + + +L+ + + K+ + + +
Sbjct: 123 WQFTPLHEAASKNRVEVCSLLLSHGAD-PTLVNCHGKSAVDMAPTPELRERLTYEFKGHS 181
Query: 90 DL--------------------IEAADEDGYTPLHLAAIAGNVPLIHT---LLAHRANVN 126
L + T LH A + + LL ANVN
Sbjct: 182 LLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVN 241
Query: 127 SQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDV 186
++ + + +H A + +E + GA+ + D G +H A+ GH
Sbjct: 242 EKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAAL-AGH-------- 292
Query: 187 RVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTA 246
L ++LL + D +++ G +A+ ++ + D D
Sbjct: 293 ---LQTCRLLLSYGSDPSIISLQGFTAAQMGN-----EAVQQILSESTPMRTSDVDY--R 342
Query: 247 LHCAASRG 254
L A+ G
Sbjct: 343 LLEASKAG 350
Score = 83.3 bits (207), Expect = 2e-18
Identities = 22/87 (25%), Positives = 31/87 (35%)
Query: 226 ILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAV 285
L L A + L AA G+ E L L+T + D + L A
Sbjct: 7 ALDLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAA 66
Query: 286 TLGHADATTLLLQYGATPNRQDRKGRT 312
LLLQ+GA + +D+ G
Sbjct: 67 GYNRVRIVQLLLQHGADVHAKDKGGLV 93
Score = 42.9 bits (102), Expect = 8e-05
Identities = 17/82 (20%), Positives = 28/82 (34%), Gaps = 9/82 (10%)
Query: 30 EGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAP 89
G T+L AA G + +L+ + T E + IL +
Sbjct: 279 LGQTALHRAALAGHLQTCRLLLSYGSD-PSIISLQGFTAAQMGNEA-----VQQILSEST 332
Query: 90 DLIEAADEDGYTPLHLAAIAGN 111
+ +D D L A+ AG+
Sbjct: 333 P-MRTSDVDY--RLLEASKAGD 351
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase
(M130), serine/threonine protein phosphatase PP1-beta
(OR delta) catalytic subunit; myosin phosphatase; HET:
PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Length = 299
Score = 169 bits (432), Expect = 5e-51
Identities = 65/296 (21%), Positives = 113/296 (38%), Gaps = 21/296 (7%)
Query: 30 EGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAP 89
+ + G + +++ + R + + L C+ +LE
Sbjct: 7 KQKRNEQLKRWIGSETDLEPPVVKRKK-TKVKFDDGAVFLAACSSG-DTEEVLRLLERGA 64
Query: 90 DLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALE 149
D I A+ DG T LH A I NV ++ L+ + AN+N DNEG +H A CG ++ E
Sbjct: 65 D-INYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAE 123
Query: 150 TVLSAGAEPSTPDIHGGYPIHYASQMCGHA-------SEMGNDVRVGL---------AVL 193
++S GA + G P+ A + + G D+
Sbjct: 124 YLISQGAHVGAVNSEGDTPLDIAEE-EAMEELLQNEVNRQGVDIEAARKEEERIMLRDAR 182
Query: 194 KVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASR 253
+ L +++ K G + AA+ G ++ + L++A +V D DG T LH AA
Sbjct: 183 QWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHW 242
Query: 254 GHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRK 309
G E L+ D++ ++ G +A A L + + + K
Sbjct: 243 GKEEACRILV-ENLCDMEAVNKVGQTAFDVADEDILGYLEELQKKQNLLHSEKREK 297
Score = 151 bits (385), Expect = 4e-44
Identities = 47/221 (21%), Positives = 85/221 (38%), Gaps = 20/221 (9%)
Query: 92 IEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETV 151
++ AD L G+ + + R + ++G +V A G+ E + +
Sbjct: 1 MKMADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDG-AVFLAACSSGDTEEVLRL 59
Query: 152 LSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGR 211
L GA+ + ++ G +H A + + ++K L+ + ++N D +G
Sbjct: 60 LERGADINYANVDGLTALHQACI-DDN-----------VDMVKFLVENGANINQPDNEGW 107
Query: 212 QPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVD 271
P+ AAS G D L+ GA+V A + +G T L A E L+ + G D++
Sbjct: 108 IPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIE 167
Query: 272 VIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
+A + DA L R + G T
Sbjct: 168 -------AARKEEERIMLRDARQWLNSGHINDVRHAKSGGT 201
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell
cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A
2f8x_K 3nbn_B 3v79_K* 1ot8_A
Length = 253
Score = 165 bits (421), Expect = 7e-50
Identities = 63/277 (22%), Positives = 96/277 (34%), Gaps = 35/277 (12%)
Query: 31 GATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPD 90
G T LM A+ G + E + +
Sbjct: 10 GFTPLMIASCSGG---------------------GLETGNSEEEEDAPAVISDFIYQGAS 48
Query: 91 LIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALET 150
L D G T LHLAA LL A+ N QDN G + +H A +
Sbjct: 49 LHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQI 108
Query: 151 VLSAGA-EPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKD 209
++ A + G P+ A+++ +L+ L++ + DVN VD
Sbjct: 109 LIRNRATDLDARMHDGTTPLILAARL-AV-----------EGMLEDLINSHADVNAVDDL 156
Query: 210 GRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGAD 269
G+ + WAA+ + DA + L+K GAN + + T L AA G E + L+ A+
Sbjct: 157 GKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDH-FAN 215
Query: 270 VDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQ 306
D+ D A H D LL +
Sbjct: 216 RDITDHMDRLPRDIAQERMHHDIVRLLDLEHHHHHHH 252
Score = 160 bits (407), Expect = 8e-48
Identities = 54/236 (22%), Positives = 95/236 (40%), Gaps = 28/236 (11%)
Query: 92 IEAADEDGYTPLHLAAIAGNVPLIHT-------------LLAHRANV-NSQDNEGHSVVH 137
+ DG+TPL +A+ +G + A++ N D G + +H
Sbjct: 3 VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALH 62
Query: 138 WATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLL 197
A +A + +L A A+ + D G P+H A V ++L+
Sbjct: 63 LAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVS-ADA-----------QGVFQILI 110
Query: 198 -HHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHR 256
+ D++ DG P++ AA + L+ + A+V A D G +ALH AA+ +
Sbjct: 111 RNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNV 170
Query: 257 ECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
+ L+ GA+ D+ + + LF A G + +LL + A + D R
Sbjct: 171 DAAVVLL-KNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRL 225
Score = 92.1 bits (230), Expect = 4e-22
Identities = 32/127 (25%), Positives = 53/127 (41%), Gaps = 16/127 (12%)
Query: 201 VDVNVVDKDGRQPILWAASAGSSDAILA-------------LVKAGANVEAH-DKDGLTA 246
+DVNV DG P++ A+ +G + GA++ D+ G TA
Sbjct: 1 MDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETA 60
Query: 247 LHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGAT-PNR 305
LH AA + + L+ AD ++ D G + L AV+ +L++ AT +
Sbjct: 61 LHLAARYSRSDAAKRLL-EASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDA 119
Query: 306 QDRKGRT 312
+ G T
Sbjct: 120 RMHDGTT 126
Score = 77.9 bits (193), Expect = 6e-17
Identities = 28/127 (22%), Positives = 51/127 (40%), Gaps = 2/127 (1%)
Query: 30 EGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAP 89
+G T L+ AA+ + ++ ++ S + V D K+ LH+ A + A +L+
Sbjct: 123 DGTTPLILAARLAVEGMLEDLINSHAD-VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGA 181
Query: 90 DLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALE 149
+ + + TPL LAA G+ LL H AN + D+ A + +
Sbjct: 182 N-KDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVR 240
Query: 150 TVLSAGA 156
+
Sbjct: 241 LLDLEHH 247
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit);
transcription factor, IKB/NFKB complex; 2.30A {Homo
sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Length = 236
Score = 164 bits (417), Expect = 1e-49
Identities = 56/231 (24%), Positives = 88/231 (38%), Gaps = 24/231 (10%)
Query: 93 EAADEDGYTPLHLAAIAGNVP----LIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEAL 148
+ EDG + LHLA I +I + A +N Q+N + +H A + + E
Sbjct: 2 QQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIA 61
Query: 149 ETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVD------ 202
E +L AG +P D G P+H A + G LA + VL
Sbjct: 62 EALLGAGCDPELRDFRGNTPLHLACEQ-GC-----------LASVGVLTQSCTTPHLHSI 109
Query: 203 VNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDK-DGLTALHCAASRGHRECLET 261
+ + +G + A+ G + LV GA+V A + +G TALH A + + +
Sbjct: 110 LKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSL 169
Query: 262 LITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
L+ CGADV+ + G S L Q + +
Sbjct: 170 LL-KCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESED 219
Score = 148 bits (377), Expect = 1e-43
Identities = 42/244 (17%), Positives = 82/244 (33%), Gaps = 23/244 (9%)
Query: 60 ERDRTRKTVLHYCAENTILSCAETILEVAPD---LIEAADEDGYTPLHLAAIAGNVPLIH 116
+ + LH + + ++ + + TPLHLA I +
Sbjct: 3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAE 62
Query: 117 TLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTP------DIHGGYPIH 170
LL + +D G++ +H A G + ++ + + P + +G +H
Sbjct: 63 ALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLH 122
Query: 171 YASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDK-DGRQPILWAASAGSSDAILAL 229
AS G+ L ++++L+ DVN + +GR + A + D + L
Sbjct: 123 LASI-HGY-----------LGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLL 170
Query: 230 VKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGH 289
+K GA+V G + R + L L + + Y
Sbjct: 171 LKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQL-TLENLQMLPESEDEESYDTESEF 229
Query: 290 ADAT 293
+ T
Sbjct: 230 TEFT 233
Score = 127 bits (321), Expect = 2e-35
Identities = 47/241 (19%), Positives = 81/241 (33%), Gaps = 23/241 (9%)
Query: 30 EGATSLMYAAQQG---KDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILE 86
+G + L A EV + + ++ ++T LH AE +L
Sbjct: 7 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLG 66
Query: 87 VAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRAN------VNSQDNEGHSVVHWAT 140
D E D G TPLHLA G + + L + + + GH+ +H A+
Sbjct: 67 AGCD-PELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLAS 125
Query: 141 VCGEVEALETVLSAGAEPSTPDIHGGY-PIHYASQMCGHASEMGNDVRVGLAVLKVLLHH 199
+ G + +E ++S GA+ + + G +H A + + ++ +LL
Sbjct: 126 IHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDL-QN-----------PDLVSLLLKC 173
Query: 200 NVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECL 259
DVN V G P S+ L + + E
Sbjct: 174 GADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEFTEFT 233
Query: 260 E 260
E
Sbjct: 234 E 234
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin
repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A
1ymp_A
Length = 223
Score = 162 bits (413), Expect = 4e-49
Identities = 57/229 (24%), Positives = 89/229 (38%), Gaps = 14/229 (6%)
Query: 77 ILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVV 136
+ + L D G T LHLAA LL A+ N QDN G + +
Sbjct: 3 APAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPL 62
Query: 137 HWATVCGEVEALETVLSAGA-EPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKV 195
H A + ++ A + G P+ A+++ +L+
Sbjct: 63 HAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARL-AV-----------EGMLED 110
Query: 196 LLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGH 255
L++ + DVN VD G+ + WAA+ + DA + L+K GAN + + T L AA G
Sbjct: 111 LINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGS 170
Query: 256 RECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPN 304
E + L+ A+ D+ D A H D LL +Y +
Sbjct: 171 YETAKVLL-DHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRS 218
Score = 119 bits (302), Expect = 9e-33
Identities = 48/169 (28%), Positives = 73/169 (43%), Gaps = 15/169 (8%)
Query: 146 EALETVLSAGAE-PSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVN 204
+ + GA + D G +H A++ K LL + D N
Sbjct: 5 AVISDFIYQGASLHNQTDRTGETALHLAAR-YSR-----------SDAAKRLLEASADAN 52
Query: 205 VVDKDGRQPILWAASAGSSDAILALVKAGA-NVEAHDKDGLTALHCAASRGHRECLETLI 263
+ D GR P+ A SA + L++ A +++A DG T L AA LE LI
Sbjct: 53 IQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLI 112
Query: 264 TLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
ADV+ +D G SAL +A + + DA +LL+ GA + Q+ + T
Sbjct: 113 -NSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREET 160
Score = 117 bits (297), Expect = 6e-32
Identities = 51/219 (23%), Positives = 82/219 (37%), Gaps = 20/219 (9%)
Query: 30 EGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAP 89
G T+L AA+ + K +L + + +D +T LH + ++
Sbjct: 24 TGETALHLAARYSRSDAAKRLLEASAD-ANIQDNMGRTPLHAAVSADAQGVFQILIRNRA 82
Query: 90 DLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALE 149
++A DG TPL LAA ++ L+ A+VN+ D+ G S +HWA V+A
Sbjct: 83 TDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAV 142
Query: 150 TVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKD 209
+L GA + P+ A++ G KVLL H + ++ D
Sbjct: 143 VLLKNGANKDMQNNREETPLFLAAR-EGS-----------YETAKVLLDHFANRDITDHM 190
Query: 210 GRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALH 248
R P A D + L + LH
Sbjct: 191 DRLPRDIAQERMHHDIVRLLDEYNL-------VRSPQLH 222
Score = 83.6 bits (208), Expect = 3e-19
Identities = 32/137 (23%), Positives = 53/137 (38%), Gaps = 5/137 (3%)
Query: 30 EGATSLMYAAQQGKDAEVKAILASRPNA-VRERDRTRKTVLHYCAENTILSCAETILEVA 88
+G T L+ AA+ + L + +A V D K+ LH+ A + A +L+
Sbjct: 91 DGTTPLILAARLAV-EGMLEDLINS-HADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNG 148
Query: 89 PDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEAL 148
+ + + TPL LAA G+ LL H AN + D+ A + +
Sbjct: 149 AN-KDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIV 207
Query: 149 ETVLSAGAEPSTPDIHG 165
+ S +HG
Sbjct: 208 RLLDEYNLVRSP-QLHG 223
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural
genomics of pathogenic protozoa consortium, SGPP, ANK
repeat; 2.90A {Leishmania major}
Length = 364
Score = 164 bits (417), Expect = 4e-48
Identities = 46/307 (14%), Positives = 79/307 (25%), Gaps = 47/307 (15%)
Query: 26 HNTMEGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETIL 85
H+ G + A K V A++ + E
Sbjct: 79 HSLWHGQKPIHLAVMANKTDLVVALVEG-------AKERGQMPESLLNEC-------DER 124
Query: 86 EVAPDLIEAADEDGYTPLHLAAIAGNVPL--IHTLLAHRANVNSQDNEGHSVVHWATVCG 143
EV G T LH G L I L+ A+ ++D + + A
Sbjct: 125 EVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFR 184
Query: 144 EVEALETVL-----SAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLH 198
EAL+ ++ + + G +H+A V +
Sbjct: 185 NREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAIL-INW-----------EDVAMRFVE 232
Query: 199 HNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANV---EAHDKDGLTA--------- 246
+DVN+ D + P+ + A L++ +G T
Sbjct: 233 MGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLD 292
Query: 247 -LHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNR 305
+ AA +E L+ L +V G + L A
Sbjct: 293 FVPAAADPSKQEVLQLLQE-KLDEVVRSLNTGAGGAVKRKKKAAPAVKRMKLAPSAPVRT 351
Query: 306 QDRKGRT 312
+ R
Sbjct: 352 RSRSRAR 358
Score = 160 bits (406), Expect = 1e-46
Identities = 48/261 (18%), Positives = 85/261 (32%), Gaps = 33/261 (12%)
Query: 58 VRERDRTRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHT 117
+ D +H A ++E + G T LHLA G V
Sbjct: 13 RIKSDDENMEKIHVAARKGQTDEVRRLIETGVS-PTIQNRFGCTALHLACKFGCVDTAKY 71
Query: 118 LLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCG 177
L + + G +H A + + + + ++ E G P ++ C
Sbjct: 72 LASVGEVHSLWH--GQKPIHLAVMANKTDLVVALVEGAKE------RGQMPESLLNE-CD 122
Query: 178 HASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSS--DAILALVKAGAN 235
V + + +V G+ + W G + I LV+ GA+
Sbjct: 123 E-----------REVNE------IGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGAS 165
Query: 236 VEAHDKDGLTALHCAASRGHRECLETLITLC----GADVDVIDTNGCSALFYAVTLGHAD 291
A DK T L A +RE L+ ++ +D + G S L +A+ + D
Sbjct: 166 PTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWED 225
Query: 292 ATTLLLQYGATPNRQDRKGRT 312
++ G N +D +
Sbjct: 226 VAMRFVEMGIDVNMEDNEHTV 246
Score = 158 bits (402), Expect = 5e-46
Identities = 48/326 (14%), Positives = 99/326 (30%), Gaps = 62/326 (19%)
Query: 30 EGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAEN-------------- 75
E + AA++G+ EV+ ++ + + ++R T LH +
Sbjct: 19 ENMEKIHVAARKGQTDEVRRLIETGVS-PTIQNRFGCTALHLACKFGCVDTAKYLASVGE 77
Query: 76 --------TILSCAETI--LEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANV 125
+ A ++ L+E A E G P L +
Sbjct: 78 VHSLWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVN------EIGS 131
Query: 126 NSQDNEGHSVVHWATVCGE--VEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMG 183
+ + +G + +HW G +E ++ ++ GA P+ D P+ A + +
Sbjct: 132 HVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEF-RN----- 185
Query: 184 NDVRVGLAVLKVLLH-----HNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEA 238
L +++ ++ ++ +K G + WA D + V+ G +V
Sbjct: 186 ------REALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNM 239
Query: 239 HDKDGLTALHCAASRGHRECLETLI------------TLCGADVDVIDTNGCSALFYAVT 286
D + L+ + + L+ G V + A
Sbjct: 240 EDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAAD 299
Query: 287 LGHADATTLLLQYGATPNRQDRKGRT 312
+ LL + R G
Sbjct: 300 PSKQEVLQLLQEKLDEVVRSLNTGAG 325
Score = 118 bits (299), Expect = 5e-31
Identities = 41/194 (21%), Positives = 70/194 (36%), Gaps = 29/194 (14%)
Query: 121 HRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHAS 180
+ N D+E +H A G+ + + ++ G P+ + G +H A + G
Sbjct: 9 PKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACK-FGC-- 65
Query: 181 EMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHD 240
+ K L + G++PI A A +D ++ALV+
Sbjct: 66 ---------VDTAKYLASVGEVHS--LWHGQKPIHLAVMANKTDLVVALVEGAKE----- 109
Query: 241 KDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLG--HADATTLLLQ 298
G RE E V G +AL + V LG + + +L+Q
Sbjct: 110 -RGQMPESLLNECDEREVNE-------IGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQ 161
Query: 299 YGATPNRQDRKGRT 312
GA+P +D+ T
Sbjct: 162 LGASPTAKDKADET 175
Score = 99.6 bits (249), Expect = 5e-24
Identities = 22/108 (20%), Positives = 41/108 (37%), Gaps = 3/108 (2%)
Query: 198 HHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRE 257
++ D + + I AA G +D + L++ G + ++ G TALH A G +
Sbjct: 8 FPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVD 67
Query: 258 CLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNR 305
+ L + G +G + AV D L++ +
Sbjct: 68 TAKYLAS-VGEVHS--LWHGQKPIHLAVMANKTDLVVALVEGAKERGQ 112
Score = 81.1 bits (201), Expect = 2e-17
Identities = 19/84 (22%), Positives = 30/84 (35%), Gaps = 3/84 (3%)
Query: 229 LVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLG 288
N D + + +H AA +G + + LI G + + GC+AL A G
Sbjct: 6 TDFPKLNRIKSDDENMEKIHVAARKGQTDEVRRLI-ETGVSPTIQNRFGCTALHLACKFG 64
Query: 289 HADATTLLLQYGATPNRQDRKGRT 312
D L G + G+
Sbjct: 65 CVDTAKYLASVGEVHSLWH--GQK 86
Score = 47.2 bits (113), Expect = 3e-06
Identities = 11/51 (21%), Positives = 18/51 (35%)
Query: 262 LITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
+ + D + A G D L++ G +P Q+R G T
Sbjct: 5 MTDFPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCT 55
Score = 41.4 bits (98), Expect = 2e-04
Identities = 6/81 (7%), Positives = 18/81 (22%), Gaps = 2/81 (2%)
Query: 26 HNTMEGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETIL 85
+ + + AA K ++ + V T + + L
Sbjct: 285 PDRVVWLDFVPAAADPSKQEVLQLLQEKLDE-VVRSLNTGAGGAVKRKKKAAPAVKRMKL 343
Query: 86 EVAPDLIEAADEDGYTPLHLA 106
+ + ++
Sbjct: 344 APSAP-VRTRSRSRARSSAVS 363
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats,
A-helical domain, structural genomics, NPPSFA; 2.20A
{Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A
1ixv_A 1wg0_A
Length = 228
Score = 156 bits (398), Expect = 7e-47
Identities = 59/221 (26%), Positives = 91/221 (41%), Gaps = 19/221 (8%)
Query: 99 GYTPLHLAAIAGNVPLIHTLL-AHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAE 157
PLH A + + LL + + + +D +G +HW+ E +LS
Sbjct: 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMEN 61
Query: 158 PSTPDIHGGY---PIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNV--DVNVVDKDGRQ 212
+ D P H A + G+ L V+K L + D+N + G
Sbjct: 62 VNLDDYPDDSGWTPFHIACSV-GN-----------LEVVKSLYDRPLKPDLNKITNQGVT 109
Query: 213 PILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDV 272
+ A + L++ GA+V DK LH AAS G + +E L L + V+
Sbjct: 110 CLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNW 169
Query: 273 IDTNGCSALFYAVTLGHADATTLLL-QYGATPNRQDRKGRT 312
D G + LF+A+ GH DA LL+ +YGA + D KG
Sbjct: 170 QDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAK 210
Score = 145 bits (368), Expect = 2e-42
Identities = 56/226 (24%), Positives = 87/226 (38%), Gaps = 18/226 (7%)
Query: 66 KTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANV 125
LH + +L P L+ D+DG PLH + + LL+ NV
Sbjct: 3 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV 62
Query: 126 NSQ---DNEGHSVVHWATVCGEVEALETVLS--AGAEPSTPDIHGGYPIHYASQMCGHAS 180
N D+ G + H A G +E ++++ + + G +H A
Sbjct: 63 NLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVG-KKW-- 119
Query: 181 EMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGAN-VEAH 239
V + L+ + V + DK + P+ AAS GS I L G + V
Sbjct: 120 ---------FEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQ 170
Query: 240 DKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAV 285
DK G T L A + GH + L+ GA+ D++D G A A+
Sbjct: 171 DKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL 216
Score = 93.7 bits (234), Expect = 8e-23
Identities = 41/232 (17%), Positives = 62/232 (26%), Gaps = 80/232 (34%)
Query: 30 EGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAP 89
G T A G VK++
Sbjct: 71 SGWTPFHIACSVGNLEVVKSLYDRPLKP-------------------------------- 98
Query: 90 DLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALE 149
+ G T LHLA + L+ + A+V +D
Sbjct: 99 -DLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQI--------------- 142
Query: 150 TVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLL-HHNVDVNVVDK 208
P+H A+ G L ++++L VN DK
Sbjct: 143 ------------------PLHRAAS-VGS-----------LKLIELLCGLGKSAVNWQDK 172
Query: 209 DGRQPILWAASAGSSDAILALV-KAGANVEAHDKDGLTALHCAASRGHRECL 259
G P+ A + G DA + LV K GA + D G A A + ++
Sbjct: 173 QGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQVKKFF 224
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix,
SH3, ankyrin repeat, signaling protein, ANK repeat,
cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB:
3ehq_A
Length = 222
Score = 156 bits (396), Expect = 1e-46
Identities = 41/220 (18%), Positives = 71/220 (32%), Gaps = 19/220 (8%)
Query: 94 AADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLS 153
+ G + A L ++ + + T G L
Sbjct: 7 KPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTG-----LI 61
Query: 154 AGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQP 213
+ P+H A++ G+ L+ L+ L + V VN +DK G
Sbjct: 62 PSNYVAEQAESIDNPLHEAAK-RGN-----------LSWLRECLDNRVGVNGLDKAGSTA 109
Query: 214 ILWAASAGSSDAILALV-KAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDV 272
+ WA G D + L + + +K G TALH AA +G+ + ++ L+ GA D+
Sbjct: 110 LYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLA-KGARTDL 168
Query: 273 IDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
+ A A A A + +
Sbjct: 169 RNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDYL 208
Score = 143 bits (364), Expect = 7e-42
Identities = 35/227 (15%), Positives = 67/227 (29%), Gaps = 20/227 (8%)
Query: 66 KTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANV 125
+ + + + D I + T G T L V
Sbjct: 13 QVKVFRALYTFEPRTPDELYIEEGD-IIYITDMSDTNWWKGTSKG-----RTGLIPSNYV 66
Query: 126 NSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGND 185
Q + +H A G + L L + D G +++A GH
Sbjct: 67 AEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHG-GH------- 118
Query: 186 VRVGLAVLKVLL-HHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGL 244
++++L N+++N +K G + AA G +D + L+ GA + + +
Sbjct: 119 ----KDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKK 174
Query: 245 TALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHAD 291
A A + L+ A + + + H
Sbjct: 175 LAFDMATNAACASLLKKKQGT-DAVRTLSNAEDYLDDEDSDLEHHHH 220
Score = 90.8 bits (226), Expect = 9e-22
Identities = 28/149 (18%), Positives = 50/149 (33%), Gaps = 2/149 (1%)
Query: 30 EGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAP 89
L AA++G + ++ L +R V D+ T L++ E +
Sbjct: 72 SIDNPLHEAAKRGNLSWLRECLDNRVG-VNGLDKAGSTALYWACHGGHKDIVEMLFTQPN 130
Query: 90 DLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALE 149
+ ++ G T LH AA G ++ LLA A + ++ E AT L+
Sbjct: 131 IELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLK 190
Query: 150 TVLSAGAEPSTPDIHGGYPIHYASQMCGH 178
A + + + H
Sbjct: 191 KKQGTDAVRTLSNAEDYLDDEDSDL-EHH 218
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Length = 285
Score = 156 bits (397), Expect = 4e-46
Identities = 35/277 (12%), Positives = 85/277 (30%), Gaps = 28/277 (10%)
Query: 38 AAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIEAADE 97
K ++K+ L+S + D + +Y + + T+L +
Sbjct: 6 RINTWKSKQLKSFLSS--KDTFKADVHGHSASYYAIADNNVRLVCTLLNAGAL-KNLLE- 61
Query: 98 DGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAE 157
PLH AA + ++ LL + + D++G++ +++A G ++ ++ +
Sbjct: 62 -NEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWR 120
Query: 158 PSTPDIHGGY-PIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILW 216
G ++A + ++++ L I
Sbjct: 121 LMFYGKTGWKTSFYHAVML-ND-----------VSIVSYFLSEI-PSTFDLAILLSCIHI 167
Query: 217 AASAGSSDAILALVKAGANVEAHDKDGLT-ALHCAASRGHRECLETLITLCGADVDVIDT 275
G D ++ L+ + ++ + A E L+ L ++
Sbjct: 168 TIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFK-YDINIY---- 222
Query: 276 NGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
SA V L A+ ++++
Sbjct: 223 ---SANLENVLLDDAEIAKMIIEKHVEYKSDSYTKDL 256
Score = 113 bits (285), Expect = 1e-29
Identities = 29/227 (12%), Positives = 73/227 (32%), Gaps = 24/227 (10%)
Query: 27 NTMEGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILE 86
N +E L AA VK +L S + + D T L+Y ++ + + ++
Sbjct: 58 NLLENEFPLHQAATLEDTKIVKILLFSGLD-DSQFDDKGNTALYYAVDSGNMQTVKLFVK 116
Query: 87 VAPDLIEAADEDGY-TPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEV 145
+ + G+ T + A + +V ++ L+ + S +H G V
Sbjct: 117 KNWR-LMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTF-DLAILLSCIHITIKNGHV 174
Query: 146 EALETVLSAGAEPSTPDIHGGYP-IHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVN 204
+ + +L +T + P I A + +L+ L +++++
Sbjct: 175 DMMILLLDYMTSTNTNNSLLFIPDIKLAID-NKD-----------IEMLQALFKYDINIY 222
Query: 205 VVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAA 251
+ ++ +++ ++ +
Sbjct: 223 SANL-------ENVLLDDAEIAKMIIEKHVEYKSDSYTKDLDIVKNN 262
Score = 96.4 bits (241), Expect = 2e-23
Identities = 26/208 (12%), Positives = 62/208 (29%), Gaps = 24/208 (11%)
Query: 30 EGATSLMYAAQQGKDAEVKAILASRPNAVRERDRT-RKTVLHYCAENTILSCAETILEVA 88
+G T+L YA G VK + + +T KT ++ +S L
Sbjct: 94 KGNTALYYAVDSGNMQTVKLFVKKNWR-LMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEI 152
Query: 89 PDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVV-HWATVCGEVEA 147
P + +H+ G+V ++ LL + + N+ ++ A ++E
Sbjct: 153 PS--TFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEM 210
Query: 148 LETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVD 207
L+ + + + + + K+++ +V+
Sbjct: 211 LQALFKYDINIYSAN-------LENVLL-DD-----------AEIAKMIIEKHVEYKSDS 251
Query: 208 KDGRQPILWAASAGSSDAILALVKAGAN 235
I+ + ++
Sbjct: 252 YTKDLDIVKNNKLDEIISKNKELRLMYV 279
Score = 79.9 bits (198), Expect = 2e-17
Identities = 18/169 (10%), Positives = 49/169 (28%), Gaps = 12/169 (7%)
Query: 22 DKKVHNTMEGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCA 81
+ TS +A + V L+ + +H +N +
Sbjct: 120 RLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSE--IPSTFDLAILLSCIHITIKNGHVDMM 177
Query: 82 ETILEVAPDLIEAADEDGYTP-LHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWAT 140
+L+ + + P + LA ++ ++ L + N+ S +
Sbjct: 178 ILLLDYMTS-TNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYSAN-------LENV 229
Query: 141 VCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVG 189
+ + E + ++ E + I ++ ++R+
Sbjct: 230 LLDDAEIAKMIIEKHVEYKSDSYTKDLDIVKNNK-LDEIISKNKELRLM 277
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein
binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Length = 192
Score = 146 bits (372), Expect = 2e-43
Identities = 49/204 (24%), Positives = 85/204 (41%), Gaps = 19/204 (9%)
Query: 60 ERDRTRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLL 119
D+ + V E +I + L D TPL +A + G I L+
Sbjct: 3 HMDKNGEIVEKIKDEKSINQNLDF-------LRNYRDSYNRTPLMVACMLGMENAIDKLV 55
Query: 120 AHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHA 179
+ + +D EG + + WA + E +LS G+ +T D G P+ ++ G+
Sbjct: 56 ENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSII-FGY- 113
Query: 180 SEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAH 239
+ LL H +VN + +G P++ A+ G S+ + L++ GA++ A
Sbjct: 114 ----------SEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISAR 163
Query: 240 DKDGLTALHCAASRGHRECLETLI 263
D GLTA A G +E ++
Sbjct: 164 DLTGLTAEASARIFGRQEVIKIFT 187
Score = 122 bits (308), Expect = 7e-34
Identities = 38/187 (20%), Positives = 66/187 (35%), Gaps = 19/187 (10%)
Query: 126 NSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGND 185
+ D G V + L+ + + D + P+ A G
Sbjct: 2 SHMDKNGEIVEKIKDEKSINQNLDFLRNYR------DSYNRTPLMVACM-LGM------- 47
Query: 186 VRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLT 245
+ L+ + + D +G ++WA L+ G+NV D G T
Sbjct: 48 ----ENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKT 103
Query: 246 ALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNR 305
L + G+ E L+ GA+V+ + G + L A G ++ LL+ GA +
Sbjct: 104 PLMWSIIFGYSEMSYFLL-EHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISA 162
Query: 306 QDRKGRT 312
+D G T
Sbjct: 163 RDLTGLT 169
Score = 75.1 bits (186), Expect = 2e-16
Identities = 28/127 (22%), Positives = 59/127 (46%), Gaps = 2/127 (1%)
Query: 30 EGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAP 89
EG+T+L++A + + + +L+ N V +D + KT L + + +LE
Sbjct: 67 EGSTALIWAVKNNRLGIAEKLLSKGSN-VNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGA 125
Query: 90 DLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALE 149
+ + + +G TPL +A+ G ++ LL A+++++D G + A + G E ++
Sbjct: 126 N-VNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIK 184
Query: 150 TVLSAGA 156
Sbjct: 185 IFTEVRR 191
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6
ATPase, P-benzoyl-L-phenylalanine, PBPA, amber
suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A
2dwz_A* 1tr4_A 1uoh_A 1qym_A
Length = 231
Score = 146 bits (370), Expect = 8e-43
Identities = 54/239 (22%), Positives = 91/239 (38%), Gaps = 16/239 (6%)
Query: 66 KTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANV 125
+ + + E IL D+D T LH A AG+ ++ LL V
Sbjct: 8 IMICNLAYSGKLDELKERILADKSL-ATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV 66
Query: 126 NSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGND 185
N +D+ G S +H A G E ++ +L GA + + +G P+HYA+
Sbjct: 67 NDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAAS----------- 115
Query: 186 VRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLT 245
+ + +LL + + D + AA+ G+ + L+ A+ D +G T
Sbjct: 116 -KNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNT 174
Query: 246 ALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPN 304
LH A E + L+T GA + + + + L A G L G +
Sbjct: 175 PLHLACDEERVEEAKFLVTQ-GASIYIENKEEKTPLQVAK--GGLGLILKRLAEGEEAS 230
Score = 134 bits (339), Expect = 3e-38
Identities = 53/215 (24%), Positives = 95/215 (44%), Gaps = 13/215 (6%)
Query: 98 DGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAE 157
+LA L +LA ++ D + + +HWA G E +E +L G
Sbjct: 6 SNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP 65
Query: 158 PSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWA 217
+ D G P+H A+ ++K LL VN V+++G P+ +A
Sbjct: 66 VNDKDDAGWSPLHIAASAG------------XDEIVKALLVKGAHVNAVNQNGCTPLHYA 113
Query: 218 ASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNG 277
AS + + L++ GAN +A D TA+H AA++G+ + + L+ A ++ DT G
Sbjct: 114 ASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLF-YKASTNIQDTEG 172
Query: 278 CSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
+ L A + L+ GA+ ++++ +T
Sbjct: 173 NTPLHLACDEERVEEAKFLVTQGASIYIENKEEKT 207
Score = 134 bits (338), Expect = 5e-38
Identities = 59/247 (23%), Positives = 104/247 (42%), Gaps = 19/247 (7%)
Query: 29 MEGATS---LMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETIL 85
MEG S + A GK E+K + + + D+ +T LH+ E +L
Sbjct: 1 MEGCVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLL 60
Query: 86 EVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEV 145
++ + D+ G++PLH+AA AG ++ LL A+VN+ + G + +H+A
Sbjct: 61 QLGVP-VNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRH 119
Query: 146 EALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNV 205
E +L GA P D + +H A+ G+ L ++ +LL + N+
Sbjct: 120 EIAVMLLEGGANPDAKDHYDATAMHRAAA-KGN-----------LKMVHILLFYKASTNI 167
Query: 206 VDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITL 265
D +G P+ A + LV GA++ +K+ T L A G + +
Sbjct: 168 QDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAK--GGLGLILKRL-A 224
Query: 266 CGADVDV 272
G + +
Sbjct: 225 EGEEASM 231
Score = 35.6 bits (82), Expect = 0.012
Identities = 6/38 (15%), Positives = 12/38 (31%)
Query: 275 TNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
+ A + + +L + R D+ RT
Sbjct: 5 VSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRT 42
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC,
rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens}
PDB: 3uxg_A
Length = 172
Score = 143 bits (363), Expect = 2e-42
Identities = 40/180 (22%), Positives = 73/180 (40%), Gaps = 14/180 (7%)
Query: 99 GYTPLHLAAIAGNVPLIHTLLAHRAN-VNSQDNEGHSVVHWATVCGEVEALETVLSAGAE 157
+H A G + + L N VN D G + + WA+ GE+E + +L GA+
Sbjct: 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD 61
Query: 158 PSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWA 217
P + AS G+ ++ +LL +VD+N+ D +G P+L+A
Sbjct: 62 PHILAKERESALSLAST-GGY-----------TDIVGLLLERDVDINIYDWNGGTPLLYA 109
Query: 218 ASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNG 277
+ AL+ GA++ G T + A + G+R+ + + + +
Sbjct: 110 VRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENH-ILKLFQSNLVP 168
Score = 120 bits (303), Expect = 2e-33
Identities = 39/149 (26%), Positives = 64/149 (42%), Gaps = 14/149 (9%)
Query: 165 GGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVD-VNVVDKDGRQPILWAASAGSS 223
IH + G L LK L + VN D+ G P++WA++ G
Sbjct: 2 DSLSIHQLAAQ-GE-----------LDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEI 49
Query: 224 DAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFY 283
+ + L++ GA+ K+ +AL A++ G+ + + L+ D+++ D NG + L Y
Sbjct: 50 ETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLE-RDVDINIYDWNGGTPLLY 108
Query: 284 AVTLGHADATTLLLQYGATPNRQDRKGRT 312
AV H LL GA + G T
Sbjct: 109 AVRGNHVKCVEALLARGADLTTEADSGYT 137
Score = 82.5 bits (205), Expect = 3e-19
Identities = 28/139 (20%), Positives = 58/139 (41%), Gaps = 2/139 (1%)
Query: 30 EGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAP 89
G T L++A+ G+ V+ +L + + R++ L + +LE
Sbjct: 35 RGFTPLIWASAFGEIETVRFLLEWGAD-PHILAKERESALSLASTGGYTDIVGLLLERDV 93
Query: 90 DLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALE 149
D I D +G TPL A +V + LLA A++ ++ + G++ + A G + +
Sbjct: 94 D-INIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQ 152
Query: 150 TVLSAGAEPSTPDIHGGYP 168
+ + + ++ P
Sbjct: 153 VIENHILKLFQSNLVPADP 171
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A
{Enterococcus faecalis}
Length = 201
Score = 141 bits (358), Expect = 3e-41
Identities = 45/211 (21%), Positives = 90/211 (42%), Gaps = 20/211 (9%)
Query: 96 DEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAG 155
+ L A + L V+ D EG++ ++ A ++E + ++ G
Sbjct: 3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRG 62
Query: 156 AEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLL-HHNVDVNVVDKDGRQPI 214
A+ + + P YA G +L +L H D+N ++ G +
Sbjct: 63 ADINLQNSISDSPYLYAGA-QGR-----------TEILAYMLKHATPDLNKHNRYGGNAL 110
Query: 215 LWAASAGSSDAILALVKAG-ANVEAHDKDGLTALHCAA-----SRGHRECLETLITLCGA 268
+ AA G D + L++ G +++ + G TAL A ++ +++ ++ L+ GA
Sbjct: 111 IPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLME-NGA 169
Query: 269 DVDVIDTNGCSALFYAVTLGHADATTLLLQY 299
D + D +G +A+ YA G+ + + +L QY
Sbjct: 170 DQSIKDNSGRTAMDYANQKGYTEISKILAQY 200
Score = 137 bits (349), Expect = 7e-40
Identities = 41/210 (19%), Positives = 84/210 (40%), Gaps = 20/210 (9%)
Query: 61 RDRTRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLA 120
+ +L + E + + ++ D +G TPL++A ++ + L+
Sbjct: 2 KTYEVGALLEAANQRDTKKVKEILQDTTYQ-VDEVDTEGNTPLNIAVHNNDIEIAKALID 60
Query: 121 HRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGA-EPSTPDIHGGYPIHYASQMCGHA 179
A++N Q++ S +A G E L +L + + + +GG + A++ GH
Sbjct: 61 RGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAE-KGH- 118
Query: 180 SEMGNDVRVGLAVLKVLL-HHNVDVNVVDKDGRQPILWAASAGSS-----DAILALVKAG 233
+ +K+LL D++ + G ++ A D + L++ G
Sbjct: 119 ----------IDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENG 168
Query: 234 ANVEAHDKDGLTALHCAASRGHRECLETLI 263
A+ D G TA+ A +G+ E + L
Sbjct: 169 ADQSIKDNSGRTAMDYANQKGYTEISKILA 198
Score = 113 bits (285), Expect = 2e-30
Identities = 34/152 (22%), Positives = 58/152 (38%), Gaps = 13/152 (8%)
Query: 162 DIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAG 221
G + A+Q V ++L V+ VD +G P+ A
Sbjct: 3 TYEVGALLEAANQR-DT-----------KKVKEILQDTTYQVDEVDTEGNTPLNIAVHNN 50
Query: 222 SSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSAL 281
+ AL+ GA++ + + A ++G E L ++ D++ + G +AL
Sbjct: 51 DIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNAL 110
Query: 282 FYAVTLGHADATTLLLQYG-ATPNRQDRKGRT 312
A GH D LLL+ G + Q+ G T
Sbjct: 111 IPAAEKGHIDNVKLLLEDGREDIDFQNDFGYT 142
Score = 73.6 bits (182), Expect = 8e-16
Identities = 25/128 (19%), Positives = 52/128 (40%), Gaps = 5/128 (3%)
Query: 31 GATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPD 90
+ +YA QG+ + +L + + +R L AE + + +LE +
Sbjct: 72 SDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGRE 131
Query: 91 LIEAADEDGYTPLHLAAIAGNVPLIHT-----LLAHRANVNSQDNEGHSVVHWATVCGEV 145
I+ ++ GYT L A ++ L+ + A+ + +DN G + + +A G
Sbjct: 132 DIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYT 191
Query: 146 EALETVLS 153
E + +
Sbjct: 192 EISKILAQ 199
Score = 51.7 bits (125), Expect = 4e-08
Identities = 21/111 (18%), Positives = 38/111 (34%), Gaps = 9/111 (8%)
Query: 17 ENGSFDKKVHNTMEGATSLMYAAQQGKDAEVKAILASRPNA-VRERDRTRKTVLHY---- 71
++ + D HN G +L+ AA++G VK +L + ++ T L
Sbjct: 93 KHATPDLNKHNR-YGGNALIPAAEKGHIDNVK-LLLEDGREDIDFQNDFGYTALIEAVGL 150
Query: 72 -CAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAH 121
+ ++E D D G T + A G + L +
Sbjct: 151 REGNQLYQDIVKLLMENGAD-QSIKDNSGRTAMDYANQKGYTEISKILAQY 200
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium,
SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo
sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Length = 167
Score = 140 bits (355), Expect = 4e-41
Identities = 37/177 (20%), Positives = 70/177 (39%), Gaps = 13/177 (7%)
Query: 98 DGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAE 157
+H A G + + T + +N D EG + + WA G++ +E +L GA+
Sbjct: 2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD 61
Query: 158 PSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWA 217
P + A G+ ++K+LL VDVN D +G P+L+A
Sbjct: 62 PQLLGKGRESALSLACS-KGY-----------TDIVKMLLDCGVDVNEYDWNGGTPLLYA 109
Query: 218 ASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVID 274
+ L+++GA+ G ++ A + G+R + + + +
Sbjct: 110 VHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESH-LLKLLQNI 165
Score = 124 bits (313), Expect = 6e-35
Identities = 39/149 (26%), Positives = 66/149 (44%), Gaps = 13/149 (8%)
Query: 164 HGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSS 223
+H + G + L + +N D++G P++WAA+ G
Sbjct: 2 ANSLSVHQLAAQ-GE-----------MLYLATRIEQENVINHTDEEGFTPLMWAAAHGQI 49
Query: 224 DAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFY 283
+ L++ GA+ + K +AL A S+G+ + ++ L+ CG DV+ D NG + L Y
Sbjct: 50 AVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLD-CGVDVNEYDWNGGTPLLY 108
Query: 284 AVTLGHADATTLLLQYGATPNRQDRKGRT 312
AV H +LL+ GA P + G
Sbjct: 109 AVHGNHVKCVKMLLESGADPTIETDSGYN 137
Score = 85.5 bits (213), Expect = 2e-20
Identities = 34/180 (18%), Positives = 64/180 (35%), Gaps = 47/180 (26%)
Query: 30 EGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAP 89
EG T LM+AA G ++ E +L+
Sbjct: 35 EGFTPLMWAAAHG---------------------------Q-------IAVVEFLLQNGA 60
Query: 90 DLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALE 149
D + + + L LA G ++ LL +VN D G + + +A V+ ++
Sbjct: 61 D-PQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVK 119
Query: 150 TVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKD 209
+L +GA+P+ G + A + G+ +V +V+ H + + K+
Sbjct: 120 MLLESGADPTIETDSGYNSMDLAVAL-GY-----------RSVQQVIESHLLKLLQNIKE 167
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch,
ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB:
3ixe_A 2kbx_A
Length = 179
Score = 140 bits (355), Expect = 4e-41
Identities = 40/181 (22%), Positives = 70/181 (38%), Gaps = 14/181 (7%)
Query: 95 ADEDGYTPLHLAAIAGNVPLIHTLLAHRAN-VNSQDNEGHSVVHWATVCGEVEALETVLS 153
+ + GN + L + N +N D+ G S +HWA G +E ++
Sbjct: 1 GSPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIM 60
Query: 154 AGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQP 213
GA + + P+H A+ GH +++ LL + D+N V++ G P
Sbjct: 61 RGARINVMNRGDDTPLHLAASH-GH-----------RDIVQKLLQYKADINAVNEHGNVP 108
Query: 214 ILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVI 273
+ +A G LV GA V +K G + A + E + G +++ I
Sbjct: 109 LHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKM-GQNLNRI 167
Query: 274 D 274
Sbjct: 168 P 168
Score = 119 bits (302), Expect = 3e-33
Identities = 36/152 (23%), Positives = 62/152 (40%), Gaps = 14/152 (9%)
Query: 162 DIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLL-HHNVDVNVVDKDGRQPILWAASA 220
I + G+ +++ L + D+N D G P+ WA
Sbjct: 2 SPEFMDDIFTQCR-EGN-----------AVAVRLWLDNTENDLNQGDDHGFSPLHWACRE 49
Query: 221 GSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSA 280
G S + L+ GA + ++ T LH AAS GHR+ ++ L+ AD++ ++ +G
Sbjct: 50 GRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQ-YKADINAVNEHGNVP 108
Query: 281 LFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
L YA G L+ GA + ++ G
Sbjct: 109 LHYACFWGQDQVAEDLVANGALVSICNKYGEM 140
Score = 62.8 bits (154), Expect = 4e-12
Identities = 25/137 (18%), Positives = 36/137 (26%), Gaps = 35/137 (25%)
Query: 28 TMEGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEV 87
T L AA G V+ +L + +
Sbjct: 69 NRGDDTPLHLAASHGHRDIVQKLLQYKAD------------------------------- 97
Query: 88 APDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEA 147
I A +E G PLH A G + L+A+ A V+ + G V A
Sbjct: 98 ----INAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELL 153
Query: 148 LETVLSAGAEPSTPDIH 164
E G +
Sbjct: 154 RERAEKMGQNLNRIPYK 170
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor,
cytoplasm, phosphorylation, P53 binding protein, ANK
repeat, SH3 domain; 2.10A {Homo sapiens}
Length = 229
Score = 139 bits (352), Expect = 4e-40
Identities = 40/205 (19%), Positives = 62/205 (30%), Gaps = 15/205 (7%)
Query: 55 PNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPL 114
P R +L A L + ++ D +E+G T LH A N +
Sbjct: 11 PRKARRARLNPLVLLLDAALTGELEVVQQAVKEMND-PSQPNEEGITALHNAICGANYSI 69
Query: 115 IHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGY-PIHYAS 173
+ L+ ANVNS D+ G + +H A C + ++ GA + G
Sbjct: 70 VDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCD 129
Query: 174 QM-CGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKA 232
G+ L + +++ LW SA D +
Sbjct: 130 PYREGY-----------ADCATYLADVEQSMGLMNSGAVYA-LWDYSAEFGDELSFREGE 177
Query: 233 GANVEAHDKDGLTALHCAASRGHRE 257
V D T AA G
Sbjct: 178 SVTVLRRDGPEETDWWWAALHGQEG 202
Score = 122 bits (309), Expect = 1e-33
Identities = 40/204 (19%), Positives = 78/204 (38%), Gaps = 20/204 (9%)
Query: 115 IHTLLAHRANVNSQDNEGHS---VVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHY 171
+ ++L + + ++ A + GE+E ++ + +PS P+ G +H
Sbjct: 1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHN 60
Query: 172 ASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVK 231
A + +++ L+ +VN D G P+ AAS + +ALV+
Sbjct: 61 AICG-AN-----------YSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQ 108
Query: 232 AGANVEAHD-KDGLTALHCAAS--RGHRECLETLITLCGADVDVIDTNGCSALFYAVTLG 288
GA + A DG TA G+ +C L + + ++++ AL+ +
Sbjct: 109 HGAAIFATTLSDGATAFEKCDPYREGYADCATYLADV-EQSMGLMNSGAVYALWDY-SAE 166
Query: 289 HADATTLLLQYGATPNRQDRKGRT 312
D + T R+D T
Sbjct: 167 FGDELSFREGESVTVLRRDGPEET 190
Score = 116 bits (292), Expect = 2e-31
Identities = 37/206 (17%), Positives = 70/206 (33%), Gaps = 24/206 (11%)
Query: 92 IEAADEDGYTP---LHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEAL 148
A P L AA+ G + ++ + + + + EG + +H A +
Sbjct: 11 PRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIV 70
Query: 149 ETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVD- 207
+ +++AGA ++PD HG P+H A+ C + L+ H +
Sbjct: 71 DFLITAGANVNSPDSHGWTPLHCAAS-CND-----------TVICMALVQHGAAIFATTL 118
Query: 208 KDGRQPILWAASA--GSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITL 265
DG G +D L ++ + + AL ++ E
Sbjct: 119 SDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFGDELS----FR 174
Query: 266 CGADVDVI--DTNGCSALFYAVTLGH 289
G V V+ D + ++A G
Sbjct: 175 EGESVTVLRRDGPEETDWWWAALHGQ 200
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene
family, nuclear protein, phosphorylation, disease
mutation, polymorphism; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.211.1.1 PDB: 4a63_B
Length = 239
Score = 138 bits (351), Expect = 7e-40
Identities = 42/218 (19%), Positives = 79/218 (36%), Gaps = 20/218 (9%)
Query: 96 DEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAG 155
+ G L +AH V + +++ +++ GE + ++ ++
Sbjct: 2 EITGQVSLPPGKRTNLRKTGSERIAHGMRVKF-NPLPLALLLDSSLEGEFDLVQRIIYEV 60
Query: 156 AEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPIL 215
+PS P+ G +H A GH ++K L+ V+VN D DG P+
Sbjct: 61 DDPSLPNDEGITALHNAVC-AGH-----------TEIVKFLVQFGVNVNAADSDGWTPLH 108
Query: 216 WAASAGSSDAILALVKAGANVEA---HDKDGLTALHCAASRGHRECLETLITLCGADVDV 272
AAS + LV++GA V A D G+ +C + L + +
Sbjct: 109 CAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYG-VQEKMGI 167
Query: 273 IDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKG 310
++ AL+ + L ++ G R+
Sbjct: 168 MNKGVIYALWDYEPQNDDE---LPMKEGDCMTIIHRED 202
Score = 121 bits (305), Expect = 5e-33
Identities = 33/228 (14%), Positives = 70/228 (30%), Gaps = 19/228 (8%)
Query: 31 GATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPD 90
G SL + +A + + +L + + I+ D
Sbjct: 5 GQVSLPPGKRTNLRKTGSERIAHGMRV--KFNPLPLALLLDSSLEGEFDLVQRIIYEVDD 62
Query: 91 LIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALET 150
+++G T LH A AG+ ++ L+ NVN+ D++G + +H A C V+ +
Sbjct: 63 -PSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKF 121
Query: 151 VLSAGAEPSTPDIHGGY---PIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVD 207
++ +GA + G+ + L + +++
Sbjct: 122 LVESGAAVFAMTYSDMQTAADKCEEME-EGY-----------TQCSQFLYGVQEKMGIMN 169
Query: 208 KDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGH 255
K LW + D + + + + A
Sbjct: 170 KGVIYA-LWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARLNDK 216
Score = 120 bits (302), Expect = 1e-32
Identities = 32/217 (14%), Positives = 67/217 (30%), Gaps = 31/217 (14%)
Query: 66 KTVLHYCAENTILSCAETILEVAPDLIEA-----ADEDGYTPLHLAAIAGNVPLIHTLLA 120
+ L + + + I + L +++ G L+ ++
Sbjct: 6 QVSLPPGKRTNLR-------KTGSERIAHGMRVKFNPLPLALLLDSSLEGEFDLVQRIIY 58
Query: 121 HRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHAS 180
+ + ++EG + +H A G E ++ ++ G + D G P+H A+ C +
Sbjct: 59 EVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAAS-CNN-- 115
Query: 181 EMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQ---PILWAASAGSSDAILALVKAGANVE 237
+ V K L+ V + Q G + L +
Sbjct: 116 ---------VQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMG 166
Query: 238 AHDKDGLTALHCAASRGHRECLETLITLCGADVDVID 274
+K + AL + E L G + +I
Sbjct: 167 IMNKGVIYALWDYEPQNDDE----LPMKEGDCMTIIH 199
Score = 109 bits (275), Expect = 1e-28
Identities = 27/150 (18%), Positives = 55/150 (36%), Gaps = 14/150 (9%)
Query: 161 PDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASA 220
P+I G + + + H + V + +L ++
Sbjct: 1 PEITGQVSLPPGKR-TNL-----------RKTGSERIAHGMRVK-FNPLPLALLLDSSLE 47
Query: 221 GSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSA 280
G D + ++ + + +G+TALH A GH E ++ L+ G +V+ D++G +
Sbjct: 48 GEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQF-GVNVNAADSDGWTP 106
Query: 281 LFYAVTLGHADATTLLLQYGATPNRQDRKG 310
L A + + L++ GA
Sbjct: 107 LHCAASCNNVQVCKFLVESGAAVFAMTYSD 136
Score = 37.6 bits (88), Expect = 0.003
Identities = 13/99 (13%), Positives = 31/99 (31%), Gaps = 13/99 (13%)
Query: 22 DKKVHNTMEGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLH-YCAEN---TI 77
++ M+ A ++G + L + ++ L Y +N
Sbjct: 130 FAMTYSDMQTAADKCEEMEEGY-TQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDELP 188
Query: 78 LSCAETIL--------EVAPDLIEAADEDGYTPLHLAAI 108
+ + + E+ D++GY P +L +
Sbjct: 189 MKEGDCMTIIHREDEDEIEWWWARLNDKEGYVPRNLLGL 227
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6,
ankyrin reapeat, ANK RE calcium channel, calcium
transport, calmodulin-binding; 1.70A {Mus musculus}
Length = 232
Score = 134 bits (340), Expect = 3e-38
Identities = 48/263 (18%), Positives = 88/263 (33%), Gaps = 47/263 (17%)
Query: 29 MEGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVA 88
M + L+ AA++ + +L V +R +T LH A L A ++E A
Sbjct: 1 MIWESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAA 60
Query: 89 PDLIE----AADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGE 144
P+L+ + +G T LH+A I NV L+ LLA A+V+++
Sbjct: 61 PELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGS------------ 108
Query: 145 VEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVN 204
P +G +P+ +A+ G ++++L+ H D+
Sbjct: 109 --------VFHYRPHNLIYYGEHPLSFAAC-VGS-----------EEIVRLLIEHGADIR 148
Query: 205 VVDKDGRQPILWAASAGSSDAILA----LVKAGANVEA------HDKDGLTALHCAASRG 254
D G + + L+ + GLT A G
Sbjct: 149 AQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEG 208
Query: 255 HRECLETLITLCGADVDVIDTNG 277
+ + L+ + +
Sbjct: 209 NIVMFQHLM-QKRKHIAAAHHHH 230
Score = 132 bits (334), Expect = 2e-37
Identities = 44/241 (18%), Positives = 80/241 (33%), Gaps = 42/241 (17%)
Query: 99 GYTPLHLAAIAGNVPLIHTLL-AHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAE 157
+PL LAA +V + LL V+ + G + +H A + +EA ++ A E
Sbjct: 3 WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPE 62
Query: 158 -----PSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKD--- 209
++ G +H A + + +++ LL V+
Sbjct: 63 LVFEPMTSELYEGQTALHIAVI-NQN-----------VNLVRALLARGASVSARATGSVF 110
Query: 210 ----------GRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRE-- 257
G P+ +AA GS + + L++ GA++ A D G T LH + ++
Sbjct: 111 HYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFA 170
Query: 258 --CLETLITLCGADVD------VIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRK 309
L+ V + G + A G+ L+Q
Sbjct: 171 CQMYNLLL-SYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKHIAAAHHH 229
Query: 310 G 310
Sbjct: 230 H 230
Score = 100 bits (252), Expect = 2e-25
Identities = 34/163 (20%), Positives = 58/163 (35%), Gaps = 30/163 (18%)
Query: 168 PIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAIL 227
P+ A++ + K+L +V+ G + AA + +A +
Sbjct: 6 PLLLAAK-ENDVQA----------LSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAM 54
Query: 228 ALVKAGANVEAH-----DKDGLTALHCAASRGHRECLETLITLCGADVDVIDTN------ 276
L++A + +G TALH A + + L+ GA V T
Sbjct: 55 VLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALL-ARGASVSARATGSVFHYR 113
Query: 277 -------GCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
G L +A +G + LL+++GA QD G T
Sbjct: 114 PHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNT 156
Score = 70.3 bits (173), Expect = 2e-14
Identities = 24/113 (21%), Positives = 44/113 (38%), Gaps = 10/113 (8%)
Query: 30 EGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEV-- 87
G L +AA G + V+ ++ + +R +D TVLH + A + +
Sbjct: 120 YGEHPLSFAACVGSEEIVRLLIEHGAD-IRAQDSLGNTVLHILILQPNKTFACQMYNLLL 178
Query: 88 -------APDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGH 133
L + G TP LA + GN+ + L+ R ++ + + H
Sbjct: 179 SYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKHIAAAHHHHH 231
Score = 65.7 bits (161), Expect = 9e-13
Identities = 15/75 (20%), Positives = 28/75 (37%), Gaps = 5/75 (6%)
Query: 243 GLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGA- 301
+ L AA + L L+ G +V G +AL A + +A +L++
Sbjct: 3 WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPE 62
Query: 302 ----TPNRQDRKGRT 312
+ +G+T
Sbjct: 63 LVFEPMTSELYEGQT 77
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin
repeat Pro ribosome display, apoptosis; 1.80A {Synthetic
source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D*
3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B*
2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Length = 169
Score = 130 bits (330), Expect = 2e-37
Identities = 54/174 (31%), Positives = 82/174 (47%), Gaps = 12/174 (6%)
Query: 90 DLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALE 149
D L AA AG + L+A+ A+VN++D G + +H A G +E +E
Sbjct: 5 HHHHHHGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVE 64
Query: 150 TVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKD 209
+L GA+ + D G P+ A+ GH L +++VLL + DVN D +
Sbjct: 65 VLLKNGADVNAVDHAGMTPLRLAALF-GH-----------LEIVEVLLKNGADVNANDME 112
Query: 210 GRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLI 263
G P+ AA G + + L+K GA+V A DK G TA + G+ + E L
Sbjct: 113 GHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 113 bits (285), Expect = 8e-31
Identities = 48/145 (33%), Positives = 71/145 (48%), Gaps = 13/145 (8%)
Query: 168 PIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAIL 227
+ A++ G +++L+ + DVN D G P+ AA G + +
Sbjct: 17 KLLEAAR-AGR-----------DDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVE 64
Query: 228 ALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTL 287
L+K GA+V A D G+T L AA GH E +E L+ GADV+ D G + L A
Sbjct: 65 VLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLK-NGADVNANDMEGHTPLHLAAMF 123
Query: 288 GHADATTLLLQYGATPNRQDRKGRT 312
GH + +LL+ GA N QD+ G+T
Sbjct: 124 GHLEIVEVLLKNGADVNAQDKFGKT 148
Score = 77.8 bits (193), Expect = 1e-17
Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Query: 233 GANVE-AHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHAD 291
G++ H D L AA G + + L+ GADV+ D +G + L A GH +
Sbjct: 3 GSHHHHHHGSDLGKKLLEAARAGRDDEVRILMA-NGADVNAEDASGWTPLHLAAFNGHLE 61
Query: 292 ATTLLLQYGATPNRQDRKGRT 312
+LL+ GA N D G T
Sbjct: 62 IVEVLLKNGADVNAVDHAGMT 82
Score = 52.4 bits (127), Expect = 1e-08
Identities = 26/92 (28%), Positives = 36/92 (39%), Gaps = 2/92 (2%)
Query: 30 EGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAP 89
G T L AA G V+ +L + + V D T LH A L E +L+
Sbjct: 79 AGMTPLRLAALFGHLEIVEVLLKNGAD-VNANDMEGHTPLHLAAMFGHLEIVEVLLKNGA 137
Query: 90 DLIEAADEDGYTPLHLAAIAGNVPLIHTLLAH 121
D + A D+ G T ++ GN L L
Sbjct: 138 D-VNAQDKFGKTAFDISIDNGNEDLAEILQKL 168
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats,
cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP:
d.211.1.1
Length = 327
Score = 134 bits (337), Expect = 5e-37
Identities = 41/262 (15%), Positives = 86/262 (32%), Gaps = 10/262 (3%)
Query: 33 TSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCA-ENTILSCAETILEVAPDL 91
+ + + E+ L + + + + + ++ + + +L
Sbjct: 64 EAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNL 123
Query: 92 IEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWA---TVCGEVEAL 148
DE G TPLH N+ L+ L+ H +N DN G S + A +
Sbjct: 124 NIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTF 183
Query: 149 ETVLSAGAEP-STPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVD 207
E +L D +H+ G ++ ++
Sbjct: 184 EALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSG 243
Query: 208 KDGRQPILWAASAGSSDAILALVK----AGANVEAHDKDGLTALHCAASRGHRECLETLI 263
+ ++ + D+IL + + A D +G T L+ AA G+ ++ L+
Sbjct: 244 TNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALL 303
Query: 264 TLCGADVDVIDTNGCSALFYAV 285
GAD + + +G + +
Sbjct: 304 DY-GADPFIANKSGLRPVDFGA 324
Score = 91.2 bits (226), Expect = 3e-21
Identities = 32/225 (14%), Positives = 62/225 (27%), Gaps = 33/225 (14%)
Query: 30 EGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENT---ILSCAETILE 86
G T L + VK ++ N D ++ L ++ E +L+
Sbjct: 130 HGNTPLHWLTSIANLELVKHLVKHGSN-RLYGDNMGESCLVKAVKSVNNYDSGTFEALLD 188
Query: 87 VAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVE 146
+ D T LH H + + ++ +
Sbjct: 189 YLYPCLILEDSMNRTILH----------------HIIITSGMTGCSAAAKYYLDI----- 227
Query: 147 ALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVV 206
+ ++ P + S + L + +N
Sbjct: 228 LMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSIL--------ENLDLKWIIANMLNAQ 279
Query: 207 DKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAA 251
D +G + AA G+ + AL+ GA+ +K GL + A
Sbjct: 280 DSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA 324
Score = 73.5 bits (180), Expect = 5e-15
Identities = 24/164 (14%), Positives = 60/164 (36%), Gaps = 18/164 (10%)
Query: 30 EGATSLMYAAQQG---KDAEVKAILASRPNAVRERDRTRKTVLHYCAENT---------- 76
G + L+ A + +A+L + D +T+LH+ +
Sbjct: 163 MGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAK 222
Query: 77 --ILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLL---AHRANVNSQDNE 131
+ I++ I++ + + + ++ L +N+QD+
Sbjct: 223 YYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSN 282
Query: 132 GHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQM 175
G + ++ A G + ++ +L GA+P + G P+ + + +
Sbjct: 283 GDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGAGL 326
Score = 43.1 bits (101), Expect = 6e-05
Identities = 13/89 (14%), Positives = 30/89 (33%), Gaps = 4/89 (4%)
Query: 22 DKKVHNTMEGATSLMYAAQQGKDAEVKAILASRPNA---VRERDRTRKTVLHYCAENTIL 78
++ + + S + + L + + +D T L+ A +
Sbjct: 237 NRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNI 296
Query: 79 SCAETILEVAPDLIEAADEDGYTPLHLAA 107
S + +L+ D A++ G P+ A
Sbjct: 297 SIVDALLDYGAD-PFIANKSGLRPVDFGA 324
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat,
chromodomain, aromatic CAGE, signal recognit particle,
protein targeting; 3.18A {Arabidopsis thaliana} PDB:
1x3q_A 2hug_A
Length = 244
Score = 130 bits (328), Expect = 2e-36
Identities = 39/247 (15%), Positives = 75/247 (30%), Gaps = 40/247 (16%)
Query: 86 EVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEV 145
EV + +G + G+ P A+V +E + A +
Sbjct: 2 EVNKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVV---SEYETPWWTAARKADE 58
Query: 146 EALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNV 205
+AL L + D +G + + + + G +++L D++
Sbjct: 59 QALS-QLLEDRDVDAVDENGRTALLFVAGL-GS-----------DKCVRLLAEAGADLDH 105
Query: 206 VD-KDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLIT 264
D + G + AA + + ALV+ GA++E D+ GLTAL A +
Sbjct: 106 RDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQ 165
Query: 265 LCGADVDVIDT----------------------NGCSALFYAVTLGHADATTLLLQYGAT 302
G + + G + D + + A
Sbjct: 166 F-GRRIGLEKVINVLEGQVFEYAEVDEIVEKRGKGKDVEYLVRWKDGGDCEWVKGVHVAE 224
Query: 303 PNRQDRK 309
+D +
Sbjct: 225 DVAKDYE 231
Score = 125 bits (315), Expect = 2e-34
Identities = 40/261 (15%), Positives = 75/261 (28%), Gaps = 33/261 (12%)
Query: 30 EGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAP 89
EGA + + G + V E +T A +LE
Sbjct: 14 EGAMEYLIEWKDGHSPSWVPSSYIAADVVSEY----ETPWWTAARKADEQALSQLLEDRD 69
Query: 90 DLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNE-GHSVVHWATVCGEVEAL 148
++A DE+G T L A G+ + L A+++ +D G + +H A E +
Sbjct: 70 --VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVV 127
Query: 149 ETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDK 208
E ++ GA+ D G + A ++ + + +
Sbjct: 128 EALVELGADIEVEDERGLTALELAREI-LK-----------TTPKGNPMQFGRRIGLEKV 175
Query: 209 DGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGA 268
+L ++ + G + + +C + A
Sbjct: 176 I---NVLEGQVFEYAE--------VDEIVEKRGKGKDVEYLVRWKDGGDCEWVKG-VHVA 223
Query: 269 DVDVIDTNGCSALFYAVTLGH 289
+ D L YAV
Sbjct: 224 EDVAKD--YEDGLEYAVAESV 242
Score = 103 bits (258), Expect = 4e-26
Identities = 33/124 (26%), Positives = 51/124 (41%), Gaps = 6/124 (4%)
Query: 190 LAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHC 249
+ DV + P AA A+ L++ +V+A D++G TAL
Sbjct: 28 SPSWVPSSYIAADVV---SEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLF 83
Query: 250 AASRGHRECLETLITLCGADVDVIDTN-GCSALFYAVTLGHADATTLLLQYGATPNRQDR 308
A G +C+ L GAD+D D G +AL A + L++ GA +D
Sbjct: 84 VAGLGSDKCVRLLAEA-GADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDE 142
Query: 309 KGRT 312
+G T
Sbjct: 143 RGLT 146
Score = 90.0 bits (224), Expect = 3e-21
Identities = 28/110 (25%), Positives = 44/110 (40%), Gaps = 6/110 (5%)
Query: 204 NVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLI 263
+ +G L G S + + A+V + T AA + + L L+
Sbjct: 9 SRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADV---VSEYETPWWTAARKADEQALSQLL 65
Query: 264 TLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRK-GRT 312
DVD +D NG +AL + LG LL + GA + +D + G T
Sbjct: 66 E--DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLT 113
Score = 29.1 bits (66), Expect = 1.5
Identities = 13/104 (12%), Positives = 23/104 (22%), Gaps = 24/104 (23%)
Query: 30 EGATSLMYAAQQGKDAEVKAIL--ASRPNA-------------------VRERDRTRKTV 68
G T+L A + K + R + E+ K V
Sbjct: 143 RGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFEYAEVDEIVEKRGKGKDV 202
Query: 69 LHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNV 112
+ C + + +D L A +
Sbjct: 203 EYLVRWKDGGDCEWVKGVHVAEDVA---KDYEDGLEYAVAESVI 243
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle
inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A
1mx2_A 1mx6_A
Length = 162
Score = 127 bits (322), Expect = 3e-36
Identities = 45/206 (21%), Positives = 74/206 (35%), Gaps = 46/206 (22%)
Query: 96 DEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAG 155
E L AA G++ + +LL + NVN+Q+ G T
Sbjct: 2 AEPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFG----------------RT----- 40
Query: 156 AEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPIL 215
+ G+ + + LL + ++ D+ G I
Sbjct: 41 ------------ALQVMKL--GN-----------PEIARRLLLRGANPDLKDRTGFAVIH 75
Query: 216 WAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDT 275
AA AG D + L++ A+V D +G LH AA GH +E L+ ++V +
Sbjct: 76 DAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNH 135
Query: 276 NGCSALFYAVTLGHADATTLLLQYGA 301
G +A A G + +L+ GA
Sbjct: 136 KGDTACDLARLYGRNEVVSLMQANGA 161
Score = 111 bits (281), Expect = 2e-30
Identities = 42/149 (28%), Positives = 64/149 (42%), Gaps = 15/149 (10%)
Query: 165 GGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSD 224
G + A+ G L L LL +NV+VN + GR L G+ +
Sbjct: 5 WGNELASAAAR-GD-----------LEQLTSLLQNNVNVNAQNGFGRTA-LQVMKLGNPE 51
Query: 225 AILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYA 284
L+ GAN + D+ G +H AA G + L+TL+ ADV++ D G L A
Sbjct: 52 IARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEF-QADVNIEDNEGNLPLHLA 110
Query: 285 VTLGHADATTLLLQYGAT-PNRQDRKGRT 312
GH L+++ A+ ++ KG T
Sbjct: 111 AKEGHLRVVEFLVKHTASNVGHRNHKGDT 139
Score = 91.3 bits (228), Expect = 1e-22
Identities = 29/107 (27%), Positives = 49/107 (45%), Gaps = 2/107 (1%)
Query: 206 VDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITL 265
+ + + AA+ G + + +L++ NV A + G TAL G+ E L+ L
Sbjct: 1 MAEPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLL-L 58
Query: 266 CGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
GA+ D+ D G + + A G D LL++ A N +D +G
Sbjct: 59 RGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNL 105
Score = 84.4 bits (210), Expect = 4e-20
Identities = 35/146 (23%), Positives = 61/146 (41%), Gaps = 4/146 (2%)
Query: 30 EGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAP 89
L AA +G ++ ++L + N V ++ +T L A +L
Sbjct: 4 PWGNELASAAARGDLEQLTSLLQNNVN-VNAQNGFGRTALQVMKLGN-PEIARRLLLRGA 61
Query: 90 DLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALE 149
+ + D G+ +H AA AG + + TLL +A+VN +DNEG+ +H A G + +E
Sbjct: 62 N-PDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVE 120
Query: 150 TVLSAGAE-PSTPDIHGGYPIHYASQ 174
++ A + G A
Sbjct: 121 FLVKHTASNVGHRNHKGDTACDLARL 146
Score = 72.8 bits (180), Expect = 7e-16
Identities = 36/128 (28%), Positives = 60/128 (46%), Gaps = 4/128 (3%)
Query: 30 EGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAP 89
G T+L + + +L N +DRT V+H A L +T+LE
Sbjct: 37 FGRTALQVMKLGNPEI-ARRLLLRGAN-PDLKDRTGFAVIHDAARAGFLDTLQTLLEFQA 94
Query: 90 DLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRA-NVNSQDNEGHSVVHWATVCGEVEAL 148
D + D +G PLHLAA G++ ++ L+ H A NV ++++G + A + G E +
Sbjct: 95 D-VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVV 153
Query: 149 ETVLSAGA 156
+ + GA
Sbjct: 154 SLMQANGA 161
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system,
signal sequence, ankyrin repeat, chromodomain, type I
turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2
k.37.1.1 PDB: 3dep_A 1x32_A
Length = 183
Score = 126 bits (319), Expect = 1e-35
Identities = 53/223 (23%), Positives = 81/223 (36%), Gaps = 51/223 (22%)
Query: 86 EVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEV 145
EV + +G + G+ P A+V S+
Sbjct: 1 EVNKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSEY---------------- 44
Query: 146 EALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNV 205
ET P A++ L LL DV+
Sbjct: 45 ---ET-----------------PWWTAARK-AD-----------EQALSQLLED-RDVDA 71
Query: 206 VDKDGRQPILWAASAGSSDAILALVKAGANVEAHD-KDGLTALHCAASRGHRECLETLIT 264
VD++GR +L+ A GS + L +AGA+++ D + GLTALH AA E +E L+
Sbjct: 72 VDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVE 131
Query: 265 LCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQD 307
L GAD++V D G +AL A + +Q+G +
Sbjct: 132 L-GADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEK 173
Score = 107 bits (270), Expect = 2e-28
Identities = 35/146 (23%), Positives = 54/146 (36%), Gaps = 18/146 (12%)
Query: 168 PIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAIL 227
+ GH + DV + P AA A+
Sbjct: 17 EYLIEWK-DGH-----------SPSWVPSSYIAADVV---SEYETPWWTAARKADEQALS 61
Query: 228 ALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTN-GCSALFYAVT 286
L++ +V+A D++G TAL A G +C+ L GAD+D D G +AL A
Sbjct: 62 QLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEA-GADLDHRDMRGGLTALHMAAG 119
Query: 287 LGHADATTLLLQYGATPNRQDRKGRT 312
+ L++ GA +D +G T
Sbjct: 120 YVRPEVVEALVELGADIEVEDERGLT 145
Score = 98.7 bits (247), Expect = 3e-25
Identities = 32/211 (15%), Positives = 57/211 (27%), Gaps = 50/211 (23%)
Query: 30 EGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAP 89
EGA + + G + V T A +LE
Sbjct: 13 EGAMEYLIEWKDGHSPSWVPSSYIAAD-VVSEYE---TPWWTAARKADEQALSQLLEDRD 68
Query: 90 DLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALE 149
++A DE+G T L A G+ + L A+++ +D G
Sbjct: 69 --VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRG----------------- 109
Query: 150 TVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKD 209
G +H A+ V++ L+ D+ V D+
Sbjct: 110 ---------------GLTALHMAAG-YVR-----------PEVVEALVELGADIEVEDER 142
Query: 210 GRQPILWAASAGSSDAILALVKAGANVEAHD 240
G + A + ++ G +
Sbjct: 143 GLTALELAREILKTTPKGNPMQFGRRIGLEK 173
Score = 94.1 bits (235), Expect = 2e-23
Identities = 28/111 (25%), Positives = 44/111 (39%), Gaps = 6/111 (5%)
Query: 203 VNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETL 262
+ +G L G S + + A+V + T AA + + L L
Sbjct: 7 GSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADV---VSEYETPWWTAARKADEQALSQL 63
Query: 263 ITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRK-GRT 312
+ DVD +D NG +AL + LG LL + GA + +D + G T
Sbjct: 64 LE--DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLT 112
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein
structure initiati midwest center F or structural
genomics, MCSG; 1.77A {Leptotrichia buccalis}
Length = 186
Score = 125 bits (316), Expect = 2e-35
Identities = 28/189 (14%), Positives = 56/189 (29%), Gaps = 17/189 (8%)
Query: 98 DGYTPLHLAAIAGNVPLIHTLLAHRANV---NSQDNEGHSVVHWATVCGEVEALETVLSA 154
Y + AA+ G L + N + V+ + +++
Sbjct: 5 SEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINK 64
Query: 155 GAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPI 214
GA+ + G Q G+ D+ + K+ L D+ + K + +
Sbjct: 65 GADIKSRTKEGTTLFFPLFQGGGN------DITGTTELCKIFLEKGADITALYKPYKIVV 118
Query: 215 LWAASAGSSDAI-------LALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCG 267
D L ++G + DK GLTAL L+ +
Sbjct: 119 FKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDY-I 177
Query: 268 ADVDVIDTN 276
++ + +
Sbjct: 178 KKYNLKENS 186
Score = 116 bits (293), Expect = 6e-32
Identities = 28/193 (14%), Positives = 56/193 (29%), Gaps = 21/193 (10%)
Query: 127 SQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDV 186
S + V A + G E + G E + I + N+
Sbjct: 1 SNAMSEYRTVSAAAMLGTYEDFLELFEKGYEDK--ESVLKSNIL-------YDVLRNNND 51
Query: 187 RVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILA------LVKAGANVEAHD 240
+ L++ D+ K+G G +D ++ GA++ A
Sbjct: 52 EARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALY 111
Query: 241 KDGLTALHCAASRGHRECLET------LITLCGADVDVIDTNGCSALFYAVTLGHADATT 294
K + + E + + G + + D G +AL + A
Sbjct: 112 KPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALK 171
Query: 295 LLLQYGATPNRQD 307
++ Y N ++
Sbjct: 172 MMEDYIKKYNLKE 184
Score = 103 bits (259), Expect = 5e-27
Identities = 25/228 (10%), Positives = 54/228 (23%), Gaps = 55/228 (24%)
Query: 27 NTMEGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILE 86
N M ++ AA G + + + + +L+ N + E +
Sbjct: 2 NAMSEYRTVSAAAMLGTYEDFLELFEK--GYEDKESVLKSNILYDVLRN---NNDEARYK 56
Query: 87 VAPDLIE------AADEDGYTPLHLAA------IAGNVPLIHTLLAHRANVNSQDNEGHS 134
++ LI + ++G T I G L L A++ +
Sbjct: 57 ISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKI 116
Query: 135 VVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLK 194
VV V+ E +
Sbjct: 117 VVFKNIFNYFVDENEMI--------------------------------------PLYKL 138
Query: 195 VLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKD 242
+ + + + DK G + + A+ + +
Sbjct: 139 IFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLKENS 186
Score = 93.6 bits (233), Expect = 3e-23
Identities = 23/153 (15%), Positives = 45/153 (29%), Gaps = 26/153 (16%)
Query: 178 HASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAA-----SAGSSDAILALVKA 232
A+ +G L + + + IL+ + L+
Sbjct: 12 AAAMLGT-----YEDFLELFEKGYEDK--ESVLKSNILYDVLRNNNDEARYKISMFLINK 64
Query: 233 GANVEAHDKDGLTALHCAASRGHR------ECLETLITLCGADVDVIDTNGCSALFYAVT 286
GA++++ K+G T G E + + GAD+ + +F +
Sbjct: 65 GADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEK-GADITALYKPYKIVVFKNIF 123
Query: 287 LGHADAT-------TLLLQYGATPNRQDRKGRT 312
D + Q G +D+ G T
Sbjct: 124 NYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLT 156
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Length = 156
Score = 119 bits (302), Expect = 2e-33
Identities = 41/200 (20%), Positives = 61/200 (30%), Gaps = 49/200 (24%)
Query: 99 GYTPLHLAAIAGNVPLIHTLL-AHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAE 157
L AA G+V + LL + ++ + G +
Sbjct: 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKT----------------------- 38
Query: 158 PSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWA 217
+ G A+ LL NV D G P+ A
Sbjct: 39 ----------ALQVMMF--GS-----------TAIALELLKQGASPNVQDTSGTSPVHDA 75
Query: 218 ASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNG 277
A G D + LV+ GA+V D G +H A GH + L +D+ D G
Sbjct: 76 ARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAA--ESDLHRRDARG 133
Query: 278 CSALFYAVTLGHADATTLLL 297
+ L A+ G D +L
Sbjct: 134 LTPLELALQRGAQDLVDILQ 153
Score = 113 bits (285), Expect = 6e-31
Identities = 40/148 (27%), Positives = 64/148 (43%), Gaps = 14/148 (9%)
Query: 165 GGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSD 224
G + A+ G E V ++L V + +++ G+ L GS+
Sbjct: 2 AGDRLSGAAAR-GDVQE----------VRRLLHRELVHPDALNRFGKTA-LQVMMFGSTA 49
Query: 225 AILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYA 284
L L+K GA+ D G + +H AA G + L+ L+ GADV+V D G + A
Sbjct: 50 IALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVE-HGADVNVPDGTGALPIHLA 108
Query: 285 VTLGHADATTLLLQYGATPNRQDRKGRT 312
V GH + L + +R+D +G T
Sbjct: 109 VQEGHTAVVSFLAA-ESDLHRRDARGLT 135
Score = 99.0 bits (248), Expect = 1e-25
Identities = 49/233 (21%), Positives = 72/233 (30%), Gaps = 81/233 (34%)
Query: 31 GATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPD 90
L AA +G EV+ +L
Sbjct: 2 AGDRLSGAAARGDVQEVRRLLHREL-------------------------VH-------- 28
Query: 91 LIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALET 150
+A + G T L + G+ + LL A+ N QD G S VH A G ++ L+
Sbjct: 29 -PDALNRFGKTALQVMM-FGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKV 86
Query: 151 VLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDG 210
++ GA+ + PD G PIH A Q GH AV+ L D++ D G
Sbjct: 87 LVEHGADVNVPDGTGALPIHLAVQ-EGH-----------TAVVSFLAAE-SDLHRRDARG 133
Query: 211 RQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLI 263
T L A RG ++ ++ L
Sbjct: 134 L---------------------------------TPLELALQRGAQDLVDILQ 153
Score = 37.8 bits (89), Expect = 0.001
Identities = 19/92 (20%), Positives = 26/92 (28%), Gaps = 36/92 (39%)
Query: 30 EGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAP 89
GA + A Q+G V + LA+ +
Sbjct: 100 TGALPIHLAVQEGH-TAVVSFLAAESD--------------------------------- 125
Query: 90 DLIEAADEDGYTPLHLAAIAGNVPLIHTLLAH 121
+ D G TPL LA G L+ L H
Sbjct: 126 --LHRRDARGLTPLELALQRGAQDLVDILQGH 155
>1awc_B Protein (GA binding protein beta 1); complex (transcription
regulation/DNA), DNA-binding, nuclear protein, ETS
domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus
musculus} SCOP: d.211.1.1
Length = 153
Score = 119 bits (301), Expect = 2e-33
Identities = 54/199 (27%), Positives = 76/199 (38%), Gaps = 47/199 (23%)
Query: 98 DGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAE 157
D L AA AG + L+A+ A D G S
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTS----------------------- 36
Query: 158 PSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWA 217
P+H A+Q GH + +VLL V + K R P+ A
Sbjct: 37 ----------PLHLAAQ-YGH-----------FSTTEVLLRAGVSRDARTKVDRTPLHMA 74
Query: 218 ASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNG 277
AS G ++ + L+K GA+V A D +TALH A H+E +E LI GADV
Sbjct: 75 ASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLI-KYGADVHTQSKFC 133
Query: 278 CSALFYAVTLGHADATTLL 296
+A ++ G+ D +L
Sbjct: 134 KTAFDISIDNGNEDLAEIL 152
Score = 109 bits (276), Expect = 1e-29
Identities = 41/148 (27%), Positives = 65/148 (43%), Gaps = 14/148 (9%)
Query: 165 GGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSD 224
G + A++ G +++L+ + D G P+ AA G
Sbjct: 2 LGKKLLEAAR-AGQ-----------DDEVRILMANGAPFTT-DWLGTSPLHLAAQYGHFS 48
Query: 225 AILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYA 284
L++AG + +A K T LH AAS GH +E L+ GADV+ D +AL +A
Sbjct: 49 TTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLL-KHGADVNAKDMLKMTALHWA 107
Query: 285 VTLGHADATTLLLQYGATPNRQDRKGRT 312
H + LL++YGA + Q + +T
Sbjct: 108 TEHNHQEVVELLIKYGADVHTQSKFCKT 135
Score = 92.1 bits (230), Expect = 5e-23
Identities = 34/104 (32%), Positives = 47/104 (45%), Gaps = 2/104 (1%)
Query: 209 DGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGA 268
D + +L AA AG D + L+ GA D G + LH AA GH E L+ G
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGAPFTT-DWLGTSPLHLAAQYGHFSTTEVLLR-AGV 58
Query: 269 DVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
D + L A + GHA+ +LL++GA N +D T
Sbjct: 59 SRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMT 102
Score = 90.1 bits (225), Expect = 2e-22
Identities = 41/145 (28%), Positives = 66/145 (45%), Gaps = 3/145 (2%)
Query: 30 EGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAP 89
+ L+ AA+ G+D EV+ IL + A D + LH A+ S E +L
Sbjct: 1 DLGKKLLEAARAGQDDEVR-ILMAN-GAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGV 58
Query: 90 DLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALE 149
+A + TPLH+AA G+ ++ LL H A+VN++D + +HWAT E +E
Sbjct: 59 S-RDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVE 117
Query: 150 TVLSAGAEPSTPDIHGGYPIHYASQ 174
++ GA+ T +
Sbjct: 118 LLIKYGADVHTQSKFCKTAFDISID 142
Score = 74.3 bits (184), Expect = 2e-16
Identities = 27/120 (22%), Positives = 50/120 (41%), Gaps = 2/120 (1%)
Query: 30 EGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAP 89
G + L AAQ G + + +L + + R + +T LH A + E +L+
Sbjct: 33 LGTSPLHLAAQYGHFSTTEVLLRAGVS-RDARTKVDRTPLHMAASEGHANIVEVLLKHGA 91
Query: 90 DLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALE 149
D + A D T LH A + ++ L+ + A+V++Q + + G + E
Sbjct: 92 D-VNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAE 150
Score = 28.5 bits (65), Expect = 1.6
Identities = 9/47 (19%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Query: 29 MEGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAEN 75
M T+L +A + V+ ++ + V + + KT +N
Sbjct: 98 MLKMTALHWATEHNHQEVVELLIKYGAD-VHTQSKFCKTAFDISIDN 143
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate
recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo
sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A
3twq_A 3twu_A 2y0i_S*
Length = 165
Score = 118 bits (299), Expect = 6e-33
Identities = 42/169 (24%), Positives = 67/169 (39%), Gaps = 14/169 (8%)
Query: 96 DEDGYTPLHLAAIAGNVPLIHTLL-AHRANVNSQDNEGHSVVHWATVCGEVEALETVLSA 154
+ + L AA AG+V + L N + + +H+A V +E +L
Sbjct: 5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH 64
Query: 155 GAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPI 214
GA+ D G P+H A GH V ++L+ H VNV D P+
Sbjct: 65 GADVHAKDKGGLVPLHNACS-YGH-----------YEVAELLVKHGAVVNVADLWKFTPL 112
Query: 215 LWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLI 263
AA+ G + L++ GA+ ++DG T L G + + L
Sbjct: 113 HEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVK-DGDTDIQDLLR 160
Score = 113 bits (285), Expect = 7e-31
Identities = 44/152 (28%), Positives = 68/152 (44%), Gaps = 14/152 (9%)
Query: 162 DIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLL-HHNVDVNVVDKDGRQPILWAASA 220
+ + A++ G + +K L +V+ ++ P+ +AA
Sbjct: 5 NSEADRQLLEAAK-AGD-----------VETVKKLCTVQSVNCRDIEGRQSTPLHFAAGY 52
Query: 221 GSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSA 280
+ L++ GA+V A DK GL LH A S GH E E L+ GA V+V D +
Sbjct: 53 NRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKH-GAVVNVADLWKFTP 111
Query: 281 LFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
L A G + LLLQ+GA P +++R G T
Sbjct: 112 LHEAAAKGKYEICKLLLQHGADPTKKNRDGNT 143
Score = 89.4 bits (223), Expect = 6e-22
Identities = 41/145 (28%), Positives = 66/145 (45%), Gaps = 3/145 (2%)
Query: 30 EGATSLMYAAQQGKDAEVKAILASRPNA-VRERDRTRKTVLHYCAENTILSCAETILEVA 88
E L+ AA+ G VK L + + R+ + + T LH+ A +S E +L+
Sbjct: 7 EADRQLLEAAKAGDVETVK-KLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHG 65
Query: 89 PDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEAL 148
D + A D+ G PLH A G+ + L+ H A VN D + +H A G+ E
Sbjct: 66 AD-VHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEIC 124
Query: 149 ETVLSAGAEPSTPDIHGGYPIHYAS 173
+ +L GA+P+ + G P+
Sbjct: 125 KLLLQHGADPTKKNRDGNTPLDLVK 149
Score = 75.1 bits (186), Expect = 1e-16
Identities = 19/80 (23%), Positives = 32/80 (40%), Gaps = 3/80 (3%)
Query: 233 GANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADA 292
GA + + L AA G E ++ L T+ + I+ + L +A
Sbjct: 1 GAMG---NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSV 57
Query: 293 TTLLLQYGATPNRQDRKGRT 312
LLQ+GA + +D+ G
Sbjct: 58 VEYLLQHGADVHAKDKGGLV 77
Score = 26.6 bits (60), Expect = 8.6
Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 7/48 (14%)
Query: 31 GATSLMYAAQQGKDAEVKAILASR---PNAVRERDRTRKTVLHYCAEN 75
T L AA +GK E+ +L P +++R T L +
Sbjct: 108 KFTPLHEAAAKGK-YEICKLLLQHGADPT---KKNRDGNTPLDLVKDG 151
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase,
cyclin dependent kinase inhibitory protein, CDK, cell
cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A
1dc2_A 2a5e_A
Length = 156
Score = 116 bits (293), Expect = 4e-32
Identities = 40/165 (24%), Positives = 59/165 (35%), Gaps = 19/165 (11%)
Query: 94 AADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLS 153
++ E L AA G V + LL AN N+ ++ G + + G E +L
Sbjct: 7 SSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVM-MMGSARVAELLLL 65
Query: 154 AGAEPSTPDIHGG-YPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQ 212
GAEP+ D P+H A++ G L L VL ++V D GR
Sbjct: 66 HGAEPNCADPATLTRPVHDAARE-GF-----------LDTLVVLHRAGARLDVRDAWGRL 113
Query: 213 PILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRE 257
P+ A G D L A + A+ G +
Sbjct: 114 PVDLAEELGHRDVARYLRAAAGGTRGSNH-----ARIDAAEGPSD 153
Score = 110 bits (278), Expect = 6e-30
Identities = 36/162 (22%), Positives = 53/162 (32%), Gaps = 17/162 (10%)
Query: 152 LSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGR 211
+ A S + A+ G + ++ LL + N + GR
Sbjct: 1 MEPAAGSSMEP--SADWLATAAAR-GR-----------VEEVRALLEAGANPNAPNSYGR 46
Query: 212 QPILWAASAGSSDAILALVKAGANVEAHDKDGLT-ALHCAASRGHRECLETLITLCGADV 270
+P + GS+ L+ GA D LT +H AA G + L L GA +
Sbjct: 47 RP-IQVMMMGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRA-GARL 104
Query: 271 DVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
DV D G + A LGH D L +
Sbjct: 105 DVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARID 146
Score = 54.0 bits (131), Expect = 3e-09
Identities = 17/106 (16%), Positives = 28/106 (26%), Gaps = 8/106 (7%)
Query: 30 EGATSLMYAAQQGKDAEVKAILASR---PNAVRERDRTRKTVLHYCAENTILSCAETILE 86
G + V +L PN T +H A L +
Sbjct: 44 YGRRPIQVMMMGSA--RVAELLLLHGAEPNCADPATLT--RPVHDAAREGFLDTLVVLHR 99
Query: 87 VAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEG 132
++ D G P+ LA G+ + L A ++
Sbjct: 100 AGAR-LDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHAR 144
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin
repeat, signaling protein; NMR {Mus musculus} SCOP:
i.11.1.1
Length = 136
Score = 113 bits (286), Expect = 2e-31
Identities = 37/179 (20%), Positives = 54/179 (30%), Gaps = 48/179 (26%)
Query: 92 IEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETV 151
I L AA G V + LL A+ N+ + G
Sbjct: 5 IHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRR----------------- 47
Query: 152 LSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGR 211
PI G V ++LL H + N D
Sbjct: 48 ----------------PIQVMMM--GS-----------AQVAELLLLHGAEPNCADPATL 78
Query: 212 -QPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGAD 269
+P+ AA G D ++ L +AGA ++ D G + A +GHR+ L D
Sbjct: 79 TRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHA-ATGD 136
Score = 110 bits (278), Expect = 3e-30
Identities = 34/149 (22%), Positives = 50/149 (33%), Gaps = 15/149 (10%)
Query: 154 AGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQP 213
+ A+ G + ++ LL D N +++ GR+P
Sbjct: 1 GSPGIHMLGGSSDAGLATAAAR-GQ-----------VETVRQLLEAGADPNALNRFGRRP 48
Query: 214 ILWAASAGSSDAILALVKAGANVEAHDKDGLT-ALHCAASRGHRECLETLITLCGADVDV 272
+ GS+ L+ GA D LT +H AA G + L L GA +DV
Sbjct: 49 -IQVMMMGSAQVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHR-AGARLDV 106
Query: 273 IDTNGCSALFYAVTLGHADATTLLLQYGA 301
D G + A GH D L
Sbjct: 107 CDAWGRLPVDLAEEQGHRDIARYLHAATG 135
Score = 103 bits (260), Expect = 1e-27
Identities = 24/112 (21%), Positives = 46/112 (41%), Gaps = 3/112 (2%)
Query: 202 DVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLET 261
++++ + AA+ G + + L++AGA+ A ++ G + G + E
Sbjct: 4 GIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMM-MGSAQVAEL 62
Query: 262 LITLCGADVDVIDTNGC-SALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
L+ GA+ + D + A G D +L + GA + D GR
Sbjct: 63 LLLH-GAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRL 113
Score = 86.0 bits (214), Expect = 5e-21
Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 2/82 (2%)
Query: 232 AGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHAD 291
+ L AA+RG E + L+ GAD + ++ G + + +G A
Sbjct: 1 GSPGIHMLGGSSDAGLATAAARGQVETVRQLLE-AGADPNALNRFGRRPIQVMM-MGSAQ 58
Query: 292 ATTLLLQYGATPNRQDRKGRTY 313
LLL +GA PN D T
Sbjct: 59 VAELLLLHGAEPNCADPATLTR 80
Score = 76.7 bits (190), Expect = 2e-17
Identities = 26/128 (20%), Positives = 46/128 (35%), Gaps = 4/128 (3%)
Query: 30 EGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAP 89
L AA +G+ V+ +L + + +R + + + AE +L
Sbjct: 11 SSDAGLATAAARGQVETVRQLLEAGAD-PNALNRFGRRPIQVMMMGS-AQVAELLLLHGA 68
Query: 90 DLIEAADEDGYT-PLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEAL 148
+ AD T P+H AA G + + L A ++ D G V A G +
Sbjct: 69 E-PNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIA 127
Query: 149 ETVLSAGA 156
+ +A
Sbjct: 128 RYLHAATG 135
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP:
k.37.1.1
Length = 126
Score = 109 bits (275), Expect = 7e-30
Identities = 55/134 (41%), Positives = 75/134 (55%), Gaps = 13/134 (9%)
Query: 168 PIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAIL 227
P+H A++ GH L V+K+LL DVN DK+GR P+ AA G + +
Sbjct: 5 PLHLAARN-GH-----------LEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVK 52
Query: 228 ALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTL 287
L++AGA+V A DK+G T LH AA GH E ++ L+ GADV+ D NG + L A
Sbjct: 53 LLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARN 111
Query: 288 GHADATTLLLQYGA 301
GH + LLL+ GA
Sbjct: 112 GHLEVVKLLLEAGA 125
Score = 107 bits (271), Expect = 3e-29
Identities = 55/166 (33%), Positives = 80/166 (48%), Gaps = 45/166 (27%)
Query: 98 DGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAE 157
+G TPLHLAA G++ ++ LL A+VN++D G +
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRT----------------------- 37
Query: 158 PSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWA 217
P+H A++ GH L V+K+LL DVN DK+GR P+ A
Sbjct: 38 ----------PLHLAARN-GH-----------LEVVKLLLEAGADVNAKDKNGRTPLHLA 75
Query: 218 ASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLI 263
A G + + L++AGA+V A DK+G T LH AA GH E ++ L+
Sbjct: 76 ARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL 121
Score = 98.6 bits (247), Expect = 9e-26
Identities = 45/104 (43%), Positives = 62/104 (59%), Gaps = 1/104 (0%)
Query: 209 DGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGA 268
+GR P+ AA G + + L++AGA+V A DK+G T LH AA GH E ++ L+ GA
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE-AGA 59
Query: 269 DVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
DV+ D NG + L A GH + LLL+ GA N +D+ GRT
Sbjct: 60 DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRT 103
Score = 81.2 bits (202), Expect = 2e-19
Identities = 46/126 (36%), Positives = 71/126 (56%), Gaps = 2/126 (1%)
Query: 31 GATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPD 90
G T L AA+ G VK +L + + V +D+ +T LH A N L + +LE D
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 91 LIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALET 150
+ A D++G TPLHLAA G++ ++ LL A+VN++D G + +H A G +E ++
Sbjct: 61 -VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKL 119
Query: 151 VLSAGA 156
+L AGA
Sbjct: 120 LLEAGA 125
Score = 78.2 bits (194), Expect = 3e-18
Identities = 47/134 (35%), Positives = 74/134 (55%), Gaps = 13/134 (9%)
Query: 66 KTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANV 125
+T LH A N L + +LE D + A D++G TPLHLAA G++ ++ LL A+V
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 126 NSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGND 185
N++D G + +H A G +E ++ +L AGA+ + D +G P+H A++ GH
Sbjct: 62 NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN-GH------- 113
Query: 186 VRVGLAVLKVLLHH 199
L V+K+LL
Sbjct: 114 ----LEVVKLLLEA 123
>2etb_A Transient receptor potential cation channel subfamily V member 2;
TRPV2, ankyrin repeat domain, transport protein; 1.65A
{Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Length = 256
Score = 111 bits (278), Expect = 6e-29
Identities = 40/295 (13%), Positives = 75/295 (25%), Gaps = 73/295 (24%)
Query: 33 TSLMYAAQQGKDAEVKAIL-------ASRPNAVRERDRTRKTVLHYCAENTILSCAETI- 84
L +G E+ +L ++ T KT L N I
Sbjct: 4 DRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIM 63
Query: 85 --LEVAPDL----------IEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEG 132
L++ D G++ LH+A ++ + L+ + A+V+ +
Sbjct: 64 PLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGR 123
Query: 133 HSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAV 192
H T G P+ A+ V
Sbjct: 124 FFQKH--------------------QGTCFYFGELPLSLAAC-TKQ-----------WDV 151
Query: 193 LKVLLHHNV---DVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHC 249
+ LL + + D G + + A + +AL
Sbjct: 152 VTYLLENPHQPASLEATDSLGNTVLHALV-----------------MIADNSPENSALVI 194
Query: 250 AASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPN 304
G + L ++ + G + L A G + +LQ +
Sbjct: 195 HMYDGLLQMGARLCP-TVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSGA 248
Score = 77.1 bits (190), Expect = 1e-16
Identities = 37/236 (15%), Positives = 70/236 (29%), Gaps = 57/236 (24%)
Query: 31 GATSLMYAA---QQGKDAEVKAILASRPNA----------VRERDRTRKTVLHYCAENTI 77
G T LM A Q G +A + +L ++ + + LH E
Sbjct: 43 GKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRS 102
Query: 78 LSCAETILE------------VAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAH---R 122
L C + ++E G PL LAA ++ LL +
Sbjct: 103 LQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQP 162
Query: 123 ANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEM 182
A++ + D+ G++V+H + + + + G
Sbjct: 163 ASLEATDSLGNTVLHALVMIADNSPENS-----------------ALVIHMYD-GL---- 200
Query: 183 GNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEA 238
L + L + + G P+ AA G + +++ + A
Sbjct: 201 -------LQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSGAA 249
Score = 66.0 bits (161), Expect = 9e-13
Identities = 22/139 (15%), Positives = 42/139 (30%), Gaps = 20/139 (14%)
Query: 31 GATSLMYAAQQGKDAEVKAILA--SRPNAVRERDRTRKTVLHYCAENTILSCAETILEVA 88
G L AA + V +L +P ++ D TVLH
Sbjct: 136 GELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMI------------- 182
Query: 89 PDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEAL 148
A + + L + G + + L +++G + + A G++E
Sbjct: 183 -----ADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIF 237
Query: 149 ETVLSAGAEPSTPDIHGGY 167
+L + H +
Sbjct: 238 RHILQREFSGAAAHHHHHH 256
Score = 59.0 bits (143), Expect = 3e-10
Identities = 22/124 (17%), Positives = 35/124 (28%), Gaps = 21/124 (16%)
Query: 210 GRQPILWAASAGSSDAILALVK--------AGANVEAHDKDGLTALHCAA---SRGHREC 258
R + S G + + L++ + G T L A G C
Sbjct: 2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNAC 61
Query: 259 LETLI----------TLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDR 308
+ L+ L A G SAL A+ LL++ GA + +
Sbjct: 62 IMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRAC 121
Query: 309 KGRT 312
Sbjct: 122 GRFF 125
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat,
helix, extended loop, four repeat, PR ANK repeat,
disease mutation, metal-binding; 2.00A {Homo sapiens}
SCOP: k.37.1.1
Length = 137
Score = 105 bits (266), Expect = 2e-28
Identities = 37/170 (21%), Positives = 60/170 (35%), Gaps = 45/170 (26%)
Query: 94 AADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLS 153
+ G T LH+A+I G++P + LL + ++ N +D+ G +
Sbjct: 5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWT------------------- 45
Query: 154 AGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQP 213
P+H A GH L V+++LL H VN P
Sbjct: 46 --------------PLHEACN-HGH-----------LKVVELLLQHKALVNTTGYQNDSP 79
Query: 214 ILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLI 263
+ AA G D + L+ GA+ A + GL + + L
Sbjct: 80 LHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPE 129
Score = 103 bits (259), Expect = 2e-27
Identities = 33/147 (22%), Positives = 57/147 (38%), Gaps = 14/147 (9%)
Query: 155 GAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPI 214
G +P T + G +H AS G + ++ LL + D NV D G P+
Sbjct: 1 GIDPFT-NHRGETLLHIASIK-GD-----------IPSVEYLLQNGSDPNVKDHAGWTPL 47
Query: 215 LWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVID 274
A + G + L++ A V + LH AA GH + ++ L++ GA + ++
Sbjct: 48 HEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLS-YGASRNAVN 106
Query: 275 TNGCSALFYAVTLGHADATTLLLQYGA 301
G + Y L + +
Sbjct: 107 IFGLRPVDYTDDESMKSLLLLPEKNES 133
Score = 102 bits (256), Expect = 5e-27
Identities = 32/112 (28%), Positives = 49/112 (43%), Gaps = 2/112 (1%)
Query: 201 VDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLE 260
+D + G + A+ G ++ L++ G++ D G T LH A + GH + +E
Sbjct: 2 IDPFT-NHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVE 60
Query: 261 TLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
L+ A V+ S L A GH D LLL YGA+ N + G
Sbjct: 61 LLLQ-HKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLR 111
Score = 80.5 bits (200), Expect = 7e-19
Identities = 35/170 (20%), Positives = 64/170 (37%), Gaps = 46/170 (27%)
Query: 66 KTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANV 125
+T+LH + + E +L+ D D G+TPLH A G++ ++ LL H+A V
Sbjct: 11 ETLLHIASIKGDIPSVEYLLQNGSD-PNVKDHAGWTPLHEACNHGHLKVVELLLQHKALV 69
Query: 126 NSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGND 185
N+ + S P+H A++ GH
Sbjct: 70 NTTGYQNDS---------------------------------PLHDAAK-NGH------- 88
Query: 186 VRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGAN 235
+ ++K+LL + N V+ G +P+ + +L K ++
Sbjct: 89 ----VDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNESS 134
Score = 78.2 bits (194), Expect = 4e-18
Identities = 28/126 (22%), Positives = 50/126 (39%), Gaps = 2/126 (1%)
Query: 31 GATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPD 90
G T L A+ +G V+ +L + + +D T LH + L E +L+
Sbjct: 10 GETLLHIASIKGDIPSVEYLLQNGSD-PNVKDHAGWTPLHEACNHGHLKVVELLLQHKAL 68
Query: 91 LIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALET 150
+ +PLH AA G+V ++ LL++ A+ N+ + G V + L
Sbjct: 69 -VNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLL 127
Query: 151 VLSAGA 156
+
Sbjct: 128 PEKNES 133
Score = 50.9 bits (123), Expect = 3e-08
Identities = 18/97 (18%), Positives = 32/97 (32%), Gaps = 2/97 (2%)
Query: 31 GATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPD 90
G T L A G V+ +L + V + LH A+N + + +L
Sbjct: 43 GWTPLHEACNHGHLKVVELLLQHKAL-VNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGAS 101
Query: 91 LIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNS 127
A + G P+ L+ + ++ S
Sbjct: 102 -RNAVNIFGLRPVDYTDDESMKSLLLLPEKNESSSAS 137
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping,
inhibition, prote binding, actin capping, actin-binding,
cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A
2kxp_C 2myo_A
Length = 123
Score = 105 bits (264), Expect = 3e-28
Identities = 33/167 (19%), Positives = 51/167 (30%), Gaps = 45/167 (26%)
Query: 94 AADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLS 153
A G++ + +A +VN G
Sbjct: 2 PLGSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRK------------------- 42
Query: 154 AGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQP 213
P+HYA+ CG L +L+ LL D+N DK P
Sbjct: 43 --------------PLHYAAD-CGQ-----------LEILEFLLLKGADINAPDKHHITP 76
Query: 214 ILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLE 260
+L A G + L+ GA+ DGLTA ++ + L+
Sbjct: 77 LLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKALLQ 123
Score = 103 bits (260), Expect = 9e-28
Identities = 32/124 (25%), Positives = 52/124 (41%), Gaps = 13/124 (10%)
Query: 168 PIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAIL 227
+A + G L +K + DVN + GR+P+ +AA G + +
Sbjct: 10 EFMWALK-NGD-----------LDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILE 57
Query: 228 ALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTL 287
L+ GA++ A DK +T L A GH C++ L++ GAD V +G +A
Sbjct: 58 FLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLS-KGADKTVKGPDGLTAFEATDNQ 116
Query: 288 GHAD 291
Sbjct: 117 AIKA 120
Score = 103 bits (260), Expect = 1e-27
Identities = 33/108 (30%), Positives = 45/108 (41%), Gaps = 1/108 (0%)
Query: 206 VDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITL 265
+ + +WA G D + V G +V + G LH AA G E LE L+
Sbjct: 3 LGSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLK 62
Query: 266 CGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRTY 313
GAD++ D + + L AV GH LLL GA + G T
Sbjct: 63 -GADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTA 109
Score = 78.2 bits (194), Expect = 3e-18
Identities = 24/108 (22%), Positives = 42/108 (38%), Gaps = 1/108 (0%)
Query: 67 TVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVN 126
+ +N L + + D + E G PLH AA G + ++ LL A++N
Sbjct: 9 KEFMWALKNGDLDEVKDYVAKGED-VNRTLEGGRKPLHYAADCGQLEILEFLLLKGADIN 67
Query: 127 SQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQ 174
+ D + + A G V ++ +LS GA+ + G
Sbjct: 68 APDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDN 115
Score = 70.9 bits (175), Expect = 1e-15
Identities = 30/119 (25%), Positives = 46/119 (38%), Gaps = 2/119 (1%)
Query: 31 GATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPD 90
M+A + G EVK +A + V + LHY A+ L E +L D
Sbjct: 7 CDKEFMWALKNGDLDEVKDYVAKGED-VNRTLEGGRKPLHYAADCGQLEILEFLLLKGAD 65
Query: 91 LIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALE 149
I A D+ TPL A G+V + LL+ A+ + +G + L+
Sbjct: 66 -INAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKALLQ 123
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1,
ankyrin repeat domain, transport protein; HET: ATP;
2.70A {Rattus norvegicus} PDB: 2nyj_A*
Length = 273
Score = 108 bits (271), Expect = 8e-28
Identities = 50/298 (16%), Positives = 83/298 (27%), Gaps = 78/298 (26%)
Query: 33 TSLMYAAQQGKDAEVKAILA------SRPNAVRERDR-TRKTVLHYCAENTILSCAETI- 84
S+ A Q E++++L R +D T KT L N +TI
Sbjct: 15 RSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIA 74
Query: 85 --------LEVAPDLIEA----ADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEG 132
+ + A + G T LH+A N+ L+ L+ + A+V + N
Sbjct: 75 LLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGD 134
Query: 133 HSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAV 192
+ G P+ A+ LA+
Sbjct: 135 -------------------FFKKTKGRPGFYFGELPLSLAAC-TNQ-----------LAI 163
Query: 193 LKVLLHH---NVDVNVVDKDGRQPILWAASAGSSDAILA----------------LVKAG 233
+K LL + D++ D G + + L
Sbjct: 164 VKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTL 223
Query: 234 ANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHAD 291
E ++ GLT L AAS G L ++ + + A H
Sbjct: 224 KLEEITNRKGLTPLALAASSGKIGVLAYILQR--------EIHEPECRHAAAHHHHHH 273
Score = 63.6 bits (155), Expect = 7e-12
Identities = 23/132 (17%), Positives = 39/132 (29%), Gaps = 21/132 (15%)
Query: 202 DVNVVDKDGRQPILWAASAGSSDAILALV-------KAGANVEAHDKD-GLTALHCA--- 250
R+ I A + + + +L+ K + E D + G T L A
Sbjct: 5 GEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLN 64
Query: 251 ASRGHRECLETLI----------TLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYG 300
G + + L+ A G +AL A+ + TLL++ G
Sbjct: 65 LHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENG 124
Query: 301 ATPNRQDRKGRT 312
A
Sbjct: 125 ADVQAAANGDFF 136
Score = 57.9 bits (140), Expect = 7e-10
Identities = 30/113 (26%), Positives = 43/113 (38%), Gaps = 17/113 (15%)
Query: 31 GATSLMYAAQQGKDAEVKAILA--SRPNAVRERDRTRKTVLHYCAEN---------TILS 79
G L AA + A VK +L +P + RD TVLH E + S
Sbjct: 148 GELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTS 207
Query: 80 CAETILEVAPDLI------EAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVN 126
IL + L E + G TPL LAA +G + ++ +L +
Sbjct: 208 MYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHEP 260
Score = 46.3 bits (110), Expect = 5e-06
Identities = 15/87 (17%), Positives = 29/87 (33%), Gaps = 10/87 (11%)
Query: 232 AGANVEAHDKDGLTALHCAASRGHRECLETLITL------CGADVDVIDT-NGCSALFYA 284
A + ++ A ++ + + LE+L+ D + D G + L A
Sbjct: 2 VSAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKA 61
Query: 285 V---TLGHADATTLLLQYGATPNRQDR 308
+ G D LLL + +
Sbjct: 62 MLNLHNGQNDTIALLLDVARKTDSLKQ 88
Score = 35.5 bits (82), Expect = 0.017
Identities = 14/97 (14%), Positives = 23/97 (23%), Gaps = 23/97 (23%)
Query: 30 EGATSLMYAAQQGKDA---------------EVKAILASRPNAVRERDRTRKTVLHYCAE 74
G T L + + + A L +R T L A
Sbjct: 183 VGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAAS 242
Query: 75 NTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGN 111
+ + IL+ + H AA +
Sbjct: 243 SGKIGVLAYILQ--------REIHEPECRHAAAHHHH 271
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR
{Escherichia coli}
Length = 115
Score = 98.6 bits (247), Expect = 6e-26
Identities = 37/109 (33%), Positives = 51/109 (46%), Gaps = 1/109 (0%)
Query: 204 NVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLI 263
KDG P+ AA G ++ + L+ GA+V A KDG T LH AA GH E ++ L+
Sbjct: 3 MWGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLL 62
Query: 264 TLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
GADV+ +G + A GH + LL GA N +
Sbjct: 63 A-KGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSH 110
Score = 95.9 bits (240), Expect = 5e-25
Identities = 37/116 (31%), Positives = 51/116 (43%), Gaps = 13/116 (11%)
Query: 168 PIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAIL 227
P+H A++ GH +K LL DVN KDG P+ AA G ++ +
Sbjct: 12 PLHNAAK-NGH-----------AEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVK 59
Query: 228 ALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFY 283
L+ GA+V A KDG T H A GH E ++ L GADV+ +
Sbjct: 60 LLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAK-GADVNARSWGSSHHHHH 114
Score = 90.1 bits (225), Expect = 9e-23
Identities = 38/154 (24%), Positives = 57/154 (37%), Gaps = 45/154 (29%)
Query: 95 ADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSA 154
+DG TPLH AA G+ + LL+ A+VN++ +G++
Sbjct: 5 GSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNT-------------------- 44
Query: 155 GAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPI 214
P+H A++ GH ++K+LL DVN KDG P
Sbjct: 45 -------------PLHLAAKN-GH-----------AEIVKLLLAKGADVNARSKDGNTPE 79
Query: 215 LWAASAGSSDAILALVKAGANVEAHDKDGLTALH 248
A G + + L GA+V A H
Sbjct: 80 HLAKKNGHHEIVKLLDAKGADVNARSWGSSHHHH 113
Score = 76.3 bits (189), Expect = 1e-17
Identities = 32/106 (30%), Positives = 54/106 (50%), Gaps = 1/106 (0%)
Query: 66 KTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANV 125
T LH A+N + +L D + A +DG TPLHLAA G+ ++ LLA A+V
Sbjct: 10 NTPLHNAAKNGHAEEVKKLLSKGAD-VNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADV 68
Query: 126 NSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHY 171
N++ +G++ H A G E ++ + + GA+ + + H+
Sbjct: 69 NARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHHHH 114
Score = 70.9 bits (175), Expect = 1e-15
Identities = 34/111 (30%), Positives = 52/111 (46%), Gaps = 2/111 (1%)
Query: 27 NTMEGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILE 86
+ +G T L AA+ G EVK +L+ + V R + T LH A+N + +L
Sbjct: 5 GSKDGNTPLHNAAKNGHAEEVKKLLSKGAD-VNARSKDGNTPLHLAAKNGHAEIVKLLLA 63
Query: 87 VAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVH 137
D + A +DG TP HLA G+ ++ L A A+VN++ H
Sbjct: 64 KGAD-VNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHHH 113
Score = 27.7 bits (63), Expect = 1.9
Identities = 10/41 (24%), Positives = 14/41 (34%), Gaps = 1/41 (2%)
Query: 31 GATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHY 71
G T A + G VK + A + V R H+
Sbjct: 75 GNTPEHLAKKNGHHEIVKLLDAKGAD-VNARSWGSSHHHHH 114
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein,
human epidermal growth factor receptor 2, de novo
protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G
2v4h_C
Length = 136
Score = 97.8 bits (245), Expect = 2e-25
Identities = 45/166 (27%), Positives = 66/166 (39%), Gaps = 45/166 (27%)
Query: 98 DGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAE 157
D L AA AG + L+A+ A+VN++D G +
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLT----------------------- 49
Query: 158 PSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWA 217
P++ A+ GH L +++VLL + DVN VD G P+ A
Sbjct: 50 ----------PLYLATA-HGH-----------LEIVEVLLKNGADVNAVDAIGFTPLHLA 87
Query: 218 ASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLI 263
A G + L+K GA+V A DK G TA + G+ + E L
Sbjct: 88 AFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQ 133
Score = 97.5 bits (244), Expect = 3e-25
Identities = 39/132 (29%), Positives = 62/132 (46%), Gaps = 13/132 (9%)
Query: 168 PIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAIL 227
+ A++ G +++L+ + DVN D+ G P+ A + G + +
Sbjct: 17 KLLEAAR-AGQ-----------DDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVE 64
Query: 228 ALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTL 287
L+K GA+V A D G T LH AA GH E E L+ GADV+ D G +A ++
Sbjct: 65 VLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLL-KHGADVNAQDKFGKTAFDISIGN 123
Query: 288 GHADATTLLLQY 299
G+ D +L +
Sbjct: 124 GNEDLAEILQKL 135
Score = 95.5 bits (239), Expect = 2e-24
Identities = 44/119 (36%), Positives = 65/119 (54%), Gaps = 8/119 (6%)
Query: 194 KVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASR 253
HH D+ + +L AA AG D + L+ GA+V A D+ GLT L+ A +
Sbjct: 5 HHHHHHGSDLG-------KKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAH 57
Query: 254 GHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
GH E +E L+ GADV+ +D G + L A +GH + +LL++GA N QD+ G+T
Sbjct: 58 GHLEIVEVLL-KNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKT 115
Score = 77.8 bits (193), Expect = 6e-18
Identities = 33/134 (24%), Positives = 55/134 (41%), Gaps = 13/134 (9%)
Query: 67 TVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVN 126
L A ++ D + A DE G TPL+LA G++ ++ LL + A+VN
Sbjct: 16 KKLLEAARAGQDDEVRILMANGAD-VNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVN 74
Query: 127 SQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDV 186
+ D G + +H A G +E E +L GA+ + D G + G+
Sbjct: 75 AVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIG-NGN-------- 125
Query: 187 RVGLAVLKVLLHHN 200
+ ++L N
Sbjct: 126 ---EDLAEILQKLN 136
Score = 75.1 bits (186), Expect = 6e-17
Identities = 39/128 (30%), Positives = 65/128 (50%), Gaps = 2/128 (1%)
Query: 26 HNTMEGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETIL 85
H+ + L+ AA+ G+D EV+ ++A+ + V +D T L+ + L E +L
Sbjct: 9 HHGSDLGKKLLEAARAGQDDEVRILMANGAD-VNAKDEYGLTPLYLATAHGHLEIVEVLL 67
Query: 86 EVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEV 145
+ D + A D G+TPLHLAA G++ + LL H A+VN+QD G + + G
Sbjct: 68 KNGAD-VNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNE 126
Query: 146 EALETVLS 153
+ E +
Sbjct: 127 DLAEILQK 134
Score = 50.5 bits (122), Expect = 4e-08
Identities = 26/92 (28%), Positives = 36/92 (39%), Gaps = 2/92 (2%)
Query: 30 EGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAP 89
G T L A G V+ +L + + V D T LH A L AE +L+
Sbjct: 46 YGLTPLYLATAHGHLEIVEVLLKNGAD-VNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGA 104
Query: 90 DLIEAADEDGYTPLHLAAIAGNVPLIHTLLAH 121
D + A D+ G T ++ GN L L
Sbjct: 105 D-VNAQDKFGKTAFDISIGNGNEDLAEILQKL 135
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics,
PSI, protein structure initiative; 2.80A {Legionella
pneumophila} SCOP: a.118.24.1
Length = 376
Score = 100 bits (250), Expect = 3e-24
Identities = 51/348 (14%), Positives = 94/348 (27%), Gaps = 59/348 (16%)
Query: 1 MVDVISIFLSKPNLVWENGSFDKKVH------NTMEGATSLMYAAQQGKDAEVKAILASR 54
++ F+S L S+ + +H ME L+ + K + +
Sbjct: 26 WENLFQHFISANELSLMTLSYKEAIHIFLPGTKNMEQVRQLLCLYYAHYNRNAKQLWSD- 84
Query: 55 PNAVRERDRTRKTVLHYCAEN---TILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGN 111
++ + + A + L +L ++ + Y LAA G+
Sbjct: 85 ---AHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEI-VKVIQAENYQAFRLAAENGH 140
Query: 112 VPLIHTLLAHRANVNSQD--NEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIH--GGY 167
+ +++ L E + A G + L + +T I Y
Sbjct: 141 LHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYY 200
Query: 168 PIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQ--------------- 212
+A+ GH V+ LL V + + +
Sbjct: 201 AFRWAAVGRGH-----------HNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVN 249
Query: 213 ---PILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITL---- 265
+ A + D + LV G L R L+ + L
Sbjct: 250 RLKEMHDAFKLSNPDGVFDLVTKSE-----CLQGFYMLRNLIRRNDEVLLDDIRFLLSIP 304
Query: 266 ---CGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKG 310
A I + L A+ LG+ A LLL +
Sbjct: 305 GIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSVLALTKANN 352
Score = 81.1 bits (200), Expect = 2e-17
Identities = 27/130 (20%), Positives = 38/130 (29%), Gaps = 6/130 (4%)
Query: 189 GLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDK--DGLTA 246
L L +LL + V V+ + Q AA G + L + + A
Sbjct: 107 ALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHA 166
Query: 247 LHCAASRGHRECLETLITLCGADVDVIDT---NGCSALFYAVTLGHADATTLLLQYGATP 303
AA GH L L L N + + AV GH + LL
Sbjct: 167 FRLAAENGHLHVLNRLCEL-APTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVML 225
Query: 304 NRQDRKGRTY 313
+ Y
Sbjct: 226 AYAEIHEFEY 235
Score = 66.5 bits (162), Expect = 2e-12
Identities = 21/115 (18%), Positives = 30/115 (26%), Gaps = 6/115 (5%)
Query: 202 DVNVVDKDGRQPILWAASAGSS---DAILALVKAGANVEAHDKDGLTALHCAASRGHREC 258
D + AA G S D + L+ + V+ + A AA GH
Sbjct: 84 DAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHV 143
Query: 259 LETLITLCGADVDVID--TNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGR 311
L L + A A GH L + T +
Sbjct: 144 LNRLCE-LAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAE 197
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP:
k.37.1.1
Length = 93
Score = 89.7 bits (224), Expect = 8e-23
Identities = 40/93 (43%), Positives = 55/93 (59%), Gaps = 1/93 (1%)
Query: 209 DGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGA 268
+GR P+ AA G + + L++AGA+V A DK+G T LH AA GH E ++ L+ GA
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE-AGA 59
Query: 269 DVDVIDTNGCSALFYAVTLGHADATTLLLQYGA 301
DV+ D NG + L A GH + LLL+ GA
Sbjct: 60 DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 85.1 bits (212), Expect = 4e-21
Identities = 39/96 (40%), Positives = 55/96 (57%), Gaps = 12/96 (12%)
Query: 168 PIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAIL 227
P+H A++ GH L V+K+LL DVN DK+GR P+ AA G + +
Sbjct: 5 PLHLAAR-NGH-----------LEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVK 52
Query: 228 ALVKAGANVEAHDKDGLTALHCAASRGHRECLETLI 263
L++AGA+V A DK+G T LH AA GH E ++ L+
Sbjct: 53 LLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL 88
Score = 70.1 bits (173), Expect = 1e-15
Identities = 31/71 (43%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 242 DGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGA 301
+G T LH AA GH E ++ L+ GADV+ D NG + L A GH + LLL+ GA
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLE-AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 302 TPNRQDRKGRT 312
N +D+ GRT
Sbjct: 60 DVNAKDKNGRT 70
Score = 66.2 bits (163), Expect = 3e-14
Identities = 41/137 (29%), Positives = 61/137 (44%), Gaps = 45/137 (32%)
Query: 98 DGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAE 157
+G TPLHLAA G++ ++ LL A+VN++D G +
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRT----------------------- 37
Query: 158 PSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWA 217
P+H A++ GH L V+K+LL DVN DK+GR P+ A
Sbjct: 38 ----------PLHLAARN-GH-----------LEVVKLLLEAGADVNAKDKNGRTPLHLA 75
Query: 218 ASAGSSDAILALVKAGA 234
A G + + L++AGA
Sbjct: 76 ARNGHLEVVKLLLEAGA 92
Score = 65.8 bits (162), Expect = 5e-14
Identities = 35/91 (38%), Positives = 54/91 (59%), Gaps = 1/91 (1%)
Query: 66 KTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANV 125
+T LH A N L + +LE D + A D++G TPLHLAA G++ ++ LL A+V
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 126 NSQDNEGHSVVHWATVCGEVEALETVLSAGA 156
N++D G + +H A G +E ++ +L AGA
Sbjct: 62 NAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 35.4 bits (83), Expect = 0.003
Identities = 23/93 (24%), Positives = 34/93 (36%), Gaps = 35/93 (37%)
Query: 31 GATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPD 90
G T L AA+ G VK +L + +
Sbjct: 35 GRTPLHLAARNGHLEVVKLLLEAGAD---------------------------------- 60
Query: 91 LIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRA 123
+ A D++G TPLHLAA G++ ++ LL A
Sbjct: 61 -VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo
protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Length = 110
Score = 89.9 bits (224), Expect = 9e-23
Identities = 36/118 (30%), Positives = 53/118 (44%), Gaps = 9/118 (7%)
Query: 179 ASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEA 238
S + L+ + D + +L AA AG D + L+ GA+V A
Sbjct: 1 GSSHHH-----HHHSSGLVPRGSHMG---SDLGKKLLEAARAGQDDEVRILMANGADVAA 52
Query: 239 HDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLL 296
DK+G T LH AA GH E ++ L+ GADV D G +A ++ G+ D +L
Sbjct: 53 KDKNGSTPLHLAARNGHLEVVKLLLEA-GADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 78.0 bits (193), Expect = 2e-18
Identities = 30/96 (31%), Positives = 42/96 (43%), Gaps = 4/96 (4%)
Query: 217 AASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTN 276
+S LV G+++ D L AA G + + L+ GADV D N
Sbjct: 1 GSSHHHHHHSSGLVPRGSHM---GSDLGKKLLEAARAGQDDEVRILMA-NGADVAAKDKN 56
Query: 277 GCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
G + L A GH + LLL+ GA QD+ G+T
Sbjct: 57 GSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKT 92
Score = 68.4 bits (168), Expect = 8e-15
Identities = 23/93 (24%), Positives = 40/93 (43%), Gaps = 3/93 (3%)
Query: 85 LEVAPDLIEA-AD--EDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATV 141
+ L+ + D L AA AG + L+A+ A+V ++D G + +H A
Sbjct: 7 HHHSSGLVPRGSHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAAR 66
Query: 142 CGEVEALETVLSAGAEPSTPDIHGGYPIHYASQ 174
G +E ++ +L AGA+ D G +
Sbjct: 67 NGHLEVVKLLLEAGADVXAQDKFGKTAFDISID 99
Score = 65.7 bits (161), Expect = 1e-13
Identities = 29/157 (18%), Positives = 53/157 (33%), Gaps = 48/157 (30%)
Query: 106 AAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHG 165
+ + L+ +++ S
Sbjct: 1 GSSHHHHHHSSGLVPRGSHMGSD------------------------------------L 24
Query: 166 GYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDA 225
G + A++ G +++L+ + DV DK+G P+ AA G +
Sbjct: 25 GKKLLEAAR-AGQ-----------DDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEV 72
Query: 226 ILALVKAGANVEAHDKDGLTALHCAASRGHRECLETL 262
+ L++AGA+V A DK G TA + G+ + E L
Sbjct: 73 VKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 60.3 bits (147), Expect = 6e-12
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Query: 66 KTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANV 125
L A ++ D + A D++G TPLHLAA G++ ++ LL A+V
Sbjct: 25 GKKLLEAARAGQDDEVRILMANGAD-VAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADV 83
Query: 126 NSQDNEGHSVVHWATVCGEVEALE 149
+QD G + + G + E
Sbjct: 84 XAQDKFGKTAFDISIDNGNEDLAE 107
Score = 44.5 bits (106), Expect = 3e-06
Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Query: 31 GATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPD 90
L+ AA+ G+D EV+ ++A+ + V +D+ T LH A N L + +LE D
Sbjct: 24 LGKKLLEAARAGQDDEVRILMANGAD-VAAKDKNGSTPLHLAARNGHLEVVKLLLEAGAD 82
Query: 91 LIEAADEDGYTPLHLAAIAGNVPLIHTL 118
+ A D+ G T ++ GN L L
Sbjct: 83 -VXAQDKFGKTAFDISIDNGNEDLAEIL 109
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin
repeats, ANK repeat, ION transport, ionic channel, R
transmembrane, transport; 2.30A {Gallus gallus} PDB:
3jxj_A
Length = 260
Score = 94.1 bits (234), Expect = 1e-22
Identities = 38/278 (13%), Positives = 67/278 (24%), Gaps = 70/278 (25%)
Query: 33 TSLMYAAQQGKDAEVKAIL-------ASRPNAVRERDRTRKTVLHYCAENT---ILSCAE 82
L +G ++ +L + T KT L N
Sbjct: 7 PILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIP 66
Query: 83 TILEVAPDL----------IEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEG 132
+L++A G T LH+A + L+ A+V++Q
Sbjct: 67 ILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGR 126
Query: 133 HSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAV 192
G P+ A+ +
Sbjct: 127 FFQPKDEGGYFY-------------------FGELPLSLAAC-TNQ-----------PHI 155
Query: 193 LKVLLHH---NVDVNVVDKDGRQPILWAASAGSSDAILA---------LVKAGANVEA-- 238
+ L + D+ D G + + + L+ A +
Sbjct: 156 VHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDT 215
Query: 239 -----HDKDGLTALHCAASRGHRECLETLITLCGADVD 271
+ DGL+ L AA G + +I AD
Sbjct: 216 NLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADAA 253
Score = 80.2 bits (198), Expect = 1e-17
Identities = 39/289 (13%), Positives = 71/289 (24%), Gaps = 79/289 (27%)
Query: 58 VRERDRTRKTVLHYCAENTILSCAETILEVAPDLIE----------AADEDGYTPLHLAA 107
++ +R L + + + L+ G T L A
Sbjct: 1 MKVFNRPI---LFDIVSR---GSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKAL 54
Query: 108 I---AGNVPLIHTLLAHR-----------ANVNSQDNEGHSVVHWATVCGEVEALETVLS 153
+ AG I LL + G + +H A +E ++
Sbjct: 55 LNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVE 114
Query: 154 AGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQP 213
GA+ + D G P
Sbjct: 115 KGADVHAQARGRFFQPK-------------------------------DEGGYFYFGELP 143
Query: 214 ILWAASAGSSDAILALVKAG---ANVEAHDKDGLTALHCAASRGHRECLET--------L 262
+ AA + L + G A++ D G T LH + T L
Sbjct: 144 LSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDL 203
Query: 263 ITLCGADVD-------VIDTNGCSALFYAVTLGHADATTLLLQYGATPN 304
+ + A + +++ +G S L A G +++
Sbjct: 204 LLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADA 252
Score = 76.0 bits (187), Expect = 3e-16
Identities = 36/164 (21%), Positives = 49/164 (29%), Gaps = 36/164 (21%)
Query: 184 NDVRVGLAVLKVLLHHNVDVNVVD----KDGRQPILWAA---SAGSSDAILALVKAG--- 233
+L LL H + + G+ + A SAG +D I L+
Sbjct: 16 GSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKT 75
Query: 234 --------ANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTN--------- 276
+ G TALH A R + +E L+ GADV
Sbjct: 76 GNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVE-KGADVHAQARGRFFQPKDEG 134
Query: 277 -----GCSALFYAVTLGHADATTLLLQYG---ATPNRQDRKGRT 312
G L A L + G A RQD +G T
Sbjct: 135 GYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNT 178
Score = 62.9 bits (153), Expect = 1e-11
Identities = 23/124 (18%), Positives = 38/124 (30%), Gaps = 21/124 (16%)
Query: 210 GRQPILWAASAGSSDAILALVK----AGANVEAHD----KDGLTALHCAA---SRGHREC 258
R + S GS D + L+ + + G T L A S G +
Sbjct: 5 NRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDT 64
Query: 259 LETLI----------TLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDR 308
+ L+ + + G +AL A+ LL++ GA + Q R
Sbjct: 65 IPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQAR 124
Query: 309 KGRT 312
Sbjct: 125 GRFF 128
Score = 59.0 bits (143), Expect = 3e-10
Identities = 25/170 (14%), Positives = 49/170 (28%), Gaps = 33/170 (19%)
Query: 30 EGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTR--------------KTVLHYCAEN 75
G T+L A ++ V+ ++ + V + R R + L A
Sbjct: 92 RGQTALHIAIERRCKHYVELLVEKGAD-VHAQARGRFFQPKDEGGYFYFGELPLSLAACT 150
Query: 76 TILSCAETILEVAPDL--IEAADEDGYTPLHLAAIAGN---------VPLIHTLLAHRAN 124
+ E + D G T LH + + LL A
Sbjct: 151 NQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAK 210
Query: 125 VNS-------QDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGY 167
+ +N+G S + A G++ + ++ + H +
Sbjct: 211 LFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADAAAHHHHHH 260
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing
protein 1; arfgap domain, zinc-binding module, GTPase
activ metal-binding, nitration; 2.30A {Homo sapiens}
Length = 368
Score = 76.4 bits (187), Expect = 8e-16
Identities = 37/111 (33%), Positives = 49/111 (44%), Gaps = 3/111 (2%)
Query: 190 LAVLKVLLHHNVDVNVV--DKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTAL 247
L + L H DVN V +D P++ A +A S A L++ GANV D G L
Sbjct: 213 LPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPL 272
Query: 248 HCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQ 298
H A GH + GAD+ D+ G L A+ +AD TLL
Sbjct: 273 HHATILGHTGLACLFLK-RGADLGARDSEGRDPLTIAMETANADIVTLLRL 322
Score = 61.3 bits (148), Expect = 8e-11
Identities = 25/81 (30%), Positives = 35/81 (43%)
Query: 95 ADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSA 154
+D TPL A A ++ LL + ANVN D+ G +H AT+ G L
Sbjct: 231 GGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKR 290
Query: 155 GAEPSTPDIHGGYPIHYASQM 175
GA+ D G P+ A +
Sbjct: 291 GADLGARDSEGRDPLTIAMET 311
Score = 61.0 bits (147), Expect = 1e-10
Identities = 28/106 (26%), Positives = 42/106 (39%), Gaps = 3/106 (2%)
Query: 209 DGRQPILWAASAGSSDAILALVKAGANVEA--HDKDGLTALHCAASRGHRECLETLITLC 266
G + S + + GA+V +D T L A + E L+
Sbjct: 199 PGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLL-QN 257
Query: 267 GADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
GA+V+ D+ G L +A LGH L L+ GA +D +GR
Sbjct: 258 GANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRD 303
Score = 58.6 bits (141), Expect = 6e-10
Identities = 32/140 (22%), Positives = 54/140 (38%), Gaps = 14/140 (10%)
Query: 98 DGYTPLHLAAIAGNVPLIHTLLAHRANVNSQ--DNEGHSVVHWATVCGEVEALETVLSAG 155
G + ++P + LAH A+VN + + + AT + A E +L G
Sbjct: 199 PGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNG 258
Query: 156 AEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPIL 215
A + D G P+H+A+ GH + + L D+ D +GR P+
Sbjct: 259 ANVNQADSAGRGPLHHATI-LGHT-----------GLACLFLKRGADLGARDSEGRDPLT 306
Query: 216 WAASAGSSDAILALVKAGAN 235
A ++D + L A
Sbjct: 307 IAMETANADIVTLLRLAKMR 326
Score = 45.5 bits (107), Expect = 1e-05
Identities = 22/93 (23%), Positives = 37/93 (39%), Gaps = 1/93 (1%)
Query: 62 DRTRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAH 121
+ T L L E +L+ + + AD G PLH A I G+ L L
Sbjct: 232 GQDNATPLIQATAANSLLACEFLLQNGAN-VNQADSAGRGPLHHATILGHTGLACLFLKR 290
Query: 122 RANVNSQDNEGHSVVHWATVCGEVEALETVLSA 154
A++ ++D+EG + A + + + A
Sbjct: 291 GADLGARDSEGRDPLTIAMETANADIVTLLRLA 323
Score = 38.2 bits (88), Expect = 0.002
Identities = 21/82 (25%), Positives = 32/82 (39%), Gaps = 2/82 (2%)
Query: 30 EGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAP 89
+ AT L+ A + +L + N V + D + LH+ A L+
Sbjct: 234 DNATPLIQATAANSLLACEFLLQNGAN-VNQADSAGRGPLHHATILGHTGLACLFLKRGA 292
Query: 90 DLIEAADEDGYTPLHLAAIAGN 111
DL A D +G PL +A N
Sbjct: 293 DL-GARDSEGRDPLTIAMETAN 313
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium,
SGC, metal binding protein; 2.06A {Homo sapiens}
Length = 301
Score = 71.9 bits (176), Expect = 1e-14
Identities = 26/137 (18%), Positives = 51/137 (37%), Gaps = 4/137 (2%)
Query: 133 HSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAV 192
+ A ++ ++ + G + P + A ++ N + L
Sbjct: 152 PQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVL-HLAVKVANQASLPLVD 210
Query: 193 LKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAAS 252
++ + ++ DG + +AA D + L+K A V ++ G TAL A
Sbjct: 211 F--IIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARK 268
Query: 253 RGHRECLETLITLCGAD 269
+ H+EC E L+ A
Sbjct: 269 KHHKEC-EELLEQAQAG 284
Score = 69.6 bits (170), Expect = 1e-13
Identities = 26/118 (22%), Positives = 45/118 (38%), Gaps = 10/118 (8%)
Query: 190 LAVLKVLLHHNVDVN------VVDKDGRQPILWAASAGSSDAILA---LVKAGANVEAHD 240
L + + D + A + ++ +++ G +++A
Sbjct: 164 LLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKA 223
Query: 241 KDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQ 298
DG TALH AA +CL+ L+ A V ++ G +AL A H + LL Q
Sbjct: 224 ADGNTALHYAALYNQPDCLKLLLKG-RALVGTVNEAGETALDIARKKHHKECEELLEQ 280
Score = 65.4 bits (159), Expect = 3e-12
Identities = 23/114 (20%), Positives = 34/114 (29%), Gaps = 8/114 (7%)
Query: 207 DKDGRQPILWAASAGSSDAILALVKAGANVEAHDK------DGLTALHCAASRGHRECLE 260
Q + A ++L G + LH A ++ L
Sbjct: 148 CTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLP 207
Query: 261 T--LITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
I G +D +G +AL YA D LLL+ A + G T
Sbjct: 208 LVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGET 261
Score = 61.9 bits (150), Expect = 3e-11
Identities = 17/96 (17%), Positives = 39/96 (40%), Gaps = 4/96 (4%)
Query: 88 APDLIEAADEDGYTPLHLAAIAGNVPLIHT---LLAHRANVNSQDNEGHSVVHWATVCGE 144
P A LHLA N + ++ + +++++ +G++ +H+A + +
Sbjct: 179 QPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQ 238
Query: 145 VEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHAS 180
+ L+ +L A T + G + A + H
Sbjct: 239 PDCLKLLLKGRALVGTVNEAGETALDIARKK-HHKE 273
Score = 48.4 bits (115), Expect = 1e-06
Identities = 20/73 (27%), Positives = 30/73 (41%)
Query: 92 IEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETV 151
++A DG T LH AA+ + LL RA V + + G + + A E E +
Sbjct: 219 LDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELL 278
Query: 152 LSAGAEPSTPDIH 164
A A +H
Sbjct: 279 EQAQAGTFAFPLH 291
Score = 40.4 bits (94), Expect = 4e-04
Identities = 20/123 (16%), Positives = 36/123 (29%), Gaps = 9/123 (7%)
Query: 17 ENGSFDKKVHNTMEGATSLMYAAQQGKDAEVKAI--LASRPNAVRERDRTRKTVLHYCAE 74
+ G L A + A + + + + + T LHY A
Sbjct: 176 DFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAAL 235
Query: 75 NTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHS 134
C + +L+ + +E G T L +A + LL +Q
Sbjct: 236 YNQPDCLKLLLKGRAL-VGTVNEAGETALDIARKKHHK-ECEELL-----EQAQAGTFAF 288
Query: 135 VVH 137
+H
Sbjct: 289 PLH 291
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats,
metal binding protein; 2.10A {Mus musculus} SCOP:
d.211.1.1 g.45.1.1
Length = 278
Score = 68.9 bits (168), Expect = 1e-13
Identities = 25/116 (21%), Positives = 43/116 (37%), Gaps = 10/116 (8%)
Query: 193 LKVLLHHNVDVN------VVDKDGRQPILWAASAGSSDAILA---LVKAGANVEAHDKDG 243
L VD+ + + A + ++ LV+ N++ G
Sbjct: 146 LLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKG 205
Query: 244 LTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQY 299
TALH + ECL+ L+ A +++ + +G + L A L H LL Q
Sbjct: 206 STALHYCCLTDNAECLKLLLR-GKASIEIANESGETPLDIAKRLKHEHCEELLTQA 260
Score = 65.8 bits (160), Expect = 2e-12
Identities = 20/88 (22%), Positives = 38/88 (43%), Gaps = 4/88 (4%)
Query: 95 ADEDGYTPLHLAAIAGNVPLIHT---LLAHRANVNSQDNEGHSVVHWATVCGEVEALETV 151
E T LHLA + + +H L+ + N++ Q +G + +H+ + E L+ +
Sbjct: 165 GHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLL 224
Query: 152 LSAGAEPSTPDIHGGYPIHYASQMCGHA 179
L A + G P+ A ++ H
Sbjct: 225 LRGKASIEIANESGETPLDIAKRL-KHE 251
Score = 64.6 bits (157), Expect = 4e-12
Identities = 14/86 (16%), Positives = 35/86 (40%), Gaps = 2/86 (2%)
Query: 178 HASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVE 237
A + + + L+ ++ +++ G + + +++ + L++ A++E
Sbjct: 175 LAVRSVDRTSLHIVDF--LVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIE 232
Query: 238 AHDKDGLTALHCAASRGHRECLETLI 263
++ G T L A H C E L
Sbjct: 233 IANESGETPLDIAKRLKHEHCEELLT 258
Score = 63.5 bits (154), Expect = 1e-11
Identities = 23/114 (20%), Positives = 36/114 (31%), Gaps = 8/114 (7%)
Query: 207 DKDGRQPILWAASAGSSDAILALVKAGANVEAHDK------DGLTALHCAASRGHRECLE 260
+ A +L G ++ TALH A R L
Sbjct: 127 TAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLH 186
Query: 261 TLITLC--GADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
+ L ++D G +AL Y +A+ LLL+ A+ + G T
Sbjct: 187 IVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGET 240
Score = 56.5 bits (136), Expect = 2e-09
Identities = 19/119 (15%), Positives = 42/119 (35%), Gaps = 4/119 (3%)
Query: 53 SRPNAVRERDRTRKTVLHY---CAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIA 109
+ + +T LH + T L + +++ + + ++ G T LH +
Sbjct: 157 TEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGN-LDKQTGKGSTALHYCCLT 215
Query: 110 GNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYP 168
N + LL +A++ + G + + A E + A + +H Y
Sbjct: 216 DNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGRFNSHVHVEYE 274
Score = 48.1 bits (114), Expect = 1e-06
Identities = 21/108 (19%), Positives = 35/108 (32%), Gaps = 3/108 (2%)
Query: 19 GSFDKKVHNTMEGATSLMYAAQQGKDAEVKAI--LASRPNAVRERDRTRKTVLHYCAENT 76
+ T+L A + + + L + ++ T LHYC
Sbjct: 157 TEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTD 216
Query: 77 ILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRAN 124
C + +L IE A+E G TPL +A + L +
Sbjct: 217 NAECLKLLLRGKAS-IEIANESGETPLDIAKRLKHEHCEELLTQALSG 263
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 66.8 bits (163), Expect = 2e-12
Identities = 27/130 (20%), Positives = 51/130 (39%), Gaps = 15/130 (11%)
Query: 139 ATVCGEVEALETVLSAGAEPSTP------DIHGGYPIHYASQMCGHASEMGNDVRVGLAV 192
A ++ ++ + G + P +H A ++ AS L +
Sbjct: 139 AICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQAS---------LPL 189
Query: 193 LKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAAS 252
+ ++ + ++ DG + +AA D + L+K A V ++ G TAL A
Sbjct: 190 VDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARK 249
Query: 253 RGHRECLETL 262
+ H+EC E L
Sbjct: 250 KHHKECEELL 259
Score = 65.3 bits (159), Expect = 5e-12
Identities = 28/138 (20%), Positives = 48/138 (34%), Gaps = 13/138 (9%)
Query: 190 LAVLKVLLHHNVDVN------VVDKDGRQPILWAASAGSSDAIL---ALVKAGANVEAHD 240
L + + D + A + ++ +++ G +++A
Sbjct: 145 LLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKA 204
Query: 241 KDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYG 300
DG TALH AA +CL+ L+ A V ++ G +AL A H + LL Q
Sbjct: 205 ADGNTALHYAALYNQPDCLKLLLK-GRALVGTVNEAGETALDIARKKHHKECEELLEQ-- 261
Query: 301 ATPNRQDRKGRTYEYQWR 318
+Y W
Sbjct: 262 -AQAGTFAFPLHVDYSWV 278
Score = 59.5 bits (144), Expect = 4e-10
Identities = 24/128 (18%), Positives = 50/128 (39%), Gaps = 13/128 (10%)
Query: 57 AVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIA---GNVP 113
A+ RD +VL A P A LHLA ++P
Sbjct: 139 AICNRDL--LSVLEAFANGQDFGQ--------PLPGPDAQAPEELVLHLAVKVANQASLP 188
Query: 114 LIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYAS 173
L+ ++ + +++++ +G++ +H+A + + + L+ +L A T + G + A
Sbjct: 189 LVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIAR 248
Query: 174 QMCGHASE 181
+ E
Sbjct: 249 KKHHKECE 256
Score = 43.3 bits (102), Expect = 6e-05
Identities = 21/77 (27%), Positives = 31/77 (40%)
Query: 92 IEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETV 151
++A DG T LH AA+ + LL RA V + + G + + A E E +
Sbjct: 200 LDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELL 259
Query: 152 LSAGAEPSTPDIHGGYP 168
A A +H Y
Sbjct: 260 EQAQAGTFAFPLHVDYS 276
Score = 32.2 bits (73), Expect = 0.23
Identities = 18/87 (20%), Positives = 30/87 (34%), Gaps = 4/87 (4%)
Query: 14 LVWENGSFDKKVHNTMEGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCA 73
++ G D K +G T+L YAA + +K +L R V + +T L
Sbjct: 193 IIQNGGHLDAK---AADGNTALHYAALYNQPDCLKLLLKGRAL-VGTVNEAGETALDIAR 248
Query: 74 ENTILSCAETILEVAPDLIEAADEDGY 100
+ C E + + Y
Sbjct: 249 KKHHKECEELLEQAQAGTFAFPLHVDY 275
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 52.9 bits (126), Expect = 8e-08
Identities = 54/311 (17%), Positives = 95/311 (30%), Gaps = 86/311 (27%)
Query: 3 DVISIFLSKPNLVWENGSFD-KKVHNTMEGATSLMYAAQQGKDAEVKAILASRPNAVRER 61
D++S+F V FD K V + + S E+ I+ S +AV
Sbjct: 20 DILSVFE--DAFVDN---FDCKDVQDMPKSILS---------KEEIDHIIMS-KDAVSGT 64
Query: 62 DRTRKTVLHYCAENTILSCAETILEV--------------APDLIEAADEDGYTPLH--- 104
R T+L E + E +L + P ++ + L+
Sbjct: 65 LRLFWTLLSK-QEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDN 123
Query: 105 LAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGE-VEALETVLSAGAEPSTPDI 163
NV + L R + + ++ G+ AL+ LS +
Sbjct: 124 QVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF- 182
Query: 164 HGGYPIHYASQMCGHASEMGNDVRVGLAVLKVL--LHHNVDVNVVDKDGRQPILWAASAG 221
I + + + N VL++L L + +D N W + +
Sbjct: 183 ----KIFWLN--------LKNCNSPE-TVLEMLQKLLYQIDPN-----------WTSRSD 218
Query: 222 SSDAILALVKAGANVEAHD-KDGLTALHCAASRGHRECLETLITLCGADV---DVIDT-- 275
S I + H + L L S+ + CL L+ L +V +
Sbjct: 219 HSSNI--------KLRIHSIQAELRRL--LKSKPYENCL--LV-L--LNVQNAKAWNAFN 263
Query: 276 NGCSALFYAVT 286
C L +T
Sbjct: 264 LSCKIL---LT 271
Score = 41.4 bits (96), Expect = 4e-04
Identities = 42/294 (14%), Positives = 81/294 (27%), Gaps = 86/294 (29%)
Query: 15 VWENGSFDKKVHNTME-GATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCA 73
V + K N L+ + +V L++ D T+
Sbjct: 253 VQ-----NAKAWNAFNLSCKILLTT----RFKQVTDFLSAATTTHISLDHHSMTLTPDEV 303
Query: 74 ENTILSCAETILEVAPDL-IEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEG 132
++ +L + + DL E + P L+ IA ++ R + + DN
Sbjct: 304 KSLLLKYLDCRPQ---DLPREVLTTN---PRRLSIIAESI---------RDGLATWDN-- 346
Query: 133 HSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAV 192
W V + L T++ + P + + L+V
Sbjct: 347 -----WKHV--NCDKLTTIIESSLNVLEPAEYRKM---FDR----------------LSV 380
Query: 193 LKVLLHHNVDVNVVDKDGRQP-----ILWAASAGSSDAILA--LVKAGANVEAHDKDGLT 245
++ P ++W S ++ L K VE K+
Sbjct: 381 F------PPSAHI-------PTILLSLIWFDVIKSDVMVVVNKLHKYSL-VEKQPKESTI 426
Query: 246 ALH---------CAASRG-HRECLETLITLCGADVDVIDTNGCSALFYAVTLGH 289
++ HR ++ D D + FY+ +GH
Sbjct: 427 SIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYS-HIGH 479
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 39.3 bits (91), Expect = 0.002
Identities = 53/359 (14%), Positives = 98/359 (27%), Gaps = 99/359 (27%)
Query: 2 VDVISIFLSKPNLVWENGSFDKKVHNTMEGATSLMYAAQQGKDAEVKAILASRPNAVRER 61
+D S ++P L +GS + + + T+ + A Q ++ + IL
Sbjct: 1 MDAYS---TRP-LTLSHGSLE----HVLLVPTASFFIASQLQE-QFNKILPEPTEGFAAD 51
Query: 62 DRTRKTV------LHYCA---ENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNV 112
D L Y + E + + + +L + L E E+ Y + GN
Sbjct: 52 DEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLC--LTEF--ENCY-------LEGND 100
Query: 113 PLIHTLLAHRANVNSQDNEGHSVVHW------ATVCGEVEALETVLSA---GAEPSTPDI 163
IH L A + D A + + + SA +
Sbjct: 101 --IHALAAK--LLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQL 156
Query: 164 H---GG-----------------YP------IHYASQMCGHASEMGNDVRVGLAVLKVLL 197
GG Y I ++++ D + +
Sbjct: 157 VAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDA-------EKVF 209
Query: 198 HHNVDV-NVVDKDGRQP-ILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGH 255
+++ ++ P + S S ++ +++ V G T
Sbjct: 210 TQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFT---------P 260
Query: 256 RECLETL--ITLCGADV---DVIDTNGCSALFYAVTLGHADATTLLLQYG-----ATPN 304
E L T + I F+ A T+L G A PN
Sbjct: 261 GELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSV---RKAITVLFFIGVRCYEAYPN 316
Score = 38.1 bits (88), Expect = 0.004
Identities = 28/163 (17%), Positives = 53/163 (32%), Gaps = 50/163 (30%)
Query: 30 EGATSLMYAAQQGKDAEVK-------AILASRPNAVRE-RDRTRKTVLHYCA-----ENT 76
E +TS + +++G + A+ A + + + A E
Sbjct: 1712 EHSTSYTFRSEKG---LLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYA 1768
Query: 77 ILSC-AETI-LEVAPDLI--------EAA--DEDGYTPLHLAAIAGN----------VPL 114
L+ A+ + +E +++ A DE G + + AI +
Sbjct: 1769 ALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQY 1828
Query: 115 IHTLLAHRAN-----VNSQDN-EGHSVVHWATVCGEVEALETV 151
+ + R VN N E V G++ AL+TV
Sbjct: 1829 VVERVGKRTGWLVEIVN--YNVENQQYV----AAGDLRALDTV 1865
Score = 34.3 bits (78), Expect = 0.056
Identities = 43/207 (20%), Positives = 63/207 (30%), Gaps = 49/207 (23%)
Query: 113 PLI--HTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIH 170
PL H L H V + + + +A EP+TP
Sbjct: 8 PLTLSHGSLEHVLLV-PTASFFIASQLQEQFNKILPEPTEGFAADDEPTTP-------AE 59
Query: 171 YASQMCGHASEMGNDVRVG--LAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILA 228
+ G+ S + +VG VL + L L +D I A
Sbjct: 60 LVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEF----------ENCYL-----EGND-IHA 103
Query: 229 LVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLG 288
L A + + L +E ++ IT D SALF AV G
Sbjct: 104 LA---AKLLQENDTTLVK--------TKELIKNYITARIMAKRPFDKKSNSALFRAVGEG 152
Query: 289 HADATTLLLQYGATPNRQDRKGRTYEY 315
+A L+ +G Q G T +Y
Sbjct: 153 NA---QLVAIFGG----Q---GNTDDY 169
>3uo9_A Glutaminase kidney isoform, mitochondrial; hydrolase-hydrolase
inhibitor complex; HET: 04A; 2.30A {Homo sapiens} PDB:
3unw_A* 3ss3_A 3ss4_A 3ss5_A*
Length = 534
Score = 33.6 bits (76), Expect = 0.081
Identities = 18/92 (19%), Positives = 30/92 (32%), Gaps = 17/92 (18%)
Query: 181 EMGNDVRVGLAVLKVL-----LH---------HNVDVNVVDKDGRQPI--LWAASAGSSD 224
+MGN V+ G+ L H +D D R L S
Sbjct: 437 KMGNSVK-GIHFCHDLVSLCNFHNYDNLRHFAKKLDPRREGGDQRHSFGPLDYESLQQEL 495
Query: 225 AILALVKAGANVEAHDKDGLTALHCAASRGHR 256
A+ V + E+++ T ++ S G +
Sbjct: 496 ALKETVWKKVSPESNEDISTTVVYRMESLGEK 527
>3agd_A Salt-tolerant glutaminase; glutaminase super family, hydrolase;
2.20A {Micrococcus luteus} PDB: 3age_A* 3if5_A 3ih8_A
3ih9_A 3iha_A* 3ihb_A 2dfw_A
Length = 456
Score = 29.8 bits (66), Expect = 1.5
Identities = 16/114 (14%), Positives = 31/114 (27%), Gaps = 4/114 (3%)
Query: 135 VVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLK 194
V+ + ++AL + + +P T YP + A
Sbjct: 334 VIRFGGAEAVLDALTDLRTGAEKPGTGWDAAVYPRWQEAAADRAALSAATGGGAVHEAAA 393
Query: 195 VLLHHNVDVN----VVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGL 244
D V++ I ++ + L G VE D + +
Sbjct: 394 AAARDENDGPIRTVVLNLARVDRIDDVGRRLIAEGVRRLQADGVRVEVEDPERI 447
>2k9m_A RNA polymerase sigma factor RPON; core binding domain,
transcription; NMR {Aquifex aeolicus}
Length = 130
Score = 27.6 bits (62), Expect = 2.7
Identities = 7/32 (21%), Positives = 14/32 (43%)
Query: 78 LSCAETILEVAPDLIEAADEDGYTPLHLAAIA 109
L E+A +L+ +E G+ + I+
Sbjct: 15 LELEGKEQELALELLNYLNEKGFLSKSVEEIS 46
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex,
biotin-dependent carboxylase, ligase; HET: BTI; 3.20A
{Ruegeria pomeroyi}
Length = 681
Score = 28.4 bits (64), Expect = 3.5
Identities = 30/181 (16%), Positives = 51/181 (28%), Gaps = 27/181 (14%)
Query: 84 ILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWA--TV 141
I E P+ E + +AA A +H + R S + H V
Sbjct: 461 IAEEYPEGFEGVNLPETDLRRVAAAAA---AMHRVAEIRRTRVSGRMDNHERRVGTEWVV 517
Query: 142 CGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMG---NDVRVGLAVLKV--- 195
+ ++A + ST G + S + + L V K+
Sbjct: 518 TLQGADFPVTIAADHDGSTVSFDDGSSMRVTSDWTPGDQLANLMVDGAPLVLKVGKISGG 577
Query: 196 --LLHHNVDVNVVDKDGRQPILW-----AASAGSSDAILA---------LVKAGANVEAH 239
+ D+ V + RQ L +S +L V+ G V+
Sbjct: 578 FRIRTRGADLKVHVRTPRQAELARLMPEKLPPDTSKMLLCPMPGLIVKVDVEVGQEVQEG 637
Query: 240 D 240
Sbjct: 638 Q 638
>2ccy_A Cytochrome C; electron transport (heme protein); HET: HEM; 1.67A
{Phaeospirillum molischianum} SCOP: a.24.3.2
Length = 128
Score = 26.2 bits (57), Expect = 8.0
Identities = 6/40 (15%), Positives = 15/40 (37%)
Query: 10 SKPNLVWENGSFDKKVHNTMEGATSLMYAAQQGKDAEVKA 49
+KP + + + ++ + AA + +KA
Sbjct: 70 TKPEAFGSKSAEFLEGWKALATESTKLAAAAKAGPDALKA 109
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION
transporter, symporter, transport protein; HET: NAI;
2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A*
2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Length = 144
Score = 26.5 bits (59), Expect = 8.2
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 187 RVGLAVLKVLLHHNVDVNVVDKD 209
R G +++K L +V VD +
Sbjct: 16 RFGGSIVKELHRMGHEVLAVDIN 38
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.132 0.393
Gapped
Lambda K H
0.267 0.0902 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,845,431
Number of extensions: 290465
Number of successful extensions: 2739
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1280
Number of HSP's successfully gapped: 376
Length of query: 321
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 227
Effective length of database: 4,077,219
Effective search space: 925528713
Effective search space used: 925528713
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.4 bits)