BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13801
(88 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9VQX4|PNCB_DROME Nicotinate phosphoribosyltransferase OS=Drosophila melanogaster
GN=CG3714 PE=2 SV=2
Length = 555
Score = 109 bits (272), Expect = 6e-24, Method: Composition-based stats.
Identities = 49/74 (66%), Positives = 57/74 (77%)
Query: 10 MEASAVNMLCIMFWLCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQGEFTIFAGLE 69
M+ +N ++ L TDLYQITMAYAYWKS K D AVFDLFFR NPF GEFTIFAGLE
Sbjct: 14 MDRGRMNQNGVVQPLLTDLYQITMAYAYWKSDKTDDTAVFDLFFRNNPFHGEFTIFAGLE 73
Query: 70 ECIRFLENFRYSDS 83
EC++FL++F YS S
Sbjct: 74 ECLKFLDSFHYSQS 87
>sp|Q95XX1|PNCB_CAEEL Nicotinate phosphoribosyltransferase OS=Caenorhabditis elegans
GN=Y54G2A.17 PE=2 SV=3
Length = 562
Score = 102 bits (255), Expect = 5e-22, Method: Composition-based stats.
Identities = 42/60 (70%), Positives = 52/60 (86%)
Query: 24 LCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQGEFTIFAGLEECIRFLENFRYSDS 83
L TD YQITM YAYWK+G + AVFD+FFR+NPFQGEFT+FAGLE+C+RF+ENF++S S
Sbjct: 31 LLTDFYQITMCYAYWKTGTHNEPAVFDVFFRKNPFQGEFTVFAGLEDCLRFVENFKFSQS 90
>sp|Q55G10|PNCB_DICDI Nicotinate phosphoribosyltransferase OS=Dictyostelium discoideum
GN=naprt PE=2 SV=1
Length = 589
Score = 87.0 bits (214), Expect = 3e-17, Method: Composition-based stats.
Identities = 37/58 (63%), Positives = 47/58 (81%)
Query: 24 LCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQGEFTIFAGLEECIRFLENFRYS 81
L TDLYQITMAY+ WK+ + AVFDL+FR++PF GEFT+FAGLEE IRF+ +F Y+
Sbjct: 63 LLTDLYQITMAYSLWKNNRHEIPAVFDLYFRKSPFGGEFTVFAGLEEVIRFVSDFHYT 120
>sp|Q6P3H4|PNCB_DANRE Nicotinate phosphoribosyltransferase OS=Danio rerio GN=naprt1
PE=2 SV=2
Length = 546
Score = 84.3 bits (207), Expect = 2e-16, Method: Composition-based stats.
Identities = 36/59 (61%), Positives = 47/59 (79%), Gaps = 2/59 (3%)
Query: 24 LCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQGEFTIFAGLEECIRFLENFRYSD 82
L TDLYQ MAYAYW++G+ + AVF+LFFR NPF G F++FAGL +C+ FL+NF +SD
Sbjct: 17 LLTDLYQ--MAYAYWRAGRHNEPAVFELFFRDNPFGGGFSLFAGLSDCLLFLQNFSFSD 73
>sp|A5PK51|PNCB_BOVIN Nicotinate phosphoribosyltransferase OS=Bos taurus GN=NAPRT1 PE=2
SV=2
Length = 538
Score = 82.0 bits (201), Expect = 1e-15, Method: Composition-based stats.
Identities = 34/60 (56%), Positives = 42/60 (70%)
Query: 24 LCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQGEFTIFAGLEECIRFLENFRYSDS 83
L TDLYQ TMA YW++G+ D A F+LFFRQ PF G F + AGL +C+RFL FR D+
Sbjct: 16 LLTDLYQATMALGYWRAGRAQDQAEFELFFRQCPFGGAFALAAGLRDCVRFLRAFRLRDA 75
>sp|Q6XQN6|PNCB_HUMAN Nicotinate phosphoribosyltransferase OS=Homo sapiens GN=NAPRT1
PE=1 SV=2
Length = 538
Score = 79.3 bits (194), Expect = 6e-15, Method: Composition-based stats.
Identities = 33/60 (55%), Positives = 42/60 (70%)
Query: 24 LCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQGEFTIFAGLEECIRFLENFRYSDS 83
L TDLYQ TMA YW++G+ D A F+LFFR+ PF G F + AGL +C+RFL FR D+
Sbjct: 16 LLTDLYQATMALGYWRAGRARDAAEFELFFRRCPFGGAFALAAGLRDCVRFLRAFRLRDA 75
>sp|Q6XQN1|PNCB_RAT Nicotinate phosphoribosyltransferase OS=Rattus norvegicus
GN=Naprt1 PE=2 SV=1
Length = 538
Score = 78.2 bits (191), Expect = 1e-14, Method: Composition-based stats.
Identities = 32/60 (53%), Positives = 41/60 (68%)
Query: 24 LCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQGEFTIFAGLEECIRFLENFRYSDS 83
L TDLYQ TM YW++G+ + A F+LFFR PF G F + AGL++CIRFL FR D+
Sbjct: 16 LLTDLYQATMGLGYWRAGRACEEAEFELFFRHCPFGGSFALTAGLQDCIRFLRAFRLRDA 75
>sp|Q8CC86|PNCB_MOUSE Nicotinate phosphoribosyltransferase OS=Mus musculus GN=Naprt1
PE=2 SV=1
Length = 538
Score = 77.8 bits (190), Expect = 2e-14, Method: Composition-based stats.
Identities = 32/60 (53%), Positives = 42/60 (70%)
Query: 24 LCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQGEFTIFAGLEECIRFLENFRYSDS 83
L TDLYQ TMA YW++G+ + A F+LFFR PF G F + AGL++C+RFL FR D+
Sbjct: 16 LLTDLYQATMALGYWRAGRACEAAEFELFFRHCPFGGSFALSAGLQDCMRFLRAFRLRDA 75
>sp|O32090|PNCB_BACSU Nicotinate phosphoribosyltransferase OS=Bacillus subtilis (strain
168) GN=pncB PE=3 SV=1
Length = 490
Score = 77.4 bits (189), Expect = 3e-14, Method: Composition-based stats.
Identities = 32/60 (53%), Positives = 44/60 (73%)
Query: 24 LCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQGEFTIFAGLEECIRFLENFRYSDS 83
L TDLYQI MA YW+ G A+F+LFFR+ PF+ + +FAGLE+ I +LENF+++DS
Sbjct: 13 LHTDLYQINMAETYWRDGIHEKKAIFELFFRRLPFENGYAVFAGLEKAIEYLENFKFTDS 72
>sp|O53770|PNCB2_MYCTU Nicotinate phosphoribosyltransferase pncB2 OS=Mycobacterium
tuberculosis GN=pncB2 PE=2 SV=1
Length = 463
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 26/59 (44%), Positives = 40/59 (67%), Gaps = 1/59 (1%)
Query: 24 LCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQGEFTIFAGLEECIRFLENFRYSD 82
L TDLY++TMA AYW +++ AVF++FFR+ P + + AGL + + FLE FR+ +
Sbjct: 10 LFTDLYEVTMAQAYWAE-RMSGTAVFEIFFRKLPPGRSYIMAAGLADVVEFLEAFRFDE 67
>sp|Q9FKR3|PP404_ARATH Pentatricopeptide repeat-containing protein At5g38730
OS=Arabidopsis thaliana GN=At5g38730 PE=2 SV=1
Length = 596
Score = 35.4 bits (80), Expect = 0.10, Method: Composition-based stats.
Identities = 14/25 (56%), Positives = 22/25 (88%), Gaps = 1/25 (4%)
Query: 32 TMAYAYWKSGKVTD-NAVFDLFFRQ 55
TMAYAYW++GKVT+ +A+FD+ + +
Sbjct: 522 TMAYAYWRTGKVTEASALFDVMYNR 546
>sp|Q10641|PNCB1_MYCTU Nicotinate phosphoribosyltransferase pncB1 OS=Mycobacterium
tuberculosis GN=pncB1 PE=3 SV=2
Length = 448
Score = 34.7 bits (78), Expect = 0.18, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 27/57 (47%)
Query: 24 LCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQGEFTIFAGLEECIRFLENFRY 80
L TD Y++TM A + G F++F R+ P + + AG + L FR+
Sbjct: 22 LLTDKYELTMLAAALRDGSANRPTTFEVFARRLPTGRRYGVVAGTGRLLEALPQFRF 78
>sp|Q9ZVG8|PPR60_ARATH Pentatricopeptide repeat-containing protein At1g26900,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E54 PE=2
SV=1
Length = 572
Score = 32.0 bits (71), Expect = 1.0, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 7/82 (8%)
Query: 12 ASAVNMLCIMFWLCTDLYQIT-MAYAYWKSGKVTD-NAVFDLFFRQ-----NPFQGEFTI 64
A + ++LCI L DL+ IT + Y K+G ++ +FD R+ N ++
Sbjct: 246 AESAHVLCIKIGLDLDLHLITALIGMYGKTGGISSARRIFDCAIRKDVVTWNCMIDQYAK 305
Query: 65 FAGLEECIRFLENFRYSDSVPN 86
LEEC+ L +Y PN
Sbjct: 306 TGLLEECVWLLRQMKYEKMKPN 327
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.329 0.139 0.441
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,632,985
Number of Sequences: 539616
Number of extensions: 965206
Number of successful extensions: 1952
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1936
Number of HSP's gapped (non-prelim): 15
length of query: 88
length of database: 191,569,459
effective HSP length: 58
effective length of query: 30
effective length of database: 160,271,731
effective search space: 4808151930
effective search space used: 4808151930
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 55 (25.8 bits)