BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13801
(88 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2F7F|A Chain A, Crystal Structure Of Enterococcus Faecalis Putative
Nicotinate Phosphoribosyltransferase, New York
Structural Genomics Consortium
Length = 494
Score = 65.5 bits (158), Expect = 7e-12, Method: Composition-based stats.
Identities = 27/60 (45%), Positives = 40/60 (66%)
Query: 24 LCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQGEFTIFAGLEECIRFLENFRYSDS 83
L TD+YQI M YW+ G+ +AVF+ +FR+ PF + IFAGLE + +LEN +++S
Sbjct: 12 LHTDMYQINMMQTYWELGRADLHAVFECYFREMPFNHGYAIFAGLERLVNYLENLTFTES 71
>pdb|4GIR|A Chain A, Crystal Structure Of An Enolase Family Member From Vibrio
Harveyi (Efi-Target 501692) With Homology To Mannonate
Dehydratase, With Mg, Ethylene Glycol And Sulfate Bound
(Ordered Loops, Space Group P41212)
pdb|4GIR|B Chain B, Crystal Structure Of An Enolase Family Member From Vibrio
Harveyi (Efi-Target 501692) With Homology To Mannonate
Dehydratase, With Mg, Ethylene Glycol And Sulfate Bound
(Ordered Loops, Space Group P41212)
pdb|4GIR|C Chain C, Crystal Structure Of An Enolase Family Member From Vibrio
Harveyi (Efi-Target 501692) With Homology To Mannonate
Dehydratase, With Mg, Ethylene Glycol And Sulfate Bound
(Ordered Loops, Space Group P41212)
pdb|4GIR|D Chain D, Crystal Structure Of An Enolase Family Member From Vibrio
Harveyi (Efi-Target 501692) With Homology To Mannonate
Dehydratase, With Mg, Ethylene Glycol And Sulfate Bound
(Ordered Loops, Space Group P41212)
pdb|4GIS|A Chain A, Crystal Structure Of An Enolase Family Member From Vibrio
Harveyi (Efi-Target 501692) With Homology To Mannonate
Dehydratase, With Mg, Glycerol And Dicarboxylates Bound
(Mixed Loops, Space Group I4122)
pdb|4GIS|B Chain B, Crystal Structure Of An Enolase Family Member From Vibrio
Harveyi (Efi-Target 501692) With Homology To Mannonate
Dehydratase, With Mg, Glycerol And Dicarboxylates Bound
(Mixed Loops, Space Group I4122)
pdb|4GGH|A Chain A, Crystal Structure Of An Enolase Family Member From Vibrio
Harveyi (Efi-Target 501692) With Homology To Mannonate
Dehydratase, With Mg, Hepes, And Ethylene Glycol Bound
(Ordered Loops, Space Group C2221)
pdb|4GGH|B Chain B, Crystal Structure Of An Enolase Family Member From Vibrio
Harveyi (Efi-Target 501692) With Homology To Mannonate
Dehydratase, With Mg, Hepes, And Ethylene Glycol Bound
(Ordered Loops, Space Group C2221)
pdb|4GGH|C Chain C, Crystal Structure Of An Enolase Family Member From Vibrio
Harveyi (Efi-Target 501692) With Homology To Mannonate
Dehydratase, With Mg, Hepes, And Ethylene Glycol Bound
(Ordered Loops, Space Group C2221)
pdb|4GGH|D Chain D, Crystal Structure Of An Enolase Family Member From Vibrio
Harveyi (Efi-Target 501692) With Homology To Mannonate
Dehydratase, With Mg, Hepes, And Ethylene Glycol Bound
(Ordered Loops, Space Group C2221)
Length = 422
Score = 32.0 bits (71), Expect = 0.081, Method: Composition-based stats.
Identities = 11/22 (50%), Positives = 17/22 (77%)
Query: 27 DLYQITMAYAYWKSGKVTDNAV 48
DL+Q+ M AYW++G V +NA+
Sbjct: 92 DLWQMMMVNAYWRNGPVINNAI 113
>pdb|3SBF|A Chain A, Crystal Structure Of The Mutant P311a Of Enolase
Superfamily Member From Vibrionales Bacterium Complexed
With Mg And D-Arabinonate
pdb|3SBF|B Chain B, Crystal Structure Of The Mutant P311a Of Enolase
Superfamily Member From Vibrionales Bacterium Complexed
With Mg And D-Arabinonate
pdb|3SBF|C Chain C, Crystal Structure Of The Mutant P311a Of Enolase
Superfamily Member From Vibrionales Bacterium Complexed
With Mg And D-Arabinonate
pdb|3SBF|D Chain D, Crystal Structure Of The Mutant P311a Of Enolase
Superfamily Member From Vibrionales Bacterium Complexed
With Mg And D-Arabinonate
Length = 401
Score = 32.0 bits (71), Expect = 0.081, Method: Composition-based stats.
Identities = 11/22 (50%), Positives = 17/22 (77%)
Query: 27 DLYQITMAYAYWKSGKVTDNAV 48
DL+Q+ M AYW++G V +NA+
Sbjct: 71 DLWQMMMVNAYWRNGPVINNAI 92
>pdb|3R25|A Chain A, Crystal Structure Of Enolase Superfamily Member From
Vibrionales Bacterium Complexed With Mg And Glycerol In
The Active Site
pdb|3R25|B Chain B, Crystal Structure Of Enolase Superfamily Member From
Vibrionales Bacterium Complexed With Mg And Glycerol In
The Active Site
pdb|3R25|C Chain C, Crystal Structure Of Enolase Superfamily Member From
Vibrionales Bacterium Complexed With Mg And Glycerol In
The Active Site
pdb|3R25|D Chain D, Crystal Structure Of Enolase Superfamily Member From
Vibrionales Bacterium Complexed With Mg And Glycerol In
The Active Site
pdb|3R25|E Chain E, Crystal Structure Of Enolase Superfamily Member From
Vibrionales Bacterium Complexed With Mg And Glycerol In
The Active Site
pdb|3R25|F Chain F, Crystal Structure Of Enolase Superfamily Member From
Vibrionales Bacterium Complexed With Mg And Glycerol In
The Active Site
pdb|3R25|G Chain G, Crystal Structure Of Enolase Superfamily Member From
Vibrionales Bacterium Complexed With Mg And Glycerol In
The Active Site
pdb|3R25|H Chain H, Crystal Structure Of Enolase Superfamily Member From
Vibrionales Bacterium Complexed With Mg And Glycerol In
The Active Site
Length = 401
Score = 32.0 bits (71), Expect = 0.081, Method: Composition-based stats.
Identities = 11/22 (50%), Positives = 17/22 (77%)
Query: 27 DLYQITMAYAYWKSGKVTDNAV 48
DL+Q+ M AYW++G V +NA+
Sbjct: 71 DLWQMMMVNAYWRNGPVINNAI 92
>pdb|3DFH|A Chain A, Crystal Structure Of Putative Mandelate Racemase
MUCONATE Lactonizing Enzyme From Vibrionales Bacterium
Swat-3
pdb|3DFH|B Chain B, Crystal Structure Of Putative Mandelate Racemase
MUCONATE Lactonizing Enzyme From Vibrionales Bacterium
Swat-3
pdb|3DFH|C Chain C, Crystal Structure Of Putative Mandelate Racemase
MUCONATE Lactonizing Enzyme From Vibrionales Bacterium
Swat-3
Length = 394
Score = 32.0 bits (71), Expect = 0.081, Method: Composition-based stats.
Identities = 11/22 (50%), Positives = 17/22 (77%)
Query: 27 DLYQITMAYAYWKSGKVTDNAV 48
DL+Q+ M AYW++G V +NA+
Sbjct: 71 DLWQMMMVNAYWRNGPVINNAI 92
>pdb|3S47|A Chain A, Crystal Structure Of Enolase Superfamily Member From
Clostridium Beijerincki Complexed With Mg
pdb|3S47|B Chain B, Crystal Structure Of Enolase Superfamily Member From
Clostridium Beijerincki Complexed With Mg
Length = 401
Score = 30.0 bits (66), Expect = 0.30, Method: Composition-based stats.
Identities = 9/22 (40%), Positives = 17/22 (77%)
Query: 27 DLYQITMAYAYWKSGKVTDNAV 48
DL+Q+ M +YW++G + +NA+
Sbjct: 71 DLWQMMMVNSYWRNGPILNNAI 92
>pdb|3GY1|A Chain A, Crystal Structure Of Putative Mandelate RacemaseMUCONATE
LACTONIZING Protein From Clostridium Beijerinckii Ncimb
8052
pdb|3GY1|B Chain B, Crystal Structure Of Putative Mandelate RacemaseMUCONATE
LACTONIZING Protein From Clostridium Beijerinckii Ncimb
8052
Length = 408
Score = 30.0 bits (66), Expect = 0.30, Method: Composition-based stats.
Identities = 9/22 (40%), Positives = 17/22 (77%)
Query: 27 DLYQITMAYAYWKSGKVTDNAV 48
DL+Q+ M +YW++G + +NA+
Sbjct: 71 DLWQMMMVNSYWRNGPILNNAI 92
>pdb|4HNL|A Chain A, Crystal Structure Of Enolase Egbg_01401 (Target
Efi-502226) From Enterococcus Gallinarum Eg2
Length = 421
Score = 28.9 bits (63), Expect = 0.66, Method: Composition-based stats.
Identities = 8/22 (36%), Positives = 17/22 (77%)
Query: 27 DLYQITMAYAYWKSGKVTDNAV 48
D++Q+ +YW++G +T+NA+
Sbjct: 91 DIWQVMNVNSYWRNGPITNNAI 112
>pdb|3TJI|A Chain A, Crystal Structure Of An Enolase From Enterobacter Sp. 638
(Efi Target Efi-501662) With Bound Mg
pdb|3TJI|B Chain B, Crystal Structure Of An Enolase From Enterobacter Sp. 638
(Efi Target Efi-501662) With Bound Mg
pdb|3TJI|C Chain C, Crystal Structure Of An Enolase From Enterobacter Sp. 638
(Efi Target Efi-501662) With Bound Mg
pdb|3TJI|D Chain D, Crystal Structure Of An Enolase From Enterobacter Sp. 638
(Efi Target Efi-501662) With Bound Mg
Length = 422
Score = 27.7 bits (60), Expect = 1.7, Method: Composition-based stats.
Identities = 9/22 (40%), Positives = 16/22 (72%)
Query: 27 DLYQITMAYAYWKSGKVTDNAV 48
DL+Q+ AYW++G + +NA+
Sbjct: 92 DLWQMMNVNAYWRNGPLMNNAI 113
>pdb|1ZK7|A Chain A, Crystal Structure Of Tn501 Mera
pdb|1ZX9|A Chain A, Crystal Structure Of Tn501 Mera
Length = 467
Score = 26.9 bits (58), Expect = 2.9, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 31 ITMAYAYWKSG-KVTDNAVFDLFFRQNPFQGEFTIFAGLEECIRFLENFRYS 81
+ +A A+ + G KVT A LFFR++P GE A E I LE+ + S
Sbjct: 189 LELAQAFARLGSKVTVLARNTLFFREDPAIGEAVTAAFRAEGIEVLEHTQAS 240
>pdb|2WSI|A Chain A, Crystal Structure Of Yeast Fad Synthetase (Fad1) In
Complex With Fad
Length = 306
Score = 25.8 bits (55), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 46 NAVFDLFFRQNPFQGEFTIFAGLEECIRFLENF 78
N+ FD F+ P Q T+F EE LENF
Sbjct: 87 NSQFDFEFQSFPMQRLPTVFIDQEETFPTLENF 119
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.329 0.139 0.441
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,406,270
Number of Sequences: 62578
Number of extensions: 78767
Number of successful extensions: 159
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 149
Number of HSP's gapped (non-prelim): 11
length of query: 88
length of database: 14,973,337
effective HSP length: 56
effective length of query: 32
effective length of database: 11,468,969
effective search space: 367007008
effective search space used: 367007008
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 45 (21.9 bits)