RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy13804
         (129 letters)



>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein,
           transport protei; HET: LMT; 2.60A {Gloeobacter
           violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A*
           3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A*
           3eam_A* 3ehz_A 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A
           ...
          Length = 321

 Score = 42.6 bits (101), Expect = 8e-06
 Identities = 9/25 (36%), Positives = 15/25 (60%)

Query: 88  IDKYSRIVFPVCFVCFNLMYWIIYL 112
           I + SRI FPV F+  N++   ++ 
Sbjct: 295 ITRASRIAFPVVFLLANIILAFLFF 319


>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane
           protein, transport protein, Cys-loop receptor, LIGA ION
           channel, neurotransmitter receptor; HET: NAG IVM LMT
           UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A*
           3rif_A*
          Length = 347

 Score = 42.5 bits (100), Expect = 1e-05
 Identities = 12/26 (46%), Positives = 17/26 (65%)

Query: 88  IDKYSRIVFPVCFVCFNLMYWIIYLH 113
           +D  SR +FPV F  FN++YW  + H
Sbjct: 315 VDLISRALFPVLFFVFNILYWSRFGH 340


>3rqw_A ELIC pentameric ligand gated ION channel from ERW chrysanthemi;
           membrane, transport protein; HET: ACH MES; 2.91A
           {Dickeya dadantii} PDB: 3rqu_A* 3uq4_A 3uq5_A 3uq7_A
           2vl0_A 2yks_A
          Length = 322

 Score = 29.2 bits (66), Expect = 0.30
 Identities = 5/23 (21%), Positives = 11/23 (47%)

Query: 87  DIDKYSRIVFPVCFVCFNLMYWI 109
            + +  R+ FP+ F+    +  I
Sbjct: 295 LLIQRCRLAFPLGFLAIGCVLVI 317


>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics,
           riken structural genomics/proteomics initiative, RSGI;
           NMR {Arabidopsis thaliana} SCOP: b.142.1.2
          Length = 130

 Score = 25.5 bits (55), Expect = 4.1
 Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 2/37 (5%)

Query: 73  PGKDINKLYG--ITPSDIDKYSRIVFPVCFVCFNLMY 107
            G+    L+   +TPSD+ K +R+V P      +   
Sbjct: 6   SGRSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPL 42


>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta
           protein., structural genomics, PSI-2, protein structure
           initiative; HET: G3D; 2.20A {Bacillus subtilis} PDB:
           2axp_A*
          Length = 173

 Score = 24.7 bits (54), Expect = 8.3
 Identities = 3/25 (12%), Positives = 12/25 (48%)

Query: 2   AKRIQMRKNRFMALQKVAEQKKTIE 26
            KR+++R + ++  + +    +   
Sbjct: 109 KKRLRVRGDEYIEGKDIDSILELYR 133


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.319    0.141    0.432 

Gapped
Lambda     K      H
   0.267   0.0509    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,153,233
Number of extensions: 129875
Number of successful extensions: 266
Number of sequences better than 10.0: 1
Number of HSP's gapped: 266
Number of HSP's successfully gapped: 10
Length of query: 129
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 46
Effective length of database: 4,384,350
Effective search space: 201680100
Effective search space used: 201680100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.3 bits)