Query psy13801
Match_columns 88
No_of_seqs 119 out of 725
Neff 4.1
Searched_HMMs 46136
Date Fri Aug 16 20:51:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13801.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13801hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02885 nicotinate phosphorib 99.9 3.1E-24 6.8E-29 178.1 4.5 71 16-86 5-75 (545)
2 KOG2511|consensus 99.9 2.8E-23 6.1E-28 167.4 3.2 70 16-86 2-71 (420)
3 TIGR01513 NAPRTase_put putativ 99.8 7.6E-22 1.7E-26 160.2 2.9 64 23-86 1-64 (443)
4 PRK12484 nicotinate phosphorib 99.8 2.9E-21 6.3E-26 156.7 4.1 64 22-86 4-67 (443)
5 PRK09243 nicotinate phosphorib 99.8 2E-20 4.2E-25 152.3 3.6 67 20-86 7-73 (464)
6 PRK05321 nicotinate phosphorib 99.8 2.8E-20 6.1E-25 149.9 3.8 63 21-86 10-73 (400)
7 cd01570 NAPRTase_A Nicotinate 99.8 3.5E-20 7.6E-25 144.6 3.2 64 23-86 1-64 (327)
8 cd01401 PncB_like Nicotinate p 99.7 4.2E-19 9.1E-24 142.2 3.2 62 22-86 2-64 (377)
9 TIGR01514 NAPRTase nicotinate 99.7 5.3E-19 1.2E-23 142.5 2.9 63 21-86 3-66 (394)
10 COG1488 PncB Nicotinic acid ph 99.6 6.8E-17 1.5E-21 130.1 3.1 67 20-86 11-77 (405)
11 PRK09198 putative nicotinate p 99.6 1.9E-16 4.1E-21 129.9 4.6 62 21-87 6-68 (463)
12 cd01567 NAPRTase_PncB Nicotina 99.5 8.9E-15 1.9E-19 113.4 3.3 62 24-86 2-63 (343)
13 PHA02594 nadV nicotinamide pho 99.4 1.4E-13 3.1E-18 113.3 4.2 61 22-87 10-71 (470)
14 cd01569 PBEF_like pre-B-cell c 99.3 1.8E-12 4E-17 105.4 4.3 59 24-86 2-61 (407)
15 PRK08662 nicotinate phosphorib 99.1 4.4E-10 9.6E-15 88.9 7.0 60 18-79 10-69 (343)
16 cd00516 PRTase_typeII Phosphor 97.5 0.00019 4.2E-09 53.8 5.5 47 27-80 1-47 (281)
17 PRK07188 nicotinate phosphorib 95.9 0.03 6.4E-07 45.1 6.6 60 20-85 13-72 (352)
18 cd01571 NAPRTase_B Nicotinate 95.3 0.03 6.5E-07 43.7 4.6 49 25-78 3-51 (302)
19 PF08225 Antimicrobial19: Pseu 37.9 12 0.00025 19.7 0.1 14 64-77 8-21 (23)
20 PRK15468 carboxysome structura 24.9 96 0.0021 21.9 3.0 30 58-87 73-110 (111)
21 PF06062 UPF0231: Uncharacteri 24.4 31 0.00068 24.1 0.5 17 63-79 101-117 (121)
22 PF08519 RFC1: Replication fac 23.3 27 0.00059 24.9 0.0 21 67-87 104-124 (155)
23 PF02749 QRPTase_N: Quinolinat 20.8 2.3E+02 0.005 17.8 4.0 31 42-78 13-43 (88)
No 1
>PLN02885 nicotinate phosphoribosyltransferase
Probab=99.89 E-value=3.1e-24 Score=178.11 Aligned_cols=71 Identities=61% Similarity=1.077 Sum_probs=69.3
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHcCCCCCcEEEEeecccCCCCCceEeeechHHHHHHHhcCCCCCCCCC
Q psy13801 16 NMLCIMFWLCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQGEFTIFAGLEECIRFLENFRYSDSVPN 86 (88)
Q Consensus 16 ~~~~~~~~LlTDlYelTMa~~Y~~~g~~~~~A~FdlFfRk~Pf~g~f~V~AGLe~vl~~l~n~rFs~edI~ 86 (88)
|+++++.+|+||+||+||+|+||+.+.++++|+||+|||++||+|+|+|+|||+++|++|+++||+++||+
T Consensus 5 ~~~~~i~~LlTDlYklTM~~ay~~~~~~~~~avf~~f~R~~p~~~~~~v~aGL~~~l~~L~~l~Ft~edi~ 75 (545)
T PLN02885 5 PTNPMVTPLLTDLYQFTMAYAYWKAGKHLDRAVFDLFFRKNPFGGEYTVFAGLEECLRFIANFKFTDDDID 75 (545)
T ss_pred CCChhHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEEecCCCCCCcccHHHHHHHHHHHHhhCCCCHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999986
No 2
>KOG2511|consensus
Probab=99.87 E-value=2.8e-23 Score=167.44 Aligned_cols=70 Identities=43% Similarity=0.657 Sum_probs=67.5
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHcCCCCCcEEEEeecccCCCCCceEeeechHHHHHHHhcCCCCCCCCC
Q psy13801 16 NMLCIMFWLCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQGEFTIFAGLEECIRFLENFRYSDSVPN 86 (88)
Q Consensus 16 ~~~~~~~~LlTDlYelTMa~~Y~~~g~~~~~A~FdlFfRk~Pf~g~f~V~AGLe~vl~~l~n~rFs~edI~ 86 (88)
|.+|++++|+||+||+||+|+||++ .++++++|+++||++||+|+|.+++||+++++||.||+|++|||+
T Consensus 2 ~e~~~vspL~tDlYkiTM~yA~wk~-~~de~~vy~~~~R~npf~g~~~~f~~Lee~irfl~N~~lt~eei~ 71 (420)
T KOG2511|consen 2 SEPPMVSPLDTDLYKITMAYAVWKA-KPDERVVYKYTNRSNPFGGNYEAFNWLEEQIRFLANLKLTDEEID 71 (420)
T ss_pred CCCcccchhhhhHHHHHHHHHHHhh-CCCCceEEEeeecCCCCCchHHHHHHHHHHHHHHhhcCCCHHHHH
Confidence 5678999999999999999999997 999999999999999999999999999999999999999999986
No 3
>TIGR01513 NAPRTase_put putative nicotinate phosphoribosyltransferase. Most members of this family are Gram-positive bacteria. An additional set of mutually closely related archaeal sequences score between the trusted and noise cutoffs.
Probab=99.84 E-value=7.6e-22 Score=160.20 Aligned_cols=64 Identities=47% Similarity=0.881 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCcEEEEeecccCCCCCceEeeechHHHHHHHhcCCCCCCCCC
Q psy13801 23 WLCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQGEFTIFAGLEECIRFLENFRYSDSVPN 86 (88)
Q Consensus 23 ~LlTDlYelTMa~~Y~~~g~~~~~A~FdlFfRk~Pf~g~f~V~AGLe~vl~~l~n~rFs~edI~ 86 (88)
+|+||+||+||+|+||+.|+++++++||+|+|++||+|+|+|++||+++|++|+++||+++||+
T Consensus 1 ~l~TD~Y~ltM~~~~~~~~~~~~~~~fe~~~R~~p~~~~~~v~~GL~~~l~~L~~~~ft~eei~ 64 (443)
T TIGR01513 1 ALLTDLYELTMAQGYFREGKANQPAVFEVFFRKLPFGRGYAVFAGLEDLLEFLENFRFDAEDIE 64 (443)
T ss_pred CcchhHHHHHHHHHHHHhCCCCceEEEEEEECCCCCCcchhHHHHHHHHHHHHhcCCCCHHHHH
Confidence 4899999999999999999988889999999999999999999999999999999999999986
No 4
>PRK12484 nicotinate phosphoribosyltransferase; Provisional
Probab=99.83 E-value=2.9e-21 Score=156.69 Aligned_cols=64 Identities=42% Similarity=0.702 Sum_probs=60.7
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCCCcEEEEeecccCCCCCceEeeechHHHHHHHhcCCCCCCCCC
Q psy13801 22 FWLCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQGEFTIFAGLEECIRFLENFRYSDSVPN 86 (88)
Q Consensus 22 ~~LlTDlYelTMa~~Y~~~g~~~~~A~FdlFfRk~Pf~g~f~V~AGLe~vl~~l~n~rFs~edI~ 86 (88)
.+|+||+||+||+|+||++|++.+ ++||+|+|++|++++|+|+|||+++|++|++++|+++||+
T Consensus 4 ~~l~TD~Y~ltM~~~~~~~~~~~~-~~fe~~~R~~p~~~~~~v~aGl~~~l~~L~~~~ft~eei~ 67 (443)
T PRK12484 4 LALLTDLYEVTMANAYLREGMSAP-ATFSLFYRKLPDGRGFLIAAGLADVVEFLEAFRFDEQDLR 67 (443)
T ss_pred cchHHHHHHHHHHHHHHHhCCCCe-EEEEEEECCCCCCCceehHHHHHHHHHHHhcCCCCHHHHH
Confidence 479999999999999999998765 9999999999999999999999999999999999999985
No 5
>PRK09243 nicotinate phosphoribosyltransferase; Validated
Probab=99.80 E-value=2e-20 Score=152.33 Aligned_cols=67 Identities=43% Similarity=0.764 Sum_probs=63.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHcCCCCCcEEEEeecccCCCCCceEeeechHHHHHHHhcCCCCCCCCC
Q psy13801 20 IMFWLCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQGEFTIFAGLEECIRFLENFRYSDSVPN 86 (88)
Q Consensus 20 ~~~~LlTDlYelTMa~~Y~~~g~~~~~A~FdlFfRk~Pf~g~f~V~AGLe~vl~~l~n~rFs~edI~ 86 (88)
..++|+||+|++||+++||++|.++.+++|++|+|++|++++|+|+|||+++|++|+++|||++||+
T Consensus 7 ~~~~L~TD~Ykltm~~~~~~~~~~~~~~~f~~~~R~~p~~~~~~v~aGl~~~l~~L~~~~ft~~ei~ 73 (464)
T PRK09243 7 DSLALLTDLYELTMAQAYLRDGIHNRRAVFELFFRKLPFGRGYAVFAGLERLLEYLENLRFTEEDIE 73 (464)
T ss_pred cchHHHHHHHHHHHHHHHHHhCCCCcEEEEEEEEcCCCCCcchHHHHHHHHHHHHHHhCCCCHHHHH
Confidence 3458999999999999999999999999999999999999999999999999999999999999985
No 6
>PRK05321 nicotinate phosphoribosyltransferase; Provisional
Probab=99.80 E-value=2.8e-20 Score=149.87 Aligned_cols=63 Identities=21% Similarity=0.268 Sum_probs=57.9
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCCCCcEEEEeecccCC-CCCceEeeechHHHHHHHhcCCCCCCCCC
Q psy13801 21 MFWLCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNP-FQGEFTIFAGLEECIRFLENFRYSDSVPN 86 (88)
Q Consensus 21 ~~~LlTDlYelTMa~~Y~~~g~~~~~A~FdlFfRk~P-f~g~f~V~AGLe~vl~~l~n~rFs~edI~ 86 (88)
.+.|.||+||+||+|+||+.+ ++.+|+|++|+|++| |+++|++ ||+++|++|++|||+++||+
T Consensus 10 ~slLdTDlYklTM~~a~~~~~-~~~~~~f~~f~R~~~~~~~~~~~--gl~~~i~~l~~l~ft~eei~ 73 (400)
T PRK05321 10 RSLLDTDFYKLTMQQAVLHHY-PDAQVEYEFICRNDEVDLAEYID--EIREQLDHLCTLRLTDDELD 73 (400)
T ss_pred HHhHhhHHHHHHHHHHHHHhC-CCCeEEEEEEECCCCCcCchHHH--HHHHHHHHHHhCCCCHHHHH
Confidence 344569999999999999987 788899999999999 9999987 99999999999999999985
No 7
>cd01570 NAPRTase_A Nicotinate phosphoribosyltransferase (NAPRTase), subgroup A. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products. This subgroup is present in bacteria and eukaryota (except funghi).
Probab=99.79 E-value=3.5e-20 Score=144.58 Aligned_cols=64 Identities=56% Similarity=1.014 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCcEEEEeecccCCCCCceEeeechHHHHHHHhcCCCCCCCCC
Q psy13801 23 WLCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQGEFTIFAGLEECIRFLENFRYSDSVPN 86 (88)
Q Consensus 23 ~LlTDlYelTMa~~Y~~~g~~~~~A~FdlFfRk~Pf~g~f~V~AGLe~vl~~l~n~rFs~edI~ 86 (88)
+|+||+|++||+|+||++++++.+++|++|+|++|++++|+|++||+++|++|+++|||++||+
T Consensus 1 ~l~tD~Y~ltm~~~~~~~~~~~~~~~~~~~~R~~p~~~~~~v~~gl~~~l~~L~~l~~t~~ei~ 64 (327)
T cd01570 1 ALLTDLYQLTMAQAYWKEGKHNKPAVFELFFRKLPFGGGYAVFAGLEELLEYLENFRFTEEDID 64 (327)
T ss_pred CcchhHHHHHHHHHHHHcCCCCCeEEEEEEECCCCCCCcccHHHHHHHHHHHHhcCCCCHHHHH
Confidence 4899999999999999999789999999999999999999999999999999999999999985
No 8
>cd01401 PncB_like Nicotinate phosphoribosyltransferase (NAPRTase), related to PncB. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products. This subgroup is present in bacteria, archea and funghi.
Probab=99.75 E-value=4.2e-19 Score=142.21 Aligned_cols=62 Identities=27% Similarity=0.269 Sum_probs=57.8
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCCCcEEEEeecccCCC-CCceEeeechHHHHHHHhcCCCCCCCCC
Q psy13801 22 FWLCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPF-QGEFTIFAGLEECIRFLENFRYSDSVPN 86 (88)
Q Consensus 22 ~~LlTDlYelTMa~~Y~~~g~~~~~A~FdlFfRk~Pf-~g~f~V~AGLe~vl~~l~n~rFs~edI~ 86 (88)
+-|.||+||+||+|+||+.+++. +|+|++|+|++|+ .|+| ++||+++|++|++|||+++||+
T Consensus 2 slLdTDlYklTM~qa~~~~~~~~-~a~f~f~~R~~p~~~~~~--~~gl~~~i~~l~~l~ft~~el~ 64 (377)
T cd01401 2 SLLDTDLYKLTMQQAVLHHYPDV-QVTYEFTNRSPEDFLEEA--AEALREQIDHLANLRFSEEELA 64 (377)
T ss_pred cchhhHHHHHHHHHHHHHhCCCC-eEEEEEEECCCCCcchhH--HHHHHHHHHHHHhCCCCHHHHH
Confidence 35899999999999999998865 8999999999999 9999 8999999999999999999985
No 9
>TIGR01514 NAPRTase nicotinate phosphoribosyltransferase. This model represents nicotinate phosphoribosyltransferase, the first enzyme in the salvage pathway of NAD biosynthesis from nicontinate (niacin). Members are primary proteobacterial but also include yeasts and Methanosarcina acetivorans. A related family, apparently non-overlapping in species distribution, is TIGR01513. Members of that family differ in substantially in sequence and have a long C-terminal extension missing from this family, but are proposed also to act as nicotinate phosphoribosyltransferase (see model TIGR01513).
Probab=99.74 E-value=5.3e-19 Score=142.46 Aligned_cols=63 Identities=30% Similarity=0.387 Sum_probs=58.1
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCCCCcEEEEeecccCC-CCCceEeeechHHHHHHHhcCCCCCCCCC
Q psy13801 21 MFWLCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNP-FQGEFTIFAGLEECIRFLENFRYSDSVPN 86 (88)
Q Consensus 21 ~~~LlTDlYelTMa~~Y~~~g~~~~~A~FdlFfRk~P-f~g~f~V~AGLe~vl~~l~n~rFs~edI~ 86 (88)
.+.|.||+||+||+|+||+++ ++.+++|++|+|++| |.++|+ +||+++|++|++||||++||+
T Consensus 3 ~slLdTDlYklTM~qa~~~~~-~~~~~~f~f~~R~~p~~~~~~~--~gl~~~i~~l~~l~ft~eel~ 66 (394)
T TIGR01514 3 RSLLDTDLYKITMHQAVFHNF-PDVHVTYEFICRSSQLFLKEAA--EALREEISALGNLRFTDDEIE 66 (394)
T ss_pred ccchhhHHHHHHHHHHHHHhC-CCceEEEEEEECCCCCcchhHH--HHHHHHHHHHHHCCCCHHHHH
Confidence 467999999999999999987 688899999999999 877777 999999999999999999985
No 10
>COG1488 PncB Nicotinic acid phosphoribosyltransferase [Coenzyme metabolism]
Probab=99.64 E-value=6.8e-17 Score=130.09 Aligned_cols=67 Identities=45% Similarity=0.773 Sum_probs=63.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHcCCCCCcEEEEeecccCCCCCceEeeechHHHHHHHhcCCCCCCCCC
Q psy13801 20 IMFWLCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQGEFTIFAGLEECIRFLENFRYSDSVPN 86 (88)
Q Consensus 20 ~~~~LlTDlYelTMa~~Y~~~g~~~~~A~FdlFfRk~Pf~g~f~V~AGLe~vl~~l~n~rFs~edI~ 86 (88)
.-+.|.||+|++||+++||..+.++.+++|++|+|+.|++++|+++||++++|++|++|+|+++||+
T Consensus 11 i~~~L~TD~Ykltm~q~~~~~~~~~~~v~~e~~~R~~p~~~~~~~~~gl~~~l~~l~~l~fs~ee~~ 77 (405)
T COG1488 11 IKSLLDTDLYKLTMLQAYLHDGPNNVTVVFEFFFRKLPFLGGYAVFAGLEEVLELLENLRFSEEEIA 77 (405)
T ss_pred HhhhhHhHHHHHHHHHHHHhhCCCccEEEEEEEecCCcccchHHHHHHHHHHHHHHhhcCCCHHHHH
Confidence 5567999999999999999999888899999999999999999999999999999999999999864
No 11
>PRK09198 putative nicotinate phosphoribosyltransferase; Provisional
Probab=99.63 E-value=1.9e-16 Score=129.93 Aligned_cols=62 Identities=15% Similarity=0.188 Sum_probs=56.9
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCCCCcEEEEeecccCCCCCceEeeechHHHHH-HHhcCCCCCCCCCC
Q psy13801 21 MFWLCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQGEFTIFAGLEECIR-FLENFRYSDSVPNR 87 (88)
Q Consensus 21 ~~~LlTDlYelTMa~~Y~~~g~~~~~A~FdlFfRk~Pf~g~f~V~AGLe~vl~-~l~n~rFs~edI~~ 87 (88)
..+|+||+||+||++.|++ +.+++|++|+||+|++++|+|++||+++|+ ||+++ |+++||+.
T Consensus 6 ~~~L~TD~Yklth~~~Y~~----~~~~vf~~f~rr~p~~~~~~v~~GL~~~l~~yl~~~-ft~~~i~~ 68 (463)
T PRK09198 6 NPILNTDSYKASHRLQYPP----GTTYLYSYLESRSGGRYDKVVFFGLQYFLKEYLIQP-ITEAFIDE 68 (463)
T ss_pred chhHhHhhHHHHHHHhccC----CCcEEEEEEEEeCCCCCCeEEEEEHHHHHHHHHHhc-CCHHHHHH
Confidence 3469999999999999976 348999999999999999999999999998 99999 99999863
No 12
>cd01567 NAPRTase_PncB Nicotinate phosphoribosyltransferase (NAPRTase) family. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=99.50 E-value=8.9e-15 Score=113.42 Aligned_cols=62 Identities=44% Similarity=0.801 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCcEEEEeecccCCCCCceEeeechHHHHHHHhcCCCCCCCCC
Q psy13801 24 LCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQGEFTIFAGLEECIRFLENFRYSDSVPN 86 (88)
Q Consensus 24 LlTDlYelTMa~~Y~~~g~~~~~A~FdlFfRk~Pf~g~f~V~AGLe~vl~~l~n~rFs~edI~ 86 (88)
|.||+|++||+++|++ +..+.+++|++|+|+.|++++|.|++||+++|++|++++|+++||+
T Consensus 2 L~TD~Yk~tm~~~~~~-~~~~~~v~~~~~~R~~~~~~~~~v~~gl~~~l~~l~~~~~~~~~~~ 63 (343)
T cd01567 2 LDTDLYKLTMMQAYLY-PYPNTRVVFEFTFRSNPFGGDYIVFAGLEEVLKLLENLRFTEEEIE 63 (343)
T ss_pred ccchHHHHHHHHHHHh-CCCCeEEEEEEEEcCCCCCCCeeHHHHHHHHHHHHHhCCCCHHHHH
Confidence 7899999999999955 8888899999999999999999999999999999999999999876
No 13
>PHA02594 nadV nicotinamide phosphoribosyl transferase; Provisional
Probab=99.41 E-value=1.4e-13 Score=113.35 Aligned_cols=61 Identities=23% Similarity=0.251 Sum_probs=55.9
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCCCcEEEEeecccCCCCCceEeeechHHHHHH-HhcCCCCCCCCCC
Q psy13801 22 FWLCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQGEFTIFAGLEECIRF-LENFRYSDSVPNR 87 (88)
Q Consensus 22 ~~LlTDlYelTMa~~Y~~~g~~~~~A~FdlFfRk~Pf~g~f~V~AGLe~vl~~-l~n~rFs~edI~~ 87 (88)
..|+||.||+||++.||+. .+.++|++|+|++||. +|+||+||+.+|++ +.+ +|+++||+.
T Consensus 10 ~~L~tD~Yk~th~~qYp~~---~~~~~~~~~~R~~~~~-~~~vf~GLq~~i~~~l~~-~~t~~~i~~ 71 (470)
T PHA02594 10 IILMTDSYKLSHWSQYPKG---TDYVMFYLEPRGGKFF-DKVVVFGIQYFVKKYFFE-PITMEVVEE 71 (470)
T ss_pred hhHhhhhhHHHHHHhCCCC---CcEEEEEEEecCCCCC-CEEEEeeHHHHHHHHHhc-CCCHHHHHH
Confidence 4599999999999999994 6679999999999997 89999999999997 999 999999863
No 14
>cd01569 PBEF_like pre-B-cell colony-enhancing factor (PBEF)-like. The mammalian members of this group of nicotinate phosphoribosyltransferases (NAPRTases) were originally identified as genes whose expression is upregulated upon activation in lymphoid cells. In general, nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis.
Probab=99.30 E-value=1.8e-12 Score=105.36 Aligned_cols=59 Identities=20% Similarity=0.232 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCcEEEEeecccCCCCCceEeeechHHHHHHHhcCCCCCCC-CC
Q psy13801 24 LCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQGEFTIFAGLEECIRFLENFRYSDSV-PN 86 (88)
Q Consensus 24 LlTDlYelTMa~~Y~~~g~~~~~A~FdlFfRk~Pf~g~f~V~AGLe~vl~~l~n~rFs~ed-I~ 86 (88)
|+||+||+||.+.|++ |. +++|+.|.||.|.+++|+|++||+.+|+++++.+|++++ |+
T Consensus 2 L~TD~Yk~th~~qYp~-gt---~~vfs~f~~R~~~~~~~~v~~GLq~~l~~~l~~~f~~~~~i~ 61 (407)
T cd01569 2 LATDSYKVSHRLQYPP-GT---TAVYSYLEPRGGKYYDQTVFFGLQYFLKKYLIDPVNRDFFID 61 (407)
T ss_pred cccchHHHHHHHhccC-CC---ceEEEEEEecCCCCCCeEEEeeHHHHHHHHHhcCCCHHHhHH
Confidence 7899999999999999 44 699999999999889999999999999999999999998 65
No 15
>PRK08662 nicotinate phosphoribosyltransferase; Reviewed
Probab=99.06 E-value=4.4e-10 Score=88.93 Aligned_cols=60 Identities=30% Similarity=0.350 Sum_probs=55.4
Q ss_pred cchhhHHHHHHHHHHHHHHHHHcCCCCCcEEEEeecccCCCCCceEeeechHHHHHHHhcCC
Q psy13801 18 LCIMFWLCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQGEFTIFAGLEECIRFLENFR 79 (88)
Q Consensus 18 ~~~~~~LlTDlYelTMa~~Y~~~g~~~~~A~FdlFfRk~Pf~g~f~V~AGLe~vl~~l~n~r 79 (88)
..+...|.||+|+.+|++++|+.|. +..+++++|.||+| +|++.|+||++.+.+.++++.
T Consensus 10 ~~~~~~l~~D~Y~~~t~~~l~~~g~-~~~~~~~i~~R~~p-~~~~~i~aG~~~a~~~~~~~~ 69 (343)
T PRK08662 10 EEIKSGKTTDIYFERTVEILEHAGK-NPKVVAEVTASSLP-KGEWGVFAGLEEVLELLEGKP 69 (343)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHcCC-CCeEEEEEEEecCC-CCCCEEEccHHHHHHHHhhCC
Confidence 3466789999999999999999998 88899999999999 999999999999999998764
No 16
>cd00516 PRTase_typeII Phosphoribosyltransferase (PRTase) type II; This family contains two enzymes that play an important role in NAD production by either allowing quinolinic acid (QA) , quinolinate phosphoribosyl transferase (QAPRTase), or nicotinic acid (NA), nicotinate phosphoribosyltransferase (NAPRTase), to be used in the synthesis of NAD. QAPRTase catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide, an important step in the de novo synthesis of NAD. NAPRTase catalyses a similar reaction leading to NAMN and pyrophosphate, using nicotinic acid an PPRP as substrates, used in the NAD salvage pathway.
Probab=97.54 E-value=0.00019 Score=53.77 Aligned_cols=47 Identities=36% Similarity=0.636 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHcCCCCCcEEEEeecccCCCCCceEeeechHHHHHHHhcCCC
Q psy13801 27 DLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQGEFTIFAGLEECIRFLENFRY 80 (88)
Q Consensus 27 DlYelTMa~~Y~~~g~~~~~A~FdlFfRk~Pf~g~f~V~AGLe~vl~~l~n~rF 80 (88)
|+|.++|.+. + ...+.++.+.++.|+.| +.|+||++.+++.++.++|
T Consensus 1 D~y~~~~~~~--~-~~~~~~~~~~~~~R~~~----~~v~~Gl~~~~~~l~~l~~ 47 (281)
T cd00516 1 DLYKLTMIQA--Y-PPPDTRATAEFTAREDP----YGVLAGLEEALELLELLRF 47 (281)
T ss_pred ChhHHHHHhh--h-CCCCCEEEEEEEEecCC----CEEEcCHHHHHHHHHhcCC
Confidence 8999999988 3 45577899999999987 8999999999999999974
No 17
>PRK07188 nicotinate phosphoribosyltransferase; Provisional
Probab=95.91 E-value=0.03 Score=45.14 Aligned_cols=60 Identities=18% Similarity=0.202 Sum_probs=46.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHcCCCCCcEEEEeecccCCCCCceEeeechHHHHHHHhcCCCCCCCC
Q psy13801 20 IMFWLCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQGEFTIFAGLEECIRFLENFRYSDSVP 85 (88)
Q Consensus 20 ~~~~LlTDlYelTMa~~Y~~~g~~~~~A~FdlFfRk~Pf~g~f~V~AGLe~vl~~l~n~rFs~edI 85 (88)
+-....||-|=+.--...-+ ...+.++++++|.|+.+ .|+||+++++++++.++++++++
T Consensus 13 i~~g~~td~YF~~t~~il~~-~~~~~~~~~~~~~R~~~-----~VlaGleea~~ll~~l~~~~~~~ 72 (352)
T PRK07188 13 IGEGWYSAVYFLKTREIIEK-FNPNNIVTMQFFQRREN-----AVLCGTDEVIALLKTFAKDPSKL 72 (352)
T ss_pred HhcCchhHHHHHHHHHHHHH-hCCCCeEEEEEEEeCCC-----eEEecHHHHHHHHHHcCCCccce
Confidence 44567899998755445444 44577899999998644 99999999999999999987644
No 18
>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=95.35 E-value=0.03 Score=43.70 Aligned_cols=49 Identities=22% Similarity=0.433 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHcCCCCCcEEEEeecccCCCCCceEeeechHHHHHHHhcC
Q psy13801 25 CTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQGEFTIFAGLEECIRFLENF 78 (88)
Q Consensus 25 lTDlYelTMa~~Y~~~g~~~~~A~FdlFfRk~Pf~g~f~V~AGLe~vl~~l~n~ 78 (88)
.||-|=.--- --++...++..+++++|.|+.| |.|+||++.++++++.+
T Consensus 3 ~~~~yf~~t~-~~~~~~~~~~~~~~~i~~r~~~----~~v~aG~~~~~~~~~~~ 51 (302)
T cd01571 3 FTDVYFLRTR-KILEKKGPNPTVTMEFTQRSLP----WAVLCGLEEVLALLEGL 51 (302)
T ss_pred chHHHHHHHH-HHHHHhCCCCeEEEEEEEEcCc----hHHHhhHHHHHHHHhCC
Confidence 3555543333 3445466788899999999999 99999999999999875
No 19
>PF08225 Antimicrobial19: Pseudin antimicrobial peptide; InterPro: IPR013156 Pseudins are a subfamily of the FSAP family (Frog Secreted Active Peptides) extracted from the skin of the paradoxical frog Pseudis paradoxa (Paradoxical frog). The pseudins belong to the class of cationic, amphipathic-helical antimicrobial peptides [].; GO: 0006952 defense response
Probab=37.92 E-value=12 Score=19.67 Aligned_cols=14 Identities=43% Similarity=0.968 Sum_probs=11.6
Q ss_pred eeechHHHHHHHhc
Q psy13801 64 IFAGLEECIRFLEN 77 (88)
Q Consensus 64 V~AGLe~vl~~l~n 77 (88)
|+.||.++|..+.|
T Consensus 8 v~qglhe~ikli~n 21 (23)
T PF08225_consen 8 VFQGLHEVIKLINN 21 (23)
T ss_pred HHHHHHHHHHHHhc
Confidence 56799999998876
No 20
>PRK15468 carboxysome structural protein EutS; Provisional
Probab=24.87 E-value=96 Score=21.88 Aligned_cols=30 Identities=20% Similarity=0.434 Sum_probs=23.1
Q ss_pred CCCceEeeec-------hHHHHHHHhc-CCCCCCCCCC
Q psy13801 58 FQGEFTIFAG-------LEECIRFLEN-FRYSDSVPNR 87 (88)
Q Consensus 58 f~g~f~V~AG-------Le~vl~~l~n-~rFs~edI~~ 87 (88)
|.|.-.|..+ |+++++++++ ++|+..+|-|
T Consensus 73 FsGslvitGdvs~Ve~Al~~V~~~l~~~L~F~~~~iTr 110 (111)
T PRK15468 73 FSGALVIYGSVGAVEEALSQTVSGLGRLLNYTLCEMTK 110 (111)
T ss_pred cceeEEEEccHHHHHHHHHHHHHHHHhhcCcccccccc
Confidence 6777666554 5668999999 9999888765
No 21
>PF06062 UPF0231: Uncharacterised protein family (UPF0231); InterPro: IPR008249 The proteins in this entry are functionally uncharacterised.
Probab=24.35 E-value=31 Score=24.09 Aligned_cols=17 Identities=35% Similarity=0.700 Sum_probs=14.1
Q ss_pred EeeechHHHHHHHhcCC
Q psy13801 63 TIFAGLEECIRFLENFR 79 (88)
Q Consensus 63 ~V~AGLe~vl~~l~n~r 79 (88)
.-+|||++.+..|++.+
T Consensus 101 ~A~CGleDF~~~L~~w~ 117 (121)
T PF06062_consen 101 IAFCGLEDFEHLLESWQ 117 (121)
T ss_pred eeccCHHHHHHHHHHHH
Confidence 47899999999998753
No 22
>PF08519 RFC1: Replication factor RFC1 C terminal domain; InterPro: IPR013725 This is the C-terminal domain of replication factor C, RFC1. RFC complexes hydrolyse ATP and load sliding clamps such as PCNA (proliferating cell nuclear antigen) onto double-stranded DNA. RFC1 is essential for RFC function in vivo [, ]. ; GO: 0003689 DNA clamp loader activity, 0005524 ATP binding, 0006260 DNA replication, 0005663 DNA replication factor C complex; PDB: 1SXJ_A.
Probab=23.28 E-value=27 Score=24.95 Aligned_cols=21 Identities=14% Similarity=0.428 Sum_probs=0.0
Q ss_pred chHHHHHHHhcCCCCCCCCCC
Q psy13801 67 GLEECIRFLENFRYSDSVPNR 87 (88)
Q Consensus 67 GLe~vl~~l~n~rFs~edI~~ 87 (88)
|+++||+++.....+.||+|.
T Consensus 104 ~v~~vi~~Md~Y~Ltred~d~ 124 (155)
T PF08519_consen 104 GVDEVIDLMDEYGLTREDWDN 124 (155)
T ss_dssp ---------------------
T ss_pred cHHHHHHHHHHhCCCHHHHHH
Confidence 899999999999999999863
No 23
>PF02749 QRPTase_N: Quinolinate phosphoribosyl transferase, N-terminal domain; InterPro: IPR022412 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0016763 transferase activity, transferring pentosyl groups; PDB: 3L0G_B 1QAP_A 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 2I14_C 1X1O_B 2B7Q_B ....
Probab=20.83 E-value=2.3e+02 Score=17.83 Aligned_cols=31 Identities=23% Similarity=0.386 Sum_probs=23.3
Q ss_pred CCCCcEEEEeecccCCCCCceEeeechHHHHHHHhcC
Q psy13801 42 KVTDNAVFDLFFRQNPFQGEFTIFAGLEECIRFLENF 78 (88)
Q Consensus 42 ~~~~~A~FdlFfRk~Pf~g~f~V~AGLe~vl~~l~n~ 78 (88)
..+..+...++-|. | .|+||++.+-+.++.+
T Consensus 13 ~~~~~~~a~i~are-~-----gV~aG~~~~~~i~~~l 43 (88)
T PF02749_consen 13 PPDKTGTATIIARE-D-----GVLAGLEEAEEIFEKL 43 (88)
T ss_dssp CTTSEEEEEEEESS-S-----EEE-SHHHHHHHHHHC
T ss_pred CCCCEEEEEEEeCC-C-----EEEECHHHHHHHHhhc
Confidence 34567888888886 4 7999999988887765
Done!