RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13801
         (88 letters)



>d2f7fa2 d.41.2.1 (A:4-140) Putative nicotinate
          phosphoribosyltransferase EF2626 {Enterococcus faecalis
          [TaxId: 1351]}
          Length = 137

 Score = 81.0 bits (200), Expect = 5e-22
 Identities = 27/60 (45%), Positives = 40/60 (66%)

Query: 24 LCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQGEFTIFAGLEECIRFLENFRYSDS 83
          L TD+YQI M   YW+ G+   +AVF+ +FR+ PF   + IFAGLE  + +LEN  +++S
Sbjct: 9  LHTDMYQINMMQTYWELGRADLHAVFECYFREMPFNHGYAIFAGLERLVNYLENLTFTES 68


>d1vlpa1 d.41.2.2 (A:1-149) Nicotinate phosphoribosyltransferase,
          N-terminal domain {Baker's yeast (Saccharomyces
          cerevisiae) [TaxId: 4932]}
          Length = 149

 Score = 74.8 bits (184), Expect = 2e-19
 Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 1/60 (1%)

Query: 24 LCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQGEFTIFAGLEECIRFLENFRYSDS 83
          L TD+Y+ITM  A + +        +    R +           L+E   +L N R+++ 
Sbjct: 10 LDTDMYKITMHAAVFTNFP-DVTVTYKYTNRSSQLTFNKEAINWLKEQFSYLGNLRFTEE 68


>d1ybea2 d.41.2.2 (A:8-167) Nicotinate phosphoribosyltransferase,
          N-terminal domain {Agrobacterium tumefaciens [TaxId:
          358]}
          Length = 160

 Score = 68.7 bits (168), Expect = 5e-17
 Identities = 16/61 (26%), Positives = 20/61 (32%), Gaps = 2/61 (3%)

Query: 24 LCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNP-FQGEFTIFAGLEECIRFLENFRYSD 82
          + TD Y++ M    WK     D A F L  R       E      L E +      R S 
Sbjct: 25 IDTDFYKLLMLQMIWKLYPEVD-ATFSLINRTKTVRLAEEIDEMELREQLDHARTLRLSK 83

Query: 83 S 83
           
Sbjct: 84 K 84


>d1yira2 d.41.2.2 (A:4-144) Nicotinate phosphoribosyltransferase,
          N-terminal domain {Pseudomonas aeruginosa [TaxId: 287]}
          Length = 141

 Score = 65.5 bits (160), Expect = 6e-16
 Identities = 12/60 (20%), Positives = 21/60 (35%), Gaps = 3/60 (5%)

Query: 24 LCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQGEFTIFAGLEECIRFLENFRYSDS 83
          L TD Y++TM  A   +        ++   R       +     + E + +L     SD 
Sbjct: 14 LDTDFYKLTMMQAVLHNYP-NAEVEWEFRCRNQEDLRLY--LPAIREQLEYLAGLAISDE 70


>d2i14a2 d.41.2.1 (A:1-110) Nicotinate-nucleotide
          pyrophosphorylase PF1904 {Pyrococcus furiosus [TaxId:
          2261]}
          Length = 110

 Score = 59.8 bits (145), Expect = 5e-14
 Identities = 10/58 (17%), Positives = 20/58 (34%), Gaps = 1/58 (1%)

Query: 24 LCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQGEFTIFAGLEECIRFLENFRYS 81
            TD+Y +           +    + D+     P    + +  G+EE  + LE    +
Sbjct: 16 KTTDVYFLRTKKILEV-KNIRKKVLADVTTTSLPNNWRWGVLVGVEEVAKLLEGIPVN 72


>d1ytda2 d.41.2.1 (A:1-119) Nicotinate phosphoribosyltransferase
          Ta1145 {Thermoplasma acidophilum [TaxId: 2303]}
          Length = 119

 Score = 56.7 bits (137), Expect = 9e-13
 Identities = 13/57 (22%), Positives = 19/57 (33%), Gaps = 3/57 (5%)

Query: 24 LCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQGEFTIFAGLEECIRFLENFRY 80
          L +D+Y      A        D  V        P    +  F GL+E ++ LE    
Sbjct: 16 LASDVYFERTISAIGDKCN--DLRVAMEATVSGP-LDTWINFTGLDEVLKLLEGLDV 69


>d1gwya_ b.97.1.1 (A:) Sticholysin II {Carribean sea anemone
           (Stoichactis helianthus) [TaxId: 6123]}
          Length = 175

 Score = 27.5 bits (61), Expect = 0.15
 Identities = 11/56 (19%), Positives = 23/56 (41%), Gaps = 2/56 (3%)

Query: 7   LLSMEASAVNMLCIMFWLCTD--LYQITMAYAYWKSGKVTDNAVFDLFFRQNPFQG 60
             +   S+ N L +MF +  D   Y        +   +  D  +++  +  NP++G
Sbjct: 87  AFAYYMSSGNTLGVMFSVPFDYNWYSNWWDVKIYSGKRRADQGMYEDLYYGNPYRG 142


>d1i1ra1 b.1.2.1 (A:2-101) Cytokine receptor gp130
          cytokine-binding domains {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 100

 Score = 27.1 bits (60), Expect = 0.15
 Identities = 7/27 (25%), Positives = 12/27 (44%)

Query: 13 SAVNMLCIMFWLCTDLYQITMAYAYWK 39
          S    +C++   C D + +   Y  WK
Sbjct: 19 SNFTAVCVLKEKCMDYFHVNANYIVWK 45


>d1f3va_ d.58.22.1 (A:) TRADD, N-terminal domain {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 158

 Score = 23.3 bits (50), Expect = 4.4
 Identities = 7/15 (46%), Positives = 9/15 (60%)

Query: 65 FAGLEECIRFLENFR 79
          F G + C RFL  +R
Sbjct: 70 FCGRQPCGRFLRAYR 84


>d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 393

 Score = 22.9 bits (48), Expect = 8.8
 Identities = 12/74 (16%), Positives = 21/74 (28%), Gaps = 1/74 (1%)

Query: 8   LSMEASAVNMLCIMFWLCTDLYQITMAYAYWKSGKVTDNAVFDLFFRQNP-FQGEFTIFA 66
           L +  +A++   I  +L  D   +              + V              F I  
Sbjct: 255 LRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIKG 314

Query: 67  GLEECIRFLENFRY 80
           G E   +F  + R 
Sbjct: 315 GAEAASKFASSTRL 328


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.329    0.139    0.441 

Gapped
Lambda     K      H
   0.267   0.0647    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 322,468
Number of extensions: 12568
Number of successful extensions: 48
Number of sequences better than 10.0: 1
Number of HSP's gapped: 41
Number of HSP's successfully gapped: 11
Length of query: 88
Length of database: 2,407,596
Length adjustment: 53
Effective length of query: 35
Effective length of database: 1,679,906
Effective search space: 58796710
Effective search space used: 58796710
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 47 (22.1 bits)