Query psy13804
Match_columns 129
No_of_seqs 177 out of 456
Neff 4.7
Searched_HMMs 46136
Date Fri Aug 16 20:54:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13804.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13804hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3643|consensus 99.1 3.2E-11 6.9E-16 105.4 4.2 30 84-113 430-459 (459)
2 KOG3642|consensus 99.1 7E-11 1.5E-15 103.6 3.0 40 80-119 424-463 (466)
3 KOG3644|consensus 98.9 9.1E-10 2E-14 96.6 2.9 30 84-113 427-456 (457)
4 PF02932 Neur_chan_memb: Neuro 98.7 9E-09 1.9E-13 73.4 3.4 28 81-108 210-237 (237)
5 TIGR00860 LIC Cation transport 97.3 9.2E-05 2E-09 64.5 1.6 29 83-111 431-459 (459)
6 PF15202 Adipogenin: Adipogeni 60.5 13 0.00027 25.9 3.2 29 94-122 21-49 (81)
7 PF08370 PDR_assoc: Plant PDR 55.2 15 0.00032 24.6 2.8 24 98-121 37-61 (65)
8 PF04750 Far-17a_AIG1: FAR-17a 52.0 10 0.00023 28.9 1.9 25 89-114 69-94 (201)
9 COG3924 Predicted membrane pro 47.6 29 0.00063 24.3 3.3 30 90-121 47-76 (80)
10 PF14293 YWFCY: YWFCY protein 41.4 28 0.0006 23.3 2.4 22 91-114 15-36 (61)
11 PF10740 DUF2529: Protein of u 38.9 13 0.00028 29.4 0.6 27 89-116 144-170 (172)
12 PHA00724 hypothetical protein 33.8 48 0.001 23.1 2.7 21 94-114 60-80 (83)
13 PF14715 FixP_N: N-terminal do 33.6 41 0.0009 21.4 2.2 23 91-114 23-45 (51)
14 TIGR03779 Bac_Flav_CT_M Bacter 32.6 32 0.0007 30.6 2.1 19 94-112 9-27 (410)
15 PF06716 DUF1201: Protein of u 31.9 65 0.0014 20.8 2.9 16 96-111 15-30 (54)
16 KOG3249|consensus 30.7 43 0.00093 26.7 2.3 21 91-111 120-140 (181)
17 COG4300 CadD Predicted permeas 29.6 43 0.00094 27.2 2.2 21 85-105 168-188 (205)
18 KOG3989|consensus 28.9 31 0.00067 28.3 1.3 31 88-119 77-108 (224)
19 PF12339 DNAJ_related: DNA-J r 28.7 49 0.0011 24.8 2.3 17 93-109 46-62 (132)
20 TIGR00782 ccoP cytochrome c ox 28.1 50 0.0011 27.0 2.4 25 90-115 28-52 (285)
21 PHA02690 hypothetical protein; 23.3 1E+02 0.0023 21.9 2.9 27 87-113 37-63 (90)
22 PF14393 DUF4422: Domain of un 21.5 80 0.0017 25.7 2.4 26 80-105 170-195 (231)
23 PF06638 Strabismus: Strabismu 21.3 90 0.002 28.6 2.9 22 93-114 167-188 (505)
24 PF06196 DUF997: Protein of un 20.9 1.4E+02 0.0031 20.5 3.2 30 90-121 47-76 (80)
No 1
>KOG3643|consensus
Probab=99.14 E-value=3.2e-11 Score=105.43 Aligned_cols=30 Identities=57% Similarity=1.154 Sum_probs=28.0
Q ss_pred CchhHHhHHHHHhhHHHHHHHHHHHHHhhh
Q psy13804 84 TPSDIDKYSRIVFPVCFVCFNLMYWIIYLH 113 (129)
Q Consensus 84 ~~~~ID~~SRi~FP~~F~iFNi~YW~~yl~ 113 (129)
.++.||+|||++||++|++||++||.||++
T Consensus 430 ~~~~IDkySR~~FP~~F~lFNivYW~yy~~ 459 (459)
T KOG3643|consen 430 DVSKIDKYSRIVFPLAFSLFNIVYWLYYMY 459 (459)
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHhheeeC
Confidence 388999999999999999999999999964
No 2
>KOG3642|consensus
Probab=99.06 E-value=7e-11 Score=103.59 Aligned_cols=40 Identities=50% Similarity=1.021 Sum_probs=34.4
Q ss_pred cccCCchhHHhHHHHHhhHHHHHHHHHHHHHhhhcccccc
Q psy13804 80 LYGITPSDIDKYSRIVFPVCFVCFNLMYWIIYLHISDVVA 119 (129)
Q Consensus 80 ~~~~~~~~ID~~SRi~FP~~F~iFNi~YW~~yl~~~~~~~ 119 (129)
.......+||+||||+||++|++||++||..||+++.++.
T Consensus 424 ~~~~~vskiD~~sRivFPv~F~~fNlvYW~~yL~~~~~i~ 463 (466)
T KOG3642|consen 424 RLYISVSKIDNYSRIVFPVLFILFNLVYWVVYLNLEPIIK 463 (466)
T ss_pred CcccchhhhhccchhhhHHHHHHHHHHHHhhhccccchhc
Confidence 3345778999999999999999999999999999865543
No 3
>KOG3644|consensus
Probab=98.88 E-value=9.1e-10 Score=96.58 Aligned_cols=30 Identities=47% Similarity=1.049 Sum_probs=28.4
Q ss_pred CchhHHhHHHHHhhHHHHHHHHHHHHHhhh
Q psy13804 84 TPSDIDKYSRIVFPVCFVCFNLMYWIIYLH 113 (129)
Q Consensus 84 ~~~~ID~~SRi~FP~~F~iFNi~YW~~yl~ 113 (129)
.+++||++||++||++|++||++||++|+.
T Consensus 427 ~~~~ID~~sr~~FP~~F~~FN~~YW~~y~~ 456 (457)
T KOG3644|consen 427 TAERIDRISRFLFPLLFLLFNIIYWTYYLK 456 (457)
T ss_pred chHHHhHHHHHHHHHHHHHHHHHHhhheEe
Confidence 688999999999999999999999999974
No 4
>PF02932 Neur_chan_memb: Neurotransmitter-gated ion-channel transmembrane region ion channel family signature gamma-aminobutyric acid (GABA) receptor signature nicotinic acetylcholine receptor signature; InterPro: IPR006029 Neurotransmitter ligand-gated ion channels are transmembrane receptor-ion channel complexes that open transiently upon binding of specific ligands, allowing rapid transmission of signals at chemical synapses [, ]. Five of these ion channel receptor families have been shown to form a sequence-related superfamily: Nicotinic acetylcholine receptor (AchR), an excitatory cation channel in vertebrates and invertebrates; in vertebrate motor endplates it is composed of alpha, beta, gamma and delta/epsilon subunits; in neurons it is composed of alpha and non-alpha (or beta) subunits []. Glycine receptor, an inhibitory chloride ion channel composed of alpha and beta subunits []. Gamma-aminobutyric acid (GABA) receptor, an inhibitory chloride ion channel; at least four types of subunits (alpha, beta, gamma and delta) are known []. Serotonin 5HT3 receptor, of which there are seven major types (5HT3-5HT7) []. Glutamate receptor, an excitatory cation channel of which at least three types have been described (kainate, N-methyl-D-aspartate (NMDA) and quisqualate) []. These receptors possess a pentameric structure (made up of varying subunits), surrounding a central pore. All known sequences of subunits from neurotransmitter-gated ion-channels are structurally related. They are composed of a large extracellular glycosylated N-terminal ligand-binding domain, followed by three hydrophobic transmembrane regions which form the ionic channel, followed by an intracellular region of variable length. A fourth hydrophobic region is found at the C-terminal of the sequence [, ]. This domain represents four transmembrane helices of a variety of neurotransmitter-gated ion-channels.; GO: 0006811 ion transport, 0016020 membrane; PDB: 1DXZ_A 3MRA_A 1EQ8_C 1OED_C 2PR9_P 1A11_A 1CEK_A 2BG9_E 2KSR_A 2K59_B ....
Probab=98.72 E-value=9e-09 Score=73.42 Aligned_cols=28 Identities=39% Similarity=0.988 Sum_probs=25.7
Q ss_pred ccCCchhHHhHHHHHhhHHHHHHHHHHH
Q psy13804 81 YGITPSDIDKYSRIVFPVCFVCFNLMYW 108 (129)
Q Consensus 81 ~~~~~~~ID~~SRi~FP~~F~iFNi~YW 108 (129)
+...+..||+++|++||++|++||++||
T Consensus 210 w~~~A~viDR~~~~~F~i~f~~~~i~yw 237 (237)
T PF02932_consen 210 WKFVAMVIDRLFRILFPIAFILFNIVYW 237 (237)
T ss_dssp HHSTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHhhhC
Confidence 3456889999999999999999999999
No 5
>TIGR00860 LIC Cation transporter family protein. selective while glycine receptors are anion selective).
Probab=97.32 E-value=9.2e-05 Score=64.47 Aligned_cols=29 Identities=45% Similarity=0.970 Sum_probs=26.8
Q ss_pred CCchhHHhHHHHHhhHHHHHHHHHHHHHh
Q psy13804 83 ITPSDIDKYSRIVFPVCFVCFNLMYWIIY 111 (129)
Q Consensus 83 ~~~~~ID~~SRi~FP~~F~iFNi~YW~~y 111 (129)
..+..||+++|++||++|++||++||.+|
T Consensus 431 ~~a~viDr~~~~~f~~~~~~~~~~~~~~y 459 (459)
T TIGR00860 431 FRAKVIDKLSRMAFPLAFLLFNIGYWMSY 459 (459)
T ss_pred hccchhhHHHHHHHHHHHHHhhhhheEeC
Confidence 45778999999999999999999999987
No 6
>PF15202 Adipogenin: Adipogenin
Probab=60.54 E-value=13 Score=25.90 Aligned_cols=29 Identities=28% Similarity=0.602 Sum_probs=23.5
Q ss_pred HHhhHHHHHHHHHHHHHhhhccccccccc
Q psy13804 94 IVFPVCFVCFNLMYWIIYLHISDVVADDL 122 (129)
Q Consensus 94 i~FP~~F~iFNi~YW~~yl~~~~~~~~~~ 122 (129)
+..|++.++|-++-|.-||.-.|..++|.
T Consensus 21 lclpv~lllfl~ivwlrfllsqdsee~ds 49 (81)
T PF15202_consen 21 LCLPVGLLLFLLIVWLRFLLSQDSEENDS 49 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHcccccccCc
Confidence 34589999999999999998777776654
No 7
>PF08370 PDR_assoc: Plant PDR ABC transporter associated; InterPro: IPR013581 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This domain is found on the C terminus of ABC-2 type transporter domains (IPR013525 from INTERPRO). It seems to be associated with the plant pleiotropic drug resistance (PDR) protein family of ABC transporters. Like in yeast, plant PDR ABC transporters may also play a role in the transport of antifungal agents [] (see also IPR010929 from INTERPRO). The PDR family is characterised by a configuration in which the ABC domain is nearer the N terminus of the protein than the transmembrane domain [].
Probab=55.16 E-value=15 Score=24.61 Aligned_cols=24 Identities=17% Similarity=0.386 Sum_probs=17.0
Q ss_pred HHH-HHHHHHHHHHhhhcccccccc
Q psy13804 98 VCF-VCFNLMYWIIYLHISDVVADD 121 (129)
Q Consensus 98 ~~F-~iFNi~YW~~yl~~~~~~~~~ 121 (129)
+.| ++||++|...-.++......+
T Consensus 37 ~G~~vlFNil~~laL~yL~p~~k~~ 61 (65)
T PF08370_consen 37 LGFIVLFNILFTLALTYLNPLGKSQ 61 (65)
T ss_pred HHHHHHHHHHHHHHHHhcCCcCCCC
Confidence 455 789999998877776555444
No 8
>PF04750 Far-17a_AIG1: FAR-17a/AIG1-like protein; InterPro: IPR006838 This entry includes the hamster androgen-induced FAR-17a protein (Q60534 from SWISSPROT) []. The function of these proteins is unknown but it is thought to have a central role in the fusion process during myogenesis, within the somatic mesoderm. This entry also includes homologous regions from a number of other metazoan proteins.; GO: 0016021 integral to membrane
Probab=51.98 E-value=10 Score=28.91 Aligned_cols=25 Identities=32% Similarity=0.740 Sum_probs=20.2
Q ss_pred HhH-HHHHhhHHHHHHHHHHHHHhhhc
Q psy13804 89 DKY-SRIVFPVCFVCFNLMYWIIYLHI 114 (129)
Q Consensus 89 D~~-SRi~FP~~F~iFNi~YW~~yl~~ 114 (129)
|.. +-++||+.+++. ++||..|+.-
T Consensus 69 ~~~~~~~~~pl~~~V~-~~yW~l~~~d 94 (201)
T PF04750_consen 69 DWLFYSLAFPLEFIVT-VVYWSLYLID 94 (201)
T ss_pred HHHHHHHHHHHHhcch-hhhhhHHhCC
Confidence 444 569999999998 9999999643
No 9
>COG3924 Predicted membrane protein [Function unknown]
Probab=47.57 E-value=29 Score=24.28 Aligned_cols=30 Identities=20% Similarity=0.507 Sum_probs=23.4
Q ss_pred hHHHHHhhHHHHHHHHHHHHHhhhcccccccc
Q psy13804 90 KYSRIVFPVCFVCFNLMYWIIYLHISDVVADD 121 (129)
Q Consensus 90 ~~SRi~FP~~F~iFNi~YW~~yl~~~~~~~~~ 121 (129)
..|-|..|++|++ ++||++=+...|+..+|
T Consensus 47 E~aCi~lPllFi~--l~~~mvkfif~DI~LEd 76 (80)
T COG3924 47 EMACILLPLLFIV--LCWAMVKFIFRDIPLED 76 (80)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHhhcCCCccc
Confidence 5788999999987 67888887777766544
No 10
>PF14293 YWFCY: YWFCY protein
Probab=41.37 E-value=28 Score=23.33 Aligned_cols=22 Identities=23% Similarity=0.762 Sum_probs=13.8
Q ss_pred HHHHHhhHHHHHHHHHHHHHhhhc
Q psy13804 91 YSRIVFPVCFVCFNLMYWIIYLHI 114 (129)
Q Consensus 91 ~SRi~FP~~F~iFNi~YW~~yl~~ 114 (129)
+.|. .-++|++.| +||.+|-.+
T Consensus 15 f~R~-iSI~~l~ih-~Y~~CY~af 36 (61)
T PF14293_consen 15 FMRA-ISILFLVIH-FYWFCYEAF 36 (61)
T ss_pred HHHH-HHHHHHHHH-HHHHHHHHH
Confidence 4453 356677776 588888533
No 11
>PF10740 DUF2529: Protein of unknown function (DUF2529); InterPro: IPR019676 This entry represents a protein family conserved in the Bacillales. Their function is not known. ; PDB: 3JX9_A.
Probab=38.85 E-value=13 Score=29.41 Aligned_cols=27 Identities=22% Similarity=0.550 Sum_probs=16.8
Q ss_pred HhHHHHHhhHHHHHHHHHHHHHhhhccc
Q psy13804 89 DKYSRIVFPVCFVCFNLMYWIIYLHISD 116 (129)
Q Consensus 89 D~~SRi~FP~~F~iFNi~YW~~yl~~~~ 116 (129)
|-++||.||.+.+ +|-+|..+|+.+.+
T Consensus 144 EdG~Rig~P~~~a-~lyiYy~l~~~~~E 170 (172)
T PF10740_consen 144 EDGDRIGFPHLMA-ALYIYYALYFTLDE 170 (172)
T ss_dssp TTS-EE---HHHH-HHHHHHHHHHHHHH
T ss_pred CCCCEecchHHHH-HHHHHHHHHHHHHh
Confidence 3489999999864 67888888876643
No 12
>PHA00724 hypothetical protein
Probab=33.76 E-value=48 Score=23.12 Aligned_cols=21 Identities=19% Similarity=0.499 Sum_probs=17.7
Q ss_pred HHhhHHHHHHHHHHHHHhhhc
Q psy13804 94 IVFPVCFVCFNLMYWIIYLHI 114 (129)
Q Consensus 94 i~FP~~F~iFNi~YW~~yl~~ 114 (129)
-++|++|-+.|..|..-++..
T Consensus 60 ~~lpl~fgl~n~~fffnwlre 80 (83)
T PHA00724 60 SFLPLAFGLINFAFFFNWLRE 80 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999998887754
No 13
>PF14715 FixP_N: N-terminal domain of cytochrome oxidase-cbb3, FixP
Probab=33.61 E-value=41 Score=21.40 Aligned_cols=23 Identities=17% Similarity=0.382 Sum_probs=15.1
Q ss_pred HHHHHhhHHHHHHHHHHHHHhhhc
Q psy13804 91 YSRIVFPVCFVCFNLMYWIIYLHI 114 (129)
Q Consensus 91 ~SRi~FP~~F~iFNi~YW~~yl~~ 114 (129)
.=.++|= +-++|-++||++|-..
T Consensus 23 ww~~~f~-~tivfa~~Y~~~yp~~ 45 (51)
T PF14715_consen 23 WWLWLFY-GTIVFAVGYLVLYPGL 45 (51)
T ss_pred HHHHHHH-HHHHHHHHHHHHHhcc
Confidence 3344443 3467889999999644
No 14
>TIGR03779 Bac_Flav_CT_M Bacteroides conjugative transposon TraM protein. Members of this protein family are designated TraM and are found in a proposed transfer region of a class of conjugative transposon found in the Bacteroides lineage.
Probab=32.65 E-value=32 Score=30.58 Aligned_cols=19 Identities=26% Similarity=0.639 Sum_probs=17.0
Q ss_pred HHhhHHHHHHHHHHHHHhh
Q psy13804 94 IVFPVCFVCFNLMYWIIYL 112 (129)
Q Consensus 94 i~FP~~F~iFNi~YW~~yl 112 (129)
++||++|++|-.+-|++|-
T Consensus 9 lV~~lm~l~flg~~wlIF~ 27 (410)
T TIGR03779 9 LVLPLMGLVFLGSLWLIFA 27 (410)
T ss_pred chHHHHHHHHHHHHHHhcc
Confidence 6899999999999998885
No 15
>PF06716 DUF1201: Protein of unknown function (DUF1201); InterPro: IPR009591 This entry consists of several Beet yellows virus (BYV) putative membrane-binding proteins of around 54 residues in length. The function of this currently unknown.
Probab=31.88 E-value=65 Score=20.82 Aligned_cols=16 Identities=31% Similarity=0.843 Sum_probs=8.8
Q ss_pred hhHHHHHHHHHHHHHh
Q psy13804 96 FPVCFVCFNLMYWIIY 111 (129)
Q Consensus 96 FP~~F~iFNi~YW~~y 111 (129)
|=+||++|.++|...+
T Consensus 15 ~lIC~Fl~~~~~F~~F 30 (54)
T PF06716_consen 15 FLICLFLFCLVVFIWF 30 (54)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3456666766654433
No 16
>KOG3249|consensus
Probab=30.65 E-value=43 Score=26.75 Aligned_cols=21 Identities=24% Similarity=0.368 Sum_probs=17.5
Q ss_pred HHHHHhhHHHHHHHHHHHHHh
Q psy13804 91 YSRIVFPVCFVCFNLMYWIIY 111 (129)
Q Consensus 91 ~SRi~FP~~F~iFNi~YW~~y 111 (129)
..|+-|=++|++|..+||+|+
T Consensus 120 a~~l~fGlvff~lSlf~~iy~ 140 (181)
T KOG3249|consen 120 AHRLDFGLVFFLLSLFSIIYL 140 (181)
T ss_pred HHHHHhhHHHHHHHHHHHhee
Confidence 457778999999999999654
No 17
>COG4300 CadD Predicted permease, cadmium resistance protein [Inorganic ion transport and metabolism]
Probab=29.60 E-value=43 Score=27.23 Aligned_cols=21 Identities=24% Similarity=0.532 Sum_probs=17.4
Q ss_pred chhHHhHHHHHhhHHHHHHHH
Q psy13804 85 PSDIDKYSRIVFPVCFVCFNL 105 (129)
Q Consensus 85 ~~~ID~~SRi~FP~~F~iFNi 105 (129)
.+.+.+|||+++|+.|+..-+
T Consensus 168 ~evlEk~sr~i~~~V~I~LGl 188 (205)
T COG4300 168 GEVLEKYSRWIVAFVYIGLGL 188 (205)
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 467999999999999877643
No 18
>KOG3989|consensus
Probab=28.88 E-value=31 Score=28.29 Aligned_cols=31 Identities=23% Similarity=0.570 Sum_probs=21.0
Q ss_pred HHhHHH-HHhhHHHHHHHHHHHHHhhhcccccc
Q psy13804 88 IDKYSR-IVFPVCFVCFNLMYWIIYLHISDVVA 119 (129)
Q Consensus 88 ID~~SR-i~FP~~F~iFNi~YW~~yl~~~~~~~ 119 (129)
-|-.++ +.||+.-++. ++||..|++-.+...
T Consensus 77 ~D~l~~tlafPv~~~V~-~~FW~Ly~~d~~Li~ 108 (224)
T KOG3989|consen 77 RDYLAATLAFPVEVIVT-VLFWGLYLYDRELLM 108 (224)
T ss_pred HHHHHHHHhchHHHhhh-hhhhhheeecHHHcC
Confidence 355555 6778776665 899999986554443
No 19
>PF12339 DNAJ_related: DNA-J related protein ; InterPro: IPR021059 This domain family is approximately 130 amino acids in length and contains a conserved YYLD sequence motif. The proteins have a C-terminal DNA-J domain PF00226 from PFAM and most of the sequences are annotated as DNA-J related proteins, other annotations include: DnaJ-class molecular chaperon and formate dehydrogenase; but there is currently no publications to support these annotations.
Probab=28.67 E-value=49 Score=24.84 Aligned_cols=17 Identities=29% Similarity=0.520 Sum_probs=14.2
Q ss_pred HHHhhHHHHHHHHHHHH
Q psy13804 93 RIVFPVCFVCFNLMYWI 109 (129)
Q Consensus 93 Ri~FP~~F~iFNi~YW~ 109 (129)
..+|..=|++||.+|=.
T Consensus 46 ~~LFk~hFLl~naLY~L 62 (132)
T PF12339_consen 46 LDLFKRHFLLFNALYQL 62 (132)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46899999999999843
No 20
>TIGR00782 ccoP cytochrome c oxidase, cbb3-type, subunit III. This model describes a di-heme subunit of approximately 26 kDa of the cbb3 type copper and heme-containing cytochrome oxidase.
Probab=28.14 E-value=50 Score=27.02 Aligned_cols=25 Identities=12% Similarity=0.285 Sum_probs=17.2
Q ss_pred hHHHHHhhHHHHHHHHHHHHHhhhcc
Q psy13804 90 KYSRIVFPVCFVCFNLMYWIIYLHIS 115 (129)
Q Consensus 90 ~~SRi~FP~~F~iFNi~YW~~yl~~~ 115 (129)
+.=.++|=++ +||-|+||++|-...
T Consensus 28 ~ww~~~f~~~-i~~~~~y~~~yp~~~ 52 (285)
T TIGR00782 28 RWWLWTFYAT-IVWGFGYLVAYPAWP 52 (285)
T ss_pred HHHHHHHHHH-HHHHHHHHHHhcccC
Confidence 3444555444 889999999995443
No 21
>PHA02690 hypothetical protein; Provisional
Probab=23.30 E-value=1e+02 Score=21.90 Aligned_cols=27 Identities=22% Similarity=0.438 Sum_probs=21.8
Q ss_pred hHHhHHHHHhhHHHHHHHHHHHHHhhh
Q psy13804 87 DIDKYSRIVFPVCFVCFNLMYWIIYLH 113 (129)
Q Consensus 87 ~ID~~SRi~FP~~F~iFNi~YW~~yl~ 113 (129)
-+-..-|.+|-++|.+|-++|-+.-+.
T Consensus 37 lLR~~~RlLfDL~lTvfV~myiv~Rl~ 63 (90)
T PHA02690 37 LLRQMWRLLFDLLLTVFVVMYIVFRLI 63 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355778999999999999998766543
No 22
>PF14393 DUF4422: Domain of unknown function (DUF4422)
Probab=21.50 E-value=80 Score=25.74 Aligned_cols=26 Identities=15% Similarity=0.296 Sum_probs=20.6
Q ss_pred cccCCchhHHhHHHHHhhHHHHHHHH
Q psy13804 80 LYGITPSDIDKYSRIVFPVCFVCFNL 105 (129)
Q Consensus 80 ~~~~~~~~ID~~SRi~FP~~F~iFNi 105 (129)
++...-+..|.||-++|+++|-+-.-
T Consensus 170 MfImkkelF~~Yc~wLF~ILfelek~ 195 (231)
T PF14393_consen 170 MFIMKKELFDEYCEWLFDILFELEKR 195 (231)
T ss_pred eeEcchHHHHHHHHHHHHHHHHHHHh
Confidence 34456678999999999999977544
No 23
>PF06638 Strabismus: Strabismus protein; InterPro: IPR009539 This family consists of several strabismus (STB) or Van Gogh-like (VANGL) proteins 1 and 2. The exact function of this family is unknown. It is thought, however that STB1 gene and STB2 may be potent tumour suppressor gene candidates [].; GO: 0007275 multicellular organismal development, 0016021 integral to membrane
Probab=21.26 E-value=90 Score=28.65 Aligned_cols=22 Identities=27% Similarity=0.537 Sum_probs=15.1
Q ss_pred HHHhhHHHHHHHHHHHHHhhhc
Q psy13804 93 RIVFPVCFVCFNLMYWIIYLHI 114 (129)
Q Consensus 93 Ri~FP~~F~iFNi~YW~~yl~~ 114 (129)
|.+.=++-++|-+.||.+|...
T Consensus 167 Ra~ll~Lvfl~~~syWLFY~vr 188 (505)
T PF06638_consen 167 RALLLVLVFLFLFSYWLFYGVR 188 (505)
T ss_pred HHHHHHHHHHHHHHHHHHhhhe
Confidence 4444455566778999999643
No 24
>PF06196 DUF997: Protein of unknown function (DUF997); InterPro: IPR010398 This is a family of predicted bacterial membrane protein with unknown function.
Probab=20.88 E-value=1.4e+02 Score=20.51 Aligned_cols=30 Identities=30% Similarity=0.533 Sum_probs=20.6
Q ss_pred hHHHHHhhHHHHHHHHHHHHHhhhcccccccc
Q psy13804 90 KYSRIVFPVCFVCFNLMYWIIYLHISDVVADD 121 (129)
Q Consensus 90 ~~SRi~FP~~F~iFNi~YW~~yl~~~~~~~~~ 121 (129)
-+|-|+.|++|++ ++|+.+-....|+..|+
T Consensus 47 ~~SCi~~~il~~~--l~~~~vk~~Fkd~~Ld~ 76 (80)
T PF06196_consen 47 FYSCIGGPILFII--LVWLMVKFFFKDIPLDD 76 (80)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHhhcCCCCc
Confidence 5788888888876 45556655666666554
Done!