Query psy13806
Match_columns 97
No_of_seqs 113 out of 1014
Neff 7.1
Searched_HMMs 29240
Date Fri Aug 16 20:58:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13806.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13806hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2v26_A Myosin VI; calmodulin-b 100.0 2.8E-33 9.5E-38 227.0 5.8 87 9-95 448-534 (784)
2 1lkx_A Myosin IE heavy chain; 100.0 2.9E-33 1E-37 224.6 5.2 87 9-95 382-468 (697)
3 4anj_A Unconventional myosin-V 100.0 1.6E-32 5.4E-37 227.5 5.8 87 9-95 452-538 (1052)
4 1w7j_A Myosin VA; motor protei 100.0 2.2E-32 7.6E-37 221.9 6.0 86 9-95 433-518 (795)
5 1w9i_A Myosin II heavy chain; 100.0 4.3E-32 1.5E-36 219.6 5.6 87 9-95 450-538 (770)
6 4db1_A Myosin-7; S1DC, cardiac 100.0 4.1E-32 1.4E-36 220.0 4.4 86 9-95 457-543 (783)
7 1kk8_A Myosin heavy chain, str 100.0 6.9E-32 2.3E-36 220.0 4.3 86 9-95 456-542 (837)
8 2dfs_A Myosin-5A; myosin-V, in 100.0 1.5E-31 5.2E-36 222.3 5.3 86 9-95 433-518 (1080)
9 2ycu_A Non muscle myosin 2C, a 100.0 2.2E-31 7.6E-36 219.9 5.0 87 9-95 429-518 (995)
10 1g8x_A Myosin II heavy chain f 100.0 4.3E-31 1.5E-35 218.5 5.7 87 9-95 450-538 (1010)
11 1i84_S Smooth muscle myosin he 100.0 7.9E-31 2.7E-35 219.0 4.5 87 9-95 460-549 (1184)
12 1y4m_A HERV-FRD_6P24.1 proviru 38.9 6.1 0.00021 21.7 -0.1 26 67-92 25-50 (53)
13 1mof_A Moloney murine leukemia 34.2 7.4 0.00025 21.5 -0.2 26 67-92 27-52 (55)
No 1
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=99.97 E-value=2.8e-33 Score=226.96 Aligned_cols=87 Identities=33% Similarity=0.584 Sum_probs=84.7
Q ss_pred HHhhhhhccccccCCchhhhHHhhhhhHHHHHHHHhhhhhHHHHhhhcCCcccccccCCcHhHHHHHhcCCCcccccchH
Q psy13806 9 LHASKRINTRPTVSDFFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDD 88 (97)
Q Consensus 9 ~~~~~~~gfe~~~~NsfeqlciN~~nE~Lq~~~~~~~f~~e~~ey~~Egi~~~~i~~~dn~~~ldli~~~p~GllslLDe 88 (97)
+++.|++|||.++.|||||||||||||+||++|++++|+.||++|.+|||.|..++|.||++|+|||++||.|||+||||
T Consensus 448 IGvLDI~GFE~f~~NsFEQlcINyaNEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~DN~~~idLie~kp~GIlslLDE 527 (784)
T 2v26_A 448 IGVLDIAGFEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGILDILDE 527 (784)
T ss_dssp EEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTCCCCCCCCCCCHHHHHHHHCTTTSHHHHHHH
T ss_pred eeecccCCcccCCcCCHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCcccccccChHHHHHHHhhccccHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcCC
Q psy13806 89 QAKQNGF 95 (97)
Q Consensus 89 ec~~Pk~ 95 (97)
||++|++
T Consensus 528 e~~~p~~ 534 (784)
T 2v26_A 528 ENRLPQP 534 (784)
T ss_dssp HHHSSSC
T ss_pred HhcCCCC
Confidence 9999986
No 2
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=99.97 E-value=2.9e-33 Score=224.62 Aligned_cols=87 Identities=36% Similarity=0.539 Sum_probs=84.6
Q ss_pred HHhhhhhccccccCCchhhhHHhhhhhHHHHHHHHhhhhhHHHHhhhcCCcccccccCCcHhHHHHHhcCCCcccccchH
Q psy13806 9 LHASKRINTRPTVSDFFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDD 88 (97)
Q Consensus 9 ~~~~~~~gfe~~~~NsfeqlciN~~nE~Lq~~~~~~~f~~e~~ey~~Egi~~~~i~~~dn~~~ldli~~~p~GllslLDe 88 (97)
+++.|++|||.++.|||||||||||||+||++|++++|+.||++|.+|||.|..++|.||++|+|||++||.|||++|||
T Consensus 382 IGvLDI~GFE~f~~NsFEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~dN~~~idLie~kp~GilslLDE 461 (697)
T 1lkx_A 382 IGILDIYGFEVFQNNSFEQLNINFCNEKLQQLFIELTLKSEQEEYVREGIEWKNIEYFNNKPICELIEKKPIGLISLLDE 461 (697)
T ss_dssp EEEEECCCCCCCSSBCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCCCSCCCHHHHHTTSSSSSHHHHHHH
T ss_pred EEeeccccccccCcCCHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCcccccCCCCCHHHHHHHhcccCChhhhhHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcCC
Q psy13806 89 QAKQNGF 95 (97)
Q Consensus 89 ec~~Pk~ 95 (97)
||++|++
T Consensus 462 ec~~p~~ 468 (697)
T 1lkx_A 462 ACLIAKS 468 (697)
T ss_dssp HHHSTTC
T ss_pred hhCCCCC
Confidence 9999985
No 3
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=99.97 E-value=1.6e-32 Score=227.50 Aligned_cols=87 Identities=33% Similarity=0.584 Sum_probs=84.8
Q ss_pred HHhhhhhccccccCCchhhhHHhhhhhHHHHHHHHhhhhhHHHHhhhcCCcccccccCCcHhHHHHHhcCCCcccccchH
Q psy13806 9 LHASKRINTRPTVSDFFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDD 88 (97)
Q Consensus 9 ~~~~~~~gfe~~~~NsfeqlciN~~nE~Lq~~~~~~~f~~e~~ey~~Egi~~~~i~~~dn~~~ldli~~~p~GllslLDe 88 (97)
+++.|++|||.++.|||||||||||||+||++|++++|+.||++|.+|||.|..++|.||++|+|||+++|.|||++|||
T Consensus 452 IGILDI~GFE~f~~NsFEQLCINyaNEkLQq~Fn~~vF~~EqeeY~~EgI~w~~I~f~DN~~~idLie~kp~GIl~lLDE 531 (1052)
T 4anj_A 452 IGVLDIAGFEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGILDILDE 531 (1052)
T ss_dssp EEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTCCCCCCCCCCCHHHHHHHHCTTTSHHHHHHH
T ss_pred EEEEecCCCcccccCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCcccCCcCCcHHHHHHHHcCcccHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcCC
Q psy13806 89 QAKQNGF 95 (97)
Q Consensus 89 ec~~Pk~ 95 (97)
||++|++
T Consensus 532 e~~~p~~ 538 (1052)
T 4anj_A 532 ENRLPQP 538 (1052)
T ss_dssp HHHSSSC
T ss_pred HhcCCCC
Confidence 9999985
No 4
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=99.97 E-value=2.2e-32 Score=221.92 Aligned_cols=86 Identities=45% Similarity=0.689 Sum_probs=83.3
Q ss_pred HHhhhhhccccccCCchhhhHHhhhhhHHHHHHHHhhhhhHHHHhhhcCCcccccccCCcHhHHHHHhcCCCcccccchH
Q psy13806 9 LHASKRINTRPTVSDFFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDD 88 (97)
Q Consensus 9 ~~~~~~~gfe~~~~NsfeqlciN~~nE~Lq~~~~~~~f~~e~~ey~~Egi~~~~i~~~dn~~~ldli~~~p~GllslLDe 88 (97)
+++.|++|||.++.|||||||||||||+||++|++++|+.||++|.+|||+|..++|.||++|+|||++| .|||+||||
T Consensus 433 IGvLDI~GFE~f~~NsFEQlcINyaNEkLQq~Fn~~~F~~EqeeY~~EgI~w~~i~f~DN~~~idLie~~-~GIlslLDE 511 (795)
T 1w7j_A 433 IGVLDIYGFETFEINSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIEAK-MGVLDLLDE 511 (795)
T ss_dssp EEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCCCCCHHHHHHHHST-TSHHHHHHH
T ss_pred EEeeccCcccccCcCCHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcCCcccccCccccHHHHHHHHhc-CCHHHhhhh
Confidence 4678999999999999999999999999999999999999999999999999999999999999999986 999999999
Q ss_pred HhhhcCC
Q psy13806 89 QAKQNGF 95 (97)
Q Consensus 89 ec~~Pk~ 95 (97)
||++|++
T Consensus 512 ec~~p~~ 518 (795)
T 1w7j_A 512 ECKMPKG 518 (795)
T ss_dssp HHTSTTC
T ss_pred hccCCCC
Confidence 9999986
No 5
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=99.97 E-value=4.3e-32 Score=219.59 Aligned_cols=87 Identities=41% Similarity=0.726 Sum_probs=83.3
Q ss_pred HHhhhhhccccccCCchhhhHHhhhhhHHHHHHHHhhhhhHHHHhhhcCCccccccc-CCcHhHHHHHhcC-CCcccccc
Q psy13806 9 LHASKRINTRPTVSDFFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGK-PNGLLCVL 86 (97)
Q Consensus 9 ~~~~~~~gfe~~~~NsfeqlciN~~nE~Lq~~~~~~~f~~e~~ey~~Egi~~~~i~~-~dn~~~ldli~~~-p~GllslL 86 (97)
+++.|++|||.++.|||||||||||||+||++|++++|..||++|.+|||.|..++| .||++|+|||+++ |.|||++|
T Consensus 450 IGvLDI~GFE~F~~NsFEQlCINyaNEkLQq~Fn~~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idLiek~~p~GilslL 529 (770)
T 1w9i_A 450 IGVLDIYGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGILALL 529 (770)
T ss_dssp EEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCGGGGGHHHHHHHHCTTTTCHHHHH
T ss_pred eeeccCccccccccCCHHHHHHHhhHHHHHHHHHhhhhHHHHHHhhccCCCceeeccccCcHHHHHHHhCCCCCchhhhh
Confidence 467899999999999999999999999999999999999999999999999999999 5999999999984 99999999
Q ss_pred hHHhhhcCC
Q psy13806 87 DDQAKQNGF 95 (97)
Q Consensus 87 Deec~~Pk~ 95 (97)
||||++|++
T Consensus 530 DEec~~p~~ 538 (770)
T 1w9i_A 530 DEQSVFPNA 538 (770)
T ss_dssp HHHHSSSSC
T ss_pred hhhhCCCCC
Confidence 999999985
No 6
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=99.97 E-value=4.1e-32 Score=220.01 Aligned_cols=86 Identities=40% Similarity=0.718 Sum_probs=81.6
Q ss_pred HHhhhhhccccccCCchhhhHHhhhhhHHHHHHHHhhhhhHHHHhhhcCCccccccc-CCcHhHHHHHhcCCCcccccch
Q psy13806 9 LHASKRINTRPTVSDFFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKPNGLLCVLD 87 (97)
Q Consensus 9 ~~~~~~~gfe~~~~NsfeqlciN~~nE~Lq~~~~~~~f~~e~~ey~~Egi~~~~i~~-~dn~~~ldli~~~p~GllslLD 87 (97)
+++.|++|||.++.|||||||||||||+||++|++++|+.||++|.+|||.|..++| .||++|+|||++ |.|||++||
T Consensus 457 IGvLDI~GFE~f~~NsFEQlCINyaNEkLQq~Fn~~~F~~EqeeY~~EgI~w~~i~f~~Dn~~~idLiek-p~Gil~lLD 535 (783)
T 4db1_A 457 IGVLDIAGFEIFDFNSFEQLCINFTNEKLQQFFNHHMFVLEQEEYKKEGIEWTFIDFGMDLQACIDLIEK-PMGIMSILE 535 (783)
T ss_dssp EEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCGGGGGHHHHHHHHS-TTSHHHHHC
T ss_pred EEEeccccccccccCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCcccccccCChHHHHHHHhC-CCchHhhhh
Confidence 567899999999999999999999999999999999999999999999999999999 599999999996 899999999
Q ss_pred HHhhhcCC
Q psy13806 88 DQAKQNGF 95 (97)
Q Consensus 88 eec~~Pk~ 95 (97)
|||++|++
T Consensus 536 Eec~~p~~ 543 (783)
T 4db1_A 536 EECMFPKA 543 (783)
T ss_dssp C-TTCTTC
T ss_pred HHhcCCCC
Confidence 99999986
No 7
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=99.97 E-value=6.9e-32 Score=219.96 Aligned_cols=86 Identities=42% Similarity=0.745 Sum_probs=82.8
Q ss_pred HHhhhhhccccccCCchhhhHHhhhhhHHHHHHHHhhhhhHHHHhhhcCCccccccc-CCcHhHHHHHhcCCCcccccch
Q psy13806 9 LHASKRINTRPTVSDFFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKPNGLLCVLD 87 (97)
Q Consensus 9 ~~~~~~~gfe~~~~NsfeqlciN~~nE~Lq~~~~~~~f~~e~~ey~~Egi~~~~i~~-~dn~~~ldli~~~p~GllslLD 87 (97)
+++.|++|||.++.|||||||||||||+||++|++++|..||+||.+|||.|..++| .||++|+|||++ |.|||++||
T Consensus 456 IGvLDI~GFE~f~~NsFEQlcINyaNEkLQq~Fn~~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idLiek-p~GIlslLD 534 (837)
T 1kk8_A 456 IGVLDIAGFEIFDFNSFEQLCINYTNERLQQFFNHHMFILEQEEYKKEGIAWEFIDFGMDLQMCIDLIEK-PMGILSILE 534 (837)
T ss_dssp EEEEECCCCCCCSSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSCCCCHHHHHHHHHHHS-TTSHHHHHH
T ss_pred EEEEecCCccccccccHHHHHHHHhhHHHHHHHHHhhhHHHHHHhhhcCCceeecccccCHHHHHHHHhc-CCcHHHHHH
Confidence 567899999999999999999999999999999999999999999999999999999 599999999996 899999999
Q ss_pred HHhhhcCC
Q psy13806 88 DQAKQNGF 95 (97)
Q Consensus 88 eec~~Pk~ 95 (97)
|||++|++
T Consensus 535 Eec~~p~~ 542 (837)
T 1kk8_A 535 EECMFPKA 542 (837)
T ss_dssp HHTTCTTC
T ss_pred HHhcCCCC
Confidence 99999985
No 8
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=99.97 E-value=1.5e-31 Score=222.27 Aligned_cols=86 Identities=45% Similarity=0.689 Sum_probs=83.3
Q ss_pred HHhhhhhccccccCCchhhhHHhhhhhHHHHHHHHhhhhhHHHHhhhcCCcccccccCCcHhHHHHHhcCCCcccccchH
Q psy13806 9 LHASKRINTRPTVSDFFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDD 88 (97)
Q Consensus 9 ~~~~~~~gfe~~~~NsfeqlciN~~nE~Lq~~~~~~~f~~e~~ey~~Egi~~~~i~~~dn~~~ldli~~~p~GllslLDe 88 (97)
+++.|++|||.|+.|||||||||||||+||++|++++|..|+++|.+|||.|..++|.||++|+|||++| .|||+||||
T Consensus 433 IgvLDI~GFE~f~~NsFEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~dn~~~idlie~~-~Gil~lLde 511 (1080)
T 2dfs_A 433 IGVLDIYGFETFEINSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIEAK-MGVLDLLDE 511 (1080)
T ss_dssp EEEEEECCCCCCSSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCCCCCCCHHHHHHHHST-TSHHHHHHH
T ss_pred EEeeccCCccccCcCCHHHHHHHhhhHHHHHHHHHHhhHHHHHHHhhcCCccccccccccHHHHHHHhcC-Cceeeeccc
Confidence 5678999999999999999999999999999999999999999999999999999999999999999986 999999999
Q ss_pred HhhhcCC
Q psy13806 89 QAKQNGF 95 (97)
Q Consensus 89 ec~~Pk~ 95 (97)
||++|++
T Consensus 512 e~~~p~~ 518 (1080)
T 2dfs_A 512 ECKMPKG 518 (1080)
T ss_dssp HTTSTTC
T ss_pred cccCCCC
Confidence 9999986
No 9
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=99.97 E-value=2.2e-31 Score=219.92 Aligned_cols=87 Identities=41% Similarity=0.681 Sum_probs=83.5
Q ss_pred HHhhhhhccccccCCchhhhHHhhhhhHHHHHHHHhhhhhHHHHhhhcCCccccccc-CCcHhHHHHHhc--CCCccccc
Q psy13806 9 LHASKRINTRPTVSDFFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEG--KPNGLLCV 85 (97)
Q Consensus 9 ~~~~~~~gfe~~~~NsfeqlciN~~nE~Lq~~~~~~~f~~e~~ey~~Egi~~~~i~~-~dn~~~ldli~~--~p~Gllsl 85 (97)
+++.|++|||.|+.|||||||||||||+||++|++++|..||++|.+|||.|..++| .||++|+|||++ +|.|||++
T Consensus 429 IgvLDI~GFE~f~~NsfEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idlie~~~~p~Gil~l 508 (995)
T 2ycu_A 429 LGILDIAGFEIFQLNSFEQLCINYTNEKLQQLFNHTMFVLEQEEYQREGIPWTFLDFGLDLQPCIDLIERPANPPGLLAL 508 (995)
T ss_dssp EEEEECCCBCCCSSBCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCCCSCCCHHHHHHHHCCSSSCCHHHH
T ss_pred EEEeccccccccccchHHHHHHHhhHHHHHHHHHHhhhHHHHHHHhccCCCccccccccChHHHHHHHhccCCCCchhhh
Confidence 567899999999999999999999999999999999999999999999999999999 699999999998 48999999
Q ss_pred chHHhhhcCC
Q psy13806 86 LDDQAKQNGF 95 (97)
Q Consensus 86 LDeec~~Pk~ 95 (97)
|||||++|++
T Consensus 509 Ldee~~~p~~ 518 (995)
T 2ycu_A 509 LDEECWFPKA 518 (995)
T ss_dssp HHHSSSSTTC
T ss_pred hHHHhcCCCC
Confidence 9999999985
No 10
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=99.96 E-value=4.3e-31 Score=218.48 Aligned_cols=87 Identities=41% Similarity=0.713 Sum_probs=83.5
Q ss_pred HHhhhhhccccccCCchhhhHHhhhhhHHHHHHHHhhhhhHHHHhhhcCCccccccc-CCcHhHHHHHhc-CCCcccccc
Q psy13806 9 LHASKRINTRPTVSDFFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEG-KPNGLLCVL 86 (97)
Q Consensus 9 ~~~~~~~gfe~~~~NsfeqlciN~~nE~Lq~~~~~~~f~~e~~ey~~Egi~~~~i~~-~dn~~~ldli~~-~p~GllslL 86 (97)
+++.|++|||.|+.|||||||||||||+||++|++++|..||++|.+|||.|..++| .||++|+|||++ +|.|||++|
T Consensus 450 IgvLDI~GFE~f~~NsfEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idlie~~~~~Gil~lL 529 (1010)
T 1g8x_A 450 IGVLDISGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKVEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGILALL 529 (1010)
T ss_dssp EEEEECCCCCCCSSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCCCCCSHHHHHHHHCTTTTCHHHHH
T ss_pred eeeccCcccccCCcCcHHHHHHHhhhHHHHHHHHHHhhHHHHHHhhccCCCccccccccChHHHHHHHhcCCCCeeehhh
Confidence 467899999999999999999999999999999999999999999999999999999 599999999998 499999999
Q ss_pred hHHhhhcCC
Q psy13806 87 DDQAKQNGF 95 (97)
Q Consensus 87 Deec~~Pk~ 95 (97)
||||++|++
T Consensus 530 dee~~~p~~ 538 (1010)
T 1g8x_A 530 DEQSVFPNA 538 (1010)
T ss_dssp HHHTTSSSC
T ss_pred hHHhCCCCC
Confidence 999999985
No 11
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=99.96 E-value=7.9e-31 Score=218.98 Aligned_cols=87 Identities=41% Similarity=0.680 Sum_probs=82.1
Q ss_pred HHhhhhhccccccCCchhhhHHhhhhhHHHHHHHHhhhhhHHHHhhhcCCccccccc-CCcHhHHHHHhcC--CCccccc
Q psy13806 9 LHASKRINTRPTVSDFFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGK--PNGLLCV 85 (97)
Q Consensus 9 ~~~~~~~gfe~~~~NsfeqlciN~~nE~Lq~~~~~~~f~~e~~ey~~Egi~~~~i~~-~dn~~~ldli~~~--p~Gllsl 85 (97)
+++.|++|||.|+.|||||||||||||+||++|++++|..++++|..|||.|.+++| .||++|+|||+++ |+|||++
T Consensus 460 IgvLDi~GFE~f~~NsfeQlciNy~nEkLq~~f~~~~f~~eq~ey~~Egi~~~~i~~~~dn~~~~~lie~~~~~~Gil~l 539 (1184)
T 1i84_S 460 LGILDIAGFEIFEINSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLDLQPCIELIERPTNPPGVLAL 539 (1184)
T ss_dssp EEEEECCCCCCCSSBCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCSCCCCCCCCCCHHHHHTTSCCSSSCCHHHH
T ss_pred EEEeecCCcCCCCcchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCccccccCCCcHHHHHHHhCCCCCCCchhh
Confidence 567899999999999999999999999999999999999999999999999999999 6999999999962 3499999
Q ss_pred chHHhhhcCC
Q psy13806 86 LDDQAKQNGF 95 (97)
Q Consensus 86 LDeec~~Pk~ 95 (97)
|||||++|++
T Consensus 540 Ldee~~~p~~ 549 (1184)
T 1i84_S 540 LDEECWFPKA 549 (1184)
T ss_dssp HHHTTSCTTC
T ss_pred hhhhhCCCCC
Confidence 9999999985
No 12
>1y4m_A HERV-FRD_6P24.1 provirus ancestral ENV polyprotei; coat protein, membrane fusion, endogenous retrovirus, membra protein; 1.60A {Homo sapiens} SCOP: h.3.2.1
Probab=38.92 E-value=6.1 Score=21.66 Aligned_cols=26 Identities=19% Similarity=0.316 Sum_probs=22.5
Q ss_pred CcHhHHHHHhcCCCcccccchHHhhh
Q psy13806 67 DNTLCLQLVEGKPNGLLCVLDDQAKQ 92 (97)
Q Consensus 67 dn~~~ldli~~~p~GllslLDeec~~ 92 (97)
.|.-.+|++..+..|+=..|.|+|.|
T Consensus 25 QNRraLDlL~a~~GG~C~~l~e~CC~ 50 (53)
T 1y4m_A 25 QNRRGLDMLTAAQGGICLALDEKCCF 50 (53)
T ss_dssp HHHHHHHHHTGGGTSHHHHTTSCCCC
T ss_pred HHHHHHHHHHHHhCCccHHhcCchhc
Confidence 47788999998889999999999876
No 13
>1mof_A Moloney murine leukemia virus P15; glycoprotein, coat protein, polyprotein, transmembrane, SIGN protein; 1.70A {Moloney murine leukemia virus} SCOP: h.3.2.1
Probab=34.19 E-value=7.4 Score=21.47 Aligned_cols=26 Identities=27% Similarity=0.282 Sum_probs=22.4
Q ss_pred CcHhHHHHHhcCCCcccccchHHhhh
Q psy13806 67 DNTLCLQLVEGKPNGLLCVLDDQAKQ 92 (97)
Q Consensus 67 dn~~~ldli~~~p~GllslLDeec~~ 92 (97)
.|.-.+|++..+..|+=..|.|+|.|
T Consensus 27 QNRraLD~L~a~~GG~C~~l~e~CCf 52 (55)
T 1mof_A 27 QNRRGLDLLFLKEGGLCAALKEECAF 52 (55)
T ss_dssp HHHHHHHHHTGGGTCHHHHHTSCCCC
T ss_pred HHHHHHHHHHHHhCCccHHHcCchhc
Confidence 47788999988889999999999876
Done!