BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13807
(204 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QW0|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, I303a Mutation,
Bound To 3,4 Dichlorobenzoate
Length = 504
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 78/156 (50%), Gaps = 11/156 (7%)
Query: 52 GAPCSPTLFNKIRDTFGIKHLIVKVVDKKGNIVPMGMCGEVCYRGYN-VMLGYYGEENKI 110
G +P F+++R IV++ IV G GE+ + +GY +
Sbjct: 321 GTEMAPGFFSEVR--------IVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQAT 372
Query: 111 LE--NDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQV 168
E D W+ + D + G +++GR+ D+II GGENI P EIE VL T P V E V
Sbjct: 373 AEKLQDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVV 432
Query: 169 YGVPDERLGEVVVANIELKPGASLTQDDIKTYCKGK 204
G+ D+R G+ V A + + G +L+ D + T+C+
Sbjct: 433 IGLADQRWGQSVTACVVPRLGETLSADALDTFCRSS 468
>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO
4-Chlorobenzoate
pdb|3CW9|A Chain A, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
pdb|3CW9|B Chain B, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
Length = 504
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 78/156 (50%), Gaps = 11/156 (7%)
Query: 52 GAPCSPTLFNKIRDTFGIKHLIVKVVDKKGNIVPMGMCGEVCYRGYN-VMLGYYGEENKI 110
G +P F+++R IV++ IV G GE+ + +GY +
Sbjct: 321 GTEMAPGFFSEVR--------IVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQAT 372
Query: 111 LE--NDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQV 168
E D W+ + D + G +++GR+ D+II GGENI P EIE VL T P V E V
Sbjct: 373 AEKLQDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVV 432
Query: 169 YGVPDERLGEVVVANIELKPGASLTQDDIKTYCKGK 204
G+ D+R G+ V A + + G +L+ D + T+C+
Sbjct: 433 IGLADQRWGQSVTACVVPRLGETLSADALDTFCRSS 468
>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QVY|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3,4- Dichlorobenzoate
Length = 504
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 78/154 (50%), Gaps = 11/154 (7%)
Query: 52 GAPCSPTLFNKIRDTFGIKHLIVKVVDKKGNIVPMGMCGEVCYRGYN-VMLGYYGEENKI 110
G +P F+++R IV++ IV G GE+ + +GY +
Sbjct: 321 GTEMAPGFFSEVR--------IVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQAT 372
Query: 111 LE--NDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQV 168
E D W+ + D + G +++GR+ D+II GGENI P EIE VL T P V E V
Sbjct: 373 AEKLQDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVV 432
Query: 169 YGVPDERLGEVVVANIELKPGASLTQDDIKTYCK 202
G+ D+R G+ V A + + G +L+ D + T+C+
Sbjct: 433 IGLADQRWGQSVTACVVPRLGETLSADALDTFCR 466
>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND
To 4cb
Length = 504
Score = 82.4 bits (202), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 78/156 (50%), Gaps = 11/156 (7%)
Query: 52 GAPCSPTLFNKIRDTFGIKHLIVKVVDKKGNIVPMGMCGEVCYRGYN-VMLGYYGEENKI 110
G +P F+++R IV++ IV G GE+ + +GY +
Sbjct: 321 GTEMAPGFFSEVR--------IVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQAT 372
Query: 111 LE--NDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQV 168
E D W+ + D + G +++GR+ D+II GGENI P EIE VL T P V E V
Sbjct: 373 AEKLQDGWYRTSDVAVWTPEGTVRILGRVPDMIISGGENIHPSEIERVLGTAPGVTEVVV 432
Query: 169 YGVPDERLGEVVVANIELKPGASLTQDDIKTYCKGK 204
G+ D+R G+ V A + + G +L+ D + T+C+
Sbjct: 433 IGLADQRWGQSVTACVVPRLGETLSADALDTFCRSS 468
>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To
4cba-adenylate
Length = 504
Score = 82.4 bits (202), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 78/156 (50%), Gaps = 11/156 (7%)
Query: 52 GAPCSPTLFNKIRDTFGIKHLIVKVVDKKGNIVPMGMCGEVCYRGYN-VMLGYYGEENKI 110
G +P F+++R IV++ IV G GE+ + +GY +
Sbjct: 321 GTEMAPGFFSEVR--------IVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPEAT 372
Query: 111 LE--NDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQV 168
E D W+ + D + G +++GR+ D+II GGENI P EIE VL T P V E V
Sbjct: 373 AEKLQDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVV 432
Query: 169 YGVPDERLGEVVVANIELKPGASLTQDDIKTYCKGK 204
G+ D+R G+ V A + + G +L+ D + T+C+
Sbjct: 433 IGLADQRWGQSVTACVVPRLGETLSADALDTFCRSS 468
>pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED,
SELENOMETHIONINE
Length = 504
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 77/154 (50%), Gaps = 11/154 (7%)
Query: 52 GAPCSPTLFNKIRDTFGIKHLIVKVVDKKGNIVPMGMCGEVCYRGYN-VMLGYYGEENKI 110
G +P F+++R IV++ IV G GE+ + +GY +
Sbjct: 321 GTEXAPGFFSEVR--------IVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQAT 372
Query: 111 LE--NDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQV 168
E D W+ + D + G +++GR+ D II GGENI P EIE VL T P V E V
Sbjct: 373 AEKLQDGWYRTSDVAVWTPEGTVRILGRVDDXIISGGENIHPSEIERVLGTAPGVTEVVV 432
Query: 169 YGVPDERLGEVVVANIELKPGASLTQDDIKTYCK 202
G+ D+R G+ V A + + G +L+ D + T+C+
Sbjct: 433 IGLADQRWGQSVTACVVPRLGETLSADALDTFCR 466
>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform
pdb|1LCI|A Chain A, Firefly Luciferase
pdb|3RIX|A Chain A, 1.7a Resolution Structure Of A Firefly
Luciferase-Aspulvinone J Inhibitor Complex
pdb|4E5D|A Chain A, 2.2a Resolution Structure Of A Firefly
Luciferase-Benzothiazole Inhibitor Complex
Length = 550
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 72/135 (53%), Gaps = 4/135 (2%)
Query: 74 VKVVD-KKGNIVPMGMCGEVCYRGYNVMLGYYGE---ENKILENDEWFPSGDFFILHENG 129
KVVD G + + GE+C RG +M GY N +++ D W SGD E+
Sbjct: 371 AKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDE 430
Query: 130 YGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPG 189
+ +V R+K +I G + P E+E +L HP++ +A V G+PD+ GE+ A + L+ G
Sbjct: 431 HFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHG 490
Query: 190 ASLTQDDIKTYCKGK 204
++T+ +I Y +
Sbjct: 491 KTMTEKEIVDYVASQ 505
>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form)
pdb|3IER|A Chain A, Firefly Luciferase Apo Structure (P41 Form) With Peg 400
Bound
pdb|3IES|A Chain A, Firefly Luciferase Inhibitor Complex
Length = 551
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 72/135 (53%), Gaps = 4/135 (2%)
Query: 74 VKVVD-KKGNIVPMGMCGEVCYRGYNVMLGYYGE---ENKILENDEWFPSGDFFILHENG 129
KVVD G + + GE+C RG +M GY N +++ D W SGD E+
Sbjct: 371 AKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDE 430
Query: 130 YGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPG 189
+ +V R+K +I G + P E+E +L HP++ +A V G+PD+ GE+ A + L+ G
Sbjct: 431 HFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHG 490
Query: 190 ASLTQDDIKTYCKGK 204
++T+ +I Y +
Sbjct: 491 KTMTEKEIVDYVASQ 505
>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
pdb|4G36|B Chain B, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
Length = 555
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 72/135 (53%), Gaps = 4/135 (2%)
Query: 74 VKVVD-KKGNIVPMGMCGEVCYRGYNVMLGYYGE---ENKILENDEWFPSGDFFILHENG 129
KVVD G + + GE+C RG +M GY N +++ D W SGD E+
Sbjct: 376 AKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDE 435
Query: 130 YGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPG 189
+ +V R+K +I G + P E+E +L HP++ +A V G+PD+ GE+ A + L+ G
Sbjct: 436 HFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHG 495
Query: 190 ASLTQDDIKTYCKGK 204
++T+ +I Y +
Sbjct: 496 KTMTEKEIVDYVASQ 510
>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|B Chain B, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|C Chain C, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|D Chain D, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 64/216 (29%), Positives = 98/216 (45%), Gaps = 33/216 (15%)
Query: 10 KCTVLYGTPTMYVDLISSIQPLTEEMPNIAEEL---SSPVIALTAGAPCSPTLFNKIRDT 66
+ TVL G PT Y L+ S + LT+E S+P++A T S + + +
Sbjct: 242 RATVLXGVPTFYTRLLQSPR-LTKETTGHXRLFISGSAPLLADTH-REWSAKTGHAVLER 299
Query: 67 FG------------------------IKHLIVKVVD-KKGNIVPMGMCGEVCYRGYNVML 101
+G + + +V D + G +P G G + +G NV
Sbjct: 300 YGXTETNXNTSNPYDGDRVPGAVGPALPGVSARVTDPETGKELPRGDIGXIEVKGPNVFK 359
Query: 102 GYYGEENKI---LENDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQ 158
GY+ K +D +F +GD + E GY ++GR KD++I GG N+ PKEIE +
Sbjct: 360 GYWRXPEKTKSEFRDDGFFITGDLGKIDERGYVHILGRGKDLVITGGFNVYPKEIESEID 419
Query: 159 THPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQ 194
P VVE+ V GVP GE V A + GA++ +
Sbjct: 420 AXPGVVESAVIGVPHADFGEGVTAVVVRDKGATIDE 455
>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
pdb|3IVR|B Chain B, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
Length = 509
Score = 77.4 bits (189), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 64/131 (48%), Gaps = 4/131 (3%)
Query: 74 VKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILE--NDEWFPSGDFFILHENGYG 131
V VVD + +P G GE+ RG V GY+ + W +GD +GY
Sbjct: 332 VAVVDAEDRPLPPGEVGEIVLRGPTVFKGYWNNAAATQHAFRNGWHHTGDMGRFDADGYL 391
Query: 132 QVVGRI--KDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPG 189
GR K++I GGEN+ P E+E L+ HP + +A V GVPD + E + A KPG
Sbjct: 392 FYAGRAPEKELIKTGGENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVCVCKPG 451
Query: 190 ASLTQDDIKTY 200
S+ D + +
Sbjct: 452 ESIAADALAEF 462
>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris
Turkestanicus Luciferase
Length = 582
Score = 77.0 bits (188), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 82/168 (48%), Gaps = 9/168 (5%)
Query: 41 ELSSPVIALTAGAPCSPTLFNKIRDTFGIKHLIVKVVD-KKGNIVPMGMCGEVCYRGYNV 99
E +S +I G P K+ F K+VD G + + GE+C +G +
Sbjct: 378 ETTSAIIITPRGRDDKPGACGKVVPFFS-----AKIVDLDTGKTLGVNQRGELCVKGPMI 432
Query: 100 MLGYYGE---ENKILENDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYV 156
M GY + +++ D W SGD ++GY +V R+K +I G + P E+E +
Sbjct: 433 MKGYVNNPEATSALIDKDGWLHSGDIAYYDKDGYFFIVDRLKSLIKYKGYQVPPAELESI 492
Query: 157 LQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCKGK 204
L HP + +A V G+PD GE+ A + L+ G ++T+ ++ Y G+
Sbjct: 493 LLQHPFIFDAGVAGIPDPDAGELPAAVVVLEEGKTMTEQEVMDYVAGQ 540
>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O82|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O83|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O83|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O84|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3O84|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3U16|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U16|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U17|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
pdb|3U17|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
Length = 544
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/122 (37%), Positives = 68/122 (55%), Gaps = 8/122 (6%)
Query: 74 VKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYG---EENKILENDEWFPSGDFFILHENGY 130
+K+VD++ VP G G + RG GYY +++ + D ++ SGD +G
Sbjct: 372 IKIVDEQYREVPEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTPDGN 431
Query: 131 GQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGE-----VVVANIE 185
+VVGRIKD I RGGE I +EIE ++ HP+V+ A + + DE+ GE +V N E
Sbjct: 432 LRVVGRIKDQINRGGEKIASEEIEKLILLHPEVMHAALVAIVDEQFGEKSCAFIVSRNPE 491
Query: 186 LK 187
LK
Sbjct: 492 LK 493
>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
pdb|4G37|B Chain B, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
Length = 555
Score = 73.9 bits (180), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 71/135 (52%), Gaps = 4/135 (2%)
Query: 74 VKVVD-KKGNIVPMGMCGEVCYRGYNVMLGYYGE---ENKILENDEWFPSGDFFILHENG 129
KVVD G + + GE+ RG +M GY N +++ D W SGD E+
Sbjct: 376 AKVVDLDTGKTLGVNQRGELSVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDE 435
Query: 130 YGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPG 189
+ +V R+K +I G + P E+E +L HP++ +A V G+PD+ GE+ A + L+ G
Sbjct: 436 HFFIVDRLKSLIKYKGCQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHG 495
Query: 190 ASLTQDDIKTYCKGK 204
++T+ +I Y +
Sbjct: 496 KTMTEKEIVDYVASQ 510
>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|B Chain B, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|C Chain C, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|D Chain D, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|E Chain E, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|F Chain F, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|G Chain G, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|H Chain H, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|I Chain I, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|J Chain J, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
Length = 617
Score = 69.7 bits (169), Expect = 1e-12, Method: Composition-based stats.
Identities = 43/117 (36%), Positives = 59/117 (50%), Gaps = 3/117 (2%)
Query: 74 VKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEEN---KILENDEWFPSGDFFILHENGY 130
V V D +GN +P G G + RG GYY + + ++ SGD + GY
Sbjct: 367 VWVADAEGNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPEGY 426
Query: 131 GQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELK 187
V GR KD I RGGE I +EIE +L HP V+ A + + DE +GE A + +K
Sbjct: 427 ITVQGREKDQINRGGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKSCAYLVVK 483
>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/225 (26%), Positives = 97/225 (43%), Gaps = 31/225 (13%)
Query: 10 KCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELS--SPVIALTAGAPCSPTLFNKIRDTF 67
+ TVL G PT Y L+ S + E ++ +S +P++A T S + + + +
Sbjct: 242 RATVLMGVPTFYTRLLQSPRLTXETTGHMRLFISGSAPLLADTH-REWSAXTGHAVLERY 300
Query: 68 GIKH------------------------LIVKVVD-KKGNIVPMGMCGEVCYRGYNVMLG 102
G+ + +V D + G +P G G + G NV G
Sbjct: 301 GMTETNMNTSNPYDGDRVPGAVGPALPGVSARVTDPETGXELPRGDIGMIEVXGPNVFXG 360
Query: 103 YYGEENKI---LENDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQT 159
Y+ +D +F +GD + E GY ++GR D++I GG N+ P EIE +
Sbjct: 361 YWRMPEXTXSEFRDDGFFITGDLGXIDERGYVHILGRGXDLVITGGFNVYPXEIESEIDA 420
Query: 160 HPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCKGK 204
P VVE+ V GVP GE V A + GA++ + + G+
Sbjct: 421 MPGVVESAVIGVPHADFGEGVTAVVVRDXGATIDEAQVLHGLDGQ 465
>pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|B Chain B, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|C Chain C, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
Length = 569
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/121 (38%), Positives = 60/121 (49%), Gaps = 9/121 (7%)
Query: 74 VKVVDKKGNIVPMGMCGEVCYR-----GYNVMLGYYGEENKILEN---DEWFPSGDFFIL 125
V+++D KGN++P G G++ R + GY +K N D W GD I
Sbjct: 385 VQIIDDKGNVLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWL-LGDRGIK 443
Query: 126 HENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIE 185
E+GY Q +GR DII G I P E+E L HP VVE V PD GEVV A +
Sbjct: 444 DEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVV 503
Query: 186 L 186
L
Sbjct: 504 L 504
>pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a, With L64p Mutation
pdb|3C5E|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Atp
pdb|3DAY|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp-Cpp
pdb|2VZE|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|C Chain C, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|3EQ6|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3EQ6|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3GPC|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
pdb|3GPC|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
Length = 570
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/121 (38%), Positives = 60/121 (49%), Gaps = 9/121 (7%)
Query: 74 VKVVDKKGNIVPMGMCGEVCYR-----GYNVMLGYYGEENKILEN---DEWFPSGDFFIL 125
V+++D KGN++P G G++ R + GY +K N D W GD I
Sbjct: 385 VQIIDDKGNVLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWL-LGDRGIK 443
Query: 126 HENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIE 185
E+GY Q +GR DII G I P E+E L HP VVE V PD GEVV A +
Sbjct: 444 DEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVV 503
Query: 186 L 186
L
Sbjct: 504 L 504
>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3A9V|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3NI2|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate:coa Ligase
Length = 536
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 76/136 (55%), Gaps = 4/136 (2%)
Query: 69 IKHLIVKVVD-KKGNIVPMGMCGEVCYRGYNVMLGYYGE---ENKILENDEWFPSGDFFI 124
+++ +K+VD + G +P GE+C RG +M GY + ++ ++ + W +GD
Sbjct: 361 VRNAEMKIVDPETGASLPRNQPGEICIRGDQIMKGYLNDPEATSRTIDKEGWLHTGDIGY 420
Query: 125 LHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANI 184
+ ++ +V R+K++I G + P E+E +L HP++ +A V G+ DE GEV VA +
Sbjct: 421 IDDDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPEISDAAVVGLKDEDAGEVPVAFV 480
Query: 185 ELKPGASLTQDDIKTY 200
+ T+D+IK Y
Sbjct: 481 VKSEKSQATEDEIKQY 496
>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase
Length = 517
Score = 67.4 bits (163), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 62/114 (54%), Gaps = 3/114 (2%)
Query: 90 GEVCYRGYNVMLGYYG--EENKILENDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGEN 147
GEV + ++ Y+ E + ++ WF +GD + + GY + R+KD+II GGEN
Sbjct: 363 GEVVIKSDILLKEYWNRPEATRDAFDNGWFRTGDIGEIDDEGYLYIKDRLKDMIISGGEN 422
Query: 148 IIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYC 201
+ P EIE V+ P V E V G+PDE+ GE+ A I + +++ I YC
Sbjct: 423 VYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAAA-IVVADQNEVSEQQIVEYC 475
>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3
Length = 503
Score = 67.4 bits (163), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 90/207 (43%), Gaps = 31/207 (14%)
Query: 10 KCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELS--SPVIALTAGAPCSPTLFNKIRDTF 67
+ TVL G PT Y L+ S + E ++ +S +P++A T S + + + +
Sbjct: 242 RATVLMGVPTFYTRLLQSPRLTXETTGHMRLFISGSAPLLADTH-REWSAXTGHAVLERY 300
Query: 68 GIKH------------------------LIVKVVD-KKGNIVPMGMCGEVCYRGYNVMLG 102
G+ + +V D + G +P G G + G NV G
Sbjct: 301 GMTETNMNTSNPYDGDRVPGAVGPALPGVSARVTDPETGXELPRGDIGMIEVXGPNVFXG 360
Query: 103 YYGEENKI---LENDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQT 159
Y+ +D +F +GD + E GY ++GR D++I GG N+ P EIE +
Sbjct: 361 YWRMPEXTXSEFRDDGFFITGDLGXIDERGYVHILGRGXDLVITGGFNVYPXEIESEIDA 420
Query: 160 HPDVVEAQVYGVPDERLGEVVVANIEL 186
P VVE+ V GVP GE V A + L
Sbjct: 421 MPGVVESAVIGVPHADFGEGVTAFVVL 447
>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Mgatp
pdb|2D1R|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Oxyluciferin And Amp
Length = 548
Score = 67.0 bits (162), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 66/232 (28%), Positives = 103/232 (44%), Gaps = 44/232 (18%)
Query: 10 KCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTL-------FN- 61
KCT + PT++ L S E+ N +LS+ V + GAP S + FN
Sbjct: 283 KCTSVILVPTLFAILNKS------ELLN-KYDLSNLVEIASGGAPLSKEVGEAVARRFNL 335
Query: 62 -KIRDTFGIKHLIVKVV------DK---KGNIVPMGMC----------------GEVCYR 95
+R +G+ ++ DK G +VP+ GEVC +
Sbjct: 336 PGVRQGYGLTETTSAIIITPEGDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVK 395
Query: 96 GYNVMLGYYG--EENKILENDE-WFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKE 152
G +M GY E K L ++E W +GD E + +V R+K +I G + P E
Sbjct: 396 GPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAE 455
Query: 153 IEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCKGK 204
+E VL HP + +A V GVPD GE+ A + L+ G ++T+ ++ Y +
Sbjct: 456 LESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGKNMTEKEVMDYVASQ 507
>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With High-Energy Intermediate
Analogue
Length = 548
Score = 67.0 bits (162), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 66/232 (28%), Positives = 103/232 (44%), Gaps = 44/232 (18%)
Query: 10 KCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTL-------FN- 61
KCT + PT++ L S E+ N +LS+ V + GAP S + FN
Sbjct: 283 KCTSVILVPTLFAILNKS------ELLN-KYDLSNLVEIASGGAPLSKEVGEAVARRFNL 335
Query: 62 -KIRDTFGIKHLIVKVV------DK---KGNIVPMGMC----------------GEVCYR 95
+R +G+ ++ DK G +VP+ GEVC +
Sbjct: 336 PGVRQGYGLTETTSAIIITPEGDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVK 395
Query: 96 GYNVMLGYYG--EENKILENDE-WFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKE 152
G +M GY E K L ++E W +GD E + +V R+K +I G + P E
Sbjct: 396 GPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAE 455
Query: 153 IEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCKGK 204
+E VL HP + +A V GVPD GE+ A + L+ G ++T+ ++ Y +
Sbjct: 456 LESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGKNMTEKEVMDYVASQ 507
>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|B Chain B, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|C Chain C, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
Length = 506
Score = 67.0 bits (162), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 90/207 (43%), Gaps = 31/207 (14%)
Query: 10 KCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELS--SPVIALTAGAPCSPTLFNKIRDTF 67
+ TVL G PT Y L+ S + E ++ +S +P++A T S + + + +
Sbjct: 242 RATVLMGVPTFYTRLLQSPRLTXETTGHMRLFISGSAPLLADTH-REWSAXTGHAVLERY 300
Query: 68 GIKH------------------------LIVKVVD-KKGNIVPMGMCGEVCYRGYNVMLG 102
G+ + +V D + G +P G G + G NV G
Sbjct: 301 GMTETNMNTSNPYDGDRVPGAVGPALPGVSARVTDPETGXELPRGDIGMIEVXGPNVFXG 360
Query: 103 YYGEENKI---LENDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQT 159
Y+ +D +F +GD + E GY ++GR D++I GG N+ P EIE +
Sbjct: 361 YWRMPEXTXSEFRDDGFFITGDLGXIDERGYVHILGRGXDLVITGGFNVYPXEIESEIDA 420
Query: 160 HPDVVEAQVYGVPDERLGEVVVANIEL 186
P VVE+ V GVP GE V A + L
Sbjct: 421 MPGVVESAVIGVPHADFGEGVTAFVVL 447
>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Red-Color Emission S286n Mutant Complexed
With High-Energy Intermediate Analogue
Length = 548
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 66/232 (28%), Positives = 103/232 (44%), Gaps = 44/232 (18%)
Query: 10 KCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTL-------FN- 61
KCT + PT++ L S E+ N +LS+ V + GAP S + FN
Sbjct: 283 KCTNVILVPTLFAILNKS------ELLN-KYDLSNLVEIASGGAPLSKEVGEAVARRFNL 335
Query: 62 -KIRDTFGIKHLIVKVV------DK---KGNIVPMGMC----------------GEVCYR 95
+R +G+ ++ DK G +VP+ GEVC +
Sbjct: 336 PGVRQGYGLTETTSAIIITPEGDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVK 395
Query: 96 GYNVMLGYYG--EENKILENDE-WFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKE 152
G +M GY E K L ++E W +GD E + +V R+K +I G + P E
Sbjct: 396 GPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAE 455
Query: 153 IEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCKGK 204
+E VL HP + +A V GVPD GE+ A + L+ G ++T+ ++ Y +
Sbjct: 456 LESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGKNMTEKEVMDYVASQ 507
>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein
Length = 979
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 83/162 (51%), Gaps = 4/162 (2%)
Query: 43 SSPVIALTAGAPCSPTLFNKIRDTFGIKHLIVKVVD-KKGNIVPMGMCGEVCYRGYNVML 101
+ PV+A++ G P +++ +K+VD G+ + GE+C RG+ +M
Sbjct: 382 AGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQPGEICIRGHQIMK 441
Query: 102 GYY---GEENKILENDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQ 158
GY + ++ D W +GD ++ ++ +V R+K++I G + P E+E +L
Sbjct: 442 GYLNNPAATAETIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLI 501
Query: 159 THPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTY 200
HPD+ + V + +E GEV VA + + L++DD+K +
Sbjct: 502 GHPDITDVAVVAMKEEAAGEVPVAFVVKSKDSELSEDDVKQF 543
>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
pdb|3ETC|B Chain B, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
Length = 580
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 65/236 (27%), Positives = 101/236 (42%), Gaps = 60/236 (25%)
Query: 12 TVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGIKH 71
T PT+Y LI E++ + S+ A+ AG P +P +FN+ + GIK
Sbjct: 318 TTFCAPPTIYRFLIK------EDLSHY--NFSTLKYAVVAGEPLNPEVFNRFLEFTGIKL 369
Query: 72 L--------------------------------IVKVVDKKGNIVPMGMCGEVCYRGYNV 99
+ ++++D+ G + +G GE+ N
Sbjct: 370 MEGFGQTETVVTIATFPWMEPKPGSIGKPTPGYKIELMDRDGRLCEVGEEGEIVI---NT 426
Query: 100 MLG-------YYGEENKILE---NDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENII 149
M G +YG++ + E +D ++ +GD + E+GY VGR DII G +
Sbjct: 427 MEGKPVGLFVHYGKDPERTEETWHDGYYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVG 486
Query: 150 PKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIEL----KPGASLT---QDDIK 198
P E+E L HP V+E + GVPD G+V+ A I L P SL QD +K
Sbjct: 487 PFEVESALIQHPAVLECAITGVPDPVRGQVIKATIVLTKDYTPSDSLKNELQDHVK 542
>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1ULT|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
Length = 541
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 59/114 (51%), Gaps = 5/114 (4%)
Query: 74 VKVVDKKGNIVPMG--MCGEVCYRGYNVMLGYYGEE---NKILENDEWFPSGDFFILHEN 128
++V D++G VP GEV +G + GYYG E L D +F +GD + E
Sbjct: 366 LRVADEEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEE 425
Query: 129 GYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVA 182
GY ++ R+KD+I GGE I ++E L HP V EA V +P + E +A
Sbjct: 426 GYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLA 479
>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate
pdb|1MDF|A Chain A, Crystal Structure Of Dhbe In Absence Of Substrate
Length = 539
Score = 63.5 bits (153), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 64/136 (47%), Gaps = 16/136 (11%)
Query: 46 VIALTAGAPCSPTLFNKIRDTFGIKHLIVKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYG 105
+I T G P SP +++ D D ++ P G G + RG + GYY
Sbjct: 348 IIVNTQGKPMSPYDESRVWD------------DHDRDVKP-GETGHLLTRGPYTIRGYYK 394
Query: 106 EEN---KILENDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPD 162
E D ++ +GD L +GY V GR KD I RGGE + +E+E L HP
Sbjct: 395 AEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPA 454
Query: 163 VVEAQVYGVPDERLGE 178
V +A + +PD+ LGE
Sbjct: 455 VHDAAMVSMPDQFLGE 470
>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
pdb|3G7S|B Chain B, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
Length = 549
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 65/133 (48%), Gaps = 9/133 (6%)
Query: 81 GNIVPMGMCGEVCYRGYNVMLGYYGEENKILE-------NDEWFPSGDFFILHENGYGQV 133
G + +G GE+ RG N+ GY+ E + E ++F +GD + E G+
Sbjct: 375 GRELGVGESGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFFRTGDVGFIDEEGFLHF 434
Query: 134 VGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKP--GAS 191
R+K++I G I P E+E +L H V + V G PDE GEV A I LKP
Sbjct: 435 QDRVKEVIKYKGYTIAPFELEALLXKHEAVXDVAVIGKPDEEAGEVPKAFIVLKPEYRGK 494
Query: 192 LTQDDIKTYCKGK 204
+ ++DI + + +
Sbjct: 495 VDEEDIIEWVRER 507
>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp
Length = 539
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 62/136 (45%), Gaps = 16/136 (11%)
Query: 46 VIALTAGAPCSPTLFNKIRDTFGIKHLIVKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYG 105
+I T G P SP +++ D D ++ P G G + RG + GYY
Sbjct: 348 IIVNTQGKPXSPYDESRVWD------------DHDRDVKP-GETGHLLTRGPYTIRGYYK 394
Query: 106 EEN---KILENDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPD 162
E D ++ +GD L +GY V GR KD I RGGE + +E+E L HP
Sbjct: 395 AEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPA 454
Query: 163 VVEAQVYGVPDERLGE 178
V +A PD+ LGE
Sbjct: 455 VHDAAXVSXPDQFLGE 470
>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Methylmalonyl-Coa And Amp Bound
pdb|3NYR|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Malonyl-Coa And Amp Bound
Length = 505
Score = 61.2 bits (147), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 51/100 (51%), Gaps = 4/100 (4%)
Query: 89 CGEVCYRGYNVMLGYYGEENKI---LENDEWFPSGDFFILHENGYGQVVGR-IKDIIIRG 144
GE+ RG N+ Y + D +F +GD + +GY ++VGR D+I G
Sbjct: 353 VGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDPDGYVRIVGRKATDLIKSG 412
Query: 145 GENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANI 184
G I EIE L HP+V EA V G PD LGE +VA I
Sbjct: 413 GYKIGAGEIENALLEHPEVREAAVTGEPDPDLGERIVAWI 452
>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|B Chain B, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|C Chain C, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
Length = 501
Score = 60.1 bits (144), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 62/127 (48%), Gaps = 6/127 (4%)
Query: 55 CSPTLFNKIRDTFGIKHLIVKVVDKKGNIVPMGMCGEVCYRGYNVMLGYY--GEENKILE 112
+P + + DT G+ V V K N GE+ +G NVM GY + E
Sbjct: 317 ATPEMLHARPDTVGMPSANVDVKIKNPN---KEGHGELMIKGANVMNGYLYPTDLTGTFE 373
Query: 113 NDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVP 172
N +F +GD + GY + R KD+II GGENI P +IE V + P + +A G P
Sbjct: 374 NG-YFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHP 432
Query: 173 DERLGEV 179
D+ G+V
Sbjct: 433 DDTWGQV 439
>pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
pdb|3PBK|B Chain B, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
Length = 583
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 54/95 (56%), Gaps = 9/95 (9%)
Query: 74 VKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILENDE-----WFPSGDFFILHEN 128
+++ ++ G V + G +C G ++ GY+G++ + DE W +GD L +
Sbjct: 395 IEIRNEAGXPVAERVVGHICISGPSLXSGYFGDQ---VSQDEIAATGWLDTGDLGYLL-D 450
Query: 129 GYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDV 163
GY V GRIKD+II G NI P++IEY+ + P++
Sbjct: 451 GYLYVTGRIKDLIIIRGRNIWPQDIEYIAEQEPEI 485
>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
pdb|2V7B|B Chain B, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
Length = 529
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/241 (23%), Positives = 100/241 (41%), Gaps = 47/241 (19%)
Query: 2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPV-IALTAGAPCSPTLF 60
I +V+ + TV YG PT+Y +++ S PN+ + I +AG +
Sbjct: 266 IFARLVEHRPTVFYGVPTLYANMLVS--------PNLPARADVAIRICTSAGEALPREIG 317
Query: 61 NKIRDTFGIK-----------HLI---------------------VKVVDKKGNIVPMGM 88
+ FG + H+ +++ D+ G+ VP G
Sbjct: 318 ERFTAHFGCEILDGIGSTEMLHIFLSNRAGAVEYGTTGRPVPGYEIELRDEAGHAVPDGE 377
Query: 89 CGEVCYRGYNVMLGYYG--EENKILENDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGE 146
G++ +G + + Y+ E+++ EW SGD + NG GR D++ G+
Sbjct: 378 VGDLYIKGPSAAVMYWNNREKSRATFLGEWIRSGDKYCRLPNGCYVYAGRSDDMLKVSGQ 437
Query: 147 NIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEV---VVANIELKPGASLTQDDIKTYCKG 203
+ P E+E VL H V+EA V GV L + VV E P + + +++K + K
Sbjct: 438 YVSPVEVEMVLVQHDAVLEAAVVGVDHGGLVKTRAFVVLKREFAP-SEILAEELKAFVKD 496
Query: 204 K 204
+
Sbjct: 497 R 497
>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation
pdb|2P2M|B Chain B, Acetyl-Coa Synthetase, R194a Mutation
Length = 652
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 36/71 (50%)
Query: 119 SGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGE 178
SGD E+GY + GR+ D++ G + EIE L HP + EA V G+P G+
Sbjct: 498 SGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQ 557
Query: 179 VVVANIELKPG 189
+ A + L G
Sbjct: 558 AIYAYVTLNHG 568
>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation
pdb|2P20|B Chain B, Acetyl-Coa Synthetase, R584a Mutation
Length = 652
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 36/71 (50%)
Query: 119 SGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGE 178
SGD E+GY + GR+ D++ G + EIE L HP + EA V G+P G+
Sbjct: 498 SGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQ 557
Query: 179 VVVANIELKPG 189
+ A + L G
Sbjct: 558 AIYAYVTLNHG 568
>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG3|B Chain B, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG4|A Chain A, Acetyl Coa Synthetase, Salmonella Enterica
pdb|1PG4|B Chain B, Acetyl Coa Synthetase, Salmonella Enterica
Length = 652
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 36/71 (50%)
Query: 119 SGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGE 178
SGD E+GY + GR+ D++ G + EIE L HP + EA V G+P G+
Sbjct: 498 SGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQ 557
Query: 179 VVVANIELKPG 189
+ A + L G
Sbjct: 558 AIYAYVTLNHG 568
>pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation
pdb|2P2B|B Chain B, Acetyl-coa Synthetase, V386a Mutation
Length = 652
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 36/71 (50%)
Query: 119 SGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGE 178
SGD E+GY + GR+ D++ G + EIE L HP + EA V G+P G+
Sbjct: 498 SGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQ 557
Query: 179 VVVANIELKPG 189
+ A + L G
Sbjct: 558 AIYAYVTLNHG 568
>pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation
pdb|2P2Q|B Chain B, Acetyl-Coa Synthetase, R584e Mutation
Length = 652
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 36/71 (50%)
Query: 119 SGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGE 178
SGD E+GY + GR+ D++ G + EIE L HP + EA V G+P G+
Sbjct: 498 SGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQ 557
Query: 179 VVVANIELKPG 189
+ A + L G
Sbjct: 558 AIYAYVTLNHG 568
>pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation
pdb|2P2J|B Chain B, Acetyl-Coa Synthetase, K609a Mutation
Length = 652
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 36/71 (50%)
Query: 119 SGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGE 178
SGD E+GY + GR+ D++ G + EIE L HP + EA V G+P G+
Sbjct: 498 SGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQ 557
Query: 179 VVVANIELKPG 189
+ A + L G
Sbjct: 558 AIYAYVTLNHG 568
>pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
pdb|2P2F|B Chain B, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
Length = 652
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 36/71 (50%)
Query: 119 SGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGE 178
SGD E+GY + GR+ D++ G + EIE L HP + EA V G+P G+
Sbjct: 498 SGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQ 557
Query: 179 VVVANIELKPG 189
+ A + L G
Sbjct: 558 AIYAYVTLNHG 568
>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A
Nonribosomal Peptide Synthetase Termination Module
Length = 1304
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 64/145 (44%), Gaps = 11/145 (7%)
Query: 69 IKHLIVKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEEN----KILEN-----DEWFPS 119
I + V +++++ + P G GE+C G V GY + K +EN + + +
Sbjct: 783 ISNASVYILNEQSQLQPFGAVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRT 842
Query: 120 GDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEV 179
GD +G + GRI D + G I +EIE LQ +P V +A V V D
Sbjct: 843 GDLARWLPDGTIEYAGRIDDQVKIRGHRIELEEIEKQLQEYPGVKDAVV--VADRHESGD 900
Query: 180 VVANIELKPGASLTQDDIKTYCKGK 204
N L L+ +D+K + K +
Sbjct: 901 ASINAYLVNRTQLSAEDVKAHLKKQ 925
>pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From
Legionella Pneumophila
pdb|3LNV|A Chain A, The Crystal Structure Of Fatty Acyl-Adenylate Ligase From
L. Pneumophila In Complex With Acyl Adenylate And
Pyrophosphate
Length = 590
Score = 43.5 bits (101), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 52/101 (51%), Gaps = 15/101 (14%)
Query: 74 VKVVDKKGNIVP--MGMCGEVCYRGYNVMLGYYGEENKI-------LENDE----WFPSG 120
VK++D ++P GE+ + +V GY+ + + +++DE + +G
Sbjct: 383 VKIIDP-DTLIPCDFDQVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTG 441
Query: 121 DFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHP 161
D LHEN V GRIKD+II G+N P++IE+ L P
Sbjct: 442 DLGFLHENEL-YVTGRIKDLIIIYGKNHYPQDIEFSLXHSP 481
>pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In
Complex With Amp
Length = 663
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 40/78 (51%)
Query: 116 WFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDER 175
++ +GD ++GY ++GR+ D++ G + EIE + P V E V G D+
Sbjct: 504 YYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDDL 563
Query: 176 LGEVVVANIELKPGASLT 193
G+ V A + LK +S +
Sbjct: 564 TGQAVAAFVVLKNKSSWS 581
>pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
pdb|1AMU|B Chain B, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
Length = 563
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/194 (22%), Positives = 84/194 (43%), Gaps = 29/194 (14%)
Query: 4 RHIVKEKCTVLYGTPTMYVDL----ISSIQPL----TEEMPNIAEELSSPVIALTAGAPC 55
++I +++ TV+ PT V L I SIQ L + P++ + V + A P
Sbjct: 267 QYINQKEITVITLPPTYVVHLDPERILSIQTLITAGSATSPSLVNKWKEKVTYINAYGPT 326
Query: 56 SPTL----FNKIRDTFG--------IKHLIVKVVDKKGNIVPMGMCGEVCYRGYNVMLGY 103
T+ + ++T G I++ + +VD+ + +G GE+C G + GY
Sbjct: 327 ETTICATTWVATKETIGHSVPIGAPIQNTQIYIVDENLQLKSVGEAGELCIGGEGLARGY 386
Query: 104 YGE---------ENKILENDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIE 154
+ +N + ++ + +GD +G + +GRI + + G + +E+E
Sbjct: 387 WKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVE 446
Query: 155 YVLQTHPDVVEAQV 168
+L H + E V
Sbjct: 447 SILLKHMYISETAV 460
>pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|B Chain B, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|C Chain C, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|D Chain D, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
Length = 570
Score = 33.5 bits (75), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 43/114 (37%), Gaps = 12/114 (10%)
Query: 76 VVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILEN-----------DEWFPSGDFFI 124
V+D G GE+ G + GY E + + +GD
Sbjct: 396 VLDDDLKPAANGALGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERMYRTGDLAR 455
Query: 125 LHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGE 178
+G + VGR D + G + P E+E L HP V +A V D RLG+
Sbjct: 456 RRADGVLEYVGRADDQVKIRGFRVEPGEVEARLVGHPAVRQAAVL-AQDSRLGD 508
>pdb|3Q1X|A Chain A, Crystal Structure Of Entamoeba Histolytica Serine
Acetyltransferase 1 In Complex With L-Serine
Length = 313
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%)
Query: 28 IQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGIKHLIV 74
+ + E++P+I L + +IA AG P +P L IR G + +IV
Sbjct: 89 VMAILEKLPSIKRTLKTDLIAAYAGDPAAPGLSLIIRCYPGFQAVIV 135
>pdb|3FTJ|A Chain A, Crystal Structure Of The Periplasmic Region Of Macb From
Actinobacillus Actinomycetemcomitans
Length = 226
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 46/105 (43%), Gaps = 19/105 (18%)
Query: 107 ENKILENDEWFPSGDFFILHENGYGQVVGR-IKDIIIRGGENIIPKEIEYVLQTHPDV-- 163
+ KILEN + I + NG+G R I+++ I N + K+ Y+ P+
Sbjct: 1 QQKILENIRGIGTNTMTIFNGNGFGDRRSRHIQNLKISDA-NTLSKQ-SYIQSVTPNTSS 58
Query: 164 -----------VEAQVYGVPDERLGEVVVANIELKPGASLTQDDI 197
A +YG+ ++ V ++LK G LT+DD+
Sbjct: 59 SGILVVGNKSFTSANLYGIGEQYFD---VEGLKLKQGRLLTEDDV 100
>pdb|3P1B|A Chain A, Crystal Structure Of The Native Serine Acetyltransferase 1
From Entamoeba Histolytica
Length = 314
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%)
Query: 28 IQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGIKHLIV 74
+ + E++P+I L + +IA AG P +P L IR G + +IV
Sbjct: 90 VMAILEKLPSIKRTLKTDLIAAYAGDPAAPGLSLIIRCYPGFQAVIV 136
>pdb|3P47|A Chain A, Crystal Structure Of Entamoeba Histolytica Serine
Acetyltransferase 1 In Complex With L-Cysteine
Length = 315
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%)
Query: 28 IQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGIKHLIV 74
+ + E++P+I L + +IA AG P +P L IR G + +IV
Sbjct: 91 VMAILEKLPSIKRTLKTDLIAAYAGDPAAPGLSLIIRCYPGFQAVIV 137
>pdb|3E7W|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
pdb|3E7X|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
Length = 511
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 47/97 (48%), Gaps = 11/97 (11%)
Query: 67 FGIKHLIVKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGE----ENKILEND-EW-FPSG 120
F + + ++D++G +P G GE+ G +V GY GE E ++ +W + +G
Sbjct: 322 FAKPDMNIFIMDEEGQPLPEGEKGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTG 381
Query: 121 DFFILHENGYGQVV--GRIKDIIIRGGENIIPKEIEY 155
D + + GQ+ GR+ I G + +EIE+
Sbjct: 382 DAGFIQD---GQIFCQGRLDFQIKLHGYRMELEEIEF 415
>pdb|1OE9|B Chain B, Crystal Structure Of Myosin V Motor With Essential Light
Chain - Nucleotide-Free
pdb|1W7I|B Chain B, Crystal Structure Of Myosin V Motor Without Nucleotide
Soaked In 10 Mm Mgadp
pdb|1W7J|B Chain B, Crystal Structure Of Myosin V Motor With Essential Light
Chain + Adp-Befx - Near Rigor
Length = 151
Score = 26.9 bits (58), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 122 FFILHENGYGQVVG-RIKDIIIRGGENIIPKEIEYVLQTHPD 162
F + + G G+V+G ++ ++ GE + +E+E VL H D
Sbjct: 93 FRVFDKEGNGKVMGAELRHVLTTLGEKMTEEEVETVLAGHED 134
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.141 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,727,483
Number of Sequences: 62578
Number of extensions: 305637
Number of successful extensions: 805
Number of sequences better than 100.0: 62
Number of HSP's better than 100.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 719
Number of HSP's gapped (non-prelim): 68
length of query: 204
length of database: 14,973,337
effective HSP length: 94
effective length of query: 110
effective length of database: 9,091,005
effective search space: 1000010550
effective search space used: 1000010550
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)