Query psy13801
Match_columns 88
No_of_seqs 119 out of 725
Neff 4.1
Searched_HMMs 29240
Date Fri Aug 16 20:51:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13801.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13801hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hl7_A Naprtase, nicotinate ph 99.8 1.1E-20 3.9E-25 152.7 0.7 64 20-86 13-76 (446)
2 3os4_A Naprtase, nicotinate ph 99.8 7.4E-20 2.5E-24 146.1 1.4 64 20-86 9-72 (407)
3 2f7f_A Nicotinate phosphoribos 99.7 6.2E-19 2.1E-23 143.1 2.5 65 22-86 10-74 (494)
4 1yir_A Naprtase 2, nicotinate 99.7 6.4E-19 2.2E-23 140.1 1.5 73 9-86 2-76 (408)
5 1ybe_A Naprtase, nicotinate ph 99.7 3E-18 1E-22 137.9 0.9 66 20-86 28-94 (449)
6 2im5_A Nicotinate phosphoribos 99.7 5.5E-18 1.9E-22 134.2 0.1 61 22-86 6-68 (394)
7 1vlp_A Naprtase, nicotinate ph 99.7 9.6E-18 3.3E-22 134.7 0.6 64 20-86 18-83 (441)
8 2i14_A Nicotinate-nucleotide p 99.5 1.8E-14 6.1E-19 113.9 4.6 63 16-79 14-76 (395)
9 3dhf_A Nicotinamide phosphorib 99.4 1.4E-14 4.8E-19 117.8 -2.2 61 22-86 11-81 (484)
10 2i1o_A Nicotinate phosphoribos 99.3 5.7E-13 1.9E-17 105.5 3.2 61 16-79 14-74 (398)
11 2b7n_A Probable nicotinate-nuc 92.2 0.13 4.5E-06 38.3 3.8 31 43-79 27-57 (273)
12 3c2e_A Nicotinate-nucleotide p 91.0 0.18 6.2E-06 38.1 3.5 30 44-79 37-66 (294)
13 2jbm_A Nicotinate-nucleotide p 91.0 0.19 6.4E-06 38.1 3.6 30 44-79 41-70 (299)
14 1mxg_A Alpha amylase; hyperthe 40.0 8.9 0.00031 29.3 1.0 36 44-81 8-43 (435)
15 2cos_A Serine/threonine protei 34.8 17 0.00057 21.8 1.4 18 66-83 36-53 (54)
16 2zvv_Y Cyclin-dependent kinase 25.2 22 0.00076 18.4 0.7 7 24-30 8-14 (26)
No 1
>4hl7_A Naprtase, nicotinate phosphoribosyltransferase; structural genomics, protein structure initiative; 1.80A {Vibrio cholerae}
Probab=99.78 E-value=1.1e-20 Score=152.65 Aligned_cols=64 Identities=22% Similarity=0.236 Sum_probs=59.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHcCCCCCcEEEEeecccCCCCCceEeeechHHHHHHHhcCCCCCCCCC
Q psy13801 20 IMFWLCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQGEFTIFAGLEECIRFLENFRYSDSVPN 86 (88)
Q Consensus 20 ~~~~LlTDlYelTMa~~Y~~~g~~~~~A~FdlFfRk~Pf~g~f~V~AGLe~vl~~l~n~rFs~edI~ 86 (88)
+.++|+||+|||||+|+||+.+ ++.+++||+|+|++|++|+|+ |||+++|++|++||||++||+
T Consensus 13 I~s~L~TDlYkltM~qa~~~~~-~~~~v~fe~f~R~~p~~~~~~--agL~~~l~~L~~l~ft~eei~ 76 (446)
T 4hl7_A 13 IRSLLDLDAYKINMMQAIHHFY-PDVSVRYELIVRSEEDASGLL--DAIRQEIAHLGTLRFSDADIH 76 (446)
T ss_dssp SCSTTSSBHHHHHHHHHHHHHC-TTCEEEEEEEEESCTTTHHHH--HHHHHHHHHGGGCCCCHHHHH
T ss_pred hchhHHHHHHHHHHHHHHHHhC-CCCeEEEEEEECCCCCchhHH--HHHHHHHHHHHhCCCCHHHHH
Confidence 4578999999999999999998 588999999999999999995 999999999999999999975
No 2
>3os4_A Naprtase, nicotinate phosphoribosyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel; HET: MSE; 1.60A {Yersinia pestis}
Probab=99.76 E-value=7.4e-20 Score=146.11 Aligned_cols=64 Identities=13% Similarity=0.191 Sum_probs=57.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHcCCCCCcEEEEeecccCCCCCceEeeechHHHHHHHhcCCCCCCCCC
Q psy13801 20 IMFWLCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQGEFTIFAGLEECIRFLENFRYSDSVPN 86 (88)
Q Consensus 20 ~~~~LlTDlYelTMa~~Y~~~g~~~~~A~FdlFfRk~Pf~g~f~V~AGLe~vl~~l~n~rFs~edI~ 86 (88)
+.+.|.||+||+||+|+||+++. +.+++||+|+|++|+.|+| +|||+++|++|++|||+++||+
T Consensus 9 i~s~L~TDlY~ltM~~a~~~~~~-~~~v~fe~f~R~~~~~~~~--~agl~~~l~~l~~l~ft~~ei~ 72 (407)
T 3os4_A 9 LTSLLDTDAYKLHMQQAVFHHYR-HITVAAEFRCRSDELLGVY--ADEIRHQVTLMGQLALTSDEFI 72 (407)
T ss_dssp CCCTTSSBHHHHHHHHHHHHHCT-TCEEEEEEEECSSCCCGGG--HHHHHHHHHHHTTCCCCHHHHH
T ss_pred hccchhhhhHHHHHHHHHHHhCC-CCeEEEEEEEcCCCchhhH--HHHHHHHHHHHHhCCCCHHHHH
Confidence 34567799999999999999987 8889999999999977766 4999999999999999999875
No 3
>2f7f_A Nicotinate phosphoribosyltransferase, putative; structural genomics, PSI; 2.00A {Enterococcus faecalis} SCOP: c.1.17.1 d.41.2.1
Probab=99.73 E-value=6.2e-19 Score=143.06 Aligned_cols=65 Identities=42% Similarity=0.817 Sum_probs=62.4
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCCCcEEEEeecccCCCCCceEeeechHHHHHHHhcCCCCCCCCC
Q psy13801 22 FWLCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQGEFTIFAGLEECIRFLENFRYSDSVPN 86 (88)
Q Consensus 22 ~~LlTDlYelTMa~~Y~~~g~~~~~A~FdlFfRk~Pf~g~f~V~AGLe~vl~~l~n~rFs~edI~ 86 (88)
+.|+||+|++||+++||+.|.++.+++|++|+|++|++++|+|+|||+++++++++++|+++||+
T Consensus 10 ~~L~TD~Ykltm~~~~~~~g~~~~~~~f~~~~R~~p~~~~~~v~aGl~~~l~~l~~l~ft~~ei~ 74 (494)
T 2f7f_A 10 LTLHTDMYQINMMQTYWELGRADLHAVFECYFREMPFNHGYAIFAGLERLVNYLENLTFTESDIA 74 (494)
T ss_dssp STTCSCHHHHHHHHHHHHTTCTTCEEEEEEECSSCGGGCSCEECCCHHHHHHHHHTCCCCHHHHH
T ss_pred cchhcchhHHHHHHHHHHhCCCCCEEEEEEEECCCCCCCceEehHhHHHHHHHHHhCCCCHHHHH
Confidence 56999999999999999999999999999999999999999999999999999999999999875
No 4
>1yir_A Naprtase 2, nicotinate phosphoribosyltransferase 2; structural genomics, protein structure initiative, hypothetical protein, NYSGXRC, PSI; 2.10A {Pseudomonas aeruginosa} SCOP: c.1.17.2 d.41.2.2
Probab=99.72 E-value=6.4e-19 Score=140.06 Aligned_cols=73 Identities=21% Similarity=0.259 Sum_probs=61.6
Q ss_pred ccccccccccc-hhhHHHHHHHHHHHHHHHHHcCCCCCcEEEEeecccCCCC-CceEeeechHHHHHHHhcCCCCCCCCC
Q psy13801 9 SMEASAVNMLC-IMFWLCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQ-GEFTIFAGLEECIRFLENFRYSDSVPN 86 (88)
Q Consensus 9 ~~~~~~~~~~~-~~~~LlTDlYelTMa~~Y~~~g~~~~~A~FdlFfRk~Pf~-g~f~V~AGLe~vl~~l~n~rFs~edI~ 86 (88)
||.++.. ++| +.+.|.||+|++||+|+||+.+. +.+++|++|+|+ ||+ ++| +|||+++|++|++++|+++||+
T Consensus 2 ~~~~~~~-~~~iI~~~L~TD~YkltM~~~~~~~~~-~~~~~f~~~~R~-~~~~~~~--~~GL~~~l~~l~~~~ft~~ei~ 76 (408)
T 1yir_A 2 SLAESAF-SERIVQNLLDTDFYKLTMMQAVLHNYP-NAEVEWEFRCRN-QEDLRLY--LPAIREQLEYLAGLAISDEQLA 76 (408)
T ss_dssp -CCCBSC-CSCSSCSTTSSBHHHHHHHHHHHHHCT-TCEEEEEEEETT-CCCCGGG--HHHHHHHHHHHHHCCCCHHHHH
T ss_pred CCChhhh-cchHHHhHHHHHHHHHHHHHHHHHhCC-CCEEEEEEEecC-CCCcccH--HHHHHHHHHHHHhCCCCHHHHH
Confidence 5555554 223 44567899999999999999987 888999999999 997 778 8999999999999999999985
No 5
>1ybe_A Naprtase, nicotinate phosphoribosyltransferase; structural genomics, protein structure initiative, NYSGXRC, PSI; 2.50A {Agrobacterium tumefaciens} SCOP: c.1.17.2 d.41.2.2
Probab=99.68 E-value=3e-18 Score=137.89 Aligned_cols=66 Identities=23% Similarity=0.236 Sum_probs=61.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHcCCCCCcEEEEeecccCCC-CCceEeeechHHHHHHHhcCCCCCCCCC
Q psy13801 20 IMFWLCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPF-QGEFTIFAGLEECIRFLENFRYSDSVPN 86 (88)
Q Consensus 20 ~~~~LlTDlYelTMa~~Y~~~g~~~~~A~FdlFfRk~Pf-~g~f~V~AGLe~vl~~l~n~rFs~edI~ 86 (88)
+.+.|.||+|++||+|+||+.+.+. +++|++|+|++|+ +++|+|+|||+++|++|++++|+++||+
T Consensus 28 i~s~L~TD~YkltM~~~~~~~~p~~-~v~f~~~~R~~p~~~~~~~v~aGL~~~l~~l~~~~ft~eei~ 94 (449)
T 1ybe_A 28 VRSLIDTDFYKLLMLQMIWKLYPEV-DATFSLINRTKTVRLAEEIDEMELREQLDHARTLRLSKKENI 94 (449)
T ss_dssp CCCTTCSBHHHHHHHHHHHHHCTTC-BEEEEEEESCCSSCSTTTSCHHHHHHHHHHHTTCCCCHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHhCCCC-eEEEEEEECCCCccCcchhHHHHHHHHHHHHHhCCCCHHHHH
Confidence 4467999999999999999998755 5999999999999 8999999999999999999999999875
No 6
>2im5_A Nicotinate phosphoribosyltransferase; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.20A {Porphyromonas gingivalis}
Probab=99.66 E-value=5.5e-18 Score=134.18 Aligned_cols=61 Identities=25% Similarity=0.238 Sum_probs=56.1
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCCCcEEEEeecccCCCCCce-E-eeechHHHHHHHhcCCCCCCCCC
Q psy13801 22 FWLCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQGEF-T-IFAGLEECIRFLENFRYSDSVPN 86 (88)
Q Consensus 22 ~~LlTDlYelTMa~~Y~~~g~~~~~A~FdlFfRk~Pf~g~f-~-V~AGLe~vl~~l~n~rFs~edI~ 86 (88)
+.|.||+|++||+|+||+.+. +.+++|++|+|+ |+ +| . |++||+++|++|++++|+++||+
T Consensus 6 ~~L~TD~Ykltm~~~~~~~~~-~~~v~f~~~~R~-~~--~~~~~v~~gL~~~l~~l~~~~ft~~ei~ 68 (394)
T 2im5_A 6 SILDTDLYKFTTGYAYAKLFP-RAYGEFRFIDRN-RQ--GFTEEFAELVRGEIRAMAALSLTRDEKE 68 (394)
T ss_dssp CTTCSBHHHHHHHHHHHHHCT-TCEEEEEEEETT-CC--CCCHHHHHHHHHHHHHGGGCCCCHHHHH
T ss_pred hhHHHHhhHHHHHHHHHHhCC-CCEEEEEEEeCC-CC--chhhHHHHHHHHHHHHHHcCCCCHHHHH
Confidence 457799999999999999998 889999999999 76 57 6 89999999999999999999985
No 7
>1vlp_A Naprtase, nicotinate phosphoribosyltransferase; structural genomics, joint center for structural genomics; HET: MSE MES; 1.75A {Saccharomyces cerevisiae} SCOP: c.1.17.2 d.41.2.2
Probab=99.65 E-value=9.6e-18 Score=134.66 Aligned_cols=64 Identities=25% Similarity=0.303 Sum_probs=58.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHcCCCCCcEEEEeecccCCCCCce--EeeechHHHHHHHhcCCCCCCCCC
Q psy13801 20 IMFWLCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQGEF--TIFAGLEECIRFLENFRYSDSVPN 86 (88)
Q Consensus 20 ~~~~LlTDlYelTMa~~Y~~~g~~~~~A~FdlFfRk~Pf~g~f--~V~AGLe~vl~~l~n~rFs~edI~ 86 (88)
+.+.|.||+|++||+|+||+.+.+ .+++|++|+|+ |++ +| .|++||+++|++|++++|+++||+
T Consensus 18 i~s~L~TD~YkltM~~a~~~~~~~-~~~~f~~~~R~-p~~-~~~~~v~~GL~~~l~~l~~l~ft~eei~ 83 (441)
T 1vlp_A 18 IKSLLDTDMYKITMHAAVFTNFPD-VTVTYKYTNRS-SQL-TFNKEAINWLKEQFSYLGNLRFTEEEIE 83 (441)
T ss_dssp CCCTTSSBHHHHHHHHHHHHHCTT-CEEEEEEEESC-TTC-CBCHHHHHHHHHHHHHGGGCCCCHHHHH
T ss_pred hhhhhhhHHHHHHHHHHHHHhCCC-CEEEEEEEEeC-CCc-cchHHHHHHHHHHHHHHHhCCCCHHHHH
Confidence 556799999999999999999886 56999999988 877 89 899999999999999999999985
No 8
>2i14_A Nicotinate-nucleotide pyrophosphorylase; ligand binding, phosphoribosylpyrophosphate, Zn metal ION, structural genomics, PSI; HET: PCP; 2.90A {Pyrococcus furiosus} SCOP: c.1.17.1 d.41.2.1
Probab=99.48 E-value=1.8e-14 Score=113.86 Aligned_cols=63 Identities=19% Similarity=0.163 Sum_probs=58.6
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHcCCCCCcEEEEeecccCCCCCceEeeechHHHHHHHhcCC
Q psy13801 16 NMLCIMFWLCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQGEFTIFAGLEECIRFLENFR 79 (88)
Q Consensus 16 ~~~~~~~~LlTDlYelTMa~~Y~~~g~~~~~A~FdlFfRk~Pf~g~f~V~AGLe~vl~~l~n~r 79 (88)
+++.+..+|.||+|++||+++||+.|. +.+++|++|+|++|++++|.|+||+++++++++++.
T Consensus 14 ~~~~I~~~L~tD~Y~~tm~~~~~~~g~-~~~~~~~~~~R~~p~~~~~~v~aGl~~~~~~l~~~~ 76 (395)
T 2i14_A 14 NEDEIKAGKTTDVYFLRTKKILEVKNI-RKKVLADVTTTSLPNNWRWGVLVGVEEVAKLLEGIP 76 (395)
T ss_dssp CHHHHHHTTTSBHHHHHHHHHHHHTTC-CCEEEEEEECSCCGGGCSCEECCCHHHHHHHHTTSS
T ss_pred CHHHHHHHHHhhchHHHHHHHHHHhCC-CCeEEEEEEEcCCCCCCCceEeccHHHHHHHHhCCC
Confidence 566688899999999999999999998 889999999999999999999999999999999753
No 9
>3dhf_A Nicotinamide phosphoribosyltransferase; NMPRTASE, NAMPRTASE, visfatin, beryllium fluoride, nicotinamide D-ribonucleotide, pyrophosphate; HET: NMN; 1.80A {Homo sapiens} PDB: 3dgr_A* 3dhd_A* 3dkj_A* 3dkl_A* 2gvj_A* 2gvg_A* 2e5b_A 2e5c_A* 2e5d_A 2h3d_A* 2gvl_A 2h3b_A 2g95_A 2g96_A* 2g97_A* 3g8e_A*
Probab=99.38 E-value=1.4e-14 Score=117.84 Aligned_cols=61 Identities=23% Similarity=0.321 Sum_probs=53.2
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCCCcEEEEeecccCC---------CCCceEeeechHHHH-HHHhcCCCCCCCCC
Q psy13801 22 FWLCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNP---------FQGEFTIFAGLEECI-RFLENFRYSDSVPN 86 (88)
Q Consensus 22 ~~LlTDlYelTMa~~Y~~~g~~~~~A~FdlFfRk~P---------f~g~f~V~AGLe~vl-~~l~n~rFs~edI~ 86 (88)
..|+||+|++||.+.|.+ +.+++|+.|+||.| |+++|+|+|||+++| +||++++|+++||+
T Consensus 11 ~~L~tD~YK~th~~~Yp~----~~~~v~s~f~~R~~~~~~~~~~~~~~~~~v~~GL~~~l~~~l~~~~ft~~di~ 81 (484)
T 3dhf_A 11 ILLATDSYKVTHYKQYPP----NTSKVYSYFECREKKTENSKLRKVKYEETVFYGLQYILNKYLKGKVVTKEKIQ 81 (484)
T ss_dssp GGGSSBGGGGGGGGTSCT----TEEEEEEEEEECC------------CCEEECCCHHHHHHHHTSSCCCCHHHHH
T ss_pred hhhhhHhHHHHHHHhccC----CCeEEEEEEEEcCCCccccccccccCCeeeeHHHHHHHHHHHHhCCCCHHHHH
Confidence 479999999999999953 44799999999998 388999999999999 89999999999985
No 10
>2i1o_A Nicotinate phosphoribosyltransferase; ZIN ION, zinc finger M structural genomics, PSI, protein structure initiative; 2.40A {Thermoplasma acidophilum} PDB: 1ytd_A* 1yte_A* 1ytk_A
Probab=99.31 E-value=5.7e-13 Score=105.52 Aligned_cols=61 Identities=18% Similarity=0.145 Sum_probs=56.3
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHcCCCCCcEEEEeecccCCCCCceEeeechHHHHHHHhcCC
Q psy13801 16 NMLCIMFWLCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQGEFTIFAGLEECIRFLENFR 79 (88)
Q Consensus 16 ~~~~~~~~LlTDlYelTMa~~Y~~~g~~~~~A~FdlFfRk~Pf~g~f~V~AGLe~vl~~l~n~r 79 (88)
|+..+..+|.||+|++||+++||+.|. +.+++|++|+|++|+ +|.|+||+++++++++++.
T Consensus 14 ~~~~I~~~L~tD~Y~~tm~~~~~~~~~-~~~~~~~~~~R~~p~--~~~v~aGl~~~~~~l~~~~ 74 (398)
T 2i1o_A 14 SDEDIKKGLASDVYFERTISAIGDKCN-DLRVAMEATVSGPLD--TWINFTGLDEVLKLLEGLD 74 (398)
T ss_dssp CHHHHHHTCSSCTHHHHHHHHHGGGGG-GCEEEEEEEECSCCS--SCEECCCHHHHHHHHTTSS
T ss_pred CHHHHHHHHHhhhhHHHHHHHHHHhCC-CCeEEEEEEECCCCC--cceEEcCHHHHHHHHhhCC
Confidence 566778899999999999999999988 888999999999998 8999999999999999754
No 11
>2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid, HELI pylori, transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A*
Probab=92.18 E-value=0.13 Score=38.26 Aligned_cols=31 Identities=19% Similarity=0.091 Sum_probs=27.7
Q ss_pred CCCcEEEEeecccCCCCCceEeeechHHHHHHHhcCC
Q psy13801 43 VTDNAVFDLFFRQNPFQGEFTIFAGLEECIRFLENFR 79 (88)
Q Consensus 43 ~~~~A~FdlFfRk~Pf~g~f~V~AGLe~vl~~l~n~r 79 (88)
.+.+++|++|.|+ +.|+||++.+.+.++++.
T Consensus 27 ~~~~~~~~~~~r~------~~v~aG~~~~~~~~~~~~ 57 (273)
T 2b7n_A 27 KDFKATAFVRAKQ------EGVFSGEKYALELLEMTG 57 (273)
T ss_dssp CCCEEEEEEEESS------CEECCCHHHHHHHHHHTT
T ss_pred CCCeEEEEEEEcC------CEEEEcHHHHHHHHHHCC
Confidence 4678999999997 699999999999999875
No 12
>3c2e_A Nicotinate-nucleotide pyrophosphorylase; qprtase, prtase, BNA6, mechanism, cytoplasm, glycosyltransferase, nucleus; 1.90A {Saccharomyces cerevisiae} PDB: 3c2f_A* 3c2o_A* 3c2v_A* 3c2r_A*
Probab=91.04 E-value=0.18 Score=38.09 Aligned_cols=30 Identities=13% Similarity=0.226 Sum_probs=27.2
Q ss_pred CCcEEEEeecccCCCCCceEeeechHHHHHHHhcCC
Q psy13801 44 TDNAVFDLFFRQNPFQGEFTIFAGLEECIRFLENFR 79 (88)
Q Consensus 44 ~~~A~FdlFfRk~Pf~g~f~V~AGLe~vl~~l~n~r 79 (88)
+.+++|++|.|+ +.|+||++.+.+.++++.
T Consensus 37 ~~~~~~~~~~r~------~~v~aG~~~~~~~~~~~~ 66 (294)
T 3c2e_A 37 SDLKEANLYCKQ------DGMLCGVPFAQEVFNQCE 66 (294)
T ss_dssp SCEEEEEEEECS------SEECCCHHHHHHHHHHTT
T ss_pred CCeEEEEEEECC------CEEEEcHHHHHHHHHHcC
Confidence 668999999997 599999999999999875
No 13
>2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism, transferase, polymorphism, glycosyltransferase, pyridine nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens} PDB: 3lar_A
Probab=91.02 E-value=0.19 Score=38.08 Aligned_cols=30 Identities=10% Similarity=0.101 Sum_probs=27.0
Q ss_pred CCcEEEEeecccCCCCCceEeeechHHHHHHHhcCC
Q psy13801 44 TDNAVFDLFFRQNPFQGEFTIFAGLEECIRFLENFR 79 (88)
Q Consensus 44 ~~~A~FdlFfRk~Pf~g~f~V~AGLe~vl~~l~n~r 79 (88)
+.+++|++|.|+ +.|+||++.+.+.++++.
T Consensus 41 ~~~~~~~~~~r~------~~v~aG~~~~~~~~~~~~ 70 (299)
T 2jbm_A 41 AGPSQAALWAKS------PGVLAGQPFFDAIFTQLN 70 (299)
T ss_dssp SCEEEEEEEECS------CEECCCHHHHHHHHHHTT
T ss_pred CCeEEEEEEEcC------CEEEEcHHHHHHHHHHcC
Confidence 667999999997 599999999999999875
No 14
>1mxg_A Alpha amylase; hyperthermostable, family 13 glycosyl hydrola (beta/alpha)8-barrel, hydrolase; HET: ACR ETE; 1.60A {Pyrococcus woesei} SCOP: b.71.1.1 c.1.8.1 PDB: 1mwo_A* 1mxd_A* 3qgv_A*
Probab=40.01 E-value=8.9 Score=29.26 Aligned_cols=36 Identities=14% Similarity=0.191 Sum_probs=30.3
Q ss_pred CCcEEEEeecccCCCCCceEeeechHHHHHHHhcCCCC
Q psy13801 44 TDNAVFDLFFRQNPFQGEFTIFAGLEECIRFLENFRYS 81 (88)
Q Consensus 44 ~~~A~FdlFfRk~Pf~g~f~V~AGLe~vl~~l~n~rFs 81 (88)
....+.++|.|+.|.+|.+ +.|+.+-|+||+.+-|+
T Consensus 8 ~~~viyq~f~w~~~~~G~~--~~gi~~~Ldyl~~lGvt 43 (435)
T 1mxg_A 8 EGGVIMQAFYWDVPGGGIW--WDHIRSKIPEWYEAGIS 43 (435)
T ss_dssp GTCCEEECCCTTCCCSSCH--HHHHHHHHHHHHHHTCC
T ss_pred CCcEEEEEEEeccCCCCCH--HHHHHHHHHHHHHcCCC
Confidence 4568999999999988874 68999999999998776
No 15
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=34.81 E-value=17 Score=21.81 Aligned_cols=18 Identities=11% Similarity=0.359 Sum_probs=14.9
Q ss_pred echHHHHHHHhcCCCCCC
Q psy13801 66 AGLEECIRFLENFRYSDS 83 (88)
Q Consensus 66 AGLe~vl~~l~n~rFs~e 83 (88)
.||+.+++||+...+.+.
T Consensus 36 ~Gle~AmewL~k~~~~~~ 53 (54)
T 2cos_A 36 RSIEAALEYISKMSGPSS 53 (54)
T ss_dssp CCHHHHHHHHHHHSCSCC
T ss_pred ccHHHHHHHHHHhcCCCC
Confidence 579999999998887653
No 16
>2zvv_Y Cyclin-dependent kinase inhibitor 1; protein-peptide complex, DNA replication, DNA-binding, nucleus, DNA binding protein; 2.00A {Arabidopsis thaliana} PDB: 1axc_B 2zvw_I
Probab=25.21 E-value=22 Score=18.36 Aligned_cols=7 Identities=43% Similarity=0.724 Sum_probs=5.5
Q ss_pred HHHHHHH
Q psy13801 24 LCTDLYQ 30 (88)
Q Consensus 24 LlTDlYe 30 (88)
-+||+|+
T Consensus 8 s~TDFYh 14 (26)
T 2zvv_Y 8 SMTDFYH 14 (26)
T ss_pred chhHHHh
Confidence 3689997
Done!