Query psy13807
Match_columns 204
No_of_seqs 134 out of 1446
Neff 9.9
Searched_HMMs 29240
Date Fri Aug 16 21:00:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13807.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13807hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ni2_A 4-coumarate:COA ligase; 100.0 7.2E-39 2.4E-43 270.6 23.2 196 2-204 263-500 (536)
2 1mdb_A 2,3-dihydroxybenzoate-A 100.0 1.3E-38 4.5E-43 269.1 20.8 195 2-204 264-495 (539)
3 3etc_A AMP-binding protein; ad 100.0 2.5E-38 8.7E-43 269.5 22.5 194 2-203 308-543 (580)
4 2d1s_A Luciferase, luciferin 4 100.0 2.6E-38 8.9E-43 267.8 22.1 196 2-204 275-507 (548)
5 1pg4_A Acetyl-COA synthetase; 100.0 3.1E-38 1.1E-42 272.2 21.5 195 2-203 342-585 (652)
6 4fuq_A Malonyl COA synthetase; 100.0 8.5E-38 2.9E-42 262.2 23.2 194 2-204 236-465 (503)
7 1t5h_X 4-chlorobenzoyl COA lig 100.0 8.3E-38 2.9E-42 262.2 23.1 195 2-203 236-467 (504)
8 3rix_A Luciferase, luciferin 4 100.0 8.1E-39 2.8E-43 271.0 13.4 196 2-204 273-505 (550)
9 3g7s_A Long-chain-fatty-acid-- 100.0 3.4E-37 1.2E-41 261.0 21.2 198 2-204 260-507 (549)
10 3e7w_A D-alanine--poly(phospho 100.0 1.9E-36 6.5E-41 254.4 23.6 194 2-203 226-467 (511)
11 3fce_A D-alanine--poly(phospho 100.0 1.6E-36 5.5E-41 254.8 21.9 195 2-204 227-469 (512)
12 3r44_A Fatty acyl COA syntheta 100.0 3.5E-37 1.2E-41 259.2 17.7 192 2-203 250-477 (517)
13 3o83_A Peptide arylation enzym 100.0 4.6E-38 1.6E-42 266.1 12.0 194 2-203 273-503 (544)
14 3c5e_A Acyl-coenzyme A synthet 100.0 8.4E-37 2.9E-41 259.7 19.4 194 2-203 289-526 (570)
15 3rg2_A Enterobactin synthase c 100.0 4E-36 1.4E-40 257.6 22.9 195 2-203 266-497 (617)
16 1ry2_A Acetyl-coenzyme A synth 100.0 6.7E-37 2.3E-41 264.3 16.5 197 2-203 348-601 (663)
17 1v25_A Long-chain-fatty-acid-C 100.0 9.8E-37 3.4E-41 257.8 15.8 193 2-203 259-499 (541)
18 3l8c_A D-alanine--poly(phospho 100.0 4.1E-36 1.4E-40 252.8 18.9 195 2-203 230-476 (521)
19 4gr5_A Non-ribosomal peptide s 100.0 4.6E-37 1.6E-41 261.3 12.8 193 2-204 295-536 (570)
20 2v7b_A Benzoate-coenzyme A lig 100.0 1.2E-35 4.1E-40 250.4 21.2 195 2-204 266-497 (529)
21 3nyq_A Malonyl-COA ligase; A/B 100.0 3.3E-36 1.1E-40 252.7 16.4 197 2-203 236-472 (505)
22 1amu_A GRSA, gramicidin synthe 100.0 1.6E-35 5.5E-40 251.5 19.1 187 2-203 265-493 (563)
23 3tsy_A Fusion protein 4-coumar 100.0 1.9E-36 6.6E-41 271.2 12.8 196 2-204 310-547 (979)
24 3ipl_A 2-succinylbenzoate--COA 100.0 6.7E-34 2.3E-38 238.2 22.6 184 2-203 243-461 (501)
25 3ivr_A Putative long-chain-fat 100.0 1.2E-35 4.1E-40 249.3 10.8 191 2-204 240-466 (509)
26 2vsq_A Surfactin synthetase su 100.0 1.6E-33 5.3E-38 258.3 20.6 190 2-203 689-924 (1304)
27 3ite_A SIDN siderophore synthe 100.0 1.6E-34 5.6E-39 245.1 12.7 192 2-204 264-507 (562)
28 4dg8_A PA1221; ANL superfamily 100.0 5.2E-33 1.8E-37 238.3 18.0 174 2-186 245-466 (620)
29 3gqw_A Fatty acid AMP ligase; 100.0 5.3E-33 1.8E-37 236.1 15.8 194 2-202 262-523 (576)
30 3kxw_A Saframycin MX1 syntheta 100.0 3.7E-33 1.3E-37 237.8 14.1 196 2-203 252-527 (590)
31 3qov_A Phenylacetate-coenzyme 100.0 3.8E-31 1.3E-35 218.1 19.1 186 2-203 170-399 (436)
32 2y27_A Phenylacetate-coenzyme 100.0 3.5E-30 1.2E-34 212.4 16.0 187 2-203 174-401 (437)
33 2y4o_A Phenylacetate-coenzyme 100.0 5.2E-30 1.8E-34 211.7 16.6 187 2-203 176-405 (443)
34 4gs5_A Acyl-COA synthetase (AM 100.0 2.9E-29 9.8E-34 202.2 10.9 191 2-203 115-318 (358)
35 3t5a_A Long-chain-fatty-acid-- 99.9 1.6E-21 5.6E-26 162.1 10.5 126 2-136 274-480 (480)
36 3hgu_A EHPF; phenazine, antibi 99.5 1.3E-14 4.6E-19 116.7 6.3 127 2-146 197-368 (369)
37 3lax_A Phenylacetate-coenzyme 99.4 2.4E-12 8.2E-17 86.0 8.4 61 135-195 1-61 (109)
38 3gxs_A Phenylacetate-coenzyme 99.3 7.2E-12 2.5E-16 83.6 6.9 55 135-190 1-55 (109)
39 4b2g_A GH3-1 auxin conjugating 98.3 4.4E-06 1.5E-10 70.8 10.0 103 83-200 392-509 (609)
40 4eql_A 4-substituted benzoates 98.2 6.4E-06 2.2E-10 69.6 10.0 63 84-160 381-447 (581)
41 4epl_A Jasmonic acid-amido syn 98.1 1.6E-05 5.5E-10 67.1 10.0 101 83-200 387-499 (581)
42 3bpd_A Uncharacterized protein 52.9 40 0.0014 21.2 5.5 60 139-203 12-71 (100)
43 4ap8_A Molybdopterin synthase 41.5 31 0.0011 23.1 3.7 66 136-201 5-70 (135)
44 2cvi_A 75AA long hypothetical 41.1 54 0.0018 19.2 6.0 43 150-202 15-57 (83)
45 2raq_A Conserved protein MTH88 38.8 70 0.0024 20.0 7.2 60 139-203 12-71 (97)
46 3dxs_X Copper-transporting ATP 38.7 51 0.0018 18.3 4.9 46 149-202 16-61 (74)
47 3ezx_A MMCP 1, monomethylamine 34.0 1.2E+02 0.004 21.8 6.2 51 2-62 135-194 (215)
48 2zbc_A 83AA long hypothetical 33.6 71 0.0024 18.4 5.7 42 150-201 15-56 (83)
49 4a4j_A Pacszia, cation-transpo 33.6 60 0.0021 17.6 5.1 46 149-203 16-61 (69)
50 3zxw_B Ribulose bisphosphate c 29.2 1.2E+02 0.0041 19.7 5.4 40 150-191 70-109 (118)
51 1vd2_A Protein kinase C, IOTA 28.9 72 0.0025 19.6 3.6 41 45-86 17-61 (89)
52 2cqa_A RUVB-like 2; TIP48, TIP 27.9 54 0.0019 20.4 2.9 23 117-139 63-86 (95)
53 3e8v_A Possible transglutamina 26.5 46 0.0016 20.2 2.3 15 72-86 3-17 (82)
54 2bkf_A Zinc-finger protein NBR 24.6 1.2E+02 0.004 18.5 3.9 28 57-84 31-58 (87)
55 3csy_I Envelope glycoprotein G 23.7 74 0.0025 23.4 3.4 30 118-148 132-161 (334)
56 2x3d_A SSO6206; unknown functi 22.9 1.4E+02 0.0049 18.5 6.3 52 149-203 19-70 (96)
57 3l48_A Outer membrane usher pr 21.2 92 0.0032 19.2 3.1 18 72-89 10-27 (94)
58 1y7n_A Amyloid beta A4 precurs 20.6 1.3E+02 0.0046 17.8 3.8 25 136-160 50-78 (90)
59 2ejy_A 55 kDa erythrocyte memb 20.6 1.1E+02 0.0037 18.7 3.4 25 136-160 56-84 (97)
No 1
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=100.00 E-value=7.2e-39 Score=270.55 Aligned_cols=196 Identities=29% Similarity=0.468 Sum_probs=180.7
Q ss_pred HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHh-CCc----------
Q psy13807 2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTF-GIK---------- 70 (204)
Q Consensus 2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~-g~~---------- 70 (204)
+++.++++++|++.++|+++..+++...... .++++||.+++||+++++++.+++.+.| +..
T Consensus 263 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-------~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~ 335 (536)
T 3ni2_A 263 LLGLIEKYKVSIAPVVPPVMMSIAKSPDLDK-------HDLSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEA 335 (536)
T ss_dssp HHHHHHHHTCCEEEECHHHHHHHHTCSCGGG-------SCCTTCCEEEEESSCCCHHHHHHHHHHCTTSEEEEEEECGGG
T ss_pred HHHHHHHhCCeEEEccHHHHHHHHhCccccc-------CCCccceEEEECCCCCCHHHHHHHHHHCCCCCcccccccccc
Confidence 6789999999999999999999998766555 6789999999999999999999999887 333
Q ss_pred ---------------------------ceEEEEECC-CCCcCCCCCeeEEEEEeCcccccccCCcccccC---CCCceec
Q psy13807 71 ---------------------------HLIVKVVDK-KGNIVPMGMCGEVCYRGYNVMLGYYGEENKILE---NDEWFPS 119 (204)
Q Consensus 71 ---------------------------~~~v~i~d~-~g~~~~~~~~Gel~v~~~~~~~~y~~~~~~~~~---~~~~~~T 119 (204)
++.++++|+ +|+++|.|+.|||+++|++++.|||++++.+.. .++||+|
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~~g~~~T 415 (536)
T 3ni2_A 336 GPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASLPRNQPGEICIRGDQIMKGYLNDPEATSRTIDKEGWLHT 415 (536)
T ss_dssp SSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTTCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEE
T ss_pred chhhhcccccCCccccCCCCCeeEeCCCcEEEEEeCCCCcCCCCCCccEEEEeCcccchhhcCChhHHHhhccCCCceEc
Confidence 568899995 599999999999999999999999999988765 6899999
Q ss_pred cceEEEecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCCHHHHHH
Q psy13807 120 GDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKT 199 (204)
Q Consensus 120 GD~~~~~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~ 199 (204)
||++++|+||+++++||.||+||++|++|+|.+||++|.++|+|.+++|++.+++..++.++++|+..++...+.++|++
T Consensus 416 GDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~ 495 (536)
T 3ni2_A 416 GDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPEISDAAVVGLKDEDAGEVPVAFVVKSEKSQATEDEIKQ 495 (536)
T ss_dssp EEEEEECTTSCEEEEEECSCCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHH
T ss_pred ccEEEEcCCceEEEEecccceEEECCEEECHHHHHHHHHhCCCcceEEEEeeecCCCCceeEEEEEecCCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988899999999999888889999999
Q ss_pred HHhcC
Q psy13807 200 YCKGK 204 (204)
Q Consensus 200 ~l~~~ 204 (204)
+|+++
T Consensus 496 ~l~~~ 500 (536)
T 3ni2_A 496 YISKQ 500 (536)
T ss_dssp HHHTT
T ss_pred HHHHh
Confidence 99864
No 2
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=100.00 E-value=1.3e-38 Score=269.13 Aligned_cols=195 Identities=28% Similarity=0.405 Sum_probs=177.3
Q ss_pred HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhCCc-----------
Q psy13807 2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGIK----------- 70 (204)
Q Consensus 2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g~~----------- 70 (204)
+++.|+++++|+++++|+++..+++...... .++++||.+++||+++++++.+++.+.+|..
T Consensus 264 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-------~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~ 336 (539)
T 1mdb_A 264 AFPLIEREKVTITALVPPLAMVWMDAASSRR-------DDLSSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGL 336 (539)
T ss_dssp HHHHHHHHTCSEEEECHHHHHHHHHHHHHCC-------CCCTTCCEEEEESSCCCHHHHTTHHHHTCSEEEEEEECTTSC
T ss_pred HHHHHHHcCCeEEEccHHHHHHHHhCccccC-------CCccceeEEEEcCCCCCHHHHHHHHHHhCCcEEEEEcCCCCc
Confidence 6789999999999999999999988765444 5789999999999999999999999887754
Q ss_pred -----------------------ceEEEEECCCCCcCCCCCeeEEEEEeCcccccccCCcccccC---CCCceeccceEE
Q psy13807 71 -----------------------HLIVKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILE---NDEWFPSGDFFI 124 (204)
Q Consensus 71 -----------------------~~~v~i~d~~g~~~~~~~~Gel~v~~~~~~~~y~~~~~~~~~---~~~~~~TGD~~~ 124 (204)
...++++|++|+++|.|+.|||+++||+++.|||++++.+.. .++||+|||+++
T Consensus 337 ~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~ 416 (539)
T 1mdb_A 337 VNYTRLDDPEEIIVNTQGKPMSPYDESRVWDDHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVR 416 (539)
T ss_dssp EEECCTTSCHHHHHHCCCEESSTTCEEEEECTTSCBCCTTCCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEE
T ss_pred ccccCCCCcHHhcCCCCCcccCCCceEEEECCCCCCCcCCCcceEEeeCcccchhhcCChhhhhhhccCCCCeecCceEE
Confidence 237899999999999999999999999999999999987765 589999999999
Q ss_pred EecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCCHHHHHHHHhcC
Q psy13807 125 LHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCKGK 204 (204)
Q Consensus 125 ~~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~~ 204 (204)
+|+||+++|.||.||+||++|++|+|.+||++|.++|+|.+++|++.+++..++.++|+|++.+ ...+.++++++|+++
T Consensus 417 ~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~-~~~~~~~l~~~l~~~ 495 (539)
T 1mdb_A 417 LTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRD-EAPKAAELKAFLRER 495 (539)
T ss_dssp ECTTSCEEEEEEGGGCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESS-SCCCHHHHHHHHHHT
T ss_pred ECCCCcEEEeccccceEEECCEEECHHHHHHHHHhCCCcceEEEEeccccccCceEEEEEEECC-CCCCHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999888889999999873 467888999988763
No 3
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=100.00 E-value=2.5e-38 Score=269.50 Aligned_cols=194 Identities=29% Similarity=0.473 Sum_probs=175.0
Q ss_pred HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhCCc-----------
Q psy13807 2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGIK----------- 70 (204)
Q Consensus 2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g~~----------- 70 (204)
+++.|+++++|.++++|++++.|++.. ... .++++||.+++||+++++++.++|.+.+|..
T Consensus 308 ~~~~i~~~~vt~~~~~P~~~~~l~~~~-~~~-------~~l~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~ 379 (580)
T 3etc_A 308 MLEKASKYGVTTFCAPPTIYRFLIKED-LSH-------YNFSTLKYAVVAGEPLNPEVFNRFLEFTGIKLMEGFGQTETV 379 (580)
T ss_dssp HHHHHHHHTCCEEEECHHHHHHHHTSC-C----------CCTTCCEEEECSSCCCHHHHHHHHHHHSCCCEEEECCTTSS
T ss_pred HHHHHHHHCCeEEEccHHHHHHHHhcc-ccc-------CCCccceEEEEccCCCCHHHHHHHHHHhCCeEeccccccccc
Confidence 688999999999999999999998752 222 5789999999999999999999999987765
Q ss_pred ---------------------ceEEEEECCCCCcCCCCCeeEEEEEe-----CcccccccCCcccccC--CCCceeccce
Q psy13807 71 ---------------------HLIVKVVDKKGNIVPMGMCGEVCYRG-----YNVMLGYYGEENKILE--NDEWFPSGDF 122 (204)
Q Consensus 71 ---------------------~~~v~i~d~~g~~~~~~~~Gel~v~~-----~~~~~~y~~~~~~~~~--~~~~~~TGD~ 122 (204)
++.++++|++|+++|.|+.|||++++ ++++.|||++++.+.. .+|||+|||+
T Consensus 380 ~~~~~~~~~~~~~~~~G~p~~~~~v~ivd~~g~~~~~g~~GEl~v~~~~g~~~~~~~gY~~~p~~t~~~f~~gwy~TGDl 459 (580)
T 3etc_A 380 VTIATFPWMEPKPGSIGKPTPGYKIELMDRDGRLCEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETWHDGYYHTGDM 459 (580)
T ss_dssp CCEECCTTSCCCTTCCBEECTTCEEEEECTTSCBCCTTCCEEEEEECTTCCCTTCCCEETTCHHHHHHHEETTEEEEEEE
T ss_pred ceeecCCCCCCCCCccccCCCCCEEEEECCCCCCCCCCCceEEEEecCCCCCCeeeccccCCHhHHHhhcCCCEEecCcE
Confidence 68899999999999999999999997 7899999999998876 7899999999
Q ss_pred EEEecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCCH---HHHHH
Q psy13807 123 FILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQ---DDIKT 199 (204)
Q Consensus 123 ~~~~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~---~~l~~ 199 (204)
+++|+||+++|.||+||+||++|++|+|.|||++|.++|+|.+++|++.+++..++.+.|+|++.++...+. ++|++
T Consensus 460 g~~d~dG~l~~~GR~dd~Ik~~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~~~~~g~~~~a~vv~~~~~~~~~~~~~~l~~ 539 (580)
T 3etc_A 460 AWMDEDGYLWFVGRADDIIKTSGYKVGPFEVESALIQHPAVLECAITGVPDPVRGQVIKATIVLTKDYTPSDSLKNELQD 539 (580)
T ss_dssp EEECTTSCEEEEEESSSCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHH
T ss_pred EEECCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCeeeEEEEeeeccCCCcEEEEEEEECCCCCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999988755543 57777
Q ss_pred HHhc
Q psy13807 200 YCKG 203 (204)
Q Consensus 200 ~l~~ 203 (204)
+|++
T Consensus 540 ~l~~ 543 (580)
T 3etc_A 540 HVKN 543 (580)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7764
No 4
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=100.00 E-value=2.6e-38 Score=267.82 Aligned_cols=196 Identities=29% Similarity=0.423 Sum_probs=179.1
Q ss_pred HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhC-Cc----------
Q psy13807 2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFG-IK---------- 70 (204)
Q Consensus 2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g-~~---------- 70 (204)
+++.|+++++|+++++|++++.|.+...... .+++++|.+++||+++++++.+++.+.|+ ..
T Consensus 275 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-------~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~ 347 (548)
T 2d1s_A 275 FLKTLQDYKCTSVILVPTLFAILNKSELLNK-------YDLSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTET 347 (548)
T ss_dssp HHHHHHHTTEEEEEECHHHHHHHHHCSCGGG-------SCCTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGG
T ss_pred HHHHHHHcCCcEEEecHHHHHHHHhCccccc-------ccccceeEEEEcCccCCHHHHHHHHHHcCCCceeeccccccc
Confidence 6789999999999999999999988755433 57899999999999999999999999884 32
Q ss_pred ----------------------ceEEEEEC-CCCCcCCCCCeeEEEEEeCcccccccCCcccccC---CCCceeccceEE
Q psy13807 71 ----------------------HLIVKVVD-KKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILE---NDEWFPSGDFFI 124 (204)
Q Consensus 71 ----------------------~~~v~i~d-~~g~~~~~~~~Gel~v~~~~~~~~y~~~~~~~~~---~~~~~~TGD~~~ 124 (204)
++.++++| ++|++++.|+.|||+++|++++.|||++++.+.. .++||+|||+++
T Consensus 348 ~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~ 427 (548)
T 2d1s_A 348 TSAIIITPEGDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGY 427 (548)
T ss_dssp SSEEEECCTTCCCTTCCBEECTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEE
T ss_pred cceeeecCcccCCCCCCCccCCCceEEEEeCCcCccCCCCCCeEEEECCHHHhhhhcCChHHhhhcccCCcEEEccCEEE
Confidence 56789999 6799999999999999999999999999987765 589999999999
Q ss_pred EecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCCHHHHHHHHhcC
Q psy13807 125 LHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCKGK 204 (204)
Q Consensus 125 ~~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~~ 204 (204)
+|+||++++.||.||+||++|++|+|.+||++|.++|+|.+++|++.+++..++.++|+|++.++...+.++|+++|+++
T Consensus 428 ~~~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~V~~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~~~~~ 507 (548)
T 2d1s_A 428 YDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGKNMTEKEVMDYVASQ 507 (548)
T ss_dssp ECTTCCEEEEEEGGGCBCBTTCCBCHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHTT
T ss_pred EcCCCeEEEeccccceEEECCEEECHHHHHHHHHhCCCccEEEEEEEEcCCCCeeeEEEEEEcCCCCCCHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999998888899999999887778899999998764
No 5
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=100.00 E-value=3.1e-38 Score=272.21 Aligned_cols=195 Identities=22% Similarity=0.359 Sum_probs=175.6
Q ss_pred HhHHHHHcCccEEEecHHHHHHHHhccCC--CCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhC---Cc------
Q psy13807 2 ISRHIVKEKCTVLYGTPTMYVDLISSIQP--LTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFG---IK------ 70 (204)
Q Consensus 2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~--~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g---~~------ 70 (204)
++++|+++++|+++++|++++.|++.... .. .++++||.+++||+++++++.+++.+.+| +.
T Consensus 342 ~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~-------~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG 414 (652)
T 1pg4_A 342 MCQVVDKHQVNILYTAPTAIRALMAEGDKAIEG-------TDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWW 414 (652)
T ss_dssp HHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTT-------CCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBC
T ss_pred HHHHHHHhCCeEEEeCHHHHHHHHhcCcccccc-------CCcCceEEEEEecCCCCHHHHHHHHHHhCCCCCcEEcccc
Confidence 68999999999999999999999886542 22 57899999999999999999999999887 33
Q ss_pred ----------------------------ceEEEEECCCCCcCCCCCeeEEEEEe--CcccccccCCcccccC-----CCC
Q psy13807 71 ----------------------------HLIVKVVDKKGNIVPMGMCGEVCYRG--YNVMLGYYGEENKILE-----NDE 115 (204)
Q Consensus 71 ----------------------------~~~v~i~d~~g~~~~~~~~Gel~v~~--~~~~~~y~~~~~~~~~-----~~~ 115 (204)
++.++|+|++|++++.|+.|||++++ |+++.|||++++.+.. .+|
T Consensus 415 ~TE~~~~~~~~~~~~~~~~~~s~G~p~~g~~v~i~d~~g~~v~~g~~GEl~i~g~~p~~~~gY~~~~e~~~~~~~~~~~g 494 (652)
T 1pg4_A 415 QTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEGHPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKN 494 (652)
T ss_dssp CGGGSSCSBCCCTTTCCBCTTCCBSBCTTCCEEEECTTCCBCCSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTT
T ss_pred CcccccceecCCCCCcCccCCccccCcCCCeEEEECCCCCCcCCCceEEEEEccCCCchhhhhcCCHHHHHhhhhhcCCC
Confidence 67899999999999999999999999 7899999999987654 478
Q ss_pred ceeccceEEEecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCC--
Q psy13807 116 WFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLT-- 193 (204)
Q Consensus 116 ~~~TGD~~~~~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~-- 193 (204)
||+|||++++|+||+++|+||+||+||++|++|+|.|||++|.+||+|.+++|++.+++..++.++|+|++.++...+
T Consensus 495 ~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~l~a~Vv~~~~~~~~~~ 574 (652)
T 1pg4_A 495 MYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPE 574 (652)
T ss_dssp SEEEEEEEEECTTSCEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHH
T ss_pred EEECCcEEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEEEcCCCCeEEEEEEEECCCCCCCHH
Confidence 999999999999999999999999999999999999999999999999999999999988889999999998876554
Q ss_pred -HHHHHHHHhc
Q psy13807 194 -QDDIKTYCKG 203 (204)
Q Consensus 194 -~~~l~~~l~~ 203 (204)
.++|+++|++
T Consensus 575 ~~~~l~~~l~~ 585 (652)
T 1pg4_A 575 LYAEVRNWVRK 585 (652)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 4677777764
No 6
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=100.00 E-value=8.5e-38 Score=262.19 Aligned_cols=194 Identities=31% Similarity=0.502 Sum_probs=178.5
Q ss_pred HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhCCc-----------
Q psy13807 2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGIK----------- 70 (204)
Q Consensus 2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g~~----------- 70 (204)
+++.++ ++|+++++|+++..+++...... ..++++|.+++||+++++++.+++.+.+|..
T Consensus 236 ~~~~i~--~~t~~~~~P~~~~~l~~~~~~~~-------~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~ 306 (503)
T 4fuq_A 236 ILDLMA--RATVLMGVPTFYTRLLQSPRLTK-------ETTGHMRLFISGSAPLLADTHREWSAKTGHAVLERYGMTETN 306 (503)
T ss_dssp HHHHHT--TCCEEEECHHHHHHHHTCTTCST-------TTTTTCCEEEECSSCCCHHHHHHHHHHHSCCEEECCEETTTE
T ss_pred HHHHHh--hcCEEEEHHHHHHHHHhCCCccc-------cchhhcEEEEECCCCCCHHHHHHHHHHhCCCccceEcccccC
Confidence 456676 89999999999999998776555 6788999999999999999999999987754
Q ss_pred ---------------------ceEEEEEC-CCCCcCCCCCeeEEEEEeCcccccccCCcccccC---CCCceeccceEEE
Q psy13807 71 ---------------------HLIVKVVD-KKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILE---NDEWFPSGDFFIL 125 (204)
Q Consensus 71 ---------------------~~~v~i~d-~~g~~~~~~~~Gel~v~~~~~~~~y~~~~~~~~~---~~~~~~TGD~~~~ 125 (204)
++.++++| ++|+++|.|+.|||+++|++++.|||++++.+.. .++||+|||++++
T Consensus 307 ~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~ 386 (503)
T 4fuq_A 307 MNTSNPYDGDRVPGAVGPALPGVSARVTDPETGKELPRGDIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDLGKI 386 (503)
T ss_dssp ECBCCCSSSCCCTTEEEEBCTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCCCBTTCHHHHHHTBCTTSCEEEEEEEEE
T ss_pred cccccCCCCCCcCCccccCCCCeEEEEEECCCCCCCcCCCceEEEEECCchhhhhcCChhhhHhhhCCCCCeEcceeEEE
Confidence 67899999 6699999999999999999999999999998865 5899999999999
Q ss_pred ecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCCHHHHHHHHhcC
Q psy13807 126 HENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCKGK 204 (204)
Q Consensus 126 ~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~~ 204 (204)
++||+++|+||.||+||++|++|+|.|||++|.++|+|.+++|++.+++..++.++++|++.++...+.++++++|+++
T Consensus 387 ~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~~ 465 (503)
T 4fuq_A 387 DERGYVHILGRGKDLVITGGFNVYPKEIESEIDAMPGVVESAVIGVPHADFGEGVTAVVVRDKGATIDEAQVLHGLDGQ 465 (503)
T ss_dssp CTTCEEEECCSSTTCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHBTT
T ss_pred cCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCeeEEEEEEeEchhcCceeEEEEEeCCCCCCCHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999998888999999999988888999999988764
No 7
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=100.00 E-value=8.3e-38 Score=262.22 Aligned_cols=195 Identities=30% Similarity=0.499 Sum_probs=178.1
Q ss_pred HhHHHHHcCccEEEecHHHHHHHHhccCC--CCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhCCc---------
Q psy13807 2 ISRHIVKEKCTVLYGTPTMYVDLISSIQP--LTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGIK--------- 70 (204)
Q Consensus 2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~--~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g~~--------- 70 (204)
+++.|+++++|+++++|++++.|++.... .. ..+++||.+++||+++++++.+++.+.++..
T Consensus 236 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-------~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE 308 (504)
T 1t5h_X 236 ALQLVQQEQVTSLFATPTHLDALAAAAAHAGSS-------LKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTE 308 (504)
T ss_dssp HHHHHHHHTCCEEECCHHHHHHHHHHHCCTTCC-------CCCTTCCEEEECCTTCCHHHHHHHHHHCCSEEEEEEEETT
T ss_pred HHHHHHHhCCeEEEeChHHHHHHHhhhcccccc-------ccCccccEEEEcCCcCCHHHHHHHHHhcCcceeeeecccc
Confidence 67899999999999999999999887532 22 4689999999999999999999999987754
Q ss_pred --------------------ceEEEEECCCC---CcCCCCCeeEEEEE-eCcccccccCCcccccC--CCCceeccceEE
Q psy13807 71 --------------------HLIVKVVDKKG---NIVPMGMCGEVCYR-GYNVMLGYYGEENKILE--NDEWFPSGDFFI 124 (204)
Q Consensus 71 --------------------~~~v~i~d~~g---~~~~~~~~Gel~v~-~~~~~~~y~~~~~~~~~--~~~~~~TGD~~~ 124 (204)
++.++++|+++ ++++.|+.|||+++ +++++.||+++++.+.. .+|||+|||+++
T Consensus 309 ~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~~~~~~~~~~g~~GEl~v~gg~~~~~GY~~~~~~t~~~f~~g~~~TGDlg~ 388 (504)
T 1t5h_X 309 AMNSLYMRQPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAV 388 (504)
T ss_dssp TEEEEEEESCSSSSEEBCCTTCCEEEECTTSCTTCBCCTTCCEEEEEECCTTSCCCBTTCHHHHHHHEETTEEEEEEEEE
T ss_pred ccccccccCCCCCccccCCCCCceeEEeccCCCCCcCCCCCcceEEEeCCceeeceecCCchhhhhhhcCCccccCcEEE
Confidence 46778888887 89999999999999 89999999999988776 689999999999
Q ss_pred EecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCCHHHHHHHHhc
Q psy13807 125 LHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCKG 203 (204)
Q Consensus 125 ~~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~ 203 (204)
+++||+++|.||.||+||++|++|+|.+||++|.++|+|.+++|++.+++..++.++|+|++.++...+.++++++|++
T Consensus 389 ~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~~~~ 467 (504)
T 1t5h_X 389 WTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRS 467 (504)
T ss_dssp ECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEECSSSSEEEEEEEEECTTCCCCHHHHHHHHHT
T ss_pred ECCCceEEEeCcccCEEEECCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCcEEEEEEEecCCcCcCHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999888899999999988877889999999875
No 8
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=100.00 E-value=8.1e-39 Score=270.97 Aligned_cols=196 Identities=28% Similarity=0.438 Sum_probs=115.2
Q ss_pred HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhCCc-----------
Q psy13807 2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGIK----------- 70 (204)
Q Consensus 2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g~~----------- 70 (204)
+++.|+++++|.++++|+++..|++...... .++++||.+++||+++++++.+++.+.++..
T Consensus 273 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-------~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~v~~~YG~TE~ 345 (550)
T 3rix_A 273 FLRSLQDYKIQSALLVPTLFSFFAKSTLIDK-------YDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTET 345 (550)
T ss_dssp HHHHHHHTTCSEEEECHHHHHHHHHCCGGGG-------SCCTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGG
T ss_pred HHHHHHHcCCeEEEeCcHHHHHHHhCccccc-------cCcccccEEEEecCCCCHHHHHHHHHHcCCCccccccCcCcc
Confidence 6789999999999999999999998765544 6789999999999999999999999998753
Q ss_pred ----------------------ceEEEEECC-CCCcCCCCCeeEEEEEeCcccccccCCcccccC---CCCceeccceEE
Q psy13807 71 ----------------------HLIVKVVDK-KGNIVPMGMCGEVCYRGYNVMLGYYGEENKILE---NDEWFPSGDFFI 124 (204)
Q Consensus 71 ----------------------~~~v~i~d~-~g~~~~~~~~Gel~v~~~~~~~~y~~~~~~~~~---~~~~~~TGD~~~ 124 (204)
++.++++|+ +|++++.|+.|||+++|++++.|||++++.+.. .+|||+|||+++
T Consensus 346 ~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~g~~~TGDl~~ 425 (550)
T 3rix_A 346 TSAILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAY 425 (550)
T ss_dssp SSEEEECCTTCCCTTEEEEECTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEE
T ss_pred ccceecCCCCCCCCCCcccccCCcEEEEEeCCCCcCCCCCCCeEEEEeCCCcchhhcCChhhhhhhcCCCCCeecCcEEE
Confidence 678899995 599999999999999999999999999988765 689999999999
Q ss_pred EecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCCHHHHHHHHhcC
Q psy13807 125 LHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCKGK 204 (204)
Q Consensus 125 ~~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~~ 204 (204)
+|+||++++.||.||+||++|++|+|.+||++|.++|+|.+++|++.+++..++.++++|++.++...+.++++++|+++
T Consensus 426 ~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~~~~~ 505 (550)
T 3rix_A 426 WDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEKEIVDYVASQ 505 (550)
T ss_dssp ECTTCCEEEC----------------------------------------------------------------------
T ss_pred EeCCceEEEEecchheeEECCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCceEEEEEEecCCCCCCHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999998889999999999888777788888877653
No 9
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=100.00 E-value=3.4e-37 Score=260.98 Aligned_cols=198 Identities=28% Similarity=0.472 Sum_probs=160.1
Q ss_pred HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHH----hCC--------
Q psy13807 2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDT----FGI-------- 69 (204)
Q Consensus 2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~----~g~-------- 69 (204)
+++.|+++++|+++++|++++.|++....... ..+++++|.+++||+++++++.+++.+. ++.
T Consensus 260 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~-----~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (549)
T 3g7s_A 260 LAENIEKYKGTFSWAVPPALNVLVNTLESSNK-----TYDWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQI 334 (549)
T ss_dssp HHHHHHHTTCCEEEECHHHHHHHHHHHHHSCC-----CCCCTTCCEEEEESSCCCHHHHHHHHHHHHHHSSCTTCEEEEE
T ss_pred HHHHHHHhCCeEEEeCCHHHHHHHhhhhhhcc-----cCCccceeEEEeCCccCCHHHHHHHHHHHHhhcCCccccccce
Confidence 67899999999999999999999886533220 1468899999999999999999999887 452
Q ss_pred ---c-------------------------ceEEEEEC-CCCCcCCCCCeeEEEEEeCcccccccCCcccccC-----CCC
Q psy13807 70 ---K-------------------------HLIVKVVD-KKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILE-----NDE 115 (204)
Q Consensus 70 ---~-------------------------~~~v~i~d-~~g~~~~~~~~Gel~v~~~~~~~~y~~~~~~~~~-----~~~ 115 (204)
+ ++.++++| ++|++++.|+.|||+++|++++.|||++++.+.. .+|
T Consensus 335 YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~g 414 (549)
T 3g7s_A 335 WGMTEACPMVTTNPPLRLDKSTTQGVPMSDIELKVISLEDGRELGVGESGEIVIRGPNIFKGYWKREKENQECWWYDEKG 414 (549)
T ss_dssp EECGGGSSEEEECCGGGGGGTTSCCEECTTCEEEEECSSSCCEECTTCCEEEEEESTTSCSEETTCTTGGGTSEEECTTC
T ss_pred EeccccchhhhcCCccccCcCCCccccCCCCEEEEEeCCCCcCCCCCCceEEEEECcchhhhhCCChhhhhhhhhccCCC
Confidence 1 67899999 7799999999999999999999999999998875 455
Q ss_pred --ceeccceEEEecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCC--CC
Q psy13807 116 --WFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPG--AS 191 (204)
Q Consensus 116 --~~~TGD~~~~~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~--~~ 191 (204)
||+|||++++|+||+++|.||.||+||++|++|+|.|||++|.++|+|.+++|++.+++..++.++|+|++.++ ..
T Consensus 415 ~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~ 494 (549)
T 3g7s_A 415 RKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELEALLMKHEAVMDVAVIGKPDEEAGEVPKAFIVLKPEYRGK 494 (549)
T ss_dssp CEEEEEEEEEEECTTSCEEEEEEC------------CHHHHHHHTTSTTEEEEEEECCCC------CEEEEEECSTTTTS
T ss_pred CceEccCcEEEEcCCceEEEeccccceEEECCEEECHHHHHHHHHhCCCeeeEEEEeeEccccCceEEEEEEECCCccCc
Confidence 99999999999999999999999999999999999999999999999999999999998888999999999876 56
Q ss_pred CCHHHHHHHHhcC
Q psy13807 192 LTQDDIKTYCKGK 204 (204)
Q Consensus 192 ~~~~~l~~~l~~~ 204 (204)
.+.++|+++|+++
T Consensus 495 ~~~~~l~~~l~~~ 507 (549)
T 3g7s_A 495 VDEEDIIEWVRER 507 (549)
T ss_dssp CCHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHh
Confidence 7889999999864
No 10
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=100.00 E-value=1.9e-36 Score=254.37 Aligned_cols=194 Identities=20% Similarity=0.211 Sum_probs=172.3
Q ss_pred HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHh-CCc----------
Q psy13807 2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTF-GIK---------- 70 (204)
Q Consensus 2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~-g~~---------- 70 (204)
+++.++++++|.+.++|++++.++....... ..++++|.+++||+++++++.+++.+.| +..
T Consensus 226 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-------~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~ 298 (511)
T 3e7w_A 226 LFEELKKSGLNVWTSTPSFVQMCLMDPGFSQ-------DLLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEA 298 (511)
T ss_dssp HHHHHHHHCCSEEEECHHHHHHHHTSTTCST-------TTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEECCCCGGG
T ss_pred HHHHHHHcCCcEEEecHHHHHHHHhcccccc-------ccCCcccEEEEecCCCCHHHHHHHHHHCCCcEEEeCcccchh
Confidence 6789999999999999999999988766555 6789999999999999999999999987 333
Q ss_pred ---------------------------ceEEEEECCCCCcCCCCCeeEEEEEeCcccccccCCcccccC----CCC--ce
Q psy13807 71 ---------------------------HLIVKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILE----NDE--WF 117 (204)
Q Consensus 71 ---------------------------~~~v~i~d~~g~~~~~~~~Gel~v~~~~~~~~y~~~~~~~~~----~~~--~~ 117 (204)
++.++++|++|+++|.|+.|||+++||+++.|||++++.+.. .++ ||
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~g~~~~ 378 (511)
T 3e7w_A 299 TVAVTSVEITNDVISRSESLPVGFAKPDMNIFIMDEEGQPLPEGEKGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAY 378 (511)
T ss_dssp SSCSEEEEECHHHHTTCSSCCCBEECTTCEEEEECTTSCBCCTTCCEEEEEESTTSCCCBTTCHHHHHHHEEESSSSEEE
T ss_pred eeeeeEEeccccccccCCcCCCcceeCCCEEEEECCCCCCCCCCCceEEEEecCccChhhCCCcccchhhhcCCCCCEEE
Confidence 567899999999999999999999999999999999987765 233 79
Q ss_pred eccceEEEecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCCH---
Q psy13807 118 PSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQ--- 194 (204)
Q Consensus 118 ~TGD~~~~~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~--- 194 (204)
+|||++++ +||++++.||.||+||++|++|+|.+||++|.++|+|.+++|++.+++..++.++++|++.++...+.
T Consensus 379 ~TGDlg~~-~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~~~~~~ 457 (511)
T 3e7w_A 379 RTGDAGFI-QDGQIFCQGRLDFQIKLHGYRMELEEIEFHVRQSQYVRSAVVIPYQPNGTVEYLIAAIVPEEHEFEKEFQL 457 (511)
T ss_dssp EEEEEEEE-ETTEEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEECSSSSCCEEEEEEEECCCCCSSHHHH
T ss_pred eCCCeEEc-cCCeEEEEccccCEEEECCEEeCHHHHHHHHHhCCCcceEEEEEEcCCCCceEEEEEEEeccccccchhhH
Confidence 99999999 59999999999999999999999999999999999999999999998888889999999987655543
Q ss_pred -HHHHHHHhc
Q psy13807 195 -DDIKTYCKG 203 (204)
Q Consensus 195 -~~l~~~l~~ 203 (204)
++++++|++
T Consensus 458 ~~~l~~~l~~ 467 (511)
T 3e7w_A 458 TSAIKKELAA 467 (511)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 556666654
No 11
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=100.00 E-value=1.6e-36 Score=254.83 Aligned_cols=195 Identities=19% Similarity=0.186 Sum_probs=173.2
Q ss_pred HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHh-CCc----------
Q psy13807 2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTF-GIK---------- 70 (204)
Q Consensus 2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~-g~~---------- 70 (204)
+++.++++++|.+.++|++++.++....... ..++++|.+++||+++++++.+++.+.| +..
T Consensus 227 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-------~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~ 299 (512)
T 3fce_A 227 LFASLEQSDIQVWTSTPSFAEMCLMEASFSE-------SMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEA 299 (512)
T ss_dssp HHHHHHHHCCCEEEECHHHHHHHTTSTTCST-------TTSTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGG
T ss_pred HHHHHHHcCCcEEEecHHHHHHHHhhccccc-------hhCccccEEEEecCcCCHHHHHHHHHHCCCCEEEeCcccChh
Confidence 6788999999999999999999988766555 6789999999999999999999999987 332
Q ss_pred ---------------------------ceEEEEECCCCCcCCCCCeeEEEEEeCcccccccCCcccccC------CCCce
Q psy13807 71 ---------------------------HLIVKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILE------NDEWF 117 (204)
Q Consensus 71 ---------------------------~~~v~i~d~~g~~~~~~~~Gel~v~~~~~~~~y~~~~~~~~~------~~~~~ 117 (204)
++.++++|++|++++.|+.|||+++||+++.|||++++.+.. .++||
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~ 379 (512)
T 3fce_A 300 TVAVTGIHVTEEVLDQYKSLPVGYCKSDCRLLIMKEDGTIAPDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAY 379 (512)
T ss_dssp SSCSEEEECCHHHHHHCSSCCCEEECTTCEEEEECSSSCBCCTTSCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEE
T ss_pred hhheeeEEeccccccccCCCccccccCCcEEEEECCCCCCCCCCCeEEEEEeccccChhhcCCchhhhhccccCCCCEEE
Confidence 567899999999999999999999999999999999987765 36799
Q ss_pred eccceEEEecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCCH---
Q psy13807 118 PSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQ--- 194 (204)
Q Consensus 118 ~TGD~~~~~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~--- 194 (204)
+|||++++ +||++++.||.||+||++|++|+|.+||++|.++|+|.+++|++.+++..++.++|+|++.++...+.
T Consensus 380 ~TGDlg~~-~dG~l~i~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~~~~~~ 458 (512)
T 3fce_A 380 KTGDAGYV-ENGLLFYNGRLDFQIKLHGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVVVPGEHSFEKEFKL 458 (512)
T ss_dssp EEEEEEEE-ETTEEEEEEEGGGCEEETTEEECHHHHHHHHHHSTTEEEEEEEEEEETTEEEEEEEEEEECSCCCSSHHHH
T ss_pred eCCceEEe-cCCEEEEecccCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEEecCCCceEEEEEEecCCccccchhhh
Confidence 99999999 79999999999999999999999999999999999999999999998888889999999987644443
Q ss_pred -HHHHHHHhcC
Q psy13807 195 -DDIKTYCKGK 204 (204)
Q Consensus 195 -~~l~~~l~~~ 204 (204)
++++++|+++
T Consensus 459 ~~~l~~~l~~~ 469 (512)
T 3fce_A 459 TSAIKKELNER 469 (512)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHhh
Confidence 4677776653
No 12
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=100.00 E-value=3.5e-37 Score=259.20 Aligned_cols=192 Identities=28% Similarity=0.445 Sum_probs=173.9
Q ss_pred HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhCCc-----------
Q psy13807 2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGIK----------- 70 (204)
Q Consensus 2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g~~----------- 70 (204)
+++.++++++|.+.++|++++.|.+...... .+++++|.+++||+++++++.+++.+. +..
T Consensus 250 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-------~~~~~lr~i~~gGe~l~~~~~~~~~~~-~~~~~~~YG~TE~~ 321 (517)
T 3r44_A 250 VWSLIVEERVCIGGAVPAILNFMRQVPEFAE-------LDAPDFRYFITGGAPMPEALIKIYAAK-NIEVVQGYALTESC 321 (517)
T ss_dssp HHHHHHHTTCCEEEECHHHHHHHHHSHHHHH-------CCCTTCCEEEECSSCCCHHHHHHHHHT-TCEEEEEEECGGGT
T ss_pred HHHHHHHhCCeEEEeHHHHHHHHHhCccccc-------CCCCcccEEEECCCCCCHHHHHHHHhc-CCcEEEeecccccc
Confidence 6789999999999999999999988754433 578899999999999999999999876 332
Q ss_pred -----------------------ceEEEEECCCCCcCCCCCeeEEEEEeCcccccccCCcccccC--CCCceeccceEEE
Q psy13807 71 -----------------------HLIVKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILE--NDEWFPSGDFFIL 125 (204)
Q Consensus 71 -----------------------~~~v~i~d~~g~~~~~~~~Gel~v~~~~~~~~y~~~~~~~~~--~~~~~~TGD~~~~ 125 (204)
++.++++|++|.+++.| .|||+++|++++.|||++++.+.. .++||+|||++++
T Consensus 322 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~g-~GEl~v~g~~v~~GY~~~p~~t~~~f~~g~~~TGDl~~~ 400 (517)
T 3r44_A 322 GGGTLLLSEDALRKAGSAGRATMFTDVAVRGDDGVIREHG-EGEVVIKSDILLKEYWNRPEATRDAFDNGWFRTGDIGEI 400 (517)
T ss_dssp TCEEEECGGGTTTTTTCCBEECTTEEEEEECTTSCEESSE-EEEEEEEETTSCSEETTCHHHHHHTEETTEEEEEEEEEE
T ss_pred cceeecCCccccccCCCCCcCCCCeEEEEECCCCCCCCCC-CeEEEEeCcchhhhhCCChhhhHhhhcCCCEecceeEEE
Confidence 67889999999999998 899999999999999999998876 6899999999999
Q ss_pred ecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCCHHHHHHHHhc
Q psy13807 126 HENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCKG 203 (204)
Q Consensus 126 ~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~ 203 (204)
++||+++|.||.||+||++|++|+|.|||++|.++|+|.+++|++.+++..++.++++| +.++...+.++|+++|++
T Consensus 401 ~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~v-~~~~~~~~~~~l~~~l~~ 477 (517)
T 3r44_A 401 DDEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAAAIV-VADQNEVSEQQIVEYCGT 477 (517)
T ss_dssp CTTSCEEEEECGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEE-EECTTTCCHHHHHHHHHH
T ss_pred cCCeeEEEecCCcCEEEECCEEECHHHHHHHHHhCCCEeEEEEEeccccccCceEEEEE-ECCCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988888888888 555667888999998875
No 13
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=100.00 E-value=4.6e-38 Score=266.08 Aligned_cols=194 Identities=26% Similarity=0.386 Sum_probs=119.7
Q ss_pred HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhCCc-----------
Q psy13807 2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGIK----------- 70 (204)
Q Consensus 2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g~~----------- 70 (204)
+++.++++++|.+.++|+++..+++...... .++++||.+++||+++++++.+++.+.+|+.
T Consensus 273 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-------~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~ 345 (544)
T 3o83_A 273 CFSIIQRHQVNMASLVPSAVIMWLEKAAQYK-------DQIQSLKLLQVGGASFPESLARQVPEVLNCKLQQVFGMAEGL 345 (544)
T ss_dssp HHHHHHHHTCCEEEECHHHHHHHHHHHTTTH-------HHHTTCCEEEEESSCCCHHHHTHHHHHHCSEEEEEEECTTSC
T ss_pred HHHHHHHHCCCEEEechHHHHHHHhchhhcc-------ccCCcceEEEEcCCCCCHHHHHHHHHHhCCcEEeeecccccc
Confidence 6789999999999999999999998776554 5788999999999999999999999987754
Q ss_pred -----------------------ceEEEEECCCCCcCCCCCeeEEEEEeCcccccccCCcccccC---CCCceeccceEE
Q psy13807 71 -----------------------HLIVKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILE---NDEWFPSGDFFI 124 (204)
Q Consensus 71 -----------------------~~~v~i~d~~g~~~~~~~~Gel~v~~~~~~~~y~~~~~~~~~---~~~~~~TGD~~~ 124 (204)
++.++++|++|+++|.|+.|||+++||+++.|||++++.+.. .++||+|||+++
T Consensus 346 ~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~ 425 (544)
T 3o83_A 346 VNYTRLDDSDEQIFTTQGRPISSDDEIKIVDEQYREVPEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQ 425 (544)
T ss_dssp EEECCTTSCHHHHHHCCCEESCTTCEEEEECTTSCBCCTTCCEEEEEECTTSCSCCTTCHHHHHHHBCTTCCEEEEEEEE
T ss_pred ceeecCCCchhhccCCCceecCCCcEEEEECCCCCCCCCCCeeEEEEecCCcchhhcCChhhhhhhCCCCCCeEcCCEEE
Confidence 558899999999999999999999999999999999988765 689999999999
Q ss_pred EecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCCHHHHHHHHhc
Q psy13807 125 LHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCKG 203 (204)
Q Consensus 125 ~~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~ 203 (204)
+++||+++|+||.||+||++|++|+|.|||++|.++|+|.+++|++.+++..++.++++|+..+ ...+.+++++++++
T Consensus 426 ~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~-~~~~~~~l~~~~~~ 503 (544)
T 3o83_A 426 RTPDGNLRVVGRIKDQINRGGEKIASEEIEKLILLHPEVMHAALVAIVDEQFGEKSCAFIVSRN-PELKAVVLRRHLME 503 (544)
T ss_dssp ECTTSCEEEEEEEC-----------------------------------------------------------------
T ss_pred EcCCCCEEEEeecCCEEEeCCEEECHHHHHHHHHhCCCccEEEEEeccCCCCCceEEEEEEeCC-CCCCHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999888899999999875 34566677776654
No 14
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=100.00 E-value=8.4e-37 Score=259.68 Aligned_cols=194 Identities=28% Similarity=0.423 Sum_probs=172.4
Q ss_pred HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhCCc-----------
Q psy13807 2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGIK----------- 70 (204)
Q Consensus 2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g~~----------- 70 (204)
+++.|+++++|.++++|++++.|++.. ... .+++++|.+++||+++++++.+++.+.+|..
T Consensus 289 ~~~~i~~~~~t~~~~~P~~~~~l~~~~-~~~-------~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~ 360 (570)
T 3c5e_A 289 ILKTLSSYPIKSMMGAPIVYRMLLQQD-LSS-------YKFPHLQNCVTVGESLLPETLENWRAQTGLDIRESYGQTETG 360 (570)
T ss_dssp HHHHHHHSCCCEEEECHHHHHHHHTSC-TTT-------CCCTTCCEEEEESSCCCHHHHHHHHHHHSCCCEEEEEETTTE
T ss_pred HHHHHHHhCCeEEeccHHHHHHHHhcc-ccc-------cccccceEEEEcCCcCCHHHHHHHHHHhCCchhhccchhhcc
Confidence 678999999999999999999998762 222 4688999999999999999999999988765
Q ss_pred ---------------------ceEEEEECCCCCcCCCCCeeEEEEE-----eCcccccccCCcccccC--CCCceeccce
Q psy13807 71 ---------------------HLIVKVVDKKGNIVPMGMCGEVCYR-----GYNVMLGYYGEENKILE--NDEWFPSGDF 122 (204)
Q Consensus 71 ---------------------~~~v~i~d~~g~~~~~~~~Gel~v~-----~~~~~~~y~~~~~~~~~--~~~~~~TGD~ 122 (204)
++.++++|++|+++|.|+.|||+++ |++++.|||++++.+.. .++||+|||+
T Consensus 361 ~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~g~~~~~G~~GEl~v~~~~~~g~~v~~GY~~~~~~t~~~f~~~~~~TGDl 440 (570)
T 3c5e_A 361 LTCMVSKTMKIKPGYMGTAASCYDVQIIDDKGNVLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWLLGDR 440 (570)
T ss_dssp EEEECCTTSCCCTTCCCEECTTCCEEEECTTSCBCCTTCCEEEEEECSSBCCTTCCCEETTCHHHHHHTEETTEEEEEEE
T ss_pred cceecCcccccCCCcccccCCCceEEEECCCCCCCCCCCCCeeEEeccCCCCchhhccccCChhHhhhhhcCCcccccee
Confidence 5688999999999999999999999 99999999999988765 5899999999
Q ss_pred EEEecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCC-CC----HHHH
Q psy13807 123 FILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGAS-LT----QDDI 197 (204)
Q Consensus 123 ~~~~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~-~~----~~~l 197 (204)
+++|+||+++|.||.||+||++|++|+|.+||++|.++|+|.+++|++.+++..++.++|+|++.++.. .+ .++|
T Consensus 441 g~~d~dG~l~~~GR~dd~Ik~~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~~~~~~l 520 (570)
T 3c5e_A 441 GIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVVLASQFLSHDPEQLTKEL 520 (570)
T ss_dssp EEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECGGGTTSCHHHHHHHH
T ss_pred EEEcCCceEEEEecCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEeeeCCCCCeEEEEEEEECCcccCcchHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999888889999999876531 12 4567
Q ss_pred HHHHhc
Q psy13807 198 KTYCKG 203 (204)
Q Consensus 198 ~~~l~~ 203 (204)
+++|++
T Consensus 521 ~~~l~~ 526 (570)
T 3c5e_A 521 QQHVKS 526 (570)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 776654
No 15
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=100.00 E-value=4e-36 Score=257.64 Aligned_cols=195 Identities=29% Similarity=0.399 Sum_probs=175.8
Q ss_pred HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhCCc-----------
Q psy13807 2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGIK----------- 70 (204)
Q Consensus 2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g~~----------- 70 (204)
+++.++++++|++.++|+++..+++....... ...++++|.+++||+++++++.+++.+.+|+.
T Consensus 266 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~-----~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~~~~YG~tE~~ 340 (617)
T 3rg2_A 266 CFPLIEKHQVNVTALVPPAVSLWLQALIEGES-----RAQLASLKLLQVGGARLSATLAARIPAEIGCQLQQVFGMAEGL 340 (617)
T ss_dssp HHHHHHHTTCCEEEECHHHHHHHHHHHHTTCC-----TTTTTTCCEEEEESSCCCHHHHHHHHHHTCSEEEEEEEETTEE
T ss_pred HHHHHHHhCCcEEEcchHHHHHHHHhhhcccc-----cccCCCccEEEEcCCcCCHHHHHHHHHHhCCcEEEEeccCcce
Confidence 56889999999999999999999876533220 03689999999999999999999999887654
Q ss_pred -----------------------ceEEEEECCCCCcCCCCCeeEEEEEeCcccccccCCcccccC---CCCceeccceEE
Q psy13807 71 -----------------------HLIVKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILE---NDEWFPSGDFFI 124 (204)
Q Consensus 71 -----------------------~~~v~i~d~~g~~~~~~~~Gel~v~~~~~~~~y~~~~~~~~~---~~~~~~TGD~~~ 124 (204)
+..++++|++|+++|.|+.|||+++|++++.|||++++.+.. .++||+|||+++
T Consensus 341 ~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d~~~~~~p~G~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~~~yrTGDl~~ 420 (617)
T 3rg2_A 341 VNYTRLDDSAEKIIHTQGYPMCPDDEVWVADAEGNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLIS 420 (617)
T ss_dssp EEECCTTSCHHHHHHCCCEESCTTCEEEEECTTSCBCCTTCCEEEEEECSSSCSCCTTCHHHHHHHBCTTSCEEEEEEEE
T ss_pred eecccCCCcccccccCCCccCCCCceEEEECCCCCCCCCCCceEEEecCccccchhcCChhhhhhccCCCCceecCceEE
Confidence 458899999999999999999999999999999999998876 689999999999
Q ss_pred EecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCCHHHHHHHHhc
Q psy13807 125 LHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCKG 203 (204)
Q Consensus 125 ~~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~ 203 (204)
+++||.++|+||.||+||++|++|+|.|||+.|.++|+|.+++|++.+++..++.++++++..+ ..+.+++++++++
T Consensus 421 ~~~dG~l~~~GR~dd~iki~G~ri~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~--~~~~~~l~~~l~~ 497 (617)
T 3rg2_A 421 IDPEGYITVQGREKDQINRGGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKSCAYLVVKE--PLRAVQVRRFLRE 497 (617)
T ss_dssp ECTTSCEEEEEECSSEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESS--CCCHHHHHHHHHT
T ss_pred EcCCceEEEEeecCCEEEECCEEeCHHHHHHHHHhCCCeeEEEEEeccCcccCeeEEEEEEeCC--CCCHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999998888889999999875 4778889988875
No 16
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=100.00 E-value=6.7e-37 Score=264.28 Aligned_cols=197 Identities=21% Similarity=0.275 Sum_probs=169.8
Q ss_pred HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhC---Cc--------
Q psy13807 2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFG---IK-------- 70 (204)
Q Consensus 2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g---~~-------- 70 (204)
++++|+++++|+++++|++++.|.+...... ...++++||.+++||+++++++++++.+.+| ++
T Consensus 348 ~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~-----~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~T 422 (663)
T 1ry2_A 348 YWDIIDEHKVTQFYVAPTALRLLKRAGDSYI-----ENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQT 422 (663)
T ss_dssp HHHHHHHTTCSEEEECHHHHHHHTTSCTTSS-----SSCCCTTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCT
T ss_pred HHHHHHHcCCCEEEecHHHHHHHHhcCcccc-----ccCCcCceEEEEEEcCCCCHHHHHHHHHHhCCCCceEEEeECCc
Confidence 7899999999999999999999987654211 0157899999999999999999999999887 32
Q ss_pred ---------------------------ceEEEEECC-CCCcCCC-CCeeEEEEEe--CcccccccCCcccccC-----CC
Q psy13807 71 ---------------------------HLIVKVVDK-KGNIVPM-GMCGEVCYRG--YNVMLGYYGEENKILE-----ND 114 (204)
Q Consensus 71 ---------------------------~~~v~i~d~-~g~~~~~-~~~Gel~v~~--~~~~~~y~~~~~~~~~-----~~ 114 (204)
++.++|+|+ +|++++. |+.|||++++ |+++.|||++++.+.. .+
T Consensus 423 E~~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~v~~~g~~Gel~i~g~~p~~~~gy~~~~~~~~~~~~~~~~ 502 (663)
T 1ry2_A 423 ESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYP 502 (663)
T ss_dssp TTCSCSEECCTTTCCCCCTTCCCEECTTCCEEEECSSSTTCEECSSCEEEEEESSCCTTSCCEETTCHHHHHHHHTSSST
T ss_pred cccCeeeccCCCCCcccCCCccccCcCCCeEEEEcCCCCCcCCCCCcceEEEEecCCCchhcccccChHHHHHhhhcCCC
Confidence 567899998 8999998 9999999999 5899999999987654 37
Q ss_pred CceeccceEEEecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCC---
Q psy13807 115 EWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGAS--- 191 (204)
Q Consensus 115 ~~~~TGD~~~~~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~--- 191 (204)
|||+|||++++|+||+++|+||+||+||++|++|+|.|||++|.++|+|.+++|++.+++..++.++|||++.++..
T Consensus 503 g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~~~a~Vv~~~~~~~~~ 582 (663)
T 1ry2_A 503 GYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWST 582 (663)
T ss_dssp TSEEEEEEEEECTTCCEEECSCTTSCBCSSSCCBCHHHHHHHHHSSTTEEEEEEECCCCCTTSCCCEEEEEEC-------
T ss_pred CEEEcCCEEEEcCCCCEEEEeecCCEEEECCEEcCHHHHHHHHHhCCCcceEEEEEEecCCCCeEEEEEEEEcCCCcccc
Confidence 89999999999999999999999999999999999999999999999999999999998888899999999987643
Q ss_pred C-C------HHHHHHHHhc
Q psy13807 192 L-T------QDDIKTYCKG 203 (204)
Q Consensus 192 ~-~------~~~l~~~l~~ 203 (204)
. + .++|+++|++
T Consensus 583 ~~~~~~~~l~~~l~~~l~~ 601 (663)
T 1ry2_A 583 ATDDELQDIKKHLVFTVRK 601 (663)
T ss_dssp -----CCSHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHH
Confidence 2 2 4677777664
No 17
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=100.00 E-value=9.8e-37 Score=257.78 Aligned_cols=193 Identities=27% Similarity=0.458 Sum_probs=148.6
Q ss_pred HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhCCc-----------
Q psy13807 2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGIK----------- 70 (204)
Q Consensus 2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g~~----------- 70 (204)
+++.++++++|+++++|+++..|++...... .+++++|.+++||+++++++.+++ +.+|..
T Consensus 259 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-------~~l~~lr~i~~gG~~l~~~~~~~~-~~~g~~~~~~YG~TE~~ 330 (541)
T 1v25_A 259 LVELFDGEGVTFTAGVPTVWLALADYLESTG-------HRLKTLRRLVVGGSAAPRSLIARF-ERMGVEVRQGYGLTETS 330 (541)
T ss_dssp HHHHHHHTTCCEEEECHHHHHHHHHHHHHHT-------CCCSSCCEEEECSSCCCHHHHHHH-HHTTCEEEEEEECGGGS
T ss_pred HHHHHHhcCeeEEecchHHHHHHHhhhhccC-------CcchhccEEEECCCCCCHHHHHHH-HHhCCceeecccccccc
Confidence 6789999999999999999999987654333 568899999999999999999999 565543
Q ss_pred --------------------------------ceEEEEECCCCCcCCC--CCeeEEEEEeCcccccccCCcccccC---C
Q psy13807 71 --------------------------------HLIVKVVDKKGNIVPM--GMCGEVCYRGYNVMLGYYGEENKILE---N 113 (204)
Q Consensus 71 --------------------------------~~~v~i~d~~g~~~~~--~~~Gel~v~~~~~~~~y~~~~~~~~~---~ 113 (204)
++.++++|++|++++. ++.|||+++||+++.|||++++.+.. .
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~g~~~~~~~~~~GEl~v~g~~v~~GY~~~p~~t~~~f~~ 410 (541)
T 1v25_A 331 PVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVADEEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTP 410 (541)
T ss_dssp SEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEECTTSCBCCSSSCCCEEEEEESTTSBSSCBTCHHHHHTTBCT
T ss_pred cceecccccccccccCccccccccCCCCCcCCCcEEEEECCCCCCCCCCCCcceEEEEeCcchhccccCChhhhhhhccC
Confidence 3468899999999985 36899999999999999999998876 4
Q ss_pred CCceeccceEEEecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCC
Q psy13807 114 DEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLT 193 (204)
Q Consensus 114 ~~~~~TGD~~~~~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~ 193 (204)
+|||+|||++++|+||+++|.||.||+||++|++|+|.+||++|.++|+|.+++|++.+++..++.++|+|++. +...+
T Consensus 411 ~g~~~TGDlg~~d~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~-~~~~~ 489 (541)
T 1v25_A 411 DGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPR-GEKPT 489 (541)
T ss_dssp TSCEEEEEEEEECTTCCEEEEEESSCEEEETTEEEEHHHHHCC----------CEEEEECSSSSEEEEECC---------
T ss_pred CCCeEcCCEEEEcCCceEEEeecccceeeeCCEEECHHHHHHHHHhCCCceEEEEEEecCCCcCceEEEEEEEC-CCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999988888999999886 44556
Q ss_pred HHHHHHHHhc
Q psy13807 194 QDDIKTYCKG 203 (204)
Q Consensus 194 ~~~l~~~l~~ 203 (204)
.++++++|++
T Consensus 490 ~~~l~~~~~~ 499 (541)
T 1v25_A 490 PEELNEHLLK 499 (541)
T ss_dssp ----------
T ss_pred HHHHHHHHHh
Confidence 6778777765
No 18
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=100.00 E-value=4.1e-36 Score=252.75 Aligned_cols=195 Identities=20% Similarity=0.196 Sum_probs=164.2
Q ss_pred HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHh-CCc----------
Q psy13807 2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTF-GIK---------- 70 (204)
Q Consensus 2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~-g~~---------- 70 (204)
+++.++++++|.+.++|+++..++....... ..++++|.+++||+++++++.+++.+.+ +..
T Consensus 230 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-------~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~ 302 (521)
T 3l8c_A 230 LFTTIAQLPVGIWTSTPSFADMAMLSDDFCQ-------AKMPALTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTEA 302 (521)
T ss_dssp HHHHHHHSCCSEEEECHHHHHHHHTSTTCST-------TTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGG
T ss_pred HHHHHHHcCCcEEEeCCCHHHHHhhhhcccc-------ccCccceEEEEecccCCHHHHHHHHHHCCCceEEeCcCccHH
Confidence 6788999999999999999998887765554 6789999999999999999999999887 333
Q ss_pred ---------------------------ceEEEEECCCCCcCCCCCeeEEEEEeCcccccccCCcccccC------CCCce
Q psy13807 71 ---------------------------HLIVKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILE------NDEWF 117 (204)
Q Consensus 71 ---------------------------~~~v~i~d~~g~~~~~~~~Gel~v~~~~~~~~y~~~~~~~~~------~~~~~ 117 (204)
++.++++|++|++++.|+.|||+++||+++.|||++++.+.. .++||
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~ 382 (521)
T 3l8c_A 303 TVALSAIEITREMVDNYTRLPIGYPKPDSPTYIIDEDGKELSSGEQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAY 382 (521)
T ss_dssp SSCSEEEEECHHHHHHCSSCEEEEECTTSCEEEECTTSCBCCTTCCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEE
T ss_pred hhhhceeecccccccCCCccccccccCCCEEEEECCCcCCCCCCCceEEEecccccChhhcCCchHhhccCcCCCCceee
Confidence 467889999999999999999999999999999999987764 46799
Q ss_pred eccceEEEecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCC-CCceEEEEEEeCCCCCCC---
Q psy13807 118 PSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDER-LGEVVVANIELKPGASLT--- 193 (204)
Q Consensus 118 ~TGD~~~~~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~-~~~~~~a~v~~~~~~~~~--- 193 (204)
+|||+|++|++|++++.||.||+||++|++|+|.+||++|.++|+|.+++|++.+++. .++.++|+|++.++....
T Consensus 383 ~TGDlg~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~~a~vv~~~~~~~~~~~ 462 (521)
T 3l8c_A 383 HTGDIGSLTEDNILLYGGRLDFQIKYAGYRIELEDVSQQLNQSPMVASAVAVPRYNKEHKVQNLLAYIVVKDGVKERFDR 462 (521)
T ss_dssp EEEEEEEECSSSCEEEEEEGGGBCC-----CBHHHHHHHHHTSTTEEEEEEECCCSSSCC---CEEEEEECTTSGGGCSS
T ss_pred eCCCEEEEeCCCeEEEeCcccceEeECCEEeCHHHHHHHHHcCCCcceEEEEEeecCCCCceEEEEEEEecCcccccccc
Confidence 9999999999999999999999999999999999999999999999999999987543 457899999998764321
Q ss_pred ----HHHHHHHHhc
Q psy13807 194 ----QDDIKTYCKG 203 (204)
Q Consensus 194 ----~~~l~~~l~~ 203 (204)
.++|+++|++
T Consensus 463 ~~~~~~~l~~~l~~ 476 (521)
T 3l8c_A 463 ELELTKAIKASVKD 476 (521)
T ss_dssp HHHHHHHHHHHSGG
T ss_pred chhhHHHHHHHHHh
Confidence 4677777765
No 19
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=100.00 E-value=4.6e-37 Score=261.27 Aligned_cols=193 Identities=21% Similarity=0.281 Sum_probs=111.6
Q ss_pred HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhC-Cc----------
Q psy13807 2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFG-IK---------- 70 (204)
Q Consensus 2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g-~~---------- 70 (204)
+++.|+++++|.+.++|++++.|++... ..+++||.+++||+++++++.+++.+.++ ..
T Consensus 295 ~~~~i~~~~vt~~~~~P~~~~~l~~~~~----------~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~YG~TE~ 364 (570)
T 4gr5_A 295 IGELVARHGVTMLQLSASLFNFLVDEVP----------EAFEGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAES 364 (570)
T ss_dssp HHHHHHHHTCCEEEEEHHHHHHHHHHCG----------GGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGG
T ss_pred HHHHHHHcCCcEEEecHHHHHHHHhhch----------hhCCCceEEEEecccCCHHHHHHHHHhCCCcEEEEeechhhh
Confidence 6789999999999999999999987532 35789999999999999999999988752 22
Q ss_pred --------------------------ceEEEEECCCCCcCCCCCeeEEEEEeCcccccccCCcccccC-----------C
Q psy13807 71 --------------------------HLIVKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILE-----------N 113 (204)
Q Consensus 71 --------------------------~~~v~i~d~~g~~~~~~~~Gel~v~~~~~~~~y~~~~~~~~~-----------~ 113 (204)
++.++|+|++|++++.|+.|||+++|++++.|||++++.+.. .
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d~~~~~~~~G~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~ 444 (570)
T 4gr5_A 365 MGFTTHHAVVAGDLSGTALPIGVPLAGKRAYVLDDDLKPAANGALGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGG 444 (570)
T ss_dssp CSCSEEEECCGGGTTSSSCCCBEECTTEEEEEECTTSCBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECTTCCSSC
T ss_pred eeeeeeeeecccccCCCccccceeeCCCEEEEECCCCCCCCCCCcEEEEEeecccchhcCCCchhhhcccccCCCCCCCC
Confidence 678999999999999999999999999999999999887654 2
Q ss_pred CCceeccceEEEecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCC-CCC
Q psy13807 114 DEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPG-ASL 192 (204)
Q Consensus 114 ~~~~~TGD~~~~~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~-~~~ 192 (204)
++||+|||++++|+||+++|.||+||+||++|++|+|.|||++|.++|+|.+++|++.+++..++.++|+|+..++ ...
T Consensus 445 ~~w~~TGDlg~~d~dG~l~~~GR~~d~Ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~~~~ 524 (570)
T 4gr5_A 445 ERMYRTGDLARRRADGVLEYVGRADDQVKIRGFRVEPGEVEARLVGHPAVRQAAVLAQDSRLGDKQLVAYVVAERADAPP 524 (570)
T ss_dssp CEEEEEEEEEEECTTSCEEEEEC---------------------------------------------------------
T ss_pred CEEEeCCCeEEECCCCeEEEEcccCCEEEECcEEeCHHHHHHHHhcCCCcceEEEEEeeCCCCCeEEEEEEEecCCCCCc
Confidence 4799999999999999999999999999999999999999999999999999999999888888899999998654 345
Q ss_pred CHHHHHHHHhcC
Q psy13807 193 TQDDIKTYCKGK 204 (204)
Q Consensus 193 ~~~~l~~~l~~~ 204 (204)
+.++|+++|+++
T Consensus 525 ~~~~l~~~l~~~ 536 (570)
T 4gr5_A 525 DAAELRRHVAEA 536 (570)
T ss_dssp ------------
T ss_pred CHHHHHHHHHhh
Confidence 677888887753
No 20
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=100.00 E-value=1.2e-35 Score=250.41 Aligned_cols=195 Identities=27% Similarity=0.418 Sum_probs=167.2
Q ss_pred HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhCCc-----------
Q psy13807 2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGIK----------- 70 (204)
Q Consensus 2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g~~----------- 70 (204)
+++.++++++|+++++|+++..+++...... ....++|.+++||+++++++.+++.+.+|+.
T Consensus 266 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-------~~~~~lr~~~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~ 338 (529)
T 2v7b_A 266 IFARLVEHRPTVFYGVPTLYANMLVSPNLPA-------RADVAIRICTSAGEALPREIGERFTAHFGCEILDGIGSTEML 338 (529)
T ss_dssp HHHHHHHSCCSEEEECHHHHHHHHTCTTCCC-------GGGCCCCEEEECSSCCCHHHHHHHHHHHSCCEEEEEECTTTS
T ss_pred HHHHHHHhCCEEEEecHHHHHHHHhCccccc-------ccCCceEEEEEcCCCCCHHHHHHHHHHhCCceeeeEchhhcC
Confidence 6789999999999999999999987654332 2134899999999999999999999987765
Q ss_pred ---------------------ceEEEEECCCCCcCCCCCeeEEEEEeCcccccccCCcccccC--CCCceeccceEEEec
Q psy13807 71 ---------------------HLIVKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILE--NDEWFPSGDFFILHE 127 (204)
Q Consensus 71 ---------------------~~~v~i~d~~g~~~~~~~~Gel~v~~~~~~~~y~~~~~~~~~--~~~~~~TGD~~~~~~ 127 (204)
++.++++|++|+++|.|+.|||+++|++++.|||++++.+.. .++||+|||++++++
T Consensus 339 ~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~g~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~~~~~~TGDl~~~~~ 418 (529)
T 2v7b_A 339 HIFLSNRAGAVEYGTTGRPVPGYEIELRDEAGHAVPDGEVGDLYIKGPSAAVMYWNNREKSRATFLGEWIRSGDKYCRLP 418 (529)
T ss_dssp SEEEECCTTCCCTTSCCEECTTCEEEEECTTSCBCCTTSCEEEEEECTTCCCCBTTCHHHHHHHEETTEEEEEEEEEECT
T ss_pred ceeeccccCCCccCCcccCCCCCEEEEECCCCCCCCCCCccEEEEecCCcccccCCChHHHHHhhhcCCcccCceEEECC
Confidence 678999999999999999999999999999999999987765 589999999999999
Q ss_pred CCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCC---CHHHHHHHHhcC
Q psy13807 128 NGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASL---TQDDIKTYCKGK 204 (204)
Q Consensus 128 ~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~---~~~~l~~~l~~~ 204 (204)
||++++.||.||+||++|++|+|.+||++|.++|+|.+++|++. ++..++.++++|++.++... ..++|+++|+++
T Consensus 419 ~G~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~vv~~-~~~~~~~~~a~vv~~~~~~~~~~~~~~l~~~l~~~ 497 (529)
T 2v7b_A 419 NGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQHDAVLEAAVVGV-DHGGLVKTRAFVVLKREFAPSEILAEELKAFVKDR 497 (529)
T ss_dssp TSCEEEEEEGGGCBC----CBCHHHHHHHHTTSTTEEEEEEEEE-EETTEEEEEEEEEECTTCCCCHHHHHHHHHHHHTT
T ss_pred CccEEEeCccCCeEEECCEEECHHHHHHHHHhCCCcceEEEEEe-cCCCceEEEEEEEecCCCCcchhHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999 55567789999998766432 235788887753
No 21
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=100.00 E-value=3.3e-36 Score=252.68 Aligned_cols=197 Identities=28% Similarity=0.463 Sum_probs=168.3
Q ss_pred HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhCCc-----------
Q psy13807 2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGIK----------- 70 (204)
Q Consensus 2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g~~----------- 70 (204)
+++.+ ++++|.++++|+++..+++...... .....++++|.+++||+++++++.+++.+.+|..
T Consensus 236 ~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~~----~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~ 310 (505)
T 3nyq_A 236 AAREL-NDGATMLFGVPTMYHRIAETLPADP----ELAKALAGARLLVSGSAALPVHDHERIAAATGRRVIERYGMTETL 310 (505)
T ss_dssp HHHHH-TTTCCEEEECHHHHHHHHHHGGGCH----HHHHHHHHCSEEEECSSCCCHHHHHHHHHHHSCCCEEEEEETTTE
T ss_pred HHHHH-hhCCeEEEehHHHHHHHHHhhhcCc----hhhcccccceEEEECCCCCCHHHHHHHHHhcCCeeecccchhhcc
Confidence 45667 7899999999999999987532211 0113567899999999999999999999987765
Q ss_pred ---------------------ceEEEEECCCCCcCCC---CCeeEEEEEeCcccccccCCcccccC---CCCceeccceE
Q psy13807 71 ---------------------HLIVKVVDKKGNIVPM---GMCGEVCYRGYNVMLGYYGEENKILE---NDEWFPSGDFF 123 (204)
Q Consensus 71 ---------------------~~~v~i~d~~g~~~~~---~~~Gel~v~~~~~~~~y~~~~~~~~~---~~~~~~TGD~~ 123 (204)
++.++++|++|++++. |+.|||+++|++++.|||++++.+.. .++||+|||++
T Consensus 311 ~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~~g~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~y~TGDl~ 390 (505)
T 3nyq_A 311 MNTSVRADGEPRAGTVGVPLPGVELRLVEEDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMA 390 (505)
T ss_dssp EEEECCTTSCCCTTCCCEECTTCEEEEC-----CCCCCCSCCCEEEEEESTTSCCEETTCHHHHHHTBCTTSCEEEEEEE
T ss_pred cccccCCCCCCCCCCcccCCCCCEEEEECCCCCCcccCCCCceEEEEEecCchhhhhCCChhHhhhhhcCCCCCccCCeE
Confidence 7889999999998886 89999999999999999999988765 58999999999
Q ss_pred EEecCCeEEEEeec-cceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCC-CCCCCHHHHHHHH
Q psy13807 124 ILHENGYGQVVGRI-KDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKP-GASLTQDDIKTYC 201 (204)
Q Consensus 124 ~~~~~g~~~~~GR~-dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~-~~~~~~~~l~~~l 201 (204)
++++||+++|+||+ ||+||++|++|+|.|||++|.++|+|.+++|++.+++..++.++|+|++.+ +...+.++|+++|
T Consensus 391 ~~~~dG~l~~~GR~~d~~ik~~G~~v~~~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~l~a~vv~~~~~~~~~~~~l~~~l 470 (505)
T 3nyq_A 391 VRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALLEHPEVREAAVTGEPDPDLGERIVAWIVPADPAAPPALGTLADHV 470 (505)
T ss_dssp EECTTSCEEEEEESSCCCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSTTSCCCHHHHHHHH
T ss_pred EECCCccEEEeCCccCceEEeCCEEECHHHHHHHHHHCcCccEEEEEeeECCCCCcEEEEEEEECCCCCCCCHHHHHHHH
Confidence 99999999999998 599999999999999999999999999999999999888999999999976 4566788999988
Q ss_pred hc
Q psy13807 202 KG 203 (204)
Q Consensus 202 ~~ 203 (204)
++
T Consensus 471 ~~ 472 (505)
T 3nyq_A 471 AA 472 (505)
T ss_dssp HH
T ss_pred Hh
Confidence 75
No 22
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=100.00 E-value=1.6e-35 Score=251.45 Aligned_cols=187 Identities=22% Similarity=0.356 Sum_probs=166.2
Q ss_pred HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHH------hCCc-----
Q psy13807 2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDT------FGIK----- 70 (204)
Q Consensus 2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~------~g~~----- 70 (204)
+++.++++++|++.++|+++..+.. ..++++|.+++||+++++++.+++.+. ||.+
T Consensus 265 ~~~~i~~~~~t~~~~~P~~~~~l~~-------------~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~YG~TE~~~~ 331 (563)
T 1amu_A 265 FEQYINQKEITVITLPPTYVVHLDP-------------ERILSIQTLITAGSATSPSLVNKWKEKVTYINAYGPTETTIC 331 (563)
T ss_dssp HHHHHHHTTCCEEEECHHHHTTSCT-------------TTCCSCSEEEEESSCCCHHHHHHHTTTSEEEEEECCGGGSSC
T ss_pred HHHHHHHcCCcEEEeCHHHHHHHHh-------------cccccccEEEEEEecCCHHHHHHHHhCCeEEEEECcCHHhHh
Confidence 6788999999999999998876532 246789999999999999999998764 3333
Q ss_pred ----------------------ceEEEEECCCCCcCCCCCeeEEEEEeCcccccccCCcccccC---------CCCceec
Q psy13807 71 ----------------------HLIVKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILE---------NDEWFPS 119 (204)
Q Consensus 71 ----------------------~~~v~i~d~~g~~~~~~~~Gel~v~~~~~~~~y~~~~~~~~~---------~~~~~~T 119 (204)
++.++|+|++|++++.|+.|||+++|++++.|||++++.+.. .++||+|
T Consensus 332 ~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~g~~w~~T 411 (563)
T 1amu_A 332 ATTWVATKETIGHSVPIGAPIQNTQIYIVDENLQLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKT 411 (563)
T ss_dssp SEEEECCSSCCCSSCCCBEECTTEEEEEECTTSCBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEE
T ss_pred heeeecccccCCCCCcccceeCCCEEEEECCCcCCCCCCCcEEEEEechhhChhhCCCchhhhhhcccCCCCCCCEEEec
Confidence 678999999999999999999999999999999999986654 2469999
Q ss_pred cceEEEecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCCHHHHHH
Q psy13807 120 GDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKT 199 (204)
Q Consensus 120 GD~~~~~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~ 199 (204)
||+|++|+||+++|.||.||+||++|++|+|.+||++|.++|+|.+++|++.+++..++.++|+|+..+ ..+.++|++
T Consensus 412 GDlg~~d~dG~l~i~GR~~d~Ik~~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~--~~~~~~l~~ 489 (563)
T 1amu_A 412 GDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEK--HIPLEQLRQ 489 (563)
T ss_dssp EEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSCEEEEEEEEESS--CCCHHHHHH
T ss_pred CCEEEEcCCCeEEEeccccCEEEECCEEeCHHHHHHHHHhCCCcceEEEEEeecCCCCeEEEEEEEeCC--CCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998888889999999864 467889999
Q ss_pred HHhc
Q psy13807 200 YCKG 203 (204)
Q Consensus 200 ~l~~ 203 (204)
+|++
T Consensus 490 ~l~~ 493 (563)
T 1amu_A 490 FSSE 493 (563)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8875
No 23
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=100.00 E-value=1.9e-36 Score=271.19 Aligned_cols=196 Identities=28% Similarity=0.457 Sum_probs=119.4
Q ss_pred HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHh-CCc----------
Q psy13807 2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTF-GIK---------- 70 (204)
Q Consensus 2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~-g~~---------- 70 (204)
+++.++++++|++.++|+++..|++...... .++++||.+++||+++++++.+++.+.| +..
T Consensus 310 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-------~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~l~~~YG~TE~ 382 (979)
T 3tsy_A 310 LLELIQRCKVTVAPMVPPIVLAIAKSSETEK-------YDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEA 382 (979)
T ss_dssp HHHHHHHHTCCEEEECHHHHHHHHHCGGGGT-------SCCTTCCEEEESSCCCCSSHHHHHHHHCTTCEEEECEECGGG
T ss_pred HHHHHHHhCCeEEEcHHHHHHHHHhCccccC-------CCccceEEEEEcCCCCCHHHHHHHHHHCCCCeEEeeechhhh
Confidence 6789999999999999999999998776555 6789999999999999999999999887 333
Q ss_pred ---------------------------ceEEEEECCC-CCcCCCCCeeEEEEEeCcccccccCCcccccC---CCCceec
Q psy13807 71 ---------------------------HLIVKVVDKK-GNIVPMGMCGEVCYRGYNVMLGYYGEENKILE---NDEWFPS 119 (204)
Q Consensus 71 ---------------------------~~~v~i~d~~-g~~~~~~~~Gel~v~~~~~~~~y~~~~~~~~~---~~~~~~T 119 (204)
++.++++|++ |++++.|+.|||+++|++++.|||++|+.+.. .++||+|
T Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~GEl~i~g~~v~~GY~~~p~~t~~~f~~~g~~~T 462 (979)
T 3tsy_A 383 GPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQPGEICIRGHQIMKGYLNNPAATAETIDKDGWLHT 462 (979)
T ss_dssp CSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTSCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEE
T ss_pred hHHHHhCCCCCCCccccCCCCcCcccCCcEEEEEeCCCCCCCCCCCccEEEEECCCccccccCChhhhhhhccCCCcEEc
Confidence 5678999955 99999999999999999999999999988876 6899999
Q ss_pred cceEEEecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCCHHHHHH
Q psy13807 120 GDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKT 199 (204)
Q Consensus 120 GD~~~~~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~ 199 (204)
||++++++||+++|+||.||+||++|++|+|.|||++|.++|+|.+++|++.+++..++.++++|+..++...+.+++++
T Consensus 463 GDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~ 542 (979)
T 3tsy_A 463 GDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIGHPDITDVAVVAMKEEAAGEVPVAFVVKSKDSELSEDDVKQ 542 (979)
T ss_dssp EEEEEECTTSCEEEEEESCC------------------------------------------------------------
T ss_pred CCEEEEcCCceEEEecCCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEecccCCCcEEEEEEEECCCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999888889999999988777778888888
Q ss_pred HHhcC
Q psy13807 200 YCKGK 204 (204)
Q Consensus 200 ~l~~~ 204 (204)
+|+++
T Consensus 543 ~l~~~ 547 (979)
T 3tsy_A 543 FVSKQ 547 (979)
T ss_dssp -----
T ss_pred HHHHh
Confidence 88753
No 24
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=100.00 E-value=6.7e-34 Score=238.25 Aligned_cols=184 Identities=26% Similarity=0.367 Sum_probs=163.8
Q ss_pred HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhCCc-----------
Q psy13807 2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGIK----------- 70 (204)
Q Consensus 2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g~~----------- 70 (204)
+++.++++++|.+.++|++++.|++...... .++|.+++||+++++++.+++.+ ++.+
T Consensus 243 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~----------~~lr~i~~gG~~l~~~~~~~~~~-~~~~~~~~YG~TE~~ 311 (501)
T 3ipl_A 243 ILTMIKNERITHISLVPQTLNWLMQQGLHEP----------YNLQKILLGGAKLSATMIETALQ-YNLPIYNSFGMTETC 311 (501)
T ss_dssp HHHHHHHSCCCEEEECHHHHHHHHHHTCCSC----------TTCCEEEECSSCCCHHHHHHHHH-TTCCEEEEEEEGGGT
T ss_pred HHHHHHHcCCcEEEchHHHHHHHHhcCCCCc----------CcccEEEEeCCCCCHHHHHHHHH-hCCCEeccccccccc
Confidence 6889999999999999999999988754332 38999999999999999999986 4544
Q ss_pred -----------------------ceEEEEECCCCCcCCCCCeeEEEEEeCcccccccCCcccccC-CCCceeccceEEEe
Q psy13807 71 -----------------------HLIVKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILE-NDEWFPSGDFFILH 126 (204)
Q Consensus 71 -----------------------~~~v~i~d~~g~~~~~~~~Gel~v~~~~~~~~y~~~~~~~~~-~~~~~~TGD~~~~~ 126 (204)
++.++++|++ .++.|||+++|++++.|||++++.+.. .+|||+|||+++++
T Consensus 312 ~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~-----~~~~GEl~v~g~~~~~gY~~~~~~t~~~~~g~~~TGDl~~~~ 386 (501)
T 3ipl_A 312 SQFLTATPEMLHARPDTVGMPSANVDVKIKNPN-----KEGHGELMIKGANVMNGYLYPTDLTGTFENGYFNTGDIAEID 386 (501)
T ss_dssp EEEEEECHHHHHHCTTCCBEECTTCEEEEESCC-----SSCCEEEEEESTTSCSCCSBSTTCCCSEETTEEEEEEEEEEC
T ss_pred cceeecCccccccCCCCCCCCCCCcEEEEecCC-----CCCccEEEEeccchhhhhCcChhhcchhcCCceecCCEEEEc
Confidence 5677777765 466799999999999999999988876 78999999999999
Q ss_pred cCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCCHHHHHHHHhc
Q psy13807 127 ENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCKG 203 (204)
Q Consensus 127 ~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~ 203 (204)
+||++++.||.||+||++|++|+|.+||++|.++|+|.+++|++.+++..++.++++++.. ...+.++|+++|++
T Consensus 387 ~~G~l~~~GR~dd~ik~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~g~~~~a~v~~~--~~~~~~~l~~~l~~ 461 (501)
T 3ipl_A 387 HEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSE--SDISKAQLIAYLSK 461 (501)
T ss_dssp TTSCEEEEEECCCCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEES--SCCCHHHHHHHHHH
T ss_pred CCCeEEEEccccceEEECCEEECHHHHHHHHHhCCCccEEEEEEEecccCCceEEEEEEeC--CCCCHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999988889999999874 35788899998875
No 25
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=100.00 E-value=1.2e-35 Score=249.34 Aligned_cols=191 Identities=29% Similarity=0.482 Sum_probs=111.9
Q ss_pred HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHh-CCc----------
Q psy13807 2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTF-GIK---------- 70 (204)
Q Consensus 2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~-g~~---------- 70 (204)
+++.++++++|++.++|+++..+++... . ..++++|.++++|++ ++.+++.+.+ +..
T Consensus 240 ~~~~i~~~~~t~~~~~p~~~~~l~~~~~--~-------~~l~~lr~~~~~g~~---~~~~~~~~~~~~~~~~~~YG~TE~ 307 (509)
T 3ivr_A 240 AARDIEAHKVTVMAEFAPMLGNILDQAA--P-------AQLASLRAVTGLDTP---ETIERFEATCPNATFWATFGQSET 307 (509)
T ss_dssp HHHHHHHHTCCEEEEETTHHHHHHHHCC--G-------GGGTTCCEEEEECCH---HHHHHHHHHCTTCEEEEEEEEGGG
T ss_pred HHHHHHHHCCcEEEecHHHHHHHHhccc--c-------cchhhhheecccCCh---HHHHHHHHhcCCCeEEcccCcccc
Confidence 6789999999999999999999988762 2 568899999999986 8888888887 443
Q ss_pred ---------------------ceEEEEECCCCCcCCCCCeeEEEEEeCcccccccCCcccccC--CCCceeccceEEEec
Q psy13807 71 ---------------------HLIVKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILE--NDEWFPSGDFFILHE 127 (204)
Q Consensus 71 ---------------------~~~v~i~d~~g~~~~~~~~Gel~v~~~~~~~~y~~~~~~~~~--~~~~~~TGD~~~~~~ 127 (204)
++.++++|++|++++.|+.|||+++|++++.|||++++.+.. .++||+|||++++++
T Consensus 308 ~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~~g~~~TGDl~~~~~ 387 (509)
T 3ivr_A 308 SGLSTFAPYRDRPKSAGRPLFWRTVAVVDAEDRPLPPGEVGEIVLRGPTVFKGYWNNAAATQHAFRNGWHHTGDMGRFDA 387 (509)
T ss_dssp TEEEEEEEGGGSTTSCCEECTTCEEEEECTTSCBCCTTCCEEEEEESTTSCCEETTCHHHHHHHTGGGSEEEEEEEEECT
T ss_pred ccccccCccccCCCcccccCCCcEEEEECCCCCCCCCCCceEEEEecCCccccccCCHHHhHHHhhcCCcccccEEEECC
Confidence 678899999999999999999999999999999999988876 689999999999999
Q ss_pred CCeEEEEeec--cceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCCHHHHHHHHhcC
Q psy13807 128 NGYGQVVGRI--KDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCKGK 204 (204)
Q Consensus 128 ~g~~~~~GR~--dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~~ 204 (204)
||++++.||. +|+||++|++|+|.+||++|.++|+|.+++|++.+++..++.++++|++.++...+.++|+++|+++
T Consensus 388 dG~l~~~GR~d~~d~ik~~G~~v~p~eiE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~~ 466 (509)
T 3ivr_A 388 DGYLFYAGRAPEKELIKTGGENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVCVCKPGESIAADALAEFVASL 466 (509)
T ss_dssp TSCEEEEEEC---------------------------------------------------------------------
T ss_pred CceEEEeCCCCcceeEEECCEEECHHHHHHHHHhCCCceeEEEEeccccccCcEEEEEEEeCCCCCCCHHHHHHHHHhh
Confidence 9999999999 9999999999999999999999999999999999998888999999999887777888888887753
No 26
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=100.00 E-value=1.6e-33 Score=258.35 Aligned_cols=190 Identities=24% Similarity=0.343 Sum_probs=170.1
Q ss_pred HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhCCc-----------
Q psy13807 2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGIK----------- 70 (204)
Q Consensus 2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g~~----------- 70 (204)
+++.|+++++|+++++|++++.+..... ..++++|.+++||+++++++.+++.+.++..
T Consensus 689 l~~~i~~~~vt~~~~~p~~~~~l~~~~~----------~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~ 758 (1304)
T 2vsq_A 689 LTDLILQENVNVMFATTALFNLLTDAGE----------DWMKGLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEG 758 (1304)
T ss_dssp HHHHHHHHTCCEEEEEHHHHHHHHHHCS----------HHHHTCSEEEEESSCCCHHHHHHHHHHHCTTCEEEEECCGGG
T ss_pred HHHHHHHcCCcEEEccHHHHHHHHhhch----------hcCCCccEEEEecCCCCHHHHHHHHHhCCCCEEEEeEChhHH
Confidence 6789999999999999999999876521 2467899999999999999999998876521
Q ss_pred --------------------------ceEEEEECCCCCcCCCCCeeEEEEEeCcccccccCCcccccC---------CCC
Q psy13807 71 --------------------------HLIVKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILE---------NDE 115 (204)
Q Consensus 71 --------------------------~~~v~i~d~~g~~~~~~~~Gel~v~~~~~~~~y~~~~~~~~~---------~~~ 115 (204)
++.++|+|++++++|.|..|||+++|+++++||+++|+.++. .++
T Consensus 759 ~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~p~G~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~p~~~g~~ 838 (1304)
T 2vsq_A 759 TVFATAHVVHDLPDSISSLPIGKPISNASVYILNEQSQLQPFGAVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGET 838 (1304)
T ss_dssp SSCSEEEECCCCCSSCSSCCCBEECTTEEEEEECTTSCBCCTTCCEEEEEEETTCCCCBTTCHHHHHHHEEECTTSTTCE
T ss_pred hHHheeeeccCccccCCCCCCceeeCCCEEEEECCCcCCCCCCCceEEEEeccccCccccCCcccchhhhccCCCCCCCe
Confidence 678899999999999999999999999999999999987754 256
Q ss_pred ceeccceEEEecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCCHH
Q psy13807 116 WFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQD 195 (204)
Q Consensus 116 ~~~TGD~~~~~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~ 195 (204)
||+|||++++++||.++|+||+||+||++|+||.|.|||++|.++|+|.+++|++.+++..+..++|+|+..+ ..+.+
T Consensus 839 ~yrTGDl~~~~~dG~l~~~GR~d~qvki~G~rie~~eIE~~l~~~p~V~~a~V~~~~~~~~~~~l~a~vv~~~--~~~~~ 916 (1304)
T 2vsq_A 839 LYRTGDLARWLPDGTIEYAGRIDDQVKIRGHRIELEEIEKQLQEYPGVKDAVVVADRHESGDASINAYLVNRT--QLSAE 916 (1304)
T ss_dssp EEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHHHSSSCCEEEEEEECCSSSCCEEEEEEECSS--SSCHH
T ss_pred eEecCCeEEEcCCCeEEEEcCCCCEEEECCEeeCHHHHHHHHHhCCCCceEEEEEEecCCCCEEEEEEEeCCC--CCCHH
Confidence 9999999999999999999999999999999999999999999999999999999988878889999999764 56788
Q ss_pred HHHHHHhc
Q psy13807 196 DIKTYCKG 203 (204)
Q Consensus 196 ~l~~~l~~ 203 (204)
+++++|++
T Consensus 917 ~l~~~l~~ 924 (1304)
T 2vsq_A 917 DVKAHLKK 924 (1304)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 89988875
No 27
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=100.00 E-value=1.6e-34 Score=245.10 Aligned_cols=192 Identities=15% Similarity=0.195 Sum_probs=109.1
Q ss_pred HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhCCc-----------
Q psy13807 2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGIK----------- 70 (204)
Q Consensus 2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g~~----------- 70 (204)
+++.++++++|++.++|++++.+.... .++++||.+++||+++++++.+++.+.++..
T Consensus 264 ~~~~i~~~~~t~~~~~P~~l~~~~~~~-----------~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~ 332 (562)
T 3ite_A 264 LPRTFRELGVTHAGIVPSLLDQTGLVP-----------EDAPHLVYLGVGGEKMTPRTQQIWSSSDRVALVNVYGPTEVT 332 (562)
T ss_dssp HHHHHHHTTCCEEEECHHHHHHHTCCG-----------GGSTTCCEEEEESSCCCHHHHHHHTTCSSCEEEEEECCGGGC
T ss_pred HHHHHHHcCCCEEEcCHHHHhhcccCc-----------cccCceEEEEEecCCCCHHHHHHHhhCCCcEEEEeeccchhe
Confidence 578899999999999999888764322 4678999999999999999999998765543
Q ss_pred ----------------------ceEEEEECCC-CCcCCCCCeeEEEEEeCcccccccCCcccccC--CC--CceeccceE
Q psy13807 71 ----------------------HLIVKVVDKK-GNIVPMGMCGEVCYRGYNVMLGYYGEENKILE--ND--EWFPSGDFF 123 (204)
Q Consensus 71 ----------------------~~~v~i~d~~-g~~~~~~~~Gel~v~~~~~~~~y~~~~~~~~~--~~--~~~~TGD~~ 123 (204)
++.++++|++ +.+++.|+.|||+++|++++.|||++++.+.. .+ +||+|||++
T Consensus 333 ~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~g~~w~~TGDlg 412 (562)
T 3ite_A 333 IGCSAGRILPDSDTRCIGHPLGDSVAHVLAPGSNEHVKKGMAGELVIEGSLVANGYLNRPDAKGFCDINGRKMYRTGDIV 412 (562)
T ss_dssp SCSEEEECCTTSCTTEEEEECTTCEEEEECTTSSCBCCTTSCEEEEEESTTSCCEESSCTTCCSEEEETTEEEEEEEEEE
T ss_pred eeeeeeeecCCCCCccccccCCCCeEEEEeCCCCCCCCCCCceEEEEeccccchhhCCCccccccccCCCCEEEecCCEE
Confidence 5678899865 78899999999999999999999999987765 34 499999999
Q ss_pred EEecCCeEEEEeeccceEEeCceeeChHHHHHHHhcC-CCcceEEEEeeeCCCCCceEEEEEEeCCCCCCC---------
Q psy13807 124 ILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTH-PDVVEAQVYGVPDERLGEVVVANIELKPGASLT--------- 193 (204)
Q Consensus 124 ~~~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~-~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~--------- 193 (204)
++|+||+++|.||.||+||++|++|+|.|||++|.++ +.+.+++|++.+++..++..+++++..++....
T Consensus 413 ~~d~dG~l~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 492 (562)
T 3ite_A 413 RMDADSSILFLGRKDEQVKVRGQRLELGEVSEVIRSLSPTDIDVVTLLLNHPGTSKQFLVSFVASSGAAVRGELRWINEN 492 (562)
T ss_dssp EECTTSCEEEEEEC------------------------------------------------------------------
T ss_pred EEcCCCeEEEEccccCEEeECcEEECHHHHHHHHHhcCCCceeEEEEEecCCCCcceEEEEEEecccccccccccccccc
Confidence 9999999999999999999999999999999999998 888899999888877666655555554333222
Q ss_pred ----HHHHHHHHhcC
Q psy13807 194 ----QDDIKTYCKGK 204 (204)
Q Consensus 194 ----~~~l~~~l~~~ 204 (204)
.++|+++|+++
T Consensus 493 ~~~~~~~l~~~~~~~ 507 (562)
T 3ite_A 493 YKEINNSLRQACEQT 507 (562)
T ss_dssp ---------------
T ss_pred hhhHHHHHHHHHHhh
Confidence 24677777653
No 28
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=100.00 E-value=5.2e-33 Score=238.34 Aligned_cols=174 Identities=14% Similarity=0.171 Sum_probs=151.2
Q ss_pred HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHh-CCc----------
Q psy13807 2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTF-GIK---------- 70 (204)
Q Consensus 2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~-g~~---------- 70 (204)
+++.|+++++|.+.++|++++.+++... ..+++||.+++||+++++++.+++.+.+ +..
T Consensus 245 ~~~~i~~~~vt~~~~~Ps~~~~l~~~~~----------~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~ 314 (620)
T 4dg8_A 245 LRQLIGERGADSAWLTASLFNTLVDLDP----------DCLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTEN 314 (620)
T ss_dssp HHHHHHTTCCCEEEEEHHHHHHHHHHCG----------GGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGG
T ss_pred HHHHHHHhCCcEEEccHHHHHHHHhcCh----------hhCCCccEEEEEeCcCCHHHHHHHHHhCCCeEEEeeEchhhh
Confidence 6789999999999999999999886421 4578999999999999998888887664 222
Q ss_pred --------------------------ceEEEEECCCCCc-CCCCCeeEEEEEeCcccccccCCcccccC---C-------
Q psy13807 71 --------------------------HLIVKVVDKKGNI-VPMGMCGEVCYRGYNVMLGYYGEENKILE---N------- 113 (204)
Q Consensus 71 --------------------------~~~v~i~d~~g~~-~~~~~~Gel~v~~~~~~~~y~~~~~~~~~---~------- 113 (204)
++.++++|+++.+ +|.|+.|||+++|++++.|||++++.+.. .
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~~~~g~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~p~~~~~ 394 (620)
T 4dg8_A 315 TTFTCCHVVTDDDLEEDDIPIGKAIAGTAVLLLDEHGQEIAEPDRAGEIVAFGAGLAQGYRNDAARTRASFVELPYRGRL 394 (620)
T ss_dssp CSCSEEEECCTGGGGSSSCCCBEECTTEEEEEECTTSCBCCSSSCCEEEEEEETTCCSEETTCHHHHHHHEEEEEETTEE
T ss_pred hhheEEEeccccccCCCCCCceecccCcEEEEECccCCCCCCCCCceEEEEeccccccccCCChhhhhhhhccCCCCCCC
Confidence 6789999999887 78999999999999999999999988765 1
Q ss_pred CCceeccceEEEecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEe
Q psy13807 114 DEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIEL 186 (204)
Q Consensus 114 ~~~~~TGD~~~~~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~ 186 (204)
.+||+|||++++++||+++|+||.||+||++|++|+|.|||++|.++|+|.+++|++.+++..++ ++++++.
T Consensus 395 ~~~yrTGDl~~~~~dG~l~~~GR~dd~Ik~~G~ri~~~eIE~~l~~~p~V~~a~Vv~~~~~~~~~-lv~~~~~ 466 (620)
T 4dg8_A 395 LRAYRTGDRARYDEQGRLRFIGRGDGQVKLNGYRLDLPALEQRFRRQPGILDCALLVRERNGVKQ-LLCAWTG 466 (620)
T ss_dssp EEEEEEEEEEEECTTSCEEEEECSSSEEEETTEEEEHHHHHHHHHTSTTEEEEEEEEEEETTEEE-EEEEEEE
T ss_pred ceEEeCCCEEEECCCCeEEEEccCCCEEEECCEEcCHHHHHHHHHhCCCccEEEEEEEeCCCceE-EEEEEec
Confidence 17999999999999999999999999999999999999999999999999999999998774444 4444443
No 29
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=100.00 E-value=5.3e-33 Score=236.10 Aligned_cols=194 Identities=23% Similarity=0.369 Sum_probs=160.1
Q ss_pred HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhC------Cc-----
Q psy13807 2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFG------IK----- 70 (204)
Q Consensus 2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g------~~----- 70 (204)
+++.++++++|+++++|++++.+.+....... ...+++++|.+++||+++++++.+++.+.|+ ..
T Consensus 262 ~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~----~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~Y 337 (576)
T 3gqw_A 262 WLKLISKNRGTVSVAPPFGYELCQRRVNEKDL----AELDLSCWRVAGIGAEPISAEQLHQFAECFRQVNFDNKTFMPCY 337 (576)
T ss_dssp HHHHHHHTTCCEEEECHHHHHHHHHSCCHHHH----TTCCCTTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEE
T ss_pred HHHHHHHhCCeEEEcCHHHHHHHHHHhccccc----ccCChhhhHhhhccCccCCHHHHHHHHHHHhhcCCCcccccccC
Confidence 67899999999999999999988765432110 0156899999999999999999999998762 11
Q ss_pred -------------------------------------------------------ceEEEEECCCCCcCCCCCeeEEEEE
Q psy13807 71 -------------------------------------------------------HLIVKVVDKKGNIVPMGMCGEVCYR 95 (204)
Q Consensus 71 -------------------------------------------------------~~~v~i~d~~g~~~~~~~~Gel~v~ 95 (204)
++.++++|++|++++.|+.|||+++
T Consensus 338 G~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~g~~~~~g~~GEl~v~ 417 (576)
T 3gqw_A 338 GLAENALAVSFSDEASGVVVNEVDRDILEYQGKAVAPGAETRAVSTFVNCGKALPEHGIEIRNEAGMPVAERVVGHICIS 417 (576)
T ss_dssp ECGGGSSEEEECCTTCCCCEEEEEHHHHHHHCBCCCCCTTCCCEEEEEBCCEECTTCEEEEECTTSCBCCTTBCEEEEEE
T ss_pred CcccccceeecccccCCccccccchhhhcccCcccccCccccCccceeecCCcCCCCeEEEECCCCCCCCCCCeEEEEEe
Confidence 3468899999999999999999999
Q ss_pred eCcccccccCCcccccC--CCCceeccceEEEecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeC
Q psy13807 96 GYNVMLGYYGEENKILE--NDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPD 173 (204)
Q Consensus 96 ~~~~~~~y~~~~~~~~~--~~~~~~TGD~~~~~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~ 173 (204)
|++++.|||++++.+.. .+|||+|||++++ +||+++|+||.||+||++|++|+|.+||++|.++|+|.+++|++...
T Consensus 418 g~~~~~gY~~~~~~~~~~~~~g~~~TGDl~~~-~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~vv~~~~ 496 (576)
T 3gqw_A 418 GPSLMSGYFGDQVSQDEIAATGWLDTGDLGYL-LDGYLYVTGRIKDLIIIRGRNIWPQDIEYIAEQEPEIHSGDAIAFVT 496 (576)
T ss_dssp STTSCCCBTTCHHHHHHHHHHSCEEEEEEEEE-ETTEEEEEEETTTCEEETTEEECHHHHHHHHTTSSSCCTTSEEEEEC
T ss_pred CccccccccCCccccccccCCCeeeccceEEE-ECCEEEEEecCcceEEECCEEECHHHHHHHHHhCcccccccEEEEEc
Confidence 99999999999877665 6899999999999 79999999999999999999999999999999999999998888877
Q ss_pred CCCCceEEEEEEeCCCCCCCHHHHHHHHh
Q psy13807 174 ERLGEVVVANIELKPGASLTQDDIKTYCK 202 (204)
Q Consensus 174 ~~~~~~~~a~v~~~~~~~~~~~~l~~~l~ 202 (204)
+.. ...++++...+.....+++++.|+
T Consensus 497 ~~~--~~~~~~~~~~~~~~~~~~l~~~l~ 523 (576)
T 3gqw_A 497 AQE--KIILQIQCRISDEERRGQLIHALA 523 (576)
T ss_dssp TTS--CEEEEEECCCCCHHHHHHHHHHHH
T ss_pred CCc--cEEEEEEEecCchhHHHHHHHHHH
Confidence 633 445555554443334455555554
No 30
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=100.00 E-value=3.7e-33 Score=237.81 Aligned_cols=196 Identities=23% Similarity=0.298 Sum_probs=162.7
Q ss_pred HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhCC------c-----
Q psy13807 2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGI------K----- 70 (204)
Q Consensus 2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g~------~----- 70 (204)
+++.|+++++|.+.++|+++..+++....... ...++++||.+++||+++++++.+++.+.|+. .
T Consensus 252 ~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~----~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~~~~~Y 327 (590)
T 3kxw_A 252 WLKHITKYKATISGSPNFAYDYCVKRIREEKK----EGLDLSSWVTAFNGAEPVREETMEHFYQAFKEFGFRKEAFYPCY 327 (590)
T ss_dssp HHHHHHHHTCSEEEECTHHHHHHHHHCCGGGG----TTCCCTTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEE
T ss_pred HHHHHHHhCCeeecCChhHHHHHHHHhhhhhc----cCCCchhhHHHhhCCCCCCHHHHHHHHHHHHHcCCCcccccccc
Confidence 67899999999999999999998876432110 01578999999999999999999999988731 1
Q ss_pred ----------------------------------------------------ceEEEEECCC-CCcCCCCCeeEEEEEeC
Q psy13807 71 ----------------------------------------------------HLIVKVVDKK-GNIVPMGMCGEVCYRGY 97 (204)
Q Consensus 71 ----------------------------------------------------~~~v~i~d~~-g~~~~~~~~Gel~v~~~ 97 (204)
...++|+|++ +.+++.|+.|||+++||
T Consensus 328 G~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~v~i~d~~~~~~~~~g~~GEl~v~g~ 407 (590)
T 3kxw_A 328 GLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQEVKIIDPDTLIPCDFDQVGEIWVQSN 407 (590)
T ss_dssp ECGGGSSEEEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSEEEEECTTTCCBCCTTBCEEEEEEST
T ss_pred ccccccceeecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCCeEEEcCCCCcCCCCCCEEEEEEeCC
Confidence 0126788887 89999999999999999
Q ss_pred cccccccCCcccccC--C-------CC--ceeccceEEEecCCeEEEEeeccceEEeCceeeChHHHHHHH-hcCCCcc-
Q psy13807 98 NVMLGYYGEENKILE--N-------DE--WFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVL-QTHPDVV- 164 (204)
Q Consensus 98 ~~~~~y~~~~~~~~~--~-------~~--~~~TGD~~~~~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l-~~~~~V~- 164 (204)
+++.|||++++.+.. . +| ||+|||++++| +|+++|.||.||+||++|++|+|.|||++| ..+|+|.
T Consensus 408 ~v~~GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d-dG~l~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~v~~ 486 (590)
T 3kxw_A 408 SVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-ENELYVTGRIKDLIIIYGKNHYPQDIEFSLMHSPLHHVL 486 (590)
T ss_dssp TSCCCBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEE-TTEEEEEEESSCHHHHHHHTTHHHHHHHHHHHSGGGGGE
T ss_pred cccccccCChhHHHHHHhccccCCCCCCcEEecCcEEEEE-CCEEEEEcCccceEEECCEecCHHHHHHHHHhcCccccC
Confidence 999999999987754 1 24 99999999999 999999999999999999999999999998 7889998
Q ss_pred -eEEEEeeeCCCCCceEEEEEEeCCCC--CCCHHHHHHHHhc
Q psy13807 165 -EAQVYGVPDERLGEVVVANIELKPGA--SLTQDDIKTYCKG 203 (204)
Q Consensus 165 -~~~v~~~~~~~~~~~~~a~v~~~~~~--~~~~~~l~~~l~~ 203 (204)
+++|++++++. ++.+++++++.++. ..+.++++++|++
T Consensus 487 ~~~~v~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~l~~~l~~ 527 (590)
T 3kxw_A 487 GKCAAFVIQEEH-EYKLTVMCEVKNRFMDDVAQDNLFNEIFE 527 (590)
T ss_dssp EEEEEEEEEETT-EEEEEEEEEESCTTCCHHHHHHHHHHHHH
T ss_pred ccEEEEEecCCC-CceEEEEEEeccccccchhHHHHHHHHHH
Confidence 89999998775 67888888887653 3355667766654
No 31
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=99.98 E-value=3.8e-31 Score=218.11 Aligned_cols=186 Identities=19% Similarity=0.257 Sum_probs=158.0
Q ss_pred HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhCCc-----------
Q psy13807 2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGIK----------- 70 (204)
Q Consensus 2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g~~----------- 70 (204)
+++.|+++++|+++++|+++..|++....... ...++++|.+++||+++++++.+++.+.||+.
T Consensus 170 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~-----~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~ 244 (436)
T 3qov_A 170 QIKFISDFKTTALHAIPSYAIRLAEVFQEEGI-----DPRETTLKTLVIGAEPHTDEQRRKIERMLNVKAYNSFGMTEMN 244 (436)
T ss_dssp HHHHHHHHTCCEEECCHHHHHHHHHHHHHTTC-----CTTSSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEEGGGT
T ss_pred HHHHHHHHCCCEEEECHHHHHHHHHHHHHcCC-----CcccCCccEEEEeCCcCCHHHHHHHHHHhCccEEecCcchhhc
Confidence 67899999999999999999999887543330 02478999999999999999999999998765
Q ss_pred -------------------ceEEEEEC-CCCCcCCCCCeeEEEEEeCcccccccCCcccccCCCCceeccceEEEecCC-
Q psy13807 71 -------------------HLIVKVVD-KKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILENDEWFPSGDFFILHENG- 129 (204)
Q Consensus 71 -------------------~~~v~i~d-~~g~~~~~~~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~~TGD~~~~~~~g- 129 (204)
++.++++| ++|++++.|+.|||++++++... ...+||+|||+++++++|
T Consensus 245 ~~~~~~~~~~~~g~~~~~~~~~v~i~d~~~g~~~~~g~~Gel~v~~~~~~~----------~~~~~y~TGDl~~~~~~gc 314 (436)
T 3qov_A 245 GPGVAFECQEQNGMHFWEDCYLVEIIDPETGEPVPEGEIGELVLTTLDREM----------MPLIRYRTRDLTRILPGKC 314 (436)
T ss_dssp EEEEEEECTTCSSEEECTTTEEEEEECTTTCSBCSTTCCEEEEEEESSCCS----------SCCCSEEEEEEECEECSCC
T ss_pred CCeeEEecCCCCeeEEccCceEEEEEECCCCCCCCCCCceEEEEeccCcCC----------ceEEEEEcCCEEEEcCCCC
Confidence 56788999 67999999999999999853211 146799999999999998
Q ss_pred -----e---EEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCC----HHHH
Q psy13807 130 -----Y---GQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLT----QDDI 197 (204)
Q Consensus 130 -----~---~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~----~~~l 197 (204)
+ +++.||.||+||++|.+|+|.+||++|.++|+|.+++|++.+++..++.++++|++. +...+ .+++
T Consensus 315 ~cG~~~~~il~i~GR~dd~ik~~G~~v~p~eiE~~l~~~p~v~~~~vv~~~~~~~~~~l~a~v~~~-~~~~~~~~~~~~l 393 (436)
T 3qov_A 315 PCGRTHLRIDRIKGRSDDMFIIKGVNIFPMQVEKILVQFPELGSNYLITLETVNNQDEMIVEVELS-DLSTDNYIELEKI 393 (436)
T ss_dssp TTCCCSCEECCCCCBSSSCEEETTEEECHHHHHHHHTTCTTEEEEEEEEEEEETTEEEEEEEEEEC-TTCCCCHHHHHHH
T ss_pred CCCCCccccCcccCccCCEEEECCEEECHHHHHHHHHhCcCcCCcEEEEEEcCCCCcEEEEEEEEc-CccccchhhHHHH
Confidence 5 699999999999999999999999999999999999999998877788999999998 55444 5666
Q ss_pred HHHHhc
Q psy13807 198 KTYCKG 203 (204)
Q Consensus 198 ~~~l~~ 203 (204)
++.|++
T Consensus 394 ~~~l~~ 399 (436)
T 3qov_A 394 RRDIIR 399 (436)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666654
No 32
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=99.97 E-value=3.5e-30 Score=212.38 Aligned_cols=187 Identities=19% Similarity=0.254 Sum_probs=153.9
Q ss_pred HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhCCc-----------
Q psy13807 2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGIK----------- 70 (204)
Q Consensus 2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g~~----------- 70 (204)
+++.|+++++|+++++|+++..|++........ ..++++|.+++||+++++++.+++.+.||+.
T Consensus 174 ~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~-----~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~ 248 (437)
T 2y27_A 174 QVQLIQDFRPDIIMVTPSYMLSIADEIERQGLD-----PVQSSLRIGIFGAEPWTNDMRVAIEQRMGIDAVDIYGLSEVM 248 (437)
T ss_dssp HHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCC-----GGGSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEETTTT
T ss_pred HHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCC-----cccCCeeEEEEcCccCCHHHHHHHHHHHCcCEEecCCchhhc
Confidence 678999999999999999999998765322200 1357899999999999999999999887765
Q ss_pred --------------------ceEEEEECCC-CCcCCCCCeeEEEEEeCcccccccCCcccccCCCCceeccceEEEec-C
Q psy13807 71 --------------------HLIVKVVDKK-GNIVPMGMCGEVCYRGYNVMLGYYGEENKILENDEWFPSGDFFILHE-N 128 (204)
Q Consensus 71 --------------------~~~v~i~d~~-g~~~~~~~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~~TGD~~~~~~-~ 128 (204)
++.++++|++ |+++|.|+.|||++++.+.. ....+||+|||++++++ +
T Consensus 249 g~~~~~~~~~~~~g~~~~~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~t~~----------~~~~~~y~TGDl~~~~~~~ 318 (437)
T 2y27_A 249 GPGVASECVETKDGPTIWEDHFYPEIIDPETGEVLPDGELGELVFTSLTKE----------ALPIIRYRTRDLTRLLPGT 318 (437)
T ss_dssp EEEEEECCTTTCSSCEECTTTEEEEEECTTTCCBCCTTCCEEEEEEESSCS----------SSCCCSEEEEEEECEECCS
T ss_pred CCeeEEecCCCCCceeEccCceEEEEEcCCCCCCCCCCCccEEEEecCCcC----------CchhheeecCCEEEEeCCC
Confidence 3567788864 99999999999999984311 01467999999999999 6
Q ss_pred CeE-----EEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCC---CCHHHHHHH
Q psy13807 129 GYG-----QVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGAS---LTQDDIKTY 200 (204)
Q Consensus 129 g~~-----~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~---~~~~~l~~~ 200 (204)
|++ ++.||.||+||++|.+|+|.+||++|.++|+|.++++++++++..++.++++|++.++.. .+.++++++
T Consensus 319 G~~~~~i~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~l~a~v~~~~~~~~~~~~~~~l~~~ 398 (437)
T 2y27_A 319 ARTMRRMEKITGRSDDMMIVRGVNVFPTQIEEQLLKQRALAPHYQIVLTKEGPLDVLTLNVEPCPETAPDTAAIQVAKQA 398 (437)
T ss_dssp SSSSCEECCCCEEGGGCEEETTEEECHHHHHHHHTTCTTBCSCCEEEEEEETTEEEEEEEECBCTTTTTCHHHHHHHHHH
T ss_pred CCCccccCccccccCCeEEECCeEECHHHHHHHHHhCcCcCccEEEEEeecCCCceEEEEEEECCCccchhhhHHHHHHH
Confidence 985 899999999999999999999999999999999999998887767789999999876643 234566666
Q ss_pred Hhc
Q psy13807 201 CKG 203 (204)
Q Consensus 201 l~~ 203 (204)
|++
T Consensus 399 l~~ 401 (437)
T 2y27_A 399 LAY 401 (437)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 33
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=99.97 E-value=5.2e-30 Score=211.71 Aligned_cols=187 Identities=19% Similarity=0.278 Sum_probs=153.8
Q ss_pred HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhCCc-----------
Q psy13807 2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGIK----------- 70 (204)
Q Consensus 2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g~~----------- 70 (204)
+++.|+++++|+++++|+++..|++....... ...++++|.+++||+++++++.+++.+.||+.
T Consensus 176 ~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~-----~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~ 250 (443)
T 2y4o_A 176 QVQLIRDFEPKIILVTPSYMLNLIDEMVRQGM-----DPAESSLKIGIFGAEPWTQALRNEVETRVGIDALDIYGLSEVM 250 (443)
T ss_dssp HHHHHHHHCCSEEEECHHHHHHHHHHHHHTTC-----CGGGSSCCEEEEESSCCCHHHHHHHHHHHTCEEEEEEEETTTT
T ss_pred HHHHHHHhCCcEEEECHHHHHHHHHHHHHcCC-----CcccCCceEEEECCCcCCHHHHHHHHHHhCcCEEeccCchhhc
Confidence 67899999999999999999999876533220 02357999999999999999999999887765
Q ss_pred --------------------ceEEEEECC-CCCcCCCCCeeEEEEEeCcccccccCCcccccCCCCceeccceEEEecC-
Q psy13807 71 --------------------HLIVKVVDK-KGNIVPMGMCGEVCYRGYNVMLGYYGEENKILENDEWFPSGDFFILHEN- 128 (204)
Q Consensus 71 --------------------~~~v~i~d~-~g~~~~~~~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~~TGD~~~~~~~- 128 (204)
++.++++|+ +|+++|.|+.|||++++.+.. ....+||+|||+++++++
T Consensus 251 g~~~~~~~~~~~~g~~~~~~~~~~~i~d~~~g~~~~~G~~Gel~v~~~t~~----------~~p~~~y~TGDl~~~~~~c 320 (443)
T 2y4o_A 251 GPGVACECVETKDGPVIWEDHFYPEIIDPVTGEVLPDGSQGELVFTSLTKE----------AMPVIRYRTRDLTALLPPT 320 (443)
T ss_dssp EEEEEEECTTTCCSEEECTTTEEEEEECTTTCCBCCTTCCEEEEEEESSCS----------SSCCSSEEEEEEECEECCS
T ss_pred CCeEEeccCCCCCceEEccCCeEEEEEcCCCCCCCCCCCceEEEEeCCCcc----------cChhheeecCCEEEEcCCC
Confidence 356778885 499999999999999984311 013679999999999999
Q ss_pred CeE-----EEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCC--CC---CCCHHHHH
Q psy13807 129 GYG-----QVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKP--GA---SLTQDDIK 198 (204)
Q Consensus 129 g~~-----~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~--~~---~~~~~~l~ 198 (204)
|++ ++.||.||+||++|.+|+|.+||++|.++|+|.++++++++++..++.++++|++.+ +. ..+.++++
T Consensus 321 G~~~~~l~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~l~ 400 (443)
T 2y4o_A 321 ARAMRRLAKITGRSDDMLIVRGVNVFPSQIEEIVVALPLLSGQFQITLSRDGHMDRLDLAVELRSEAAASVTDGERAALA 400 (443)
T ss_dssp SSSSCEECCCCEESSCCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEEETTEEEEEEEEEECHHHHTTCCHHHHHHHH
T ss_pred CCCccccCccccccCCeEEECCEEECHHHHHHHHHhCcCcCccEEEEEecCCCCceEEEEEEECCcccccchhhHHHHHH
Confidence 986 899999999999999999999999999999999999999887666788999999875 31 23345666
Q ss_pred HHHhc
Q psy13807 199 TYCKG 203 (204)
Q Consensus 199 ~~l~~ 203 (204)
++|++
T Consensus 401 ~~l~~ 405 (443)
T 2y4o_A 401 RELQH 405 (443)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66654
No 34
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=99.96 E-value=2.9e-29 Score=202.20 Aligned_cols=191 Identities=16% Similarity=0.169 Sum_probs=149.2
Q ss_pred HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhCCcceEEEEECCCC
Q psy13807 2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGIKHLIVKVVDKKG 81 (204)
Q Consensus 2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g~~~~~v~i~d~~g 81 (204)
+++.++++++|.+.++|++++.+++..... .++++||.+++||+++++++.+++.+ ++.+-+..+-..+.+
T Consensus 115 ~~~~i~~~~~t~~~~~P~~l~~ll~~~~~~--------~~l~~lr~v~~gG~~l~~~~~~~~~~-~~~~~~~~YG~TEt~ 185 (358)
T 4gs5_A 115 PLAGLDHADFDFVAMVPMQLQSILENSATS--------GQVDRLGKVLLGGAPVNHALAMQISD-LAMPVYQSYGMTETV 185 (358)
T ss_dssp TTTTCSSCCCSEEEECHHHHHHHHHCTTTG--------GGGGGGCSEEECSSCCCHHHHHHHHT-CSSCEEEEEECGGGS
T ss_pred HHHHHHHhCCeEEEcChHHHHHhhcccccc--------ccCCcceEEEEcccCCCchheecccc-cCceEEecccccccc
Confidence 356788999999999999999998865422 46889999999999999999999985 455422222222211
Q ss_pred -----CcCCCCCeeEEEEEeCcccccccCCcccccC----CCCceeccceEEEecCCeEEEEeeccceEEeCceeeChHH
Q psy13807 82 -----NIVPMGMCGEVCYRGYNVMLGYYGEENKILE----NDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKE 152 (204)
Q Consensus 82 -----~~~~~~~~Gel~v~~~~~~~~y~~~~~~~~~----~~~~~~TGD~~~~~~~g~~~~~GR~dd~i~~~G~~v~~~~ 152 (204)
++++.+..|++++..|++..+|.++.+.... .++||+|||++++|++| ++++||.||+||++|++|+|.+
T Consensus 186 ~~~~~~~~~~~~~g~~~~~~pgv~~~~~~~Gel~~~g~~~~~g~~~TGDlg~~d~~g-~~~~GR~dd~Ik~~G~~v~p~e 264 (358)
T 4gs5_A 186 SHVALKALNGPEASELYVFLPGIQYGVDERGCLHISGAVTNGQTVQTNDLVEIHGNA-FQWIGRADNVINSGGVKIVLDQ 264 (358)
T ss_dssp SEEEEEECSSTTCCSCEEECTTCEEEECTTSEEEEESGGGTTCCEEEEEEEEECSSE-EEEEEEGGGEEEETTEEEEHHH
T ss_pred ceeecccccccccceeeccCCCeEEEecCcCceEEecccccCcceecCCccccccCc-eEEcccccCeEEECCEEECHHH
Confidence 2344556788888888888888877665443 68999999999999988 6678999999999999999999
Q ss_pred HHHHHh---cCCCcceEEEE-eeeCCCCCceEEEEEEeCCCCCCCHHHHHHHHhc
Q psy13807 153 IEYVLQ---THPDVVEAQVY-GVPDERLGEVVVANIELKPGASLTQDDIKTYCKG 203 (204)
Q Consensus 153 ie~~l~---~~~~V~~~~v~-~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~ 203 (204)
||++|. .||+|.+++|+ +.+++..++.++++|+..++ ....++|+++|++
T Consensus 265 IE~~l~~~~~~p~V~~a~vv~~~~d~~~ge~~~a~v~~~~~-~~~~~~l~~~l~~ 318 (358)
T 4gs5_A 265 IDQRIAAVFHHLNIGNAFFCWWEPDAKLGQKLVLVIENAMP-EALTERLTAEIRS 318 (358)
T ss_dssp HHHHHHHHHHHHTCCCCEEEEEEEETTTEEEEEEEEESCCC-HHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCccEEEEEEecCCccCCEEEEEEEECCCC-CcCHHHHHHHHHh
Confidence 998774 57999998876 66778888899998886543 4456778888775
No 35
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=99.85 E-value=1.6e-21 Score=162.05 Aligned_cols=126 Identities=20% Similarity=0.344 Sum_probs=105.4
Q ss_pred HhHHHHHcCccEEEecHHHHHHHHhcc----CCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhCC------c-
Q psy13807 2 ISRHIVKEKCTVLYGTPTMYVDLISSI----QPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGI------K- 70 (204)
Q Consensus 2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~----~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g~------~- 70 (204)
+++.++++++| +.++|+++..++... .... .++++||.+++||+++++++.+++.+.|+. .
T Consensus 274 ~~~~i~~~~~t-~~~~p~~~~~l~~~~~~~~~~~~-------~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~~~ 345 (480)
T 3t5a_A 274 WMHLMASDFHA-FSAAPNFAFELAARRTTDDDMAG-------RDLGNILTILSGSERVQAATIKRFADRFARFNLQERVI 345 (480)
T ss_dssp HHHHTTSSSEE-EEEECHHHHHHHHHHCCTGGGTT-------CCCTTCCEEEECCTTCCHHHHHHHHHHSGGGTCCGGGE
T ss_pred HHHHHHhhcee-EeeChHHHHHHHHhhcCcccccc-------cchhhhheeeecCCcCCHHHHHHHHHHHhhcCCChhhc
Confidence 67889999999 888999888777642 2222 578999999999999999999999998742 1
Q ss_pred ------------------c-------------------------------------eEEEEECCC-CCcCCCCCeeEEEE
Q psy13807 71 ------------------H-------------------------------------LIVKVVDKK-GNIVPMGMCGEVCY 94 (204)
Q Consensus 71 ------------------~-------------------------------------~~v~i~d~~-g~~~~~~~~Gel~v 94 (204)
. +.++|+|++ |+++|.|+.|||++
T Consensus 346 ~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~p~~~~~~ivd~~~g~~~~~g~~GEl~v 425 (480)
T 3t5a_A 346 RPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRSPIVRIVDSDTCIECPDGTVGEIWV 425 (480)
T ss_dssp EEEEEETTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEECCSSSEEEEEETTTTEECCTTBCEEEEE
T ss_pred cccccccccceeEeecccCCCcceEEecHHHhccCceeecCCCCcceeeecCcccCCEEEEEcCCCCcCCCCCCEEEEEE
Confidence 0 137888877 79999999999999
Q ss_pred EeCcccccccCCcccccC--------------CCCceeccceEEEecCCeEEEEee
Q psy13807 95 RGYNVMLGYYGEENKILE--------------NDEWFPSGDFFILHENGYGQVVGR 136 (204)
Q Consensus 95 ~~~~~~~~y~~~~~~~~~--------------~~~~~~TGD~~~~~~~g~~~~~GR 136 (204)
+|++++.|||++++.++. .++||+|||+|+++ ||+++|.||
T Consensus 426 ~g~~v~~GY~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~~d-dG~l~~~GR 480 (480)
T 3t5a_A 426 HGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT-DGKMFIIGR 480 (480)
T ss_dssp ESTTSCCCBTTBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEEEE-TTEEEECC-
T ss_pred eCCccccccccCcchhHHHHhhhhccccCCCCCCCeeeccceeeEE-CCEEEEeCC
Confidence 999999999999887643 35699999999997 999999998
No 36
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=99.51 E-value=1.3e-14 Score=116.74 Aligned_cols=127 Identities=15% Similarity=0.123 Sum_probs=90.6
Q ss_pred HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHH-HHh-CCc---------
Q psy13807 2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIR-DTF-GIK--------- 70 (204)
Q Consensus 2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~-~~~-g~~--------- 70 (204)
+++.|+++++|.+.++|+++..|++...... ..++++|.+++||+++++++.+++. +.| ++.
T Consensus 197 ~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~-------~~~~~lr~i~~gGe~l~~~~~~~~~~~~~p~~~v~~~YG~TE 269 (369)
T 3hgu_A 197 VQNTLMNQDIRFLVTTPPVLRELLKRPEVVL-------QMKQSLAQITLGGTELNLDEIKFIASEILPDCEFSASYGSTS 269 (369)
T ss_dssp HHHHHHHSCEEEEEECHHHHHHHTTCHHHHH-------HHHHHCSEEEEESSCCCHHHHHHHHHHTCTTSEEEEEEEEGG
T ss_pred HHHHHHhCCCCEEEeCHHHHHHHHhhhhhhc-------cccCCeeEEEECCccCCHHHHHHHHHHhCCCcEEEcccCchh
Confidence 4559999999999999999999987643222 4568899999999999999999999 887 444
Q ss_pred ------------------------ceEEEEECC-CCCcCCCCCeeEEEEEeCcccccccCCcccccCCCCceeccceEEE
Q psy13807 71 ------------------------HLIVKVVDK-KGNIVPMGMCGEVCYRGYNVMLGYYGEENKILENDEWFPSGDFFIL 125 (204)
Q Consensus 71 ------------------------~~~v~i~d~-~g~~~~~~~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~~TGD~~~~ 125 (204)
++.++|+|+ +|+++|.|+.|||++++......+. .|+|||++.+
T Consensus 270 ~~~~~~~~~~~~~G~~~~~~~~~~~~~v~ivD~~~g~~vp~G~~GEl~vt~l~~~~~l~-----------ry~tgD~~~~ 338 (369)
T 3hgu_A 270 ALGVSRSLLITSESQQVIYDSFSPFITYDVVDSITAQTVEYGERGNVIVTHLSPWAFYP-----------RVAERDTAIR 338 (369)
T ss_dssp GTEEEEECCBCTTCSSCEEECCTTTEEEEEECTTTCSBCCTTCEEEEEEEEEETTEEEE-----------EEEEEEEEEE
T ss_pred hhcceeccccccCCCcccccCCCCCeEEEEECCCCCcCCCCCCceEEEEEEcCcccccc-----------cccCCceEEE
Confidence 467889998 7999999999999999853221121 2789999887
Q ss_pred ecC--C-------eEEEEeeccceEEeCce
Q psy13807 126 HEN--G-------YGQVVGRIKDIIIRGGE 146 (204)
Q Consensus 126 ~~~--g-------~~~~~GR~dd~i~~~G~ 146 (204)
.+. | .+..++|.++..++.|.
T Consensus 339 ~~~~~g~~~d~~~~v~~~~~~~~~~~i~gv 368 (369)
T 3hgu_A 339 LPGVSGFAGDRLADIEPLKISEGRKVIEGV 368 (369)
T ss_dssp ECCSTTCSSCEEEEEEECC-----------
T ss_pred ecCCCCCcCcccccceeccccCCCceeeec
Confidence 543 2 34556677777776663
No 37
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=99.37 E-value=2.4e-12 Score=85.95 Aligned_cols=61 Identities=20% Similarity=0.254 Sum_probs=55.3
Q ss_pred eeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCCHH
Q psy13807 135 GRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQD 195 (204)
Q Consensus 135 GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~ 195 (204)
.|.||+|+++|.|++|.+||++|.++|+|.++++++++++..++.+.++|+..++...+..
T Consensus 1 srADDmIiv~G~nv~P~eIE~vl~~~p~v~~~~vv~v~~~~~~~~~~~~V~~~~~~~~~~~ 61 (109)
T 3lax_A 1 SNADDMIILKGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVELSQLFTDDYG 61 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEECTTCCCCHH
T ss_pred CCcCEEEEECCEEECHHHHHHHHHhCCCcccceEEEEeccccceeEEEEEEEeeccccccc
Confidence 3899999999999999999999999999999999999998888999999999887665543
No 38
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics, PSI-2, protein structure initiative; 1.43A {Bacteroides vulgatus atcc 8482} PDB: 3lax_A
Probab=99.29 E-value=7.2e-12 Score=83.63 Aligned_cols=55 Identities=22% Similarity=0.336 Sum_probs=50.2
Q ss_pred eeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCC
Q psy13807 135 GRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGA 190 (204)
Q Consensus 135 GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~ 190 (204)
||.||+|+++|.+++|.+||++|.++|+|.++++++++++..++.++++|++ ++.
T Consensus 1 GR~~D~Iiv~G~nv~P~eIE~~l~~~p~v~~~~~v~v~~~~~~e~l~~~ve~-~~~ 55 (109)
T 3gxs_A 1 SNADDMIILKGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVEL-SQL 55 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEE-CTT
T ss_pred CCccCEEEECCEEECHHHHHHHHHhCCCcCCcEEEEEEcCCCceEEEEEEEE-cCc
Confidence 8999999999999999999999999999999998888877777889999998 653
No 39
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=98.28 E-value=4.4e-06 Score=70.83 Aligned_cols=103 Identities=17% Similarity=0.190 Sum_probs=70.0
Q ss_pred cCCCCCeeEEEEEeCcccccccCCcccccCCCCceeccceEEEec----CCeEEEEeeccceEEeCceeeChHHHHHHHh
Q psy13807 83 IVPMGMCGEVCYRGYNVMLGYYGEENKILENDEWFPSGDFFILHE----NGYGQVVGRIKDIIIRGGENIIPKEIEYVLQ 158 (204)
Q Consensus 83 ~~~~~~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~~TGD~~~~~~----~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~ 158 (204)
.|..|+.++|++++.+ |+|+ |++||+.++.. ...+.|.||.++++++.|.++++.+||+++.
T Consensus 392 eVe~G~~YelViTt~~---GL~R-----------Yr~GD~v~v~~f~~~~p~i~~~gR~~~~l~~~Geki~~~~v~~av~ 457 (609)
T 4b2g_A 392 HVEVGKEYELVITTYA---GLYR-----------YRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDSDKTDEAELQKAVD 457 (609)
T ss_dssp GCCTTCEEEEEEECTT---SCCS-----------EEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHHH
T ss_pred HcCCCCeEEEehhhhh---hhhh-----------eecCCEEEEeecCCCCcEEEEEEecCCeEEccccCCCHHHHHHHHH
Confidence 4567888999997663 5554 89999999873 3679999999999999999999999999887
Q ss_pred cC------CC--cceEEEEeeeCCCCCceEEEEEEeCC---CCCCCHHHHHHH
Q psy13807 159 TH------PD--VVEAQVYGVPDERLGEVVVANIELKP---GASLTQDDIKTY 200 (204)
Q Consensus 159 ~~------~~--V~~~~v~~~~~~~~~~~~~a~v~~~~---~~~~~~~~l~~~ 200 (204)
.. .+ |.|..+..-... ....-+.+.++.. ....+++.+.+.
T Consensus 458 ~a~~~l~~~g~~l~eft~~~d~~~-~p~Hyv~~wEl~~~~~~~~~~~~~l~~~ 509 (609)
T 4b2g_A 458 NASKLLREVNTSVVEYTSFADTKT-IPGHYVIYWELLVKDSANSPSDELLGQC 509 (609)
T ss_dssp HHHHGGGGTTEEEEEEEEEEECSS-SSCEEEEEEEEEESCGGGCCCHHHHHHH
T ss_pred HHHHhhhccCCeEEEEEEecCCCC-CCCcEEEEEEEecccccCCCCHHHHHHH
Confidence 32 23 456666532222 2224444455531 123445555543
No 40
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=98.23 E-value=6.4e-06 Score=69.59 Aligned_cols=63 Identities=14% Similarity=0.216 Sum_probs=52.0
Q ss_pred CCCCCeeEEEEEeCcccccccCCcccccCCCCceeccceEEEec----CCeEEEEeeccceEEeCceeeChHHHHHHHhc
Q psy13807 84 VPMGMCGEVCYRGYNVMLGYYGEENKILENDEWFPSGDFFILHE----NGYGQVVGRIKDIIIRGGENIIPKEIEYVLQT 159 (204)
Q Consensus 84 ~~~~~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~~TGD~~~~~~----~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~ 159 (204)
|..|+.++|++++.+ |.|+ |++||+.+... ..++.|.||.++++++.|++++..+||+++.+
T Consensus 381 Ve~G~~YelViTt~~---GL~R-----------Yr~GD~v~v~~f~~~~p~i~f~gR~~~~l~~~Gekl~~~~v~~al~~ 446 (581)
T 4eql_A 381 VKLGCTYEPVVTNFA---GLYR-----------MRVGDIVLVTGFYNNAPQFKFVRRENVVLSIDSDKTNEEDLFKAVSQ 446 (581)
T ss_dssp CCTTCEEEEEEECSS---SCCS-----------EECCEEEEEEEEETTEEEEEEEEETTEEECSSSCCEEHHHHHHHHHH
T ss_pred cCCCceEEEEEeecc---ceee-----------EEcCCEEEEcccCCCCcEEEEEEecCCEEEeeeeECCHHHHHHHHHH
Confidence 346777888887763 3443 89999999875 35799999999999999999999999998885
Q ss_pred C
Q psy13807 160 H 160 (204)
Q Consensus 160 ~ 160 (204)
.
T Consensus 447 a 447 (581)
T 4eql_A 447 A 447 (581)
T ss_dssp C
T ss_pred H
Confidence 4
No 41
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=98.11 E-value=1.6e-05 Score=67.12 Aligned_cols=101 Identities=15% Similarity=0.143 Sum_probs=69.5
Q ss_pred cCCCCCeeEEEEEeCcccccccCCcccccCCCCceeccceEEEecC----CeEEEEeeccceEEeCceeeChHHHHHHHh
Q psy13807 83 IVPMGMCGEVCYRGYNVMLGYYGEENKILENDEWFPSGDFFILHEN----GYGQVVGRIKDIIIRGGENIIPKEIEYVLQ 158 (204)
Q Consensus 83 ~~~~~~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~~TGD~~~~~~~----g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~ 158 (204)
.|..|+.++|++++.+ |.|+ |++||+.+...- ..+.|.||.++++++.|.+++..+|++++.
T Consensus 387 eve~G~~YelviTt~~---GL~R-----------Yr~GD~v~v~g~~~~~p~~~~~gR~~~~l~~~Ge~~~~~~v~~al~ 452 (581)
T 4epl_A 387 QVKIGEEYEVVITNYA---GLYR-----------YRLGDVVKVIGFYNNTPQLKFICRRNLILSINIDKNTERDLQLSVE 452 (581)
T ss_dssp GCCTTCEEEEEEESTT---SCSS-----------EEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHHH
T ss_pred HcCCCCeEEEEEeecc---ceee-----------EEcCCEEEEecccCCCcEEEEEeecCCeEEeeeeECCHHHHHHHHH
Confidence 4557788888888764 4443 899999998642 469999999999999999999999999887
Q ss_pred cC--------CCcceEEEEeeeCCCCCceEEEEEEeCCCCCCCHHHHHHH
Q psy13807 159 TH--------PDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTY 200 (204)
Q Consensus 159 ~~--------~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~ 200 (204)
.. -.|.|..+.+-... ....-+.+.++.. ..+.+.+.+.
T Consensus 453 ~a~~~l~~~~~~l~eft~~~d~~~-~p~hyv~~wE~~~--~~~~~~l~~~ 499 (581)
T 4epl_A 453 SAAKRLSEEKIEVIDFSSYIDVST-DPGHYAIFWEISG--ETNEDVLQDC 499 (581)
T ss_dssp HHHHHHHTTTCCEEEEEEEEECSS-SSCEEEEEEEESS--CCCHHHHHHH
T ss_pred HHHHhhcccCCeEEEEEEecCCCC-CCCcEEEEEeecC--CCCHHHHHHH
Confidence 42 24667766653222 2234444557642 2444444443
No 42
>3bpd_A Uncharacterized protein; heptamer, Mg+2 ION, PSI-2, NYSGXRC, structural genom protein structure initiative; 2.80A {Archaeoglobus fulgidus dsm 4304} SCOP: d.58.61.1
Probab=52.92 E-value=40 Score=21.15 Aligned_cols=60 Identities=15% Similarity=0.108 Sum_probs=43.6
Q ss_pred ceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCCHHHHHHHHhc
Q psy13807 139 DIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCKG 203 (204)
Q Consensus 139 d~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~ 203 (204)
|++|- ..-+..++...|...++|..+-+...+-+...+-+...++ |..++.+++++.+.+
T Consensus 12 DVlKP--h~P~ivdlA~~l~~~~gV~gVnItV~EvD~eTe~lkItIE---G~dIdfd~I~~~IE~ 71 (100)
T 3bpd_A 12 DVLKP--HEPKTIVFALKLSELENVDGVNIHLSEIDQATENIKITIL---GNNLDYEQIKGVIED 71 (100)
T ss_dssp EEEEE--SCSCHHHHHHHHHTSTTEEEEEEEEEEECSSEEEEEEEEE---EEEECHHHHHHHHHT
T ss_pred EecCC--CCCCHHHHHHHHHhCCCcceEEEEEEEeeccccEEEEEEE---ecCCCHHHHHHHHHH
Confidence 55665 4456678888999999999888888776665555544444 556888999888764
No 43
>4ap8_A Molybdopterin synthase catalytic subunit; transferase; 2.78A {Homo sapiens}
Probab=41.52 E-value=31 Score=23.07 Aligned_cols=66 Identities=14% Similarity=0.233 Sum_probs=39.0
Q ss_pred eccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCCHHHHHHHH
Q psy13807 136 RIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYC 201 (204)
Q Consensus 136 R~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l 201 (204)
+..|+|++.-..+++.++.+.+..-..-.-+..+|.-.+..+...+..+.+..........|.+.+
T Consensus 5 ~~~d~i~it~e~l~~~~~~~~v~~p~~GAvv~F~G~VR~~~~g~~V~~L~ye~y~~ma~~~l~~I~ 70 (135)
T 4ap8_A 5 KSKDVINFTAEKLSVDEVSQLVISPLCGAISLFVGTTRNNFEGKKVISLEYEAYLPMAENEVRKIC 70 (135)
T ss_dssp CCCEEEEEESSCCCHHHHHHHTCCTTCSEEEEEEEECCSEETTEEEEEEEEEEEETHHHHHHHHHH
T ss_pred CCCCeEEEEcCCCCHHHHHHHhcCCCCCeEEEEEEEECCCCCCCcEEEEEEEecchHHHHHHHHHH
Confidence 467889999999999999887765433344555565544333344444555432234444554443
No 44
>2cvi_A 75AA long hypothetical regulatory protein ASNC; structural genomics, unknown function; 1.50A {Pyrococcus horikoshii} PDB: 2z4p_A 2e1a_A
Probab=41.09 E-value=54 Score=19.23 Aligned_cols=43 Identities=23% Similarity=0.268 Sum_probs=28.4
Q ss_pred hHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCCHHHHHHHHh
Q psy13807 150 PKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCK 202 (204)
Q Consensus 150 ~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~ 202 (204)
..++++.+.++|+|.+|..+.- .....+.|... +.+++.+.+.
T Consensus 15 ~~~~~~~l~~~peV~e~~~vtG-----~~D~ll~v~~~-----d~~~l~~~i~ 57 (83)
T 2cvi_A 15 EREVMEKLLAMPEVKEAYVVYG-----EYDLIVKVETD-----TLKDLDQFIT 57 (83)
T ss_dssp HHHHHHHHHTSTTEEEEEECBS-----SCSEEEEEEES-----SHHHHHHHHH
T ss_pred HHHHHHHHhCCCCeeEEEEEcc-----cCCEEEEEEEC-----CHHHHHHHHH
Confidence 3788999999999999988743 22445555543 3455555543
No 45
>2raq_A Conserved protein MTH889; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 3.11A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: d.58.61.1
Probab=38.84 E-value=70 Score=19.96 Aligned_cols=60 Identities=20% Similarity=0.186 Sum_probs=44.1
Q ss_pred ceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCCHHHHHHHHhc
Q psy13807 139 DIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCKG 203 (204)
Q Consensus 139 d~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~ 203 (204)
|++|- ..-+..++...|..+++|..+-+...+-+...+-+...++ |...+.+++++.+.+
T Consensus 12 DVlKP--h~p~i~d~A~~l~~~~gV~gVnItv~EvD~eTe~lkitiE---G~~id~d~I~~~IE~ 71 (97)
T 2raq_A 12 DILKP--HEPIIPEYAKYLSELRGVEGVNITLMEIDKETENIKVTIQ---GNDLDFDEITRAIES 71 (97)
T ss_dssp EEECC--SCSCHHHHHHHHHHSTTCCEEEEEEEEECSSCEEEEEEEE---CSSCCHHHHHHHHHH
T ss_pred EecCC--CCCCHHHHHHHHHhCCCcceEEEEEEEeeccccEEEEEEE---ecCCCHHHHHHHHHH
Confidence 45554 4456678888999999999888888876666555555544 667999999988764
No 46
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=38.69 E-value=51 Score=18.32 Aligned_cols=46 Identities=22% Similarity=0.295 Sum_probs=30.7
Q ss_pred ChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCCHHHHHHHHh
Q psy13807 149 IPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCK 202 (204)
Q Consensus 149 ~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~ 202 (204)
....||+.|..+++|..+.|-.... .+.|...+ ...+.+++.+.++
T Consensus 16 C~~~ie~~l~~~~gv~~~~v~~~~~-------~~~v~~~~-~~~~~~~i~~~i~ 61 (74)
T 3dxs_X 16 CSNSVEAALMNVNGVFKASVALLQN-------RADVVFDP-NLVKEEDIKEEIE 61 (74)
T ss_dssp HHHHHHHHHHTSTTEEEEEEEGGGT-------EEEEEECT-TTCCHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEEEEecCC-------EEEEEECC-CCCCHHHHHHHHH
Confidence 4568999999999998877753322 23445443 3467777877664
No 47
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=34.00 E-value=1.2e+02 Score=21.76 Aligned_cols=51 Identities=24% Similarity=0.299 Sum_probs=29.3
Q ss_pred HhHHHHHcCccEEEe------cHHH--HHHHHhccCCCCCCCcccccCC-CCceEEEEeCCCCCHHHHHH
Q psy13807 2 ISRHIVKEKCTVLYG------TPTM--YVDLISSIQPLTEEMPNIAEEL-SSPVIALTAGAPCSPTLFNK 62 (204)
Q Consensus 2 ~~~~i~~~~~t~~~~------~P~~--~~~l~~~~~~~~~~~~~~~~~l-~~l~~~~~~G~~~~~~~~~~ 62 (204)
+++.+++++++.+.+ +++. ++.+.+..+.. .+ ..+ .+++||.+++++..+.
T Consensus 135 iv~~~~~~~~d~v~l~~S~l~~~~~~~~~~~i~~l~~~---------~~~~~v-~v~vGG~~~~~~~a~~ 194 (215)
T 3ezx_A 135 VVEEAAKHKGEKVLLVGSALMTTSMLGQKDLMDRLNEE---------KLRDSV-KCMFGGAPVSDKWIEE 194 (215)
T ss_dssp HHHHHHHTTTSCEEEEEECSSHHHHTHHHHHHHHHHHT---------TCGGGS-EEEEESSSCCHHHHHH
T ss_pred HHHHHHHcCCCEEEEEchhcccCcHHHHHHHHHHHHHc---------CCCCCC-EEEEECCCCCHHHHHH
Confidence 578889999998777 2222 22222222111 11 133 3788999999875543
No 48
>2zbc_A 83AA long hypothetical transcriptional regulator; SARD; 1.90A {Sulfolobus tokodaii}
Probab=33.57 E-value=71 Score=18.44 Aligned_cols=42 Identities=21% Similarity=0.252 Sum_probs=26.8
Q ss_pred hHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCCHHHHHHHH
Q psy13807 150 PKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYC 201 (204)
Q Consensus 150 ~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l 201 (204)
..++.+.+.++|+|.+|..+.- .....+.+... +.+++.+.+
T Consensus 15 ~~~~~~~l~~~peV~~~~~vtG-----~~d~l~~v~~~-----d~~~l~~~~ 56 (83)
T 2zbc_A 15 EDEVFERLKSMSEVTEVHVVYG-----VYDIVVKVEAD-----SMDKLKDFV 56 (83)
T ss_dssp HHHHHHHHTTCTTEEEEEECSS-----SCSEEEEEECS-----SHHHHHHHH
T ss_pred HHHHHHHHhCCCCeEEEEEEec-----cCCEEEEEEEC-----CHHHHHHHH
Confidence 3688899999999999888732 22344555442 345555444
No 49
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=33.55 E-value=60 Score=17.63 Aligned_cols=46 Identities=17% Similarity=0.125 Sum_probs=30.4
Q ss_pred ChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCCHHHHHHHHhc
Q psy13807 149 IPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCKG 203 (204)
Q Consensus 149 ~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~ 203 (204)
....||+.|...++|..+.+-.... .+.|.. + ...+.+++.+.+++
T Consensus 16 C~~~i~~~l~~~~gv~~~~v~~~~~-------~~~v~~-~-~~~~~~~i~~~i~~ 61 (69)
T 4a4j_A 16 CASSIERAIAKVPGVQSCQVNFALE-------QAVVSY-H-GETTPQILTDAVER 61 (69)
T ss_dssp HHHHHHHHHHTSTTEEEEEEETTTT-------EEEEEE-C-TTCCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCeEEEEEEecCC-------EEEEEE-C-CCCCHHHHHHHHHH
Confidence 4578999999999998877653211 233444 3 35677888777653
No 50
>3zxw_B Ribulose bisphosphate carboxylase small chain; CO2/O2 specificity, carbon dioxide fixation, photosynthesis, thermostability; HET: KCX CAP; 2.10A {Thermosynechococcus elongatus} PDB: 2ybv_B*
Probab=29.18 E-value=1.2e+02 Score=19.70 Aligned_cols=40 Identities=18% Similarity=0.161 Sum_probs=27.7
Q ss_pred hHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCC
Q psy13807 150 PKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGAS 191 (204)
Q Consensus 150 ~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~ 191 (204)
+.|||+..+.+|+ .-+-++|... ....+...||+-+|+..
T Consensus 70 l~Ele~C~k~~p~-~yVRliGfD~-~~q~q~~sfIv~RP~~~ 109 (118)
T 3zxw_B 70 LNEVQQCRSEYPN-CFIRVVAFDN-IKQCQVMSFIVYKPNQA 109 (118)
T ss_dssp HHHHHHHHHHCTT-SEEEEEEEET-TTTEEEEEEEEECC---
T ss_pred HHHHHHHHHHCCC-ceEEEEEEeC-CcCEEEEEEEEECCCCC
Confidence 3689999999987 3566666654 45556789999988643
No 51
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=28.89 E-value=72 Score=19.56 Aligned_cols=41 Identities=22% Similarity=0.317 Sum_probs=29.6
Q ss_pred ceEEEEeCCCCC-HHHHHHHHHHhCCc---ceEEEEECCCCCcCCC
Q psy13807 45 PVIALTAGAPCS-PTLFNKIRDTFGIK---HLIVKVVDKKGNIVPM 86 (204)
Q Consensus 45 l~~~~~~G~~~~-~~~~~~~~~~~g~~---~~~v~i~d~~g~~~~~ 86 (204)
++.+.+-- .++ .++.+++++.++.. ...++..|++|.++.-
T Consensus 17 i~~~~v~~-~i~~~~L~~kv~~~~~~~~~~~f~lky~DEeGD~iti 61 (89)
T 1vd2_A 17 IMITHFEP-SISFEGLCNEVRDMCSFDNEQLFTMKWIDEEGDPCTV 61 (89)
T ss_dssp EEEEEECT-TCCHHHHHHHHHHHTTCCSSCCEEEEECCSSSCCEEC
T ss_pred EEEEECCC-CCCHHHHHHHHHHHhCCCCCCeEEEEEECCCCCcccc
Confidence 44343333 344 89999999999864 5889999999887653
No 52
>2cqa_A RUVB-like 2; TIP48, TIP49B, reptin 52, ECP-51, TAP54-beta, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.40.4.14
Probab=27.87 E-value=54 Score=20.44 Aligned_cols=23 Identities=22% Similarity=0.341 Sum_probs=20.2
Q ss_pred eeccceEEEecC-CeEEEEeeccc
Q psy13807 117 FPSGDFFILHEN-GYGQVVGRIKD 139 (204)
Q Consensus 117 ~~TGD~~~~~~~-g~~~~~GR~dd 139 (204)
...||..++|.+ |.+.-+||++.
T Consensus 63 V~~GDVI~Id~~sG~V~klGRs~~ 86 (95)
T 2cqa_A 63 VQAGDVITIDKATGKISKLGRSFT 86 (95)
T ss_dssp CCTTSEEEEETTTTEEEEEECCCC
T ss_pred ceeCCEEEEEccCCEEEEEEEeec
Confidence 689999999976 99999999853
No 53
>3e8v_A Possible transglutaminase-family protein; structural genomics, unknown function, PSI-2, protein structure initiative; 2.40A {Bacteroides fragilis nctc 9343}
Probab=26.46 E-value=46 Score=20.16 Aligned_cols=15 Identities=33% Similarity=0.211 Sum_probs=13.0
Q ss_pred eEEEEECCCCCcCCC
Q psy13807 72 LIVKVVDKKGNIVPM 86 (204)
Q Consensus 72 ~~v~i~d~~g~~~~~ 86 (204)
+.+.++|.+|+|++.
T Consensus 3 ~~v~V~d~~GkPV~g 17 (82)
T 3e8v_A 3 GSVLVTDAEGQPVAD 17 (82)
T ss_dssp EEEEEECTTSCBCTT
T ss_pred EEEEEEcCCCCCCCC
Confidence 578999999999974
No 54
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=24.59 E-value=1.2e+02 Score=18.55 Aligned_cols=28 Identities=14% Similarity=0.350 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhCCcceEEEEECCCCCcC
Q psy13807 57 PTLFNKIRDTFGIKHLIVKVVDKKGNIV 84 (204)
Q Consensus 57 ~~~~~~~~~~~g~~~~~v~i~d~~g~~~ 84 (204)
.++...++..||.....++..|+++.++
T Consensus 31 eel~~mvk~~f~L~~~~ikY~DEenD~v 58 (87)
T 2bkf_A 31 ADIEAMVKVSFDLNTIQIKYLDEENEEV 58 (87)
T ss_dssp HHHHHHHHHHHTCSSEEEEEECTTSCEE
T ss_pred HHHHHHHHHHcCCCceEEEEEcCCCCEE
Confidence 7888899999999999999999987644
No 55
>3csy_I Envelope glycoprotein GP1; glycoprotein-antibody complex, immune system-viral protein C; HET: NAG BMA MAN; 3.40A {Zaire ebola virus}
Probab=23.67 E-value=74 Score=23.40 Aligned_cols=30 Identities=27% Similarity=0.443 Sum_probs=23.6
Q ss_pred eccceEEEecCCeEEEEeeccceEEeCceee
Q psy13807 118 PSGDFFILHENGYGQVVGRIKDIIIRGGENI 148 (204)
Q Consensus 118 ~TGD~~~~~~~g~~~~~GR~dd~i~~~G~~v 148 (204)
+.||++. +.+|.|++..|....+..+|..+
T Consensus 132 c~~~~Af-Hk~GAFFLYDRlAST~iYRg~~F 161 (334)
T 3csy_I 132 CAGDFAF-HKEGAFFLYDRLASTVIYRGTTF 161 (334)
T ss_dssp CCSSEEE-ETTSCEEECSSEEESSCCTTCEE
T ss_pred CCCceeE-ecccceeeehhhhheeEecccee
Confidence 5677774 47899999999988888887653
No 56
>2x3d_A SSO6206; unknown function; 2.70A {Sulfolobus solfataricus}
Probab=22.88 E-value=1.4e+02 Score=18.50 Aligned_cols=52 Identities=17% Similarity=0.105 Sum_probs=38.7
Q ss_pred ChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCCHHHHHHHHhc
Q psy13807 149 IPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCKG 203 (204)
Q Consensus 149 ~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~ 203 (204)
+..++...|..+++|..+-+...+-+...+-+...++ |...+.+++++.+.+
T Consensus 19 ~ivd~A~~l~~~~gV~gVnItv~EvD~eTe~lkItIE---G~~idfd~I~~~IE~ 70 (96)
T 2x3d_A 19 SIVDLAERISKLDGVEGVNISVTDMDVETMGLMIIIE---GTSLNFDDIRKMLEE 70 (96)
T ss_dssp CHHHHHHHHHTSTTEEEEEEEEEEECSSEEEEEEEEE---ESSCCHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCcceEEEEEEEeeccccEEEEEEE---ecCCCHHHHHHHHHH
Confidence 4567788999999999888887776665555544444 567899999988754
No 57
>3l48_A Outer membrane usher protein PAPC; IG fold, greek KEY, cell outer membrane, fimbrium, transmembrane, transport, transport protein; 2.10A {Escherichia coli} PDB: 2kt6_A
Probab=21.18 E-value=92 Score=19.15 Aligned_cols=18 Identities=22% Similarity=0.333 Sum_probs=13.5
Q ss_pred eEEEEECCCCCcCCCCCe
Q psy13807 72 LIVKVVDKKGNIVPMGMC 89 (204)
Q Consensus 72 ~~v~i~d~~g~~~~~~~~ 89 (204)
+-+.+.+.+|+++|.|..
T Consensus 10 ~ll~l~~~dG~plPfGA~ 27 (94)
T 3l48_A 10 LFAILRLADGSQPPFGAS 27 (94)
T ss_dssp EEEEEEETTSCCCCTTCE
T ss_pred EEEEEECCCCCcCCCccE
Confidence 456677888999998763
No 58
>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=20.65 E-value=1.3e+02 Score=17.84 Aligned_cols=25 Identities=24% Similarity=0.383 Sum_probs=17.7
Q ss_pred eccceEE-eCceee---ChHHHHHHHhcC
Q psy13807 136 RIKDIII-RGGENI---IPKEIEYVLQTH 160 (204)
Q Consensus 136 R~dd~i~-~~G~~v---~~~~ie~~l~~~ 160 (204)
|..|+|. ++|..+ +..++.+.++..
T Consensus 50 ~~GD~Il~Ing~~v~~~~~~~~~~~l~~~ 78 (90)
T 1y7n_A 50 RVGHRIIEINGQSVVATPHEKIVHILSNA 78 (90)
T ss_dssp CSSCEEEEETTEECTTSCHHHHHHHHHHC
T ss_pred CCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence 4455444 899998 577888877754
No 59
>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A
Probab=20.64 E-value=1.1e+02 Score=18.72 Aligned_cols=25 Identities=16% Similarity=0.388 Sum_probs=18.5
Q ss_pred eccceEE-eCceeeC---hHHHHHHHhcC
Q psy13807 136 RIKDIII-RGGENII---PKEIEYVLQTH 160 (204)
Q Consensus 136 R~dd~i~-~~G~~v~---~~~ie~~l~~~ 160 (204)
|..|.|. ++|..+. ..++.+.++..
T Consensus 56 ~~GD~Il~ING~~v~~~~~~~~~~~l~~~ 84 (97)
T 2ejy_A 56 HVGDEILEINGTNVTNHSVDQLQKAMKET 84 (97)
T ss_dssp CTTCEEEEETTBCCCSSCSHHHHHHHHHC
T ss_pred CCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence 3455444 8999987 78888888864
Done!