Query psy13804
Match_columns 129
No_of_seqs 177 out of 456
Neff 4.7
Searched_HMMs 29240
Date Fri Aug 16 20:54:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13804.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13804hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rhw_A Avermectin-sensitive gl 97.4 0.0001 3.6E-09 59.8 3.7 30 84-113 311-340 (347)
2 3tlw_A GLR4197 protein, GLIC; 95.0 0.016 5.4E-07 46.3 3.6 27 86-112 293-319 (321)
3 2bg9_B Acetylcholine receptor 66.0 4.3 0.00015 33.0 3.2 28 81-108 329-356 (370)
4 2bg9_E Acetylcholine receptor 63.2 4.9 0.00017 32.6 3.1 25 83-107 335-359 (370)
5 2bg9_C Acetylcholine receptor 51.4 10 0.00034 30.8 3.0 26 83-108 333-358 (369)
6 2bg9_A Acetylcholine receptor 50.9 10 0.00034 30.7 3.0 27 81-107 332-358 (370)
7 3mk7_C Cytochrome C oxidase, C 14.5 94 0.0032 24.3 2.4 15 98-112 63-77 (311)
8 3rfu_A Copper efflux ATPase; a 10.8 2.1E+02 0.0072 25.5 3.8 25 86-110 334-360 (736)
9 1hll_A Alpha-2A adrenergic rec 10.3 1.2E+02 0.004 15.1 1.3 15 85-99 9-23 (32)
10 2ksr_A Neuronal acetylcholine 10.1 1.6E+02 0.0056 21.5 2.4 21 83-103 131-151 (164)
No 1
>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane protein, transport protein, Cys-loop receptor, LIGA ION channel, neurotransmitter receptor; HET: NAG IVM LMT UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A* 3rif_A*
Probab=97.38 E-value=0.0001 Score=59.80 Aligned_cols=30 Identities=40% Similarity=0.855 Sum_probs=27.0
Q ss_pred CchhHHhHHHHHhhHHHHHHHHHHHHHhhh
Q psy13804 84 TPSDIDKYSRIVFPVCFVCFNLMYWIIYLH 113 (129)
Q Consensus 84 ~~~~ID~~SRi~FP~~F~iFNi~YW~~yl~ 113 (129)
.+..+|+++|++||++|++||+.||..|-.
T Consensus 311 ~~~~~~~~~~~~~p~~~~i~n~~~~~~~~~ 340 (347)
T 3rhw_A 311 ISKRVDLISRALFPVLFFVFNILYWSRFGH 340 (347)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 467799999999999999999999998853
No 2
>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein, transport protei; HET: LMT; 2.60A {Gloeobacter violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A* 3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A* 3eam_A* 4f8h_A* 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A ...
Probab=95.05 E-value=0.016 Score=46.27 Aligned_cols=27 Identities=33% Similarity=0.697 Sum_probs=23.9
Q ss_pred hhHHhHHHHHhhHHHHHHHHHHHHHhh
Q psy13804 86 SDIDKYSRIVFPVCFVCFNLMYWIIYL 112 (129)
Q Consensus 86 ~~ID~~SRi~FP~~F~iFNi~YW~~yl 112 (129)
..+|++.|++||++|+++|++|+.++.
T Consensus 293 ~~~p~w~r~~fp~~f~~~~~i~~~~~~ 319 (321)
T 3tlw_A 293 ASITRASRIAFPVVFLLANIILAFLFF 319 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccChhheeeehHHHHHHHHHHHhhhc
Confidence 489999999999999999999887653
No 3
>2bg9_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}
Probab=65.97 E-value=4.3 Score=32.96 Aligned_cols=28 Identities=7% Similarity=0.024 Sum_probs=23.7
Q ss_pred ccCCchhHHhHHHHHhhHHHHHHHHHHH
Q psy13804 81 YGITPSDIDKYSRIVFPVCFVCFNLMYW 108 (129)
Q Consensus 81 ~~~~~~~ID~~SRi~FP~~F~iFNi~YW 108 (129)
+..-+..||+++.++|+++|++++++.-
T Consensus 329 W~~~a~v~Dr~~~~~f~~~~~~~t~~i~ 356 (370)
T 2bg9_B 329 WQYVAMVADRLFLYIFITMCSIGTFSIF 356 (370)
T ss_dssp HHSCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345788999999999999999998744
No 4
>2bg9_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}
Probab=63.24 E-value=4.9 Score=32.57 Aligned_cols=25 Identities=20% Similarity=0.053 Sum_probs=21.8
Q ss_pred CCchhHHhHHHHHhhHHHHHHHHHH
Q psy13804 83 ITPSDIDKYSRIVFPVCFVCFNLMY 107 (129)
Q Consensus 83 ~~~~~ID~~SRi~FP~~F~iFNi~Y 107 (129)
.-+..||+++.++|+++|++.+++-
T Consensus 335 ~~a~vlDr~~~~~f~~~~~~~t~~i 359 (370)
T 2bg9_E 335 LIGKVIDKACFWIALLLFSLGTLAI 359 (370)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578899999999999999998873
No 5
>2bg9_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}
Probab=51.42 E-value=10 Score=30.76 Aligned_cols=26 Identities=15% Similarity=0.294 Sum_probs=22.5
Q ss_pred CCchhHHhHHHHHhhHHHHHHHHHHH
Q psy13804 83 ITPSDIDKYSRIVFPVCFVCFNLMYW 108 (129)
Q Consensus 83 ~~~~~ID~~SRi~FP~~F~iFNi~YW 108 (129)
.-+..||+++.++|+++|++.+++.-
T Consensus 333 ~~a~vlDr~~~~~f~~~~~~~~~~i~ 358 (369)
T 2bg9_C 333 LVGQTIDRLSMFIITPVMVLGTIFIF 358 (369)
T ss_dssp HCCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778999999999999999998744
No 6
>2bg9_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}
Probab=50.89 E-value=10 Score=30.71 Aligned_cols=27 Identities=15% Similarity=0.076 Sum_probs=22.0
Q ss_pred ccCCchhHHhHHHHHhhHHHHHHHHHH
Q psy13804 81 YGITPSDIDKYSRIVFPVCFVCFNLMY 107 (129)
Q Consensus 81 ~~~~~~~ID~~SRi~FP~~F~iFNi~Y 107 (129)
+..-+..||+++.++|+++|++.-++.
T Consensus 332 W~~~a~vlDr~~~~~f~~~~~~~t~~i 358 (370)
T 2bg9_A 332 WKYVAMVIDHILLCVFMLICIIGTVSV 358 (370)
T ss_dssp TTSCSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344578899999999999998887663
No 7
>3mk7_C Cytochrome C oxidase, CBB3-type, subunit P; TM helices, oxidoreductase; HET: HEM HEC FC6; 3.20A {Pseudomonas stutzeri}
Probab=14.51 E-value=94 Score=24.30 Aligned_cols=15 Identities=20% Similarity=0.716 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHhh
Q psy13804 98 VCFVCFNLMYWIIYL 112 (129)
Q Consensus 98 ~~F~iFNi~YW~~yl 112 (129)
++-++|-++||++|-
T Consensus 63 ~~~iv~~~~y~~~yp 77 (311)
T 3mk7_C 63 IGTLVFGILYLVLYP 77 (311)
T ss_dssp HHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHh
Confidence 334788999999997
No 8
>3rfu_A Copper efflux ATPase; alpha helical, CPC, CXXC, ATP-binding, hydrolase, ION transp magnesium, Cu+, membrane, metal-binding; 3.20A {Legionella pneumophila subsp}
Probab=10.83 E-value=2.1e+02 Score=25.51 Aligned_cols=25 Identities=20% Similarity=0.347 Sum_probs=18.0
Q ss_pred hhHHhHHHHHhhHHHHHHHH--HHHHH
Q psy13804 86 SDIDKYSRIVFPVCFVCFNL--MYWII 110 (129)
Q Consensus 86 ~~ID~~SRi~FP~~F~iFNi--~YW~~ 110 (129)
..+|+++++++|+.+++.-+ ++|.+
T Consensus 334 ~~~d~~a~~~v~~vl~ia~~~~~~w~~ 360 (736)
T 3rfu_A 334 RLADTVSGWFVPAVILVAVLSFIVWAL 360 (736)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56999999999988755443 44543
No 9
>1hll_A Alpha-2A adrenergic receptor; helix-linker-helix, membrane protein; NMR {Synthetic} SCOP: j.94.1.1 PDB: 1hof_A 1ho9_A 1hod_A
Probab=10.34 E-value=1.2e+02 Score=15.13 Aligned_cols=15 Identities=20% Similarity=0.341 Sum_probs=11.9
Q ss_pred chhHHhHHHHHhhHH
Q psy13804 85 PSDIDKYSRIVFPVC 99 (129)
Q Consensus 85 ~~~ID~~SRi~FP~~ 99 (129)
.-.+|+|--|+.|+-
T Consensus 9 ~is~dRy~aI~~Pl~ 23 (32)
T 1hll_A 9 AISLDRYWSITQAIE 23 (32)
T ss_dssp HHHTHHHHHHHHHHG
T ss_pred HHHHHHHHHhhhhhh
Confidence 456899999999874
No 10
>2ksr_A Neuronal acetylcholine receptor subunit beta-2; nicotinic acetylcholine receptors, transmembrane domain, HFI junction, cell membrane; NMR {Homo sapiens} PDB: 2lm2_A
Probab=10.11 E-value=1.6e+02 Score=21.45 Aligned_cols=21 Identities=19% Similarity=0.080 Sum_probs=16.7
Q ss_pred CCchhHHhHHHHHhhHHHHHH
Q psy13804 83 ITPSDIDKYSRIVFPVCFVCF 103 (129)
Q Consensus 83 ~~~~~ID~~SRi~FP~~F~iF 103 (129)
.-+..+|++..++|++++++=
T Consensus 131 ~~a~v~Dr~~l~~f~~~~~~~ 151 (164)
T 2ksr_A 131 YVAMVIDRLFLWIFVFVCVFG 151 (164)
T ss_dssp STTHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 356889999999999877543
Done!