BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13804
(129 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q75NA5|GBRB_MUSDO Gamma-aminobutyric acid receptor subunit beta OS=Musca domestica
GN=Rdl PE=1 SV=2
Length = 576
Score = 124 bits (311), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 61/78 (78%), Positives = 64/78 (82%), Gaps = 9/78 (11%)
Query: 55 DEEANAPPGPGGGAHLIHPGK---DINKLYGITPSDIDKYSRIVFPVCFVCFNLMYWIIY 111
D EA P AHL+HPGK DINKL GITPSDIDKYSRIVFPVCFVCFNLMYWIIY
Sbjct: 505 DAEAAVP------AHLLHPGKVKKDINKLLGITPSDIDKYSRIVFPVCFVCFNLMYWIIY 558
Query: 112 LHISDVVADDLVLLEEDK 129
LH+SDVVADDLVLL E+K
Sbjct: 559 LHVSDVVADDLVLLGEEK 576
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/29 (68%), Positives = 23/29 (79%)
Query: 1 MAKRIQMRKNRFMALQKVAEQKKTIEATG 29
MAKRIQMRK RFM +QK+AEQKK + G
Sbjct: 352 MAKRIQMRKQRFMTIQKMAEQKKQQQLDG 380
>sp|Q9BLY8|GBRB_DROSI Gamma-aminobutyric acid receptor subunit beta OS=Drosophila
simulans GN=Rdl PE=2 SV=1
Length = 606
Score = 123 bits (308), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 69/123 (56%), Positives = 73/123 (59%), Gaps = 42/123 (34%)
Query: 42 GGTLENTING---------------------------------RSTDEEANAPPGPGGGA 68
GGTLENT+NG D EA P A
Sbjct: 490 GGTLENTVNGGRGGPQSHGPGPGQGGGPPGGGGGGGGGGGPPEGGGDPEAAVP------A 543
Query: 69 HLIHPGK---DINKLYGITPSDIDKYSRIVFPVCFVCFNLMYWIIYLHISDVVADDLVLL 125
HL+HPGK DINKL GITPSDIDKYSRIVFPVCFVCFNLMYWIIYLH+SDVVADDLVLL
Sbjct: 544 HLLHPGKVKKDINKLLGITPSDIDKYSRIVFPVCFVCFNLMYWIIYLHVSDVVADDLVLL 603
Query: 126 EED 128
E+
Sbjct: 604 GEE 606
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 20/23 (86%), Positives = 22/23 (95%)
Query: 1 MAKRIQMRKNRFMALQKVAEQKK 23
MAKRIQMRK RFMA+QK+AEQKK
Sbjct: 354 MAKRIQMRKQRFMAIQKIAEQKK 376
>sp|P25123|GBRB_DROME Gamma-aminobutyric acid receptor subunit beta OS=Drosophila
melanogaster GN=Rdl PE=2 SV=3
Length = 606
Score = 123 bits (308), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 69/123 (56%), Positives = 73/123 (59%), Gaps = 42/123 (34%)
Query: 42 GGTLENTING---------------------------------RSTDEEANAPPGPGGGA 68
GGTLENT+NG D EA P A
Sbjct: 490 GGTLENTVNGGRGGPQSHGPGPGQGGGPPGGGGGGGGGGGPPEGGGDPEAAVP------A 543
Query: 69 HLIHPGK---DINKLYGITPSDIDKYSRIVFPVCFVCFNLMYWIIYLHISDVVADDLVLL 125
HL+HPGK DINKL GITPSDIDKYSRIVFPVCFVCFNLMYWIIYLH+SDVVADDLVLL
Sbjct: 544 HLLHPGKVKKDINKLLGITPSDIDKYSRIVFPVCFVCFNLMYWIIYLHVSDVVADDLVLL 603
Query: 126 EED 128
E+
Sbjct: 604 GEE 606
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 20/23 (86%), Positives = 22/23 (95%)
Query: 1 MAKRIQMRKNRFMALQKVAEQKK 23
MAKRIQMRK RFMA+QK+AEQKK
Sbjct: 354 MAKRIQMRKQRFMAIQKIAEQKK 376
>sp|O18276|GBRB_CAEEL Gamma-aminobutyric acid receptor subunit beta OS=Caenorhabditis
elegans GN=gab-1 PE=2 SV=3
Length = 550
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 18/27 (66%), Positives = 22/27 (81%)
Query: 88 IDKYSRIVFPVCFVCFNLMYWIIYLHI 114
IDKYSR+VFPVCF+ FNL YW Y+ +
Sbjct: 522 IDKYSRVVFPVCFIVFNLFYWSYYMMV 548
>sp|P30191|GBRA6_RAT Gamma-aminobutyric acid receptor subunit alpha-6 OS=Rattus
norvegicus GN=Gabra6 PE=2 SV=1
Length = 453
Score = 48.9 bits (115), Expect = 9e-06, Method: Composition-based stats.
Identities = 19/27 (70%), Positives = 23/27 (85%)
Query: 86 SDIDKYSRIVFPVCFVCFNLMYWIIYL 112
S ID+YSRI+FPV F FNL+YWI+YL
Sbjct: 415 SKIDQYSRILFPVAFAGFNLVYWIVYL 441
>sp|P16305|GBRA6_MOUSE Gamma-aminobutyric acid receptor subunit alpha-6 OS=Mus musculus
GN=Gabra6 PE=1 SV=3
Length = 453
Score = 48.9 bits (115), Expect = 9e-06, Method: Composition-based stats.
Identities = 19/27 (70%), Positives = 23/27 (85%)
Query: 86 SDIDKYSRIVFPVCFVCFNLMYWIIYL 112
S ID+YSRI+FPV F FNL+YWI+YL
Sbjct: 415 SKIDQYSRILFPVAFAGFNLVYWIVYL 441
>sp|P23415|GLRA1_HUMAN Glycine receptor subunit alpha-1 OS=Homo sapiens GN=GLRA1 PE=1 SV=2
Length = 457
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 6/64 (9%)
Query: 48 TINGRSTDEEANAPPGPGGGAHLIHPGKDINKLYGITPSDIDKYSRIVFPVCFVCFNLMY 107
++ G + N PP P +++ KL+ IDK SRI FP+ F+ FN+ Y
Sbjct: 389 SVKGANNSNTTNPPPAPSKSP------EEMRKLFIQRAKKIDKISRIGFPMAFLIFNMFY 442
Query: 108 WIIY 111
WIIY
Sbjct: 443 WIIY 446
>sp|P57695|GLRA1_BOVIN Glycine receptor subunit alpha-1 OS=Bos taurus GN=GLRA1 PE=2 SV=1
Length = 457
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 6/64 (9%)
Query: 48 TINGRSTDEEANAPPGPGGGAHLIHPGKDINKLYGITPSDIDKYSRIVFPVCFVCFNLMY 107
++ G + N PP P +++ KL+ IDK SRI FP+ F+ FN+ Y
Sbjct: 389 SVKGANNSNTTNPPPAPSKSP------EEMRKLFIQRAKKIDKISRIGFPMAFLIFNMFY 442
Query: 108 WIIY 111
WIIY
Sbjct: 443 WIIY 446
>sp|Q16445|GBRA6_HUMAN Gamma-aminobutyric acid receptor subunit alpha-6 OS=Homo sapiens
GN=GABRA6 PE=2 SV=2
Length = 453
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 18/27 (66%), Positives = 23/27 (85%)
Query: 86 SDIDKYSRIVFPVCFVCFNLMYWIIYL 112
S ID+YSRI+FPV F FNL+YW++YL
Sbjct: 415 SKIDQYSRILFPVAFAGFNLVYWVVYL 441
>sp|Q90845|GBRA6_CHICK Gamma-aminobutyric acid receptor subunit alpha-6 OS=Gallus gallus
GN=GABRA6 PE=2 SV=1
Length = 465
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 18/27 (66%), Positives = 23/27 (85%)
Query: 86 SDIDKYSRIVFPVCFVCFNLMYWIIYL 112
S ID+YSRI+FPV F FNL+YW++YL
Sbjct: 417 SKIDQYSRILFPVAFAGFNLVYWVVYL 443
>sp|P20237|GBRA4_BOVIN Gamma-aminobutyric acid receptor subunit alpha-4 OS=Bos taurus
GN=GABRA4 PE=2 SV=2
Length = 555
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 17/60 (28%)
Query: 53 STDEEANAPPGPGGGAHLIHPGKDINKLYGITPSDIDKYSRIVFPVCFVCFNLMYWIIYL 112
S +APP G G S IDKY+RI+FPV F FN++YW++YL
Sbjct: 501 SATTTPSAPPPSGSGT-----------------SKIDKYARILFPVTFGAFNMVYWVVYL 543
>sp|Q9D6F4|GBRA4_MOUSE Gamma-aminobutyric acid receptor subunit alpha-4 OS=Mus musculus
GN=Gabra4 PE=2 SV=1
Length = 552
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 18/31 (58%), Positives = 24/31 (77%)
Query: 82 GITPSDIDKYSRIVFPVCFVCFNLMYWIIYL 112
G S IDKY+RI+FPV F FN++YW++YL
Sbjct: 510 GSGTSKIDKYARILFPVTFGAFNMVYWVVYL 540
>sp|P28471|GBRA4_RAT Gamma-aminobutyric acid receptor subunit alpha-4 OS=Rattus
norvegicus GN=Gabra4 PE=2 SV=1
Length = 552
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 17/27 (62%), Positives = 23/27 (85%)
Query: 86 SDIDKYSRIVFPVCFVCFNLMYWIIYL 112
S IDKY+RI+FPV F FN++YW++YL
Sbjct: 514 SKIDKYARILFPVTFGAFNMVYWVVYL 540
>sp|P48169|GBRA4_HUMAN Gamma-aminobutyric acid receptor subunit alpha-4 OS=Homo sapiens
GN=GABRA4 PE=2 SV=2
Length = 554
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 17/27 (62%), Positives = 23/27 (85%)
Query: 86 SDIDKYSRIVFPVCFVCFNLMYWIIYL 112
S IDKY+RI+FPV F FN++YW++YL
Sbjct: 516 SKIDKYARILFPVTFGAFNMVYWVVYL 542
>sp|Q08E50|GBRA5_BOVIN Gamma-aminobutyric acid receptor subunit alpha-5 OS=Bos taurus
GN=GABRA5 PE=2 SV=1
Length = 462
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 45/102 (44%), Gaps = 9/102 (8%)
Query: 17 KVAEQKKTIEATGHPGQLGLGHGPPGGTLENTINGRSTDEEANAPPGPGGGAHLIHPGKD 76
K E++ TI + + G PP E T G + A+ P + K
Sbjct: 363 KKKERELTINKSTNAYTTGKMTHPPNIPKEQTPAGTTNASSASVKPEDKASEN----KKT 418
Query: 77 INKLYGITPSDIDKYSRIVFPVCFVCFNLMYWIIYLHISDVV 118
N + S IDK SRI+FP+ F FNL+YW YL+ V+
Sbjct: 419 YNSI-----SKIDKMSRIIFPLLFGTFNLVYWATYLNREPVI 455
>sp|Q61603|GLRA4_MOUSE Glycine receptor subunit alpha-4 OS=Mus musculus GN=Glra4 PE=2 SV=3
Length = 456
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 39/80 (48%), Gaps = 14/80 (17%)
Query: 35 GLGH---GPPGGTLENTINGRSTDEEANAPPGPGGGAHLIHPGKDINKLYGITPSDIDKY 91
GLGH GG +E G S + PP P L+ G+ + KLY ID
Sbjct: 376 GLGHCLQARDGGPME----GSSI--YSPQPPTP-----LLKEGETMRKLYVDRAKRIDTI 424
Query: 92 SRIVFPVCFVCFNLMYWIIY 111
SR VFP F+ FN+ YW++Y
Sbjct: 425 SRAVFPFTFLVFNIFYWVVY 444
>sp|P31644|GBRA5_HUMAN Gamma-aminobutyric acid receptor subunit alpha-5 OS=Homo sapiens
GN=GABRA5 PE=1 SV=1
Length = 462
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 51/113 (45%), Gaps = 18/113 (15%)
Query: 6 QMRKNRFMALQKVAEQKKTIEATGHPGQLGLGHGPPGGTLENTINGRSTDEEANAPPGPG 65
+++K R + L K + T HP + P G + +++ + ++E+ +
Sbjct: 361 KIKKKREVILNK-STNAFTTGKMSHPPNIPKEQTPAGTSNTTSVSVKPSEEKTS------ 413
Query: 66 GGAHLIHPGKDINKLYGITPSDIDKYSRIVFPVCFVCFNLMYWIIYLHISDVV 118
K N + S IDK SRIVFPV F FNL+YW YL+ V+
Sbjct: 414 ------ESKKTYNSI-----SKIDKMSRIVFPVLFGTFNLVYWATYLNREPVI 455
>sp|P28473|GBRG3_RAT Gamma-aminobutyric acid receptor subunit gamma-3 OS=Rattus
norvegicus GN=Gabrg3 PE=2 SV=1
Length = 467
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 16/32 (50%), Positives = 24/32 (75%)
Query: 83 ITPSDIDKYSRIVFPVCFVCFNLMYWIIYLHI 114
I S++D YSR+ FP F+ FNL+YW+ YL++
Sbjct: 436 IDVSELDSYSRVFFPTSFLLFNLVYWVGYLYL 467
>sp|P27681|GBRG3_MOUSE Gamma-aminobutyric acid receptor subunit gamma-3 OS=Mus musculus
GN=Gabrg3 PE=2 SV=2
Length = 467
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 16/32 (50%), Positives = 24/32 (75%)
Query: 83 ITPSDIDKYSRIVFPVCFVCFNLMYWIIYLHI 114
I S++D YSR+ FP F+ FNL+YW+ YL++
Sbjct: 436 IDVSELDSYSRVFFPTSFLLFNLVYWVGYLYL 467
>sp|P50573|GBRR3_RAT Gamma-aminobutyric acid receptor subunit rho-3 OS=Rattus norvegicus
GN=Gabrr3 PE=1 SV=1
Length = 464
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/25 (68%), Positives = 20/25 (80%)
Query: 88 IDKYSRIVFPVCFVCFNLMYWIIYL 112
ID YSRIVFPV ++ FNL YW IY+
Sbjct: 440 IDTYSRIVFPVVYIIFNLFYWGIYV 464
>sp|Q8BHJ7|GBRA5_MOUSE Gamma-aminobutyric acid receptor subunit alpha-5 OS=Mus musculus
GN=Gabra5 PE=2 SV=1
Length = 463
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 23/33 (69%)
Query: 86 SDIDKYSRIVFPVCFVCFNLMYWIIYLHISDVV 118
S IDK SRIVFP+ F FNL+YW YL+ V+
Sbjct: 424 SKIDKMSRIVFPILFGTFNLVYWATYLNREPVI 456
>sp|P19969|GBRA5_RAT Gamma-aminobutyric acid receptor subunit alpha-5 OS=Rattus
norvegicus GN=Gabra5 PE=2 SV=1
Length = 464
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 23/33 (69%)
Query: 86 SDIDKYSRIVFPVCFVCFNLMYWIIYLHISDVV 118
S IDK SRIVFP+ F FNL+YW YL+ V+
Sbjct: 425 SKIDKMSRIVFPILFGTFNLVYWATYLNREPVI 457
>sp|P34904|GBRG4_CHICK Gamma-aminobutyric acid receptor subunit gamma-4 OS=Gallus gallus
GN=GABRG4 PE=2 SV=1
Length = 457
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 15/29 (51%), Positives = 22/29 (75%)
Query: 86 SDIDKYSRIVFPVCFVCFNLMYWIIYLHI 114
S +D YSR+ FP F+ FN++YWI YL++
Sbjct: 429 SRLDSYSRVFFPTAFLLFNIVYWIAYLYL 457
>sp|P23574|GBRG1_RAT Gamma-aminobutyric acid receptor subunit gamma-1 OS=Rattus
norvegicus GN=Gabrg1 PE=2 SV=1
Length = 465
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 17/32 (53%), Positives = 22/32 (68%)
Query: 83 ITPSDIDKYSRIVFPVCFVCFNLMYWIIYLHI 114
I + ID YSRI FP F FNL+YW+ YL++
Sbjct: 434 IRIAKIDSYSRIFFPTAFALFNLVYWVGYLYL 465
>sp|Q9R0Y8|GBRG1_MOUSE Gamma-aminobutyric acid receptor subunit gamma-1 OS=Mus musculus
GN=Gabrg1 PE=2 SV=2
Length = 465
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 17/32 (53%), Positives = 22/32 (68%)
Query: 83 ITPSDIDKYSRIVFPVCFVCFNLMYWIIYLHI 114
I + ID YSRI FP F FNL+YW+ YL++
Sbjct: 434 IRIAKIDSYSRIFFPTAFALFNLVYWVGYLYL 465
>sp|P50572|GBRR1_RAT Gamma-aminobutyric acid receptor subunit rho-1 OS=Rattus norvegicus
GN=Gabrr1 PE=1 SV=2
Length = 480
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 16/29 (55%), Positives = 21/29 (72%)
Query: 83 ITPSDIDKYSRIVFPVCFVCFNLMYWIIY 111
I IDKYSRI+FP ++ FNL+YW I+
Sbjct: 451 INTHAIDKYSRIIFPAAYILFNLIYWSIF 479
>sp|P56475|GBRR1_MOUSE Gamma-aminobutyric acid receptor subunit rho-1 OS=Mus musculus
GN=Gabrr1 PE=2 SV=2
Length = 480
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 16/29 (55%), Positives = 21/29 (72%)
Query: 83 ITPSDIDKYSRIVFPVCFVCFNLMYWIIY 111
I IDKYSRI+FP ++ FNL+YW I+
Sbjct: 451 INTHAIDKYSRIIFPAAYILFNLIYWSIF 479
>sp|P24045|GBRB4_CHICK Gamma-aminobutyric acid receptor subunit beta-4 OS=Gallus gallus
GN=GABRB4 PE=2 SV=1
Length = 488
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 16/28 (57%), Positives = 23/28 (82%)
Query: 86 SDIDKYSRIVFPVCFVCFNLMYWIIYLH 113
S IDK+SRI+FP+ F FNL+YW+ Y++
Sbjct: 461 STIDKWSRIIFPITFGFFNLVYWLYYVN 488
>sp|P24046|GBRR1_HUMAN Gamma-aminobutyric acid receptor subunit rho-1 OS=Homo sapiens
GN=GABRR1 PE=2 SV=2
Length = 479
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 15/24 (62%), Positives = 20/24 (83%)
Query: 88 IDKYSRIVFPVCFVCFNLMYWIIY 111
IDKYSRI+FP ++ FNL+YW I+
Sbjct: 455 IDKYSRIIFPAAYILFNLIYWSIF 478
>sp|P23576|GBRA2_RAT Gamma-aminobutyric acid receptor subunit alpha-2 OS=Rattus
norvegicus GN=Gabra2 PE=2 SV=1
Length = 451
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 19/34 (55%), Positives = 23/34 (67%)
Query: 86 SDIDKYSRIVFPVCFVCFNLMYWIIYLHISDVVA 119
S ID+ SRIVFPV F FNL+YW YL+ V+
Sbjct: 415 SKIDRMSRIVFPVLFGTFNLVYWATYLNREPVLG 448
>sp|Q5RCC5|GBRA2_PONAB Gamma-aminobutyric acid receptor subunit alpha-2 OS=Pongo abelii
GN=GABRA2 PE=2 SV=2
Length = 451
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 19/34 (55%), Positives = 23/34 (67%)
Query: 86 SDIDKYSRIVFPVCFVCFNLMYWIIYLHISDVVA 119
S ID+ SRIVFPV F FNL+YW YL+ V+
Sbjct: 415 SKIDRMSRIVFPVLFGTFNLVYWATYLNREPVLG 448
>sp|P26048|GBRA2_MOUSE Gamma-aminobutyric acid receptor subunit alpha-2 OS=Mus musculus
GN=Gabra2 PE=1 SV=1
Length = 451
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 19/34 (55%), Positives = 23/34 (67%)
Query: 86 SDIDKYSRIVFPVCFVCFNLMYWIIYLHISDVVA 119
S ID+ SRIVFPV F FNL+YW YL+ V+
Sbjct: 415 SKIDRMSRIVFPVLFGTFNLVYWATYLNREPVLG 448
>sp|P47869|GBRA2_HUMAN Gamma-aminobutyric acid receptor subunit alpha-2 OS=Homo sapiens
GN=GABRA2 PE=2 SV=2
Length = 451
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 19/34 (55%), Positives = 23/34 (67%)
Query: 86 SDIDKYSRIVFPVCFVCFNLMYWIIYLHISDVVA 119
S ID+ SRIVFPV F FNL+YW YL+ V+
Sbjct: 415 SKIDRMSRIVFPVLFGTFNLVYWATYLNREPVLG 448
>sp|P10063|GBRA2_BOVIN Gamma-aminobutyric acid receptor subunit alpha-2 OS=Bos taurus
GN=GABRA2 PE=2 SV=1
Length = 451
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 19/34 (55%), Positives = 23/34 (67%)
Query: 86 SDIDKYSRIVFPVCFVCFNLMYWIIYLHISDVVA 119
S ID+ SRIVFPV F FNL+YW YL+ V+
Sbjct: 415 SKIDRMSRIVFPVLFGTFNLVYWATYLNREPVLG 448
>sp|Q08832|GBRB3_DROME Gamma-aminobutyric acid receptor subunit beta-like OS=Drosophila
melanogaster GN=Lcch3 PE=1 SV=2
Length = 496
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 15/25 (60%), Positives = 21/25 (84%)
Query: 88 IDKYSRIVFPVCFVCFNLMYWIIYL 112
IDKYSR++FP+ F+ FNL YW+ Y+
Sbjct: 470 IDKYSRMIFPISFLAFNLGYWLFYI 494
>sp|Q09453|GLRB4_CAEEL Glycine receptor subunit beta-type 4 OS=Caenorhabditis elegans
GN=ggr-1 PE=3 SV=2
Length = 473
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 26/37 (70%)
Query: 88 IDKYSRIVFPVCFVCFNLMYWIIYLHISDVVADDLVL 124
ID+YSR +FP+ F+ FN+ YWI YL + + +L+L
Sbjct: 437 IDRYSRALFPLAFIIFNIFYWIYYLKYAGSNSPELLL 473
>sp|Q64018|GLRA1_MOUSE Glycine receptor subunit alpha-1 OS=Mus musculus GN=Glra1 PE=1 SV=2
Length = 457
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 25/37 (67%)
Query: 75 KDINKLYGITPSDIDKYSRIVFPVCFVCFNLMYWIIY 111
+++ KL+ IDK SRI FP+ F+ FN+ YWIIY
Sbjct: 410 EEMRKLFIQRAKKIDKISRIGFPMAFLIFNMFYWIIY 446
>sp|Q99928|GBRG3_HUMAN Gamma-aminobutyric acid receptor subunit gamma-3 OS=Homo sapiens
GN=GABRG3 PE=2 SV=2
Length = 467
Score = 42.4 bits (98), Expect = 8e-04, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 22/28 (78%)
Query: 87 DIDKYSRIVFPVCFVCFNLMYWIIYLHI 114
++D YSR+ FP F+ FNL+YW+ YL++
Sbjct: 440 ELDSYSRVFFPTSFLLFNLVYWVGYLYL 467
>sp|P34903|GBRA3_HUMAN Gamma-aminobutyric acid receptor subunit alpha-3 OS=Homo sapiens
GN=GABRA3 PE=2 SV=1
Length = 492
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 21/28 (75%)
Query: 86 SDIDKYSRIVFPVCFVCFNLMYWIIYLH 113
S +DK SRI+FPV F FNL+YW Y++
Sbjct: 453 SKVDKISRIIFPVLFAIFNLVYWATYVN 480
>sp|P10064|GBRA3_BOVIN Gamma-aminobutyric acid receptor subunit alpha-3 OS=Bos taurus
GN=GABRA3 PE=2 SV=1
Length = 492
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 21/28 (75%)
Query: 86 SDIDKYSRIVFPVCFVCFNLMYWIIYLH 113
S +DK SRI+FPV F FNL+YW Y++
Sbjct: 453 SKVDKISRIIFPVLFAIFNLVYWATYVN 480
>sp|P07727|GLRA1_RAT Glycine receptor subunit alpha-1 OS=Rattus norvegicus GN=Glra1 PE=1
SV=4
Length = 457
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 25/37 (67%)
Query: 75 KDINKLYGITPSDIDKYSRIVFPVCFVCFNLMYWIIY 111
+++ KL+ IDK SRI FP+ F+ FN+ YWIIY
Sbjct: 410 EEMRKLFIQRAKKIDKISRIGFPMAFLIFNMFYWIIY 446
>sp|P18505|GBRB1_HUMAN Gamma-aminobutyric acid receptor subunit beta-1 OS=Homo sapiens
GN=GABRB1 PE=2 SV=2
Length = 474
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 22/28 (78%)
Query: 86 SDIDKYSRIVFPVCFVCFNLMYWIIYLH 113
+ IDK+SR+ FP+ F FN++YW+ Y+H
Sbjct: 447 NSIDKWSRMFFPITFSLFNVVYWLYYVH 474
>sp|P08220|GBRB1_BOVIN Gamma-aminobutyric acid receptor subunit beta-1 OS=Bos taurus
GN=GABRB1 PE=2 SV=1
Length = 474
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 22/28 (78%)
Query: 86 SDIDKYSRIVFPVCFVCFNLMYWIIYLH 113
+ IDK+SR+ FP+ F FN++YW+ Y+H
Sbjct: 447 NSIDKWSRMFFPITFSLFNVVYWLYYVH 474
>sp|P15431|GBRB1_RAT Gamma-aminobutyric acid receptor subunit beta-1 OS=Rattus
norvegicus GN=Gabrb1 PE=2 SV=1
Length = 474
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 22/28 (78%)
Query: 86 SDIDKYSRIVFPVCFVCFNLMYWIIYLH 113
+ IDK+SR+ FP+ F FN++YW+ Y+H
Sbjct: 447 NSIDKWSRMFFPITFSLFNVVYWLYYVH 474
>sp|P50571|GBRB1_MOUSE Gamma-aminobutyric acid receptor subunit beta-1 OS=Mus musculus
GN=Gabrb1 PE=1 SV=1
Length = 474
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 22/28 (78%)
Query: 86 SDIDKYSRIVFPVCFVCFNLMYWIIYLH 113
+ IDK+SR+ FP+ F FN++YW+ Y+H
Sbjct: 447 NSIDKWSRMFFPITFSLFNVVYWLYYVH 474
>sp|P20236|GBRA3_RAT Gamma-aminobutyric acid receptor subunit alpha-3 OS=Rattus
norvegicus GN=Gabra3 PE=1 SV=1
Length = 493
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 21/28 (75%)
Query: 86 SDIDKYSRIVFPVCFVCFNLMYWIIYLH 113
S +DK SRI+FPV F FNL+YW Y++
Sbjct: 454 SKVDKISRIIFPVLFAIFNLVYWATYVN 481
>sp|P26049|GBRA3_MOUSE Gamma-aminobutyric acid receptor subunit alpha-3 OS=Mus musculus
GN=Gabra3 PE=1 SV=1
Length = 492
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 21/28 (75%)
Query: 86 SDIDKYSRIVFPVCFVCFNLMYWIIYLH 113
S +DK SRI+FPV F FNL+YW Y++
Sbjct: 453 SKVDKISRIIFPVLFAIFNLVYWATYVN 480
>sp|P20781|GLRB_RAT Glycine receptor subunit beta OS=Rattus norvegicus GN=Glrb PE=1
SV=1
Length = 496
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 15/25 (60%), Positives = 20/25 (80%)
Query: 88 IDKYSRIVFPVCFVCFNLMYWIIYL 112
ID Y+R +FP CF+ FN++YW IYL
Sbjct: 472 IDLYARALFPFCFLFFNVIYWSIYL 496
>sp|P48168|GLRB_MOUSE Glycine receptor subunit beta OS=Mus musculus GN=Glrb PE=1 SV=2
Length = 496
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 15/25 (60%), Positives = 20/25 (80%)
Query: 88 IDKYSRIVFPVCFVCFNLMYWIIYL 112
ID Y+R +FP CF+ FN++YW IYL
Sbjct: 472 IDLYARALFPFCFLFFNVIYWSIYL 496
>sp|P48167|GLRB_HUMAN Glycine receptor subunit beta OS=Homo sapiens GN=GLRB PE=1 SV=1
Length = 497
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 15/25 (60%), Positives = 20/25 (80%)
Query: 88 IDKYSRIVFPVCFVCFNLMYWIIYL 112
ID Y+R +FP CF+ FN++YW IYL
Sbjct: 473 IDLYARALFPFCFLFFNVIYWSIYL 497
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.141 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,473,612
Number of Sequences: 539616
Number of extensions: 2826948
Number of successful extensions: 7018
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 58
Number of HSP's that attempted gapping in prelim test: 6731
Number of HSP's gapped (non-prelim): 346
length of query: 129
length of database: 191,569,459
effective HSP length: 95
effective length of query: 34
effective length of database: 140,305,939
effective search space: 4770401926
effective search space used: 4770401926
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)