RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13801
(88 letters)
>2f7f_A Nicotinate phosphoribosyltransferase, putative; structural
genomics, PSI; 2.00A {Enterococcus faecalis} SCOP:
c.1.17.1 d.41.2.1
Length = 494
Score = 114 bits (286), Expect = 1e-31
Identities = 27/60 (45%), Positives = 40/60 (66%)
Query: 24 LCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQGEFTIFAGLEECIRFLENFRYSDS 83
L TD+YQI M YW+ G+ +AVF+ +FR+ PF + IFAGLE + +LEN +++S
Sbjct: 12 LHTDMYQINMMQTYWELGRADLHAVFECYFREMPFNHGYAIFAGLERLVNYLENLTFTES 71
>2i14_A Nicotinate-nucleotide pyrophosphorylase; ligand binding,
phosphoribosylpyrophosphate, Zn metal ION, structural
genomics, PSI; HET: PCP; 2.90A {Pyrococcus furiosus}
SCOP: c.1.17.1 d.41.2.1
Length = 395
Score = 92.7 bits (231), Expect = 3e-24
Identities = 11/63 (17%), Positives = 22/63 (34%), Gaps = 2/63 (3%)
Query: 24 LCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQGEFTIFAGLEECIRFLENFRYS-D 82
TD+Y + + D+ P + + G+EE + LE +
Sbjct: 22 KTTDVYFLRTKKILEVKNI-RKKVLADVTTTSLPNNWRWGVLVGVEEVAKLLEGIPVNVY 80
Query: 83 SVP 85
++P
Sbjct: 81 AMP 83
>1vlp_A Naprtase, nicotinate phosphoribosyltransferase; structural
genomics, joint center for structural genomics; HET:
MSE MES; 1.75A {Saccharomyces cerevisiae} SCOP:
c.1.17.2 d.41.2.2
Length = 441
Score = 82.5 bits (204), Expect = 2e-20
Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Query: 24 LCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQGEFTIFAGLEECIRFLENFRYSDS 83
L TD+Y+ITM A + + + R + L+E +L N R+++
Sbjct: 22 LDTDMYKITMHAAVFTNFP-DVTVTYKYTNRSSQLTFNKEAINWLKEQFSYLGNLRFTEE 80
>3os4_A Naprtase, nicotinate phosphoribosyltransferase; structural
genomics, center for structural genomics of infec
diseases, csgid, TIM barrel; HET: MSE; 1.60A {Yersinia
pestis}
Length = 407
Score = 78.6 bits (194), Expect = 4e-19
Identities = 8/60 (13%), Positives = 19/60 (31%), Gaps = 3/60 (5%)
Query: 24 LCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQGEFTIFAGLEECIRFLENFRYSDS 83
L TD Y++ M A + + + R + G + + + + +
Sbjct: 13 LDTDAYKLHMQQAVFHHYR-HITVAAEFRCRSDELLGVY--ADEIRHQVTLMGQLALTSD 69
>1ybe_A Naprtase, nicotinate phosphoribosyltransferase; structural
genomics, protein structure initiative, NYSGXRC, PSI;
2.50A {Agrobacterium tumefaciens} SCOP: c.1.17.2
d.41.2.2
Length = 449
Score = 73.0 bits (179), Expect = 4e-17
Identities = 15/61 (24%), Positives = 21/61 (34%), Gaps = 2/61 (3%)
Query: 24 LCTDLYQITMAYAYWKSGKVTDNAVFDLFFR-QNPFQGEFTIFAGLEECIRFLENFRYSD 82
+ TD Y++ M WK +A F L R + E L E + R S
Sbjct: 32 IDTDFYKLLMLQMIWKLYP-EVDATFSLINRTKTVRLAEEIDEMELREQLDHARTLRLSK 90
Query: 83 S 83
Sbjct: 91 K 91
>1yir_A Naprtase 2, nicotinate phosphoribosyltransferase 2; structural
genomics, protein structure initiative, hypothetical
protein, NYSGXRC, PSI; 2.10A {Pseudomonas aeruginosa}
SCOP: c.1.17.2 d.41.2.2
Length = 408
Score = 70.8 bits (174), Expect = 2e-16
Identities = 12/60 (20%), Positives = 21/60 (35%), Gaps = 3/60 (5%)
Query: 24 LCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQGEFTIFAGLEECIRFLENFRYSDS 83
L TD Y++TM A + ++ R + + E + +L SD
Sbjct: 17 LDTDFYKLTMMQAVLHNYP-NAEVEWEFRCRNQEDLRLY--LPAIREQLEYLAGLAISDE 73
>2im5_A Nicotinate phosphoribosyltransferase; structural genomics,
NYSGXRC, PSI, protein structure initiative; 2.20A
{Porphyromonas gingivalis}
Length = 394
Score = 67.5 bits (165), Expect = 4e-15
Identities = 15/60 (25%), Positives = 19/60 (31%), Gaps = 2/60 (3%)
Query: 24 LCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQGEFTIFAGLEECIRFLENFRYSDS 83
L TDLY+ T YAY K F R N + IR + +
Sbjct: 8 LDTDLYKFTTGYAYAKLFPRAY-GEFRFIDR-NRQGFTEEFAELVRGEIRAMAALSLTRD 65
>2i1o_A Nicotinate phosphoribosyltransferase; ZIN ION, zinc finger M
structural genomics, PSI, protein structure initiative;
2.40A {Thermoplasma acidophilum} PDB: 1ytd_A* 1yte_A*
1ytk_A
Length = 398
Score = 59.3 bits (144), Expect = 4e-12
Identities = 11/63 (17%), Positives = 20/63 (31%), Gaps = 4/63 (6%)
Query: 24 LCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQGEFTIFAGLEECIRFLENFRYS-D 82
L +D+Y A + + F GL+E ++ LE
Sbjct: 22 LASDVYFERTISAIGDKCN-DLRVAMEATVSGPL--DTWINFTGLDEVLKLLEGLDVDLY 78
Query: 83 SVP 85
++P
Sbjct: 79 AIP 81
>3dhf_A Nicotinamide phosphoribosyltransferase; NMPRTASE, NAMPRTASE,
visfatin, beryllium fluoride, nicotinamide
D-ribonucleotide, pyrophosphate; HET: NMN; 1.80A {Homo
sapiens} PDB: 3dgr_A* 3dhd_A* 3dkj_A* 3dkl_A* 2gvj_A*
2gvg_A* 2e5b_A 2e5c_A* 2e5d_A 2h3d_A* 2gvl_A 2h3b_A
2g95_A 2g96_A* 2g97_A* 3g8e_A*
Length = 484
Score = 54.3 bits (130), Expect = 2e-10
Identities = 14/69 (20%), Positives = 26/69 (37%), Gaps = 12/69 (17%)
Query: 24 LCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPF--------QGEFTIFAGLEECI-RF 74
L TD Y++T Y + T R+ + E T+F GL+ + ++
Sbjct: 13 LATDSYKVTHYKQYPPN---TSKVYSYFECREKKTENSKLRKVKYEETVFYGLQYILNKY 69
Query: 75 LENFRYSDS 83
L+ +
Sbjct: 70 LKGKVVTKE 78
>1h0b_A Cellulase; endoglucanase, hydrolase; HET: EPE; 1.8A {Rhodothermus
marinus} SCOP: b.29.1.11
Length = 256
Score = 25.4 bits (55), Expect = 2.6
Identities = 5/31 (16%), Positives = 12/31 (38%)
Query: 27 DLYQITMAYAYWKSGKVTDNAVFDLFFRQNP 57
+L + ++ NA +D++F
Sbjct: 83 ELSDVRTSWTLTPITTGRWNAAYDIWFSPVT 113
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane
protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Length = 225
Score = 24.9 bits (55), Expect = 3.5
Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 3/30 (10%)
Query: 30 QITMAYAYWKSGKVTDNAVFDL--FFRQNP 57
Q+ + YAY+K+ A + F R NP
Sbjct: 44 QLDLIYAYYKNAD-LPLAQAAIDRFIRLNP 72
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal
alpha-beta the C-terminal all beta domain., structural
genomics; 2.00A {Nostoc SP}
Length = 374
Score = 24.5 bits (53), Expect = 5.2
Identities = 6/48 (12%), Positives = 14/48 (29%)
Query: 36 AYWKSGKVTDNAVFDLFFRQNPFQGEFTIFAGLEECIRFLENFRYSDS 83
W+ K + + + E + G++ + Y S
Sbjct: 75 RNWEEVKKLEAQYLRTPIIKEVYGQELVVLPGMDSALALNAIREYDAS 122
>2bw8_A Endoglucanase; hydrolase, cellulase, glycoside hydrolase family 12;
1.54A {Rhodothermus marinus} SCOP: b.29.1.11 PDB:
2bwa_A* 2bwc_A* 3b7m_A
Length = 227
Score = 24.2 bits (52), Expect = 6.1
Identities = 5/31 (16%), Positives = 12/31 (38%)
Query: 27 DLYQITMAYAYWKSGKVTDNAVFDLFFRQNP 57
+L + ++ NA +D++F
Sbjct: 83 ELSDVRTSWTLTPITTGRWNAAYDIWFSPVT 113
>1gwy_A Sticholysin II; cytolysin, pore-forming toxin, hemolysis,
cnidocyst; 1.71A {Stoichactis helianthus} SCOP: b.97.1.1
PDB: 1o71_A 1o72_A* 2ks3_A 2l38_A 2l2b_A 2ks4_A
Length = 175
Score = 23.6 bits (50), Expect = 9.9
Identities = 11/57 (19%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Query: 7 LLSMEASAVNMLCIMFWLCTD--LYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQGE 61
+ S+ N L +MF + D Y + + D +++ + NP++G+
Sbjct: 87 AFAYYMSSGNTLGVMFSVPFDYNWYSNWWDVKIYSGKRRADQGMYEDLYYGNPYRGD 143
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.329 0.139 0.441
Gapped
Lambda K H
0.267 0.0699 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,293,611
Number of extensions: 60803
Number of successful extensions: 135
Number of sequences better than 10.0: 1
Number of HSP's gapped: 123
Number of HSP's successfully gapped: 14
Length of query: 88
Length of database: 6,701,793
Length adjustment: 56
Effective length of query: 32
Effective length of database: 5,138,217
Effective search space: 164422944
Effective search space used: 164422944
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 51 (23.5 bits)