RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13807
(204 letters)
>gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 347
Score = 220 bits (563), Expect = 1e-71
Identities = 95/239 (39%), Positives = 130/239 (54%), Gaps = 48/239 (20%)
Query: 6 IVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEE-LSSPVIALTAGAPCSPTLFNKIR 64
I +E+ T L+G PTM++ L+ E P+ + LSS ++ GAP P L +IR
Sbjct: 87 IERERITALHGVPTMFIALL--------EHPDFDKFDLSSLRTGISGGAPVPPELVRRIR 138
Query: 65 DTFGIKHLI------------------------------------VKVVDKKGNIVPMGM 88
+ F + + VK+VD G VP G
Sbjct: 139 EEFPMAEITTGYGMTETSGVGTQTSGDDPYEDRPGTVGRPLPGVEVKIVDPDGGEVPPGE 198
Query: 89 CGEVCYRGYNVMLGYYG---EENKILENDEWFPSGDFFILHENGYGQVVGRIKDIIIRGG 145
GE+C RGY+VM GYY + ++ D W +GD + E+GY ++VGRIKD+IIRGG
Sbjct: 199 VGEICVRGYSVMKGYYNDPEATAEAIDADGWLHTGDLGYMDEDGYLRIVGRIKDMIIRGG 258
Query: 146 ENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCKGK 204
ENI P EIE L THP V EA V GVPDERLGEVV A + LKPGA+LT++++ +C+G+
Sbjct: 259 ENIYPAEIEEALLTHPAVAEAAVVGVPDERLGEVVAAFVVLKPGATLTEEELIAFCRGR 317
>gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated.
Length = 559
Score = 200 bits (512), Expect = 7e-62
Identities = 97/238 (40%), Positives = 131/238 (55%), Gaps = 49/238 (20%)
Query: 8 KEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAE-ELSSPVIALTAGAPC----------- 55
+E+CT LYG PTM+ I L + P+ A +LSS + AG+PC
Sbjct: 287 EERCTALYGVPTMF------IAEL--DHPDFARFDLSSLRTGIMAGSPCPIEVMKRVIDK 338
Query: 56 ---------------SPTLFNKIRD--------TFG--IKHLIVKVVD-KKGNIVPMGMC 89
SP D T G + HL VK+VD + G VP G
Sbjct: 339 MHMSEVTIAYGMTETSPVSTQTRTDDPLEKRVTTVGRALPHLEVKIVDPETGETVPRGEQ 398
Query: 90 GEVCYRGYNVMLGYYGEENK---ILENDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGE 146
GE+C RGY+VM GY+ + K ++ D W +GD ++ E GY +VGRIKD+IIRGGE
Sbjct: 399 GELCTRGYSVMKGYWNDPEKTAEAIDADGWMHTGDLAVMDEEGYVNIVGRIKDMIIRGGE 458
Query: 147 NIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCKGK 204
NI P+EIE L THP + + QV GVPDE+ GE V A I L+PGA+LT++D++ +C+GK
Sbjct: 459 NIYPREIEEFLYTHPKIQDVQVVGVPDEKYGEEVCAWIILRPGATLTEEDVRDFCRGK 516
>gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional.
Length = 558
Score = 184 bits (470), Expect = 9e-56
Identities = 89/241 (36%), Positives = 125/241 (51%), Gaps = 48/241 (19%)
Query: 4 RHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAE-ELSSPVIALTAGAPCSPTLFNK 62
+ + +E+CT LYG PTM+ I+ + + P +LSS + AGAPC + +
Sbjct: 285 QAVEEERCTALYGVPTMF---IAEL-----DHPQRGNFDLSSLRTGIMAGAPCPIEVMRR 336
Query: 63 IRD----------------------------------TFG--IKHLIVKVVDKKGNIVPM 86
+ D T G HL VKVVD G VP
Sbjct: 337 VMDEMHMAEVQIAYGMTETSPVSLQTTAADDLERRVETVGRTQPHLEVKVVDPDGATVPR 396
Query: 87 GMCGEVCYRGYNVMLGYYGEENKILE---NDEWFPSGDFFILHENGYGQVVGRIKDIIIR 143
G GE+C RGY+VM GY+ E D W +GD + E GY ++VGR KD+IIR
Sbjct: 397 GEIGELCTRGYSVMKGYWNNPEATAESIDEDGWMHTGDLATMDEQGYVRIVGRSKDMIIR 456
Query: 144 GGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCKG 203
GGENI P+EIE L THP V + QV+GVPDE+ GE +VA + L PG + ++++++ +CK
Sbjct: 457 GGENIYPREIEEFLFTHPAVADVQVFGVPDEKYGEEIVAWVRLHPGHAASEEELREFCKA 516
Query: 204 K 204
+
Sbjct: 517 R 517
>gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases
II [Lipid metabolism / Secondary metabolites
biosynthesis, transport, and catabolism].
Length = 534
Score = 168 bits (427), Expect = 1e-49
Identities = 86/240 (35%), Positives = 120/240 (50%), Gaps = 48/240 (20%)
Query: 6 IVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPV-IALTAGAPCSPTLFNKIR 64
I K K TVL G PT +L+ + + ++LSS + + L+ GAP P L +
Sbjct: 260 IEKYKVTVLSGVPTFLRELLDNPEK-------DDDDLSSSLRLVLSGGAPLPPELLERFE 312
Query: 65 DTFGIKHLI-----------------------------------VKVVDKKGNIVPMGMC 89
+ FG ++ V++VD G V G
Sbjct: 313 ERFGPIAILEGYGLTETSPVVTINPPDDLLAKPGSVGRPLPGVEVRIVDPDGGEVLPGEV 372
Query: 90 GEVCYRGYNVMLGYYG--EEN-KILENDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGE 146
GE+ RG NVM GY+ E + + D W +GD + E+GY +VGR+KD+II GGE
Sbjct: 373 GEIWVRGPNVMKGYWNRPEATAEAFDEDGWLRTGDLGYVDEDGYLYIVGRLKDLIISGGE 432
Query: 147 NIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPG--ASLTQDDIKTYCKGK 204
NI P+EIE VL HP V EA V GVPDER GE VVA + LKPG A LT ++++ + + +
Sbjct: 433 NIYPEEIEAVLAEHPAVAEAAVVGVPDERWGERVVAVVVLKPGGDAELTAEELRAFLRKR 492
>gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA
synthetases similar to Escherichia coli FadD. This
subfamily of the AMP-forming adenylation family contains
Escherichia coli FadD and similar prokaryotic fatty acid
CoA synthetases. FadD was characterized as a long-chain
fatty acid CoA synthetase. The gene fadD is regulated by
the fatty acid regulatory protein FadR. Fatty acid CoA
synthetase catalyzes the formation of fatty acyl-CoA in
a two-step reaction: the formation of a fatty acyl-AMP
molecule as an intermediate, followed by the formation
of a fatty acyl-CoA. This is a required step before free
fatty acids can participate in most catabolic and
anabolic reactions.
Length = 468
Score = 163 bits (414), Expect = 3e-48
Identities = 80/234 (34%), Positives = 115/234 (49%), Gaps = 44/234 (18%)
Query: 5 HIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAE-ELSSPVIALTAGAP--------- 54
I + + T+ G PT+Y L+ P + + SS + ++ GAP
Sbjct: 211 EIKRYRFTIFPGVPTLYNALL--------NHPEFKKYDFSSLRLCISGGAPLPVEVAERF 262
Query: 55 ----------------CSP-TLFNKIRD-----TFG--IKHLIVKVVDKKGNIVPMGMCG 90
SP T N + + G + VK+VD +GN +P G G
Sbjct: 263 EEKTGAPLVEGYGLTETSPVTTVNPLDGERKPGSIGLPLPGTEVKIVDDEGNELPPGEVG 322
Query: 91 EVCYRGYNVMLGYYG--EENKILENDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENI 148
E+ RG VM GY+ EE + D W +GD + E+GY +V R KD+II GG N+
Sbjct: 323 ELVVRGPQVMKGYWNRPEETAEVLTDGWLRTGDIGYMDEDGYFYIVDRKKDMIIVGGFNV 382
Query: 149 IPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCK 202
P+EIE VL +HP V+EA V GVPD GE V A + LK GASLT++++ +C+
Sbjct: 383 YPREIEEVLYSHPAVLEAAVVGVPDPYRGEAVKAFVVLKEGASLTEEELIAFCR 436
>gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I. This
family includes acyl- and aryl-CoA ligases, as well as
the adenylation domain of nonribosomal peptide
synthetases and firefly luciferases. The
adenylate-forming enzymes catalyze an ATP-dependent
two-step reaction to first activate a carboxylate
substrate as an adenylate and then transfer the
carboxylate to the pantetheine group of either coenzyme
A or an acyl-carrier protein. The active site of the
domain is located at the interface of a large N-terminal
subdomain and a smaller C-terminal subdomain.
Length = 338
Score = 158 bits (403), Expect = 9e-48
Identities = 76/235 (32%), Positives = 109/235 (46%), Gaps = 43/235 (18%)
Query: 4 RHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKI 63
I + + TVL+G PT+Y L + + + LSS + ++ G P SP L +
Sbjct: 84 ELIEQYRVTVLFGVPTLYDALAKAAEDRGYD-------LSSLRLLISGGEPLSPELLERF 136
Query: 64 RDTFGIKHLI---------------------------------VKVVDKKGNIVPMGMCG 90
+ G L V+VVD++G +P G G
Sbjct: 137 EERPGAPILEGYGLTETSVVTSTNPDSELKKPGTVGRPVPGVEVRVVDEEGKPLPPGEVG 196
Query: 91 EVCYRGYNVMLGYYGEENKILE---NDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGEN 147
E+ RG VM GY+ + D W+ +GD L E GY + GR KD+I GGEN
Sbjct: 197 ELVVRGPWVMKGYWNNPPETTAAATEDGWYRTGDLGYLDEEGYLYITGRSKDLIKVGGEN 256
Query: 148 IIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCK 202
+ P E+E VL HP V EA V GVPDE GE +VA + L+PGA +++K + +
Sbjct: 257 VYPAEVESVLLQHPAVAEAAVVGVPDEDRGERIVAFVVLRPGADALAEELKAHLR 311
>gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated.
Length = 513
Score = 162 bits (412), Expect = 1e-47
Identities = 85/237 (35%), Positives = 111/237 (46%), Gaps = 48/237 (20%)
Query: 6 IVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEE-LSSPVIALTAGAPCSPTLFNKIR 64
I E+ TVL G PTMY L+ P+ + E LSS +A+T A L +
Sbjct: 251 IETERITVLPGPPTMYNSLLQH--------PDRSAEDLSSLRLAVTGAASMPVALLERFE 302
Query: 65 DTFG------------------------------------IKHLIVKVVDKKGNIVPMGM 88
G I + K+V++ G VP+G
Sbjct: 303 SELGVDIVLTGYGLSEASGVTTFNRLDDDRKTVAGTIGTAIAGVENKIVNELGEEVPVGE 362
Query: 89 CGEVCYRGYNVMLGYYG---EENKILENDEWFPSGDFFILHENGYGQVVGRIKDIIIRGG 145
GE+ RG NVM GYY ++ D W +GD L E GY +V R KD+ I GG
Sbjct: 363 VGELLVRGPNVMKGYYDDPEATAAAIDADGWLHTGDLGRLDEEGYLYIVDRKKDMFIVGG 422
Query: 146 ENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCK 202
N+ P E+E VL HP V EA V GVPDERLGEV A + LKPGA LT++++ YC+
Sbjct: 423 FNVYPAEVEEVLYEHPAVAEAAVIGVPDERLGEVGKAYVVLKPGAELTEEELIAYCR 479
>gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called
cyclohex-1-ene-1-carboxylate:CoA ligase).
Cyclohexanecarboxylate-CoA ligase activates the
aliphatic ring compound, cyclohexanecarboxylate, for
degradation. It catalyzes the synthesis of
cyclohexanecarboxylate-CoA thioesters in a two-step
reaction involving the formation of
cyclohexanecarboxylate-AMP anhydride, followed by the
nucleophilic substitution of AMP by CoA.
Length = 437
Score = 159 bits (404), Expect = 7e-47
Identities = 76/239 (31%), Positives = 102/239 (42%), Gaps = 51/239 (21%)
Query: 6 IVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRD 65
I + T G DL+++ +L S + L GAP L + +
Sbjct: 178 IREHGVTFTMGATPFLADLLAAAD-------AAGPDLPSLRVFLCGGAPVPRELARRAAE 230
Query: 66 TFGIK----------HLI------------------------VKVVDKKGNIVPMGMCGE 91
G K L+ V++VD GN VP G GE
Sbjct: 231 ALGAKVVRAYGMTEVPLVTVGTPDDPDDKRAATDGRPVPGVEVRIVDDDGNDVPPGEEGE 290
Query: 92 VCYRGYNVMLGYYGEENKILENDE------WFPSGDFFILHENGYGQVVGRIKDIIIRGG 145
+ RG + LGY +N E WF +GD L +GY ++ GR KDIIIRGG
Sbjct: 291 LQVRGPQLFLGYLDPP----DNTEAFTDDGWFRTGDLGRLDADGYLRITGRKKDIIIRGG 346
Query: 146 ENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCKGK 204
ENI +EIE +L HP V E V +PDERLGE V A + PGASLT ++ + +
Sbjct: 347 ENISAREIEDLLLRHPAVAEVAVVAMPDERLGERVCAVVVPAPGASLTLAELTEHLAAQ 405
>gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar
proteins. Bile acid-Coenzyme A ligase catalyzes the
formation of bile acid-CoA conjugates in a two-step
reaction: the formation of a bile acid-AMP molecule as
an intermediate, followed by the formation of a bile
acid-CoA. This ligase requires a bile acid with a free
carboxyl group, ATP, Mg2+, and CoA for synthesis of the
final bile acid-CoA conjugate. The bile acid-CoA
ligation is believed to be the initial step in the bile
acid 7alpha-dehydroxylation pathway in the intestinal
bacterium Eubacterium sp.
Length = 342
Score = 154 bits (392), Expect = 5e-46
Identities = 75/238 (31%), Positives = 108/238 (45%), Gaps = 45/238 (18%)
Query: 4 RHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEE-LSSPVIALTAGAPCSPTLFNK 62
I + + T + PTM+ L+ +P+ A LSS + + AP L
Sbjct: 83 DLIERHRVTHTFLVPTMFQRLL--------RLPDFARYDLSSLRLIIYGAAPMPAELKRA 134
Query: 63 IRDTFGIK----------------------------------HLIVKVVDKKGNIVPMGM 88
+ + FG + V++VD+ G +P G
Sbjct: 135 MIEWFGPVFVQGYGMTETGPTTTLLSPEDWLRKLGSVGRPVPGVEVRIVDEDGRELPPGE 194
Query: 89 CGEVCYRGYNVMLGYYGEENKILE--NDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGE 146
GE+ RG VM GY+ E D W +GD L E+GY +V R KD+II GGE
Sbjct: 195 VGEIVVRGPAVMAGYWNRPEATAEALRDGWLHTGDLGYLDEDGYLYIVDRKKDMIISGGE 254
Query: 147 NIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCKGK 204
NI P E+E VL HP V + V GVPDE GE VVA + L+PGA+L +++ +C+ +
Sbjct: 255 NIYPAEVENVLLAHPAVADVAVIGVPDEEWGEAVVAVVVLRPGATLDAEELIAFCRER 312
>gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase
(FACL) similar to Fum10p of Gibberella moniliformis.
FACL catalyzes the formation of fatty acyl-CoA in a
two-step reaction: the formation of a fatty acyl-AMP
molecule as an intermediate, followed by the formation
of a fatty acyl-CoA. This is a required step before free
fatty acids can participate in most catabolic and
anabolic reactions. Fum10p is a fatty acid CoA ligase
involved in the synthesis of fumonisin, a polyketide
mycotoxin, in Gibberella moniliformis.
Length = 345
Score = 146 bits (371), Expect = 7e-43
Identities = 72/232 (31%), Positives = 104/232 (44%), Gaps = 41/232 (17%)
Query: 6 IVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRD 65
I K + T PT++ L L PN + +A AP P + +++
Sbjct: 87 IAKYRVTWYSAVPTIHQIL------LKTAKPNPGKPPPRLRFIRSASAPLPPAVLDRLEK 140
Query: 66 TFGIK-----------HLI----------------------VKVVDKKGNIVPMGMCGEV 92
FG+ H I V ++D G +P G GE+
Sbjct: 141 RFGVPVLEAYGMTEAAHQIASNPLPPLVRKPGSVGRPAGVEVAILDDDGRPLPPGQEGEI 200
Query: 93 CYRGYNVMLGYYGEENKILEN--DEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIP 150
RG NV GY E D WF +GD L E+GY + GRIK++I RGGE I P
Sbjct: 201 VIRGPNVTAGYLNNPEANREAFRDGWFRTGDLGYLDEDGYLFLTGRIKELINRGGEKISP 260
Query: 151 KEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCK 202
+E+E VL HP V EA V+GVPDE GE V A + L+ + +T ++++ + +
Sbjct: 261 REVEEVLLRHPAVAEAVVFGVPDELYGEEVAAAVVLRADSKVTIEELRDFAR 312
>gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase.
2,3-dihydroxybenzoate-AMP ligase activates
2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP
with the release of pyrophosphate. However, it can also
catalyze the ATP-PPi exchange for 2,3-DHB analogs, such
as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB
and 2,5-DHB, but with less efficiency. Proteins in this
family are the stand-alone adenylation components of
non-ribosomal peptide synthases (NRPSs) involved in the
biosynthesis of siderophores, which are low molecular
weight iron-chelating compounds synthesized by many
bacteria to aid in the acquisition of this vital trace
elements. In Escherichia coli, the
2,3-dihydroxybenzoate-AMP ligase is called EntE, the
adenylation component of the enterobactin NRPS system.
Length = 483
Score = 145 bits (368), Expect = 2e-41
Identities = 54/134 (40%), Positives = 82/134 (61%), Gaps = 3/134 (2%)
Query: 74 VKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYG--EENK-ILENDEWFPSGDFFILHENGY 130
+++VD +G VP G GE+ RG + GYY E N +D ++ +GD + +GY
Sbjct: 320 IRIVDDQGEPVPPGEVGELLTRGPYTIRGYYRAPEHNARAFTDDGFYRTGDLVRIDADGY 379
Query: 131 GQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGA 190
+VVGRIKD I RGGE I P+EIE +L +HP V +A V G+PDE LGE + A + + GA
Sbjct: 380 YRVVGRIKDQINRGGEKISPEEIENLLLSHPAVADAAVVGMPDEVLGERICAFVVPRGGA 439
Query: 191 SLTQDDIKTYCKGK 204
+ T +++ + + +
Sbjct: 440 APTLAELRAFLREQ 453
>gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar
to LC-FACS from Thermus thermophiles and Arabidopsis.
This family includes fatty acyl-CoA synthetases that can
activate medium to long-chain fatty acids. These enzymes
catalyze the ATP-dependent acylation of fatty acids in a
two-step reaction. The carboxylate substrate first
reacts with ATP to form an acyl-adenylate intermediate,
which then reacts with CoA to produce an acyl-CoA ester.
Fatty acyl-CoA synthetases are responsible for fatty
acid degradation as well as physiological regulation of
cellular functions via the production of fatty acyl-CoA
esters. The fatty acyl-CoA synthetase from Thermus
thermophiles in this family has been shown to catalyze
the long-chain fatty acid, myristoyl acid. Also included
in this family are acyl activating enzymes from
Arabidopsis, which contains a large number of proteins
from this family with up to 63 different genes, many of
which are uncharacterized.
Length = 520
Score = 142 bits (360), Expect = 5e-40
Identities = 82/254 (32%), Positives = 111/254 (43%), Gaps = 61/254 (24%)
Query: 2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFN 61
I I K K T L G PT+ L ++ L PV +TAGAP P +
Sbjct: 247 IYDLIEKHKVTHLCGAPTVLNMLANA-------PEADKLPLPRPVRVMTAGAPPPPAVIK 299
Query: 62 KIRDTF----------------------------------------GIKHL---IVKVVD 78
K+ + G++++ V VVD
Sbjct: 300 KMEELGFEVTHVYGLTETYGPITVCEWKPEWDALPAEERARLKARQGVRYVGLEEVDVVD 359
Query: 79 KKGNI-VP-----MGMCGEVCYRGYNVMLGYYGEENKILEN--DEWFPSGDFFILHENGY 130
+ VP +G E+ RG VM GYY E WF SGD ++H +GY
Sbjct: 360 PETMKDVPRDGKTIG---EIVMRGNTVMKGYYKNPEATEEAFAGGWFHSGDLAVVHPDGY 416
Query: 131 GQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGA 190
++ R KDIII GGENI E+E VL HP V+EA V PDE+ GE A + LKPGA
Sbjct: 417 IEIKDRSKDIIISGGENISSIEVEGVLYKHPAVLEAAVVARPDEKWGETPCAFVVLKPGA 476
Query: 191 SLTQDDIKTYCKGK 204
S+T++++ YC+ K
Sbjct: 477 SVTEEELIEYCREK 490
>gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated.
Length = 521
Score = 140 bits (356), Expect = 2e-39
Identities = 71/242 (29%), Positives = 109/242 (45%), Gaps = 51/242 (21%)
Query: 6 IVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRD 65
I E+ T + PT++ L+ P + + SS + + GA P L + ++
Sbjct: 251 IETERVTFFFAVPTIWQMLLK--APRAYFV-----DFSSLRLVIYGGAALPPALLREFKE 303
Query: 66 TFGIK---------------------HLI-----------------VKVVDKKGNIVPM- 86
FGI L ++VD G+ +P
Sbjct: 304 KFGIDLVQGYGMTETSPVVSVLPPEDQLPGQWTKRRSAGRPLPGVEARIVDDDGDELPPD 363
Query: 87 -GMCGEVCYRGYNVMLGYYGEEN---KILENDEWFPSGDFFILHENGYGQVVGRIKDIII 142
G GE+ RG +M GY+ + ++ W +GD + E+GY + RIKD+II
Sbjct: 364 GGEVGEIIVRGPWLMQGYWNRPEATAETIDGG-WLHTGDVGYIDEDGYLYITDRIKDVII 422
Query: 143 RGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCK 202
GGENI P+E+E L HP V E V GVPDE+ GE VA + LKPGA+L +++ + +
Sbjct: 423 SGGENIYPRELEDALYGHPAVAEVAVIGVPDEKWGERPVAVVVLKPGATLDAKELRAFLR 482
Query: 203 GK 204
G+
Sbjct: 483 GR 484
>gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated.
Length = 496
Score = 137 bits (346), Expect = 3e-38
Identities = 69/234 (29%), Positives = 101/234 (43%), Gaps = 42/234 (17%)
Query: 4 RHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPC-------- 55
I K K TV+ G PT++ LI+ + T L S GAPC
Sbjct: 232 SMIEKHKVTVVMGVPTIHQALINCSKFET-------TNLQSVRWFYNGGAPCPEELMREF 284
Query: 56 ----------------SPTLFNKIRDTFGIK---------HLIVKVVDKKGNIVPMGMCG 90
SPT+F + K +++D+ N V +G G
Sbjct: 285 IDRGFLFGQGFGMTETSPTVFMLSEEDARRKVGSIGKPVLFCDYELIDENKNKVEVGEVG 344
Query: 91 EVCYRGYNVMLGYYGEENKILE--NDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENI 148
E+ RG NVM Y+ + E D W +GD + E+G+ +VGR K++II GGENI
Sbjct: 345 ELLIRGPNVMKEYWNRPDATEETIQDGWLCTGDLARVDEDGFVYIVGRKKEMIISGGENI 404
Query: 149 IPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCK 202
P E+E V+ DV E V G + GE+ +A I K + L + D+ +C+
Sbjct: 405 YPLEVEQVINKLSDVYEVAVVGRQHVKWGEIPIAFIVKKSSSVLIEKDVIEHCR 458
>gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated.
Length = 523
Score = 133 bits (337), Expect = 1e-36
Identities = 55/132 (41%), Positives = 78/132 (59%), Gaps = 2/132 (1%)
Query: 75 KVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILE--NDEWFPSGDFFILHENGYGQ 132
+VVD GN V G GE+ +R +MLGY+ + K E WF SGD ++ E GY
Sbjct: 353 RVVDDDGNDVAPGEVGEIVHRSPQLMLGYWDDPEKTAEAFRGGWFHSGDLGVMDEEGYIT 412
Query: 133 VVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASL 192
VV R KD+I GGEN+ +E+E L THP V E V G+PD + E V A + K GA++
Sbjct: 413 VVDRKKDMIKTGGENVASREVEEALYTHPAVAEVAVIGLPDPKWIEAVTAVVVPKAGATV 472
Query: 193 TQDDIKTYCKGK 204
T+D++ +C+ +
Sbjct: 473 TEDELIAHCRAR 484
>gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme.
Length = 412
Score = 129 bits (326), Expect = 7e-36
Identities = 64/203 (31%), Positives = 86/203 (42%), Gaps = 47/203 (23%)
Query: 6 IVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRD 65
I K K TVLYG PT+ + L + +LSS + L+ G P P L ++R+
Sbjct: 217 IEKYKVTVLYGVPTLL-------RLLLKAPEEKKYDLSSLRLVLSGGEPLPPELLRRLRE 269
Query: 66 TFGIKHLI-----------------------------------VKVVDKKGNIVPMGMCG 90
FG L+ VKV+D++G VP G G
Sbjct: 270 RFGGVPLVNGYGPTETTVVATANLPGDPEVKPGSIGRPLPGVEVKVLDEEGEPVPPGEVG 329
Query: 91 EVCYRGYNVMLGYYGEE---NKILENDEWFP--SGDFFILHENGYGQVVGRIKDIIIRGG 145
E+C RG V GY + + D W +GD E+GY +++GR D + G
Sbjct: 330 ELCIRGPGVARGYLNDPELTAERFVEDGWGMYRTGDLGRWDEDGYLEILGRKDDQVKIRG 389
Query: 146 ENIIPKEIEYVLQTHPDVVEAQV 168
E I P EIE VL HP V EA V
Sbjct: 390 ERIEPGEIEAVLLEHPGVAEAAV 412
>gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS). MCS catalyzes the
formation of malonyl-CoA in a two-step reaction
consisting of the adenylation of malonate with ATP,
followed by malonyl transfer from malonyl-AMP to CoA.
Malonic acid and its derivatives are the building blocks
of polyketides and malonyl-CoA serves as the substrate
of polyketide synthases. Malonyl-CoA synthetase has
broad substrate tolerance and can activate a variety of
malonyl acid derivatives. MCS may play an important role
in biosynthesis of polyketides, the important secondary
metabolites with therapeutic and agrochemical utility.
Length = 430
Score = 128 bits (324), Expect = 2e-35
Identities = 63/233 (27%), Positives = 97/233 (41%), Gaps = 45/233 (19%)
Query: 11 CTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGIK 70
TV G PT+Y L+ E A + + ++ A + + + G
Sbjct: 178 ITVFMGVPTIYTRLLEHY----EFDDAAAAAARNLRLFVSGSAALPVPVLERWEERTG-- 231
Query: 71 HLI----------------------------------VKVVDKKGN-IVPMGMCGEVCYR 95
H + V++VD+ G + G GE+ R
Sbjct: 232 HTLLERYGMTETGMALSNPLDGERRPGTVGLPLPGVEVRIVDEDGGEPLAAGEVGEIQVR 291
Query: 96 GYNVMLGYYGEENKILE---NDEWFPSGDFFILHENGYGQVVGRIKDIIIR-GGENIIPK 151
G NV Y+ + E D WF +GD ++ E+GY +++GR D II+ GG +
Sbjct: 292 GPNVFSEYWNKPEATAEAFTEDGWFKTGDVGVVDEDGYYRILGRKSDDIIKSGGYKVSAL 351
Query: 152 EIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCKGK 204
EIE L HP V E V GVPD GE VVA + + GA+LT +++ + + K
Sbjct: 352 EIEEALLEHPGVAEVAVIGVPDPDWGEAVVAVVVPEAGAALTLAELRAWAREK 404
>gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 350
Score = 125 bits (316), Expect = 9e-35
Identities = 69/234 (29%), Positives = 102/234 (43%), Gaps = 35/234 (14%)
Query: 4 RHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNI------AEELSSPVIA--------- 48
+H+ KE+ T G PT + L+ E+ P++ L + I
Sbjct: 85 KHLAKERITGFAGVPTTWAQLLRLDPLAREDFPSLRYLTNAGGALPAKTILQLRRAFPDA 144
Query: 49 -------LTAGAPCS---PTLFNKIRDTFG--IKHLIVKVVDKKGNIVPMGMCGEVCYRG 96
LT + P ++ D+ G I ++ + VVD+ GN G GE+ +RG
Sbjct: 145 KLFSMYGLTEAFRSTYLPPEELDRRPDSIGKAIPNVELWVVDEDGNRCAPGEVGELVHRG 204
Query: 97 YNVMLGYYG--EENK-----ILENDE-WFPSGDFFILHENGYGQVVGRIKDIIIRGGENI 148
NVM GY+ E E +GD + E GY VGR D+I G +
Sbjct: 205 ANVMKGYWNDPEATAERLRPGPLPGEIVLYTGDLVRMDEEGYLYFVGRKDDMIKTRGYRV 264
Query: 149 IPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCK 202
P EIE V+ HP V EA V GVPD LG+ +VA + G SL + ++ +C+
Sbjct: 265 SPTEIEEVICAHPLVAEAAVIGVPDPLLGQAIVAVVVSADGESLDEKELLKHCR 318
>gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting
insects and 4-Coumarate-CoA Ligase (4CL). This family
contains two functionally unique groups of proteins; one
group is insect firefly luciferases and the other is
plant 4-coumarate:coenzyme A ligases. However, they
share significant sequence similarity in spite of their
functional diversity. Luciferase catalyzes the
production of light in the presence of MgATP, molecular
oxygen, and luciferin. In the first step, luciferin is
activated by acylation of its carboxylate group with
ATP, resulting in an enzyme-bound luciferyl adenylate.
In the second step, luciferyl adenylate reacts with
molecular oxygen, producing an enzyme-bound excited
state product (Luc=O*) and releasing AMP. This
excited-state product then decays to the ground state
(Luc=O), emitting a quantum of visible light.
4-coumarate:coenzyme A ligase is a key enzyme in the
phenylpropanoid metabolic pathway for monolignol and
flavonoid biosynthesis. It catalyzes the synthesis of
hydroxycinnamate-CoA thioesters in a two-step reaction,
involving the formation of hydroxycinnamate-AMP
anhydride and then the nucleophilic substitution of AMP
by CoA. The phenylpropanoid pathway is one of the most
important secondary metabolism pathways in plants and
hydroxycinnamate-CoA thioesters are the precursors of
lignin and other important phenylpropanoids.
Length = 487
Score = 126 bits (320), Expect = 1e-34
Identities = 69/238 (28%), Positives = 104/238 (43%), Gaps = 44/238 (18%)
Query: 4 RHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKI 63
+ I K K T L+ P + V L S PL ++ +LSS + + AP S L ++
Sbjct: 231 KLIEKYKVTSLFLVPPIAVALAKS--PLVDK-----YDLSSLRVIFSGAAPLSKELQEEL 283
Query: 64 RDTFGIKHLI---------------------------------VKVVDKKGN-IVPMGMC 89
R F + K+VD+ G +
Sbjct: 284 RKRFPNTTIKQGYGMTETGPATTLTPPGDEKPGSVGRLVPNVEAKIVDEDGGKSLGPNER 343
Query: 90 GEVCYRGYNVMLGYYG--EENKILENDE-WFPSGDFFILHENGYGQVVGRIKDIIIRGGE 146
GE+C +G +M GY E K +++ W +GD E+G +V R K++I G
Sbjct: 344 GELCVKGPQIMKGYLNNPEATKETIDEDGWLHTGDIGYFDEDGNFYIVDRKKELIKYKGY 403
Query: 147 NIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCKGK 204
+ P E+E VL HP V +A V G+PDE GE+ A + LKPG+ LT+ ++K Y K
Sbjct: 404 QVPPAELEAVLLEHPKVADAAVIGIPDEVAGELPRAYVVLKPGSKLTEQEVKDYVAKK 461
>gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed.
Length = 547
Score = 121 bits (304), Expect = 4e-32
Identities = 56/131 (42%), Positives = 79/131 (60%), Gaps = 4/131 (3%)
Query: 74 VKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEE---NKILENDEWFPSGDFFILHENGY 130
+KVVD+ +P G GE RG NV +GY E + L+ + W+ SGD + E GY
Sbjct: 366 IKVVDEARKTLPPGCEGEEASRGPNVFMGYLDEPELTARALDEEGWYYSGDLCRMDEAGY 425
Query: 131 GQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELK-PG 189
++ GR KDII+RGGENI +E+E +L HP + +A V +PDERLGE A + LK P
Sbjct: 426 IKITGRKKDIIVRGGENISSREVEDILLQHPKIHDACVVAMPDERLGERSCAYVVLKAPH 485
Query: 190 ASLTQDDIKTY 200
SLT +++ +
Sbjct: 486 HSLTLEEVVAF 496
>gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as
O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or
MenE). O-succinylbenzoic acid-CoA synthase catalyzes
the coenzyme A (CoA)- and ATP-dependent conversion of
o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The
reaction is the fourth step of the biosynthesis pathway
of menaquinone (vitamin K2). In certain bacteria,
menaquinone is used during fumarate reduction in
anaerobic respiration. In cyanobacteria, the product of
the menaquinone pathway is phylloquinone
(2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used
exclusively as an electron transfer cofactor in
Photosystem 1. In green sulfur bacteria and
heliobacteria, menaquinones are used as loosely bound
secondary electron acceptors in the photosynthetic
reaction center.
Length = 407
Score = 119 bits (300), Expect = 5e-32
Identities = 47/117 (40%), Positives = 66/117 (56%), Gaps = 3/117 (2%)
Query: 90 GEVCYRGYNVMLGYYGEE--NKILENDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGEN 147
GE+ RG ++ LGY + L+ D WF +GD L GY V+GR D+II GGEN
Sbjct: 261 GEILVRGPSLFLGYLPQGGLTPPLDEDGWFHTGDLGYLDAEGYLYVLGRRDDLIISGGEN 320
Query: 148 IIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCKGK 204
I P+EIE VL HP V EA V GVPD+ G+ VA + ++ ++++ + K
Sbjct: 321 IYPEEIEAVLLQHPAVEEAAVVGVPDDEWGQRPVAFVVPN-DDPVSVEELQAFLADK 376
>gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated.
Length = 562
Score = 120 bits (302), Expect = 1e-31
Identities = 50/133 (37%), Positives = 83/133 (62%), Gaps = 3/133 (2%)
Query: 73 IVKVVDKKGNIVPMGMCGEVCYRGYNVMLGYY---GEENKILENDEWFPSGDFFILHENG 129
+ KV+D GN +P+G GE+C +G VM GY+ ++IL++D W +GD ++ E+G
Sbjct: 388 LCKVIDDDGNELPLGEVGELCVKGPQVMKGYWQRPEATDEILDSDGWLKTGDIALIQEDG 447
Query: 130 YGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPG 189
Y ++V R KD+I+ G N+ P E+E VL P V++ GVPDE+ GE + + +KPG
Sbjct: 448 YMRIVDRKKDMILVSGFNVYPNELEDVLAALPGVLQCAAIGVPDEKSGEAIKVFVVVKPG 507
Query: 190 ASLTQDDIKTYCK 202
+LT++ + + +
Sbjct: 508 ETLTKEQVMEHMR 520
>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid
CoA ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions. Members of this
family include DitJ from Pseudomonas and similar
proteins.
Length = 421
Score = 118 bits (297), Expect = 1e-31
Identities = 56/170 (32%), Positives = 79/170 (46%), Gaps = 14/170 (8%)
Query: 41 ELSSPVIA-LTAGAPCSPTLFNKIRDTFGIKHLIVKVVDKKGNIVPMGMCGEVCYR---G 96
E P+IA P S + R V++VD+ G VP G GE+ R
Sbjct: 230 ETGVPIIAPGDPAPPGS---CGRPRPGVE-----VRIVDEDGREVPPGEVGELVVRPRRP 281
Query: 97 YNVMLGYYG--EENKILENDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIE 154
+ + GYYG E + WF +GD E+G+ V R KD I R GENI E+E
Sbjct: 282 WAMFKGYYGMPEATAKAWRNGWFHTGDRGRRDEDGFLYFVDRKKDAIRRRGENISSYEVE 341
Query: 155 YVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCKGK 204
+ HP V EA V VP E + V A + L+PG +L + + +C+ +
Sbjct: 342 AAILAHPAVAEAAVVAVPSELGEDEVKAVVVLRPGETLDPEALLEFCRDR 391
>gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 359
Score = 117 bits (294), Expect = 2e-31
Identities = 63/233 (27%), Positives = 94/233 (40%), Gaps = 48/233 (20%)
Query: 10 KCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGI 69
+ T+L PT+ L+ ++P ++SS ALT AP + + G+
Sbjct: 97 RVTLLSAVPTVLAALL--------QVPLGDADISSLRYALTGAAPLPVEVARRFEAVTGV 148
Query: 70 K---------------------------------HLIVKVVDKKGNIVPMGMC-----GE 91
+ V+V C G
Sbjct: 149 PVVEGYGMTEGTGVSAINPRGGPRRPGSVGLRLPYTRVRVAKLDAGGALGRDCAPGEVGV 208
Query: 92 VCYRGYNVMLGYY-GEENKILENDE-WFPSGDFFILHENGYGQVVGRIKDIIIRGGENII 149
+ RG NV GY N ++ W +GD + +GY + GR KD+IIRGG NI
Sbjct: 209 LAIRGPNVFPGYLNDAHNAGARLEDGWLNTGDLGRIDADGYLWLTGRAKDLIIRGGHNID 268
Query: 150 PKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCK 202
P+ IE L HP V A G PD GE+ VA ++LKPGA++T+ ++ + K
Sbjct: 269 PQMIEEALLRHPAVALAAAVGRPDAYAGELPVAYVQLKPGATVTEGELLAFVK 321
>gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated.
Length = 545
Score = 118 bits (297), Expect = 4e-31
Identities = 52/115 (45%), Positives = 68/115 (59%), Gaps = 2/115 (1%)
Query: 90 GEVCYRGYNVMLGYYGEENKILE--NDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGEN 147
GE+ +RG VM GY E WF +GD +LH +GY ++ R KDIII GGEN
Sbjct: 389 GEIMFRGNIVMKGYLKNPKATEEAFAGGWFHTGDLAVLHPDGYIKIKDRSKDIIISGGEN 448
Query: 148 IIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCK 202
I E+E VL HP V+ A V PD + GEV A +ELK GAS T+++I +C+
Sbjct: 449 ISSIEVEDVLYRHPAVLVAAVVAKPDPKWGEVPCAFVELKDGASATEEEIIAHCR 503
>gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated.
Length = 497
Score = 116 bits (293), Expect = 9e-31
Identities = 55/138 (39%), Positives = 80/138 (57%), Gaps = 2/138 (1%)
Query: 69 IKHLIVKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILEN--DEWFPSGDFFILH 126
+ H+ +++ D G +P M GE+C RG V GY+ + K E +WF SGD L
Sbjct: 325 LAHVEIRIADGAGRWLPPNMKGEICMRGPKVTKGYWKDPEKTAEAFYGDWFRSGDVGYLD 384
Query: 127 ENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIEL 186
E G+ + R KD+II GGENI E+E V+ P+V EA V GV D+R GE + A + L
Sbjct: 385 EEGFLYLTDRKKDMIISGGENIASSEVERVIYELPEVAEAAVIGVHDDRWGERITAVVVL 444
Query: 187 KPGASLTQDDIKTYCKGK 204
PGA+LT + + +C+ +
Sbjct: 445 NPGATLTLEALDRHCRQR 462
>gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed.
Length = 547
Score = 117 bits (294), Expect = 1e-30
Identities = 49/132 (37%), Positives = 72/132 (54%), Gaps = 1/132 (0%)
Query: 74 VKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILENDE-WFPSGDFFILHENGYGQ 132
V+VVD G +P G G + RG + GY + + WF +GD + +GY +
Sbjct: 377 VRVVDADGAPLPAGQIGRLQVRGCSNFGGYLKRPQLNGTDADGWFDTGDLARIDADGYIR 436
Query: 133 VVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASL 192
+ GR KD+IIRGGENI EIE +L HP + + + PDERLGE A + +PG SL
Sbjct: 437 ISGRSKDVIIRGGENIPVVEIEALLYRHPAIAQVAIVAYPDERLGERACAFVVPRPGQSL 496
Query: 193 TQDDIKTYCKGK 204
+++ + K +
Sbjct: 497 DFEEMVEFLKAQ 508
>gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated.
Length = 488
Score = 116 bits (291), Expect = 2e-30
Identities = 57/164 (34%), Positives = 79/164 (48%), Gaps = 18/164 (10%)
Query: 46 VIALTAGAP--CSPTLFNKIRDTFGIKHLIVKVVDKKGNIVPMGMCGEVCYRGYNVMLGY 103
VI AGA +PT+ +VVD +GN P G+ GE+ RG N+ GY
Sbjct: 300 VIRAKAGAAGIPTPTVQ-------------TRVVDDQGNDCPAGVPGELLLRGPNLSPGY 346
Query: 104 YG---EENKILENDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTH 160
+ + D WF +GD +G+ VV R KD+ I GGEN+ P EIE VL H
Sbjct: 347 WRRPQATARAFTGDGWFRTGDIARRDADGFFWVVDRKKDMFISGGENVYPAEIEAVLADH 406
Query: 161 PDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCKGK 204
P + E V G+ D + GEV I GA L + I+++ +
Sbjct: 407 PGIRECAVVGMADAQWGEVGYLAIVPADGAPLDLERIRSHLSTR 450
>gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated.
Length = 632
Score = 115 bits (289), Expect = 7e-30
Identities = 66/233 (28%), Positives = 98/233 (42%), Gaps = 48/233 (20%)
Query: 10 KCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGI 69
+ L G PT+Y L+ ++P ++SS AL AP +F + G+
Sbjct: 308 RINFLSGVPTVYAALL--------QVPVDGHDISSLRYALCGAAPLPVEVFRRFEAATGV 359
Query: 70 K-----------------------------------HLIVKVVDKKGNIV---PMGMCGE 91
+ + V ++D G + + G
Sbjct: 360 RIVEGYGLTEATCVSSVNPPDGERRIGSVGLRLPYQRVRVVILDDAGRYLRDCAVDEVGV 419
Query: 92 VCYRGYNVMLGYY-GEENKILENDE-WFPSGDFFILHENGYGQVVGRIKDIIIRGGENII 149
+C G NV GY NK L ++ W +GD + +GY + GR KD+IIRGG NI
Sbjct: 420 LCIAGPNVFSGYLEAAHNKGLWLEDGWLNTGDLGRIDADGYFWLTGRAKDLIIRGGHNID 479
Query: 150 PKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCK 202
P IE L HP V A G PD GE+ VA ++LKPGAS T+ ++ + +
Sbjct: 480 PAAIEEALLRHPAVALAAAVGRPDAHAGELPVAYVQLKPGASATEAELLAFAR 532
>gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated.
Length = 573
Score = 113 bits (284), Expect = 3e-29
Identities = 54/136 (39%), Positives = 81/136 (59%), Gaps = 4/136 (2%)
Query: 73 IVKVVDKK--GNIVPMGMCGEVCYRGYNVMLGYYG--EENKILENDEWFPSGDFFILHEN 128
V++VD + +P G GE+ RG V GY+ EE D WF +GD ++ E+
Sbjct: 399 EVRIVDPEDPDETMPDGEEGELLVRGPQVFKGYWNRPEETAKSFLDGWFRTGDVVVMEED 458
Query: 129 GYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKP 188
G+ ++V RIK++II GG N+ P E+E VL+ HP V +A V G+P E E VVA + L+P
Sbjct: 459 GFIRIVDRIKELIITGGFNVYPAEVEEVLREHPGVEDAAVVGLPREDGSEEVVAAVVLEP 518
Query: 189 GASLTQDDIKTYCKGK 204
GA+L + ++ YC+
Sbjct: 519 GAALDPEGLRAYCREH 534
>gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated.
Length = 557
Score = 113 bits (284), Expect = 3e-29
Identities = 63/165 (38%), Positives = 93/165 (56%), Gaps = 12/165 (7%)
Query: 43 SSPVIALTAGAPCSPTLFNKIRDTFG--IKHLIVKVVDKKGNIVPMGMCGEVCYRGYNVM 100
+SPV A C+P + T G + V + D GN +P+G GE+C RG VM
Sbjct: 364 TSPV------ATCNPVDATEFSGTIGLPLPSTEVSIRDDDGNDLPLGEPGEICIRGPQVM 417
Query: 101 LGYYG---EENKILENDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVL 157
GY+ E K++ D +F +GD ++ E GY ++V R KD+I+ G N+ P EIE V+
Sbjct: 418 AGYWNRPDETAKVMTADGFFRTGDVGVMDERGYTKIVDRKKDMILVSGFNVYPNEIEEVV 477
Query: 158 QTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCK 202
+HP V+E GVPDE GE V + +K +LT++D+K +CK
Sbjct: 478 ASHPGVLEVAAVGVPDEHSGEAVKLFV-VKKDPALTEEDVKAFCK 521
>gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated.
Length = 524
Score = 112 bits (283), Expect = 4e-29
Identities = 52/126 (41%), Positives = 74/126 (58%), Gaps = 2/126 (1%)
Query: 74 VKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYG--EENKILENDEWFPSGDFFILHENGYG 131
V ++D+ G V G GE+C RG VM GY+ EE D W +GD E+G+
Sbjct: 350 VALLDEDGREVAQGEVGEICVRGPLVMDGYWNRPEETAEAFRDGWLHTGDVAREDEDGFY 409
Query: 132 QVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGAS 191
+V R KD+I+ GG N+ P+E+E VL HP V + V GVPDE+ GE V A + L+PGA+
Sbjct: 410 YIVDRKKDMIVTGGFNVFPREVEDVLAEHPAVAQVAVIGVPDEKWGEAVTAVVVLRPGAA 469
Query: 192 LTQDDI 197
+ ++
Sbjct: 470 VDAAEL 475
>gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated.
Length = 542
Score = 111 bits (280), Expect = 1e-28
Identities = 57/134 (42%), Positives = 75/134 (55%), Gaps = 3/134 (2%)
Query: 74 VKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILENDE--WFPSGDFFILHENGYG 131
+VVD+ N VP+G GE+ YR +M GY+ E WF SGD E GY
Sbjct: 356 ARVVDENMNDVPVGEVGEIVYRAPTLMSGYWNNPEATAEAFAGGWFHSGDLVRQDEEGYV 415
Query: 132 QVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPG-A 190
VV R KD+II GGENI E+E VL +HPD+VE V G DE+ GEV VA ++ A
Sbjct: 416 WVVDRKKDMIISGGENIYCAEVENVLASHPDIVEVAVIGRADEKWGEVPVAVAAVRNDDA 475
Query: 191 SLTQDDIKTYCKGK 204
+LT +D+ + +
Sbjct: 476 ALTLEDLAEFLTDR 489
>gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated.
Length = 528
Score = 110 bits (278), Expect = 2e-28
Identities = 53/133 (39%), Positives = 70/133 (52%), Gaps = 2/133 (1%)
Query: 74 VKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYG--EENKILENDEWFPSGDFFILHENGYG 131
V++ D +G +P G GE+C G V GYY E N D WF +GD L G+
Sbjct: 351 VQIQDDEGRELPPGETGEICVIGPAVFAGYYNNPEANAKAFRDGWFRTGDLGHLDARGFL 410
Query: 132 QVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGAS 191
+ GR D+ I GG N+ P+EIE L THP V E V GVPD GEV VA + GA
Sbjct: 411 YITGRASDMYISGGSNVYPREIEEKLLTHPAVSEVAVLGVPDPVWGEVGVAVCVARDGAP 470
Query: 192 LTQDDIKTYCKGK 204
+ + ++ + GK
Sbjct: 471 VDEAELLAWLDGK 483
>gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase;
Provisional.
Length = 483
Score = 110 bits (276), Expect = 2e-28
Identities = 54/128 (42%), Positives = 75/128 (58%), Gaps = 4/128 (3%)
Query: 79 KKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILEN--DEWFPSGDFFILHENGYGQVVGR 136
K G +VP GE+ +G NV GY E+ E D WF +GD L E G+ V+ R
Sbjct: 322 KDGVVVPPFEEGEIVVKGPNVTKGYLNREDATRETFQDGWFKTGDIGYLDEEGFLYVLDR 381
Query: 137 IKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDD 196
D+II GGENI P EIE VL +HP V EA V GVPD++ G+V VA + +T+++
Sbjct: 382 RSDLIISGGENIYPAEIEEVLLSHPGVAEAGVVGVPDDKWGQVPVAFVVK--SGEVTEEE 439
Query: 197 IKTYCKGK 204
++ +C+ K
Sbjct: 440 LRHFCEEK 447
>gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase.
The members of this family are putative long-chain fatty
acyl-CoA synthetases, which catalyze the ATP-dependent
activation of fatty acids in a two-step reaction. The
carboxylate substrate first reacts with ATP to form an
acyl-adenylate intermediate, which then reacts with CoA
to produce an acyl-CoA ester. Fatty acyl-CoA synthetases
are responsible for fatty acid degradation as well as
physiological regulation of cellular functions via the
production of fatty acyl-CoA esters.
Length = 430
Score = 107 bits (269), Expect = 1e-27
Identities = 65/242 (26%), Positives = 101/242 (41%), Gaps = 50/242 (20%)
Query: 4 RHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAE-ELSSPVIALTAGAPCSPTLFNK 62
R I + + T TM VDL++ P A+ +LSS + GA P + +
Sbjct: 167 RAIERYRVTHWTNIVTMVVDLLAH--------PRFADYDLSSLKVVGGGGAALPPAVAER 218
Query: 63 IRDTFGIKHLI--------------------------------VKVVD-KKGNIVPMGMC 89
++ G+ + +V+D + G +P G
Sbjct: 219 LKALTGLLYEEGYGLTETHTCTHFNPPDRPKPQCLGIPVFGTDARVIDPETGEELPPGEE 278
Query: 90 GEVCYRGYNVMLGYYGEEN------KILENDEWFPSGDFFILHENGYGQVVGRIKDIIIR 143
GE+ RG V GY+ L+ +F +GD + E GY + R+K +I
Sbjct: 279 GEIVVRGPQVFKGYWNRPEATAESFIELDGKRFFRTGDLGYIDEEGYFFFLDRVKRMINV 338
Query: 144 GGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGA--SLTQDDIKTYC 201
G + P E+E +L HP V+E V G PD R GEVV A + LKP +T++DI +C
Sbjct: 339 SGYKVWPAEVEALLYQHPAVLEVCVIGRPDPRRGEVVKAFVVLKPDYRGKVTEEDIIEWC 398
Query: 202 KG 203
+
Sbjct: 399 RE 400
>gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional.
Length = 562
Score = 107 bits (268), Expect = 4e-27
Identities = 51/131 (38%), Positives = 77/131 (58%), Gaps = 4/131 (3%)
Query: 75 KVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEEN---KILENDEWFPSGDFFILHENGYG 131
KV+D GN +P+G GE+C +G VM GY+ + + L+ + WF +GD ++ +G+
Sbjct: 398 KVIDDDGNELPLGERGELCIKGPQVMKGYWQQPEATAEALDAEGWFKTGDIAVIDPDGFV 457
Query: 132 QVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGAS 191
++V R KD+II G N+ P EIE V+ HP V GVPDER GE V + +
Sbjct: 458 RIVDRKKDLIIVSGFNVYPNEIEDVVMAHPKVANCAAIGVPDERSGEAVKLFVVARDP-G 516
Query: 192 LTQDDIKTYCK 202
L+ +++K YCK
Sbjct: 517 LSVEELKAYCK 527
>gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and
4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase).
Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A
ligase catalyze the first activating step for benzoate
and 4-hydroxybenzoate catabolic pathways, respectively.
Although these two enzymes share very high sequence
homology, they have their own substrate preference. The
reaction proceeds via a two-step process; the first
ATP-dependent step forms the substrate-AMP intermediate,
while the second step forms the acyl-CoA ester,
releasing the AMP. Aromatic compounds represent the
second most abundant class of organic carbon compounds
after carbohydrates. Some bacteria can use benzoic acid
or benzenoid compounds as the sole source of carbon and
energy through degradation. Benzoate CoA ligase and
4-hydroxybenzoate-Coenzyme A ligase are key enzymes of
this process.
Length = 506
Score = 106 bits (266), Expect = 6e-27
Identities = 64/240 (26%), Positives = 102/240 (42%), Gaps = 44/240 (18%)
Query: 2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFN 61
+ I + K TV +G PT+Y ++++ E P +LSS + ++AG +
Sbjct: 244 VFATIERYKPTVFFGVPTLYAAMLAA-----PEKPE--RDLSSLRLCVSAGEALPAEIGY 296
Query: 62 KIRDTFGIK-----------HLI---------------------VKVVDKKGNIVPMGMC 89
+ ++ FG++ H+ VK+VD+ G V G
Sbjct: 297 RWKELFGLEILDGIGSTEMLHIFLSNRPGAVKYGTSGKPVPGYEVKLVDEDGEEVADGEI 356
Query: 90 GEVCYRGYNVMLGYYGEENKILEN--DEWFPSGDFFILHENGYGQVVGRIKDIIIRGGEN 147
GE+ RG + GY+ K E EW +GD + E+GY GR D++ G
Sbjct: 357 GELWVRGDSSAAGYWNRREKTRETFVGEWTRTGDKYYRDEDGYYWYCGRSDDMLKVSGIW 416
Query: 148 IIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPG---ASLTQDDIKTYCKGK 204
+ P E+E L HP V+EA V G DE A + LK G + + ++K + K K
Sbjct: 417 VSPFEVEDALLQHPAVLEAAVVGAEDEDGLTKPKAFVVLKDGYQPSPELETELKDFVKDK 476
>gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase;
Provisional.
Length = 542
Score = 105 bits (264), Expect = 1e-26
Identities = 54/164 (32%), Positives = 83/164 (50%), Gaps = 11/164 (6%)
Query: 46 VIALTAGAPCSPTLFNKIRDTFGIKHLIVKVVDKKGNIVPMGMCGEVCYRG---YNVMLG 102
VIA+T G+ P ++ F +VVD+ +P G GE+ R + G
Sbjct: 332 VIAVTHGSQ-RPGSMGRLAPGF-----EARVVDEHDQELPDGEPGELLLRADEPFAFATG 385
Query: 103 YYGEENKILE--NDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTH 160
Y+G K +E + WF +GD + +G+ + V RIKD I R GENI E+E VL +H
Sbjct: 386 YFGMPEKTVEAWRNLWFHTGDRVVRDADGWFRFVDRIKDAIRRRGENISSFEVEQVLLSH 445
Query: 161 PDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCKGK 204
P V A V+ VP E + V+A + L+ G +L + +C+ +
Sbjct: 446 PAVAAAAVFPVPSELGEDEVMAAVVLRDGTALEPVALVRHCEPR 489
>gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL). CBAL catalyzes
the conversion of 4-chlorobenzoate (4-CB) to
4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step
adenylation and thioester-forming reactions.
4-Chlorobenzoate (4-CBA) is an environmental pollutant
derived from microbial breakdown of aromatic pollutants,
such as polychlorinated biphenyls (PCBs), DDT, and
certain herbicides. The 4-CBA degrading pathway converts
4-CBA to the metabolite 4-hydroxybezoate (4-HBA),
allowing some soil-dwelling microbes to utilize 4-CBA as
an alternate carbon source. This pathway consists of
three chemical steps catalyzed by 4-CBA-CoA ligase,
4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in
sequential reactions.
Length = 495
Score = 105 bits (263), Expect = 2e-26
Identities = 59/203 (29%), Positives = 92/203 (45%), Gaps = 32/203 (15%)
Query: 2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFN 61
+++H+ EK +YGT TE M ++ G P F+
Sbjct: 289 VNQHLPGEK-VNIYGT--------------TEAMNSLYMR------DPRTGTEMRPGFFS 327
Query: 62 KIRDTFGIKHLIVKVVDKKGNIVPMGMCGE-VCYRGYNVMLGYYGEENKILEN--DEWFP 118
++R IV++ +P G GE V GY + E D W+
Sbjct: 328 EVR--------IVRIGGSPDEALPNGEEGELVVAAADATFTGYLNQPQATAEKLQDGWYR 379
Query: 119 SGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGE 178
+ D ++ +G +++GR+ D+II GGENI P E+E VL P V E V G+PDER G+
Sbjct: 380 TSDVAVVDPSGTVRILGRVDDMIISGGENIHPSEVERVLGRAPGVTEVVVIGLPDERWGQ 439
Query: 179 VVVANIELKPGASLTQDDIKTYC 201
V A + + G +L+ D + T+C
Sbjct: 440 SVTACVVPREGETLSADALDTFC 462
>gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated.
Length = 560
Score = 104 bits (262), Expect = 3e-26
Identities = 52/131 (39%), Positives = 77/131 (58%), Gaps = 3/131 (2%)
Query: 74 VKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYG--EENKILENDEWFPSGDFFILHENGYG 131
+K+VD GN VP G GE+ +G VMLGY+ E + D W +GD ++ E G+
Sbjct: 389 IKLVDDDGNEVPPGEPGELWVKGPQVMLGYWQRPEATDEVIKDGWLATGDIAVMDEEGFL 448
Query: 132 QVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGAS 191
++V R KD+I+ G N+ P EIE V+ HP V+E GVP E GE V + +K S
Sbjct: 449 RIVDRKKDMILVSGFNVYPNEIEDVVMLHPKVLEVAAVGVPSEVSGEAVKIFV-VKKDPS 507
Query: 192 LTQDDIKTYCK 202
LT++++ T+C+
Sbjct: 508 LTEEELITHCR 518
>gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated.
Length = 534
Score = 104 bits (260), Expect = 4e-26
Identities = 52/133 (39%), Positives = 76/133 (57%), Gaps = 2/133 (1%)
Query: 74 VKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILEN--DEWFPSGDFFILHENGYG 131
+++V G +P G GEV RG V+ GY G+ N D W +GD L G
Sbjct: 365 IRIVGSDGLPLPAGAVGEVWLRGTTVVRGYLGDPTITAANFTDGWLRTGDLGSLSAAGDL 424
Query: 132 QVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGAS 191
+ GRIK++I RGGE I P+ +E VL +HP+V+EA V+GVPD+ GE V A I + A
Sbjct: 425 SIRGRIKELINRGGEKISPERVEGVLASHPNVMEAAVFGVPDQLYGEAVAAVIVPRESAP 484
Query: 192 LTQDDIKTYCKGK 204
T +++ +C+ +
Sbjct: 485 PTAEELVQFCRER 497
>gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated.
Length = 504
Score = 101 bits (253), Expect = 4e-25
Identities = 54/138 (39%), Positives = 74/138 (53%), Gaps = 10/138 (7%)
Query: 74 VKVVDKK-GNIVPMGMCGEVCYRGYNVMLGYY------GEENKILENDEWFPSGDFFILH 126
++V D + G +P G G + +G NV GY+ EE D +F +GD +
Sbjct: 332 LRVTDPETGAELPPGEIGMIEVKGPNVFKGYWRMPEKTAEE---FRADGFFITGDLGKID 388
Query: 127 ENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIEL 186
E GY +VGR KD+II GG N+ PKE+E + P VVE+ V GVP GE V A +
Sbjct: 389 ERGYVHIVGRGKDLIISGGYNVYPKEVEGEIDELPGVVESAVIGVPHPDFGEGVTAVVVP 448
Query: 187 KPGASLTQDDIKTYCKGK 204
KPGA+L + I KG+
Sbjct: 449 KPGAALDEAAILAALKGR 466
>gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase;
Provisional.
Length = 560
Score = 101 bits (253), Expect = 4e-25
Identities = 48/128 (37%), Positives = 74/128 (57%), Gaps = 4/128 (3%)
Query: 78 DKKGNIVPMGMCGEVCYRGYNVMLGYYG---EENKILENDEWFPSGDFFILHENGYGQVV 134
D G ++ +G GE+C +G VM GY+ E K+++ D W +GD + E G+ +V
Sbjct: 397 DDAGTVLAIGEIGELCIKGPQVMKGYWKRPEETAKVMDADGWLHTGDIARMDEQGFVYIV 456
Query: 135 GRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQ 194
R KD+I+ G N+ P EIE V+ P V+E GVPDE+ GE+V I +K +LT
Sbjct: 457 DRKKDMILVSGFNVYPNEIEDVIAMMPGVLEVAAVGVPDEKSGEIVKVVI-VKKDPALTA 515
Query: 195 DDIKTYCK 202
+D+K + +
Sbjct: 516 EDVKAHAR 523
>gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase.
Members of this protein family are
cyclohexanecarboxylate-CoA ligase. This enzyme prepares
the aliphatic ring compound, cyclohexanecarboxylate, for
dehydrogenation and then degradation by a pathway also
used in benzoyl-CoA degradation in Rhodopseudomonas
palustris.
Length = 538
Score = 101 bits (253), Expect = 4e-25
Identities = 49/132 (37%), Positives = 68/132 (51%), Gaps = 1/132 (0%)
Query: 74 VKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEEN-KILENDEWFPSGDFFILHENGYGQ 132
VKV+D G + G G + RG + GY + + + WF +GD GY +
Sbjct: 375 VKVIDANGAKLSQGETGRLLVRGCSNFGGYLKRPHLNSTDAEGWFDTGDLAFQDAEGYIR 434
Query: 133 VVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASL 192
+ GR KD+IIRGGENI EIE +L HP V + + PDERLGE A + KPG +L
Sbjct: 435 INGRSKDVIIRGGENIPVVEIENLLYQHPAVAQVAIVAYPDERLGERACAVVVPKPGCTL 494
Query: 193 TQDDIKTYCKGK 204
+ + K +
Sbjct: 495 DFAAMVAFLKAQ 506
>gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated.
Length = 549
Score = 99.2 bits (248), Expect = 2e-24
Identities = 74/234 (31%), Positives = 101/234 (43%), Gaps = 39/234 (16%)
Query: 4 RHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKI 63
I K K T L P M +S I L E+ + SS I +G+ SP L +
Sbjct: 289 EDIAKHKATALVVVPVM----LSRILDLGPEVLA-KYDTSSLKIIFVSGSALSPELATRA 343
Query: 64 RDTFG---------------------------------IKHLIVKVVDKKGNIVPMGMCG 90
+ FG K + VK++D+ GN VP G+ G
Sbjct: 344 LEAFGPVLYNLYGSTEVAFATIATPEDLAEAPGTVGRPPKGVTVKILDENGNEVPRGVVG 403
Query: 91 EVCYRGYNVMLGYYGEENKILENDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIP 150
+ GY +K + D SGD E+G V GR D+I+ GGEN+ P
Sbjct: 404 RIFVGNGFPFEGYTDGRDKQII-DGLLSSGDVGYFDEDGLLFVDGRDDDMIVSGGENVFP 462
Query: 151 KEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCKGK 204
E+E +L HPDVVEA V GV DE G+ + A + PGA+L +D IK Y +
Sbjct: 463 AEVEDLLAGHPDVVEAAVIGVDDEEFGQRLRAFVVKAPGAALDEDAIKDYVRDN 516
>gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated.
Length = 502
Score = 98.1 bits (245), Expect = 5e-24
Identities = 67/242 (27%), Positives = 105/242 (43%), Gaps = 47/242 (19%)
Query: 1 MISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLF 60
+I R+ + T PTM+V ++ L EE+ ++SS +A+ A APC +
Sbjct: 229 LIERY----RVTHSQLVPTMFVRMLK----LPEEVRA-RYDVSSLRVAIHAAAPCPVEVK 279
Query: 61 NKIRDTFG-----------------------IKHL---------IVKVVDKKGNIVPMGM 88
+ D +G + H V+++D+ GN +P G
Sbjct: 280 RAMIDWWGPIIHEYYASSEGGGVTVITSEDWLAHPGSVGKAVLGEVRILDEDGNELPPGE 339
Query: 89 CGEVCYRGYNVMLGYYGEENKILENDE---WFPSGDFFILHENGYGQVVGRIKDIIIRGG 145
G V + Y+ + K W GD L E+GY + R D+II GG
Sbjct: 340 IGTVYFEMDGYPFEYHNDPEKTAAARNPHGWVTVGDVGYLDEDGYLYLTDRKSDMIISGG 399
Query: 146 ENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQD---DIKTYCK 202
NI P+EIE +L THP V + V+GVPDE +GE V A ++ GA ++ + +
Sbjct: 400 VNIYPQEIENLLVTHPKVADVAVFGVPDEEMGERVKAVVQPADGADAGDALAAELIAWLR 459
Query: 203 GK 204
G+
Sbjct: 460 GR 461
>gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional.
Length = 509
Score = 97.8 bits (244), Expect = 7e-24
Identities = 47/133 (35%), Positives = 72/133 (54%), Gaps = 3/133 (2%)
Query: 74 VKVVDKKGNIVPMGMCGEVCYR-GYNVMLGYYG--EENKILENDEWFPSGDFFILHENGY 130
++ VD+ G +P G GE+ R N Y+ E+ ++ + SGD L +GY
Sbjct: 335 LRFVDEDGRPLPQGEIGEIYSRIAGNPDFTYHNKPEKRAEIDRGGFITSGDVGYLDADGY 394
Query: 131 GQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGA 190
+ R +D++I GG NI P EIE VL P V + V+G+PD GE ++A +E +PGA
Sbjct: 395 LFLCDRKRDMVISGGVNIYPAEIEAVLHAVPGVHDCAVFGIPDAEFGEALMAVVEPQPGA 454
Query: 191 SLTQDDIKTYCKG 203
+L + DI+ K
Sbjct: 455 TLDEADIRAQLKA 467
>gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase;
Validated.
Length = 517
Score = 97.4 bits (243), Expect = 9e-24
Identities = 40/134 (29%), Positives = 68/134 (50%), Gaps = 6/134 (4%)
Query: 74 VKVVDKKGNIVPMGMCGEVCYRGY---NVMLGYYGEEN---KILENDEWFPSGDFFILHE 127
++ D +P G GE+C +G + YY + K+LE D W +GD + E
Sbjct: 351 AEIRDDHNRPLPAGEIGEICIKGVPGKTIFKEYYLDPKATAKVLEADGWLHTGDTGYVDE 410
Query: 128 NGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELK 187
G+ V R ++I RGGEN+ E+E ++ THP + + V G+ D E + A + L
Sbjct: 411 EGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLN 470
Query: 188 PGASLTQDDIKTYC 201
G +L++++ +C
Sbjct: 471 EGETLSEEEFFAFC 484
>gnl|CDD|236803 PRK10946, entE, enterobactin synthase subunit E; Provisional.
Length = 536
Score = 97.0 bits (242), Expect = 1e-23
Identities = 46/122 (37%), Positives = 62/122 (50%), Gaps = 7/122 (5%)
Query: 74 VKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYG--EEN-KILENDEWFPSGDFFILHENGY 130
V V D GN +P G G + RG GYY + N + + ++ SGD + +GY
Sbjct: 365 VWVADADGNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLVSIDPDGY 424
Query: 131 GQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGE----VVVANIEL 186
VVGR KD I RGGE I +EIE +L HP V+ A + + DE +GE +V L
Sbjct: 425 ITVVGREKDQINRGGEKIAAEEIENLLLRHPAVIHAALVSMEDELMGEKSCAFLVVKEPL 484
Query: 187 KP 188
K
Sbjct: 485 KA 486
>gnl|CDD|178097 PLN02479, PLN02479, acetate-CoA ligase.
Length = 567
Score = 96.8 bits (241), Expect = 2e-23
Identities = 52/122 (42%), Positives = 69/122 (56%), Gaps = 7/122 (5%)
Query: 90 GEVCYRGYNVMLGYYG--EENKILENDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGEN 147
GE+ RG VM GY + N+ + WF SGD + H +GY ++ R KDIII GGEN
Sbjct: 403 GEIVMRGNMVMKGYLKNPKANEEAFANGWFHSGDLGVKHPDGYIEIKDRSKDIIISGGEN 462
Query: 148 IIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGA-----SLTQDDIKTYCK 202
I E+E V+ THP V+EA V PDER GE A + LKPG + +DI +C+
Sbjct: 463 ISSLEVENVVYTHPAVLEASVVARPDERWGESPCAFVTLKPGVDKSDEAALAEDIMKFCR 522
Query: 203 GK 204
+
Sbjct: 523 ER 524
>gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to
LC-FACS from Thermus thermophiles. This family includes
fatty acyl-CoA synthetases that can activate
medium-chain to long-chain fatty acids. They catalyze
the ATP-dependent acylation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. The fatty
acyl-CoA synthetases are responsible for fatty acid
degradation as well as physiological regulation of
cellular functions via the production of fatty acyl-CoA
esters. The fatty acyl-CoA synthetase from Thermus
thermophiles in this family was shown catalyzing the
long-chain fatty acid, myristoyl acid, while another
member in this family, the AlkK protein identified from
Pseudomonas oleovorans, targets medium chain fatty
acids. This family also includes uncharacterized FACS
proteins.
Length = 517
Score = 96.5 bits (241), Expect = 2e-23
Identities = 54/138 (39%), Positives = 79/138 (57%), Gaps = 10/138 (7%)
Query: 74 VKVVDKKGNIVP-----MGMCGEVCYRGYNVMLGYYG--EENKILENDEWFPSGDFFILH 126
+++VD +GN +P +G E+ RG V YY E+ + L D WF +GD ++
Sbjct: 352 LRIVDDEGNELPWDGKTVG---ELVVRGPWVTGSYYKDPEKTEELTRDGWFRTGDVAVID 408
Query: 127 ENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIEL 186
E+GY Q+ R KD+I GGE I E+E L HP V EA V GVP E+ GE +A + L
Sbjct: 409 EDGYIQITDRAKDVIKSGGEWISSVELENALMAHPAVAEAAVVGVPHEKWGERPLAVVVL 468
Query: 187 KPGASLTQDDIKTYCKGK 204
KPGA +T++++ + K
Sbjct: 469 KPGAKVTEEELLEHLAKK 486
>gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase.
Length = 563
Score = 96.4 bits (240), Expect = 3e-23
Identities = 47/118 (39%), Positives = 66/118 (55%), Gaps = 3/118 (2%)
Query: 90 GEVCYRGYNVMLGYYG---EENKILENDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGE 146
G + RG +VMLGY+G E +L ND W +GD + + G ++GR D I GGE
Sbjct: 386 GRILTRGPHVMLGYWGQNSETASVLSNDGWLDTGDIGWIDKAGNLWLIGRSNDRIKTGGE 445
Query: 147 NIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCKGK 204
N+ P+E+E VL HP V V GVPD RL E+VVA + L+ G + ++ + K
Sbjct: 446 NVYPEEVEAVLSQHPGVASVVVVGVPDSRLTEMVVACVRLRDGWIWSDNEKENAKKNL 503
>gnl|CDD|172019 PRK13382, PRK13382, acyl-CoA synthetase; Provisional.
Length = 537
Score = 96.0 bits (239), Expect = 3e-23
Identities = 52/129 (40%), Positives = 73/129 (56%), Gaps = 1/129 (0%)
Query: 74 VKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILENDEWFPSGDFFILHENGYGQV 133
++++D+ VP G G + R GY K +D + SGD L ENG V
Sbjct: 376 IRILDQDFREVPTGEVGTIFVRNDTQFDGYTSGSTKDF-HDGFMASGDVGYLDENGRLFV 434
Query: 134 VGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLT 193
VGR ++I+ GGEN+ P E+E L THPDV EA V GV DE+ G+ + A + LKPGAS T
Sbjct: 435 VGRDDEMIVSGGENVYPIEVEKTLATHPDVAEAAVIGVDDEQYGQRLAAFVVLKPGASAT 494
Query: 194 QDDIKTYCK 202
+ +K + +
Sbjct: 495 PETLKQHVR 503
>gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases
[Lipid metabolism].
Length = 528
Score = 95.0 bits (237), Expect = 7e-23
Identities = 65/224 (29%), Positives = 95/224 (42%), Gaps = 43/224 (19%)
Query: 6 IVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFN---- 61
+ K K T+ +PT L+ + +LSS + +AG P +P F
Sbjct: 260 LEKYKVTIFGTSPTFLRRLMK------LGLGE-PYDLSSLRVLGSAGEPLNPEAFEWFYS 312
Query: 62 ----KIRDTFG--------IKHL---------------IVKVVDKKGNIVPMGMCGEVCY 94
I D +G I V+ VD +GN VP G+ GE+
Sbjct: 313 ALGVWILDIYGQTETGMGFIAGRPPVKNGSSGLPLPGYAVRRVDDEGNPVPPGV-GELVV 371
Query: 95 RGYN--VMLGYYGEENKILEN--DEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIP 150
R + L Y+ + + E W+ +GD+ E+GY + GR D+I G+ I P
Sbjct: 372 RLPWPGMALTYWNDPERYKEAYFGRWYRTGDWAERDEDGYFWLHGRSDDVIKVSGKRIGP 431
Query: 151 KEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQ 194
EIE VL HP V EA V GVPD G++V+A + L G +
Sbjct: 432 LEIESVLLAHPAVAEAAVVGVPDPGKGQIVLAFVVLAAGVEPNE 475
>gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated.
Length = 533
Score = 95.0 bits (237), Expect = 8e-23
Identities = 50/146 (34%), Positives = 76/146 (52%), Gaps = 10/146 (6%)
Query: 64 RDTFGIKHLIVKVVDKKGNIVPMG--MCGEVCYRGYNVMLGYYGEENK------ILENDE 115
F I V V+D+ GN V G G + RG+ + LGYY + K ++
Sbjct: 351 GPRFTIGPRTV-VLDEDGNPVEPGSGEIGWIARRGH-IPLGYYKDPEKTAETFPTIDGVR 408
Query: 116 WFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDER 175
+ GD + +G ++GR I GGE + P+E+E L+ HPDV +A V GVPDER
Sbjct: 409 YAIPGDRARVEADGTITLLGRGSVCINTGGEKVFPEEVEEALKAHPDVADALVVGVPDER 468
Query: 176 LGEVVVANIELKPGASLTQDDIKTYC 201
G+ VVA ++L+ GA +++ +C
Sbjct: 469 WGQEVVAVVQLREGARPDLAELRAHC 494
>gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL). 4-Coumarate:coenzyme A
ligase is a key enzyme in the phenylpropanoid metabolic
pathway for monolignol and flavonoid biosynthesis. It
catalyzes the synthesis of hydroxycinnamate-CoA
thioesters in a two-step reaction, involving the
formation of hydroxycinnamate-AMP anhydride and the
nucleophilic substitution of AMP by CoA. The
phenylpropanoid pathway is one of the most important
secondary metabolism pathways in plants and
hydroxycinnamate-CoA thioesters are the precursors of
lignin and other important phenylpropanoids.
Length = 504
Score = 94.6 bits (236), Expect = 9e-23
Identities = 43/131 (32%), Positives = 73/131 (55%), Gaps = 4/131 (3%)
Query: 74 VKVVD-KKGNIVPMGMCGEVCYRGYNVMLGYYGEEN---KILENDEWFPSGDFFILHENG 129
K+VD + G +P GE+ RG VM GY + ++ D W +GD E+G
Sbjct: 341 AKIVDPETGESLPPNQPGELWVRGPQVMKGYLNNPEATAETIDKDGWLHTGDLGYFDEDG 400
Query: 130 YGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPG 189
Y +V R+K++I G + P E+E +L +HP++ +A V PDE GE+ +A + +PG
Sbjct: 401 YLFIVDRLKELIKYKGFQVAPAELEALLLSHPEIADAAVIPYPDEEAGEIPMAFVVRQPG 460
Query: 190 ASLTQDDIKTY 200
+ L++D++ +
Sbjct: 461 SELSEDEVMQF 471
>gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated.
Length = 567
Score = 94.3 bits (235), Expect = 1e-22
Identities = 44/132 (33%), Positives = 74/132 (56%), Gaps = 3/132 (2%)
Query: 74 VKVVD-KKGNIVPMGMCGEVCYRGYNVMLGYYG--EENKILENDEWFPSGDFFILHENGY 130
K+ D + G ++P+G GE+ R +++ GY+ E D W +GD + E G+
Sbjct: 398 FKICDFETGELLPLGAEGEIVVRTPSLLKGYWNKPEATAEALRDGWLHTGDIGKIDEQGF 457
Query: 131 GQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGA 190
+GR K+++ G ++ P E+E +L HP V+ + V G PD G+V VA ++LKPGA
Sbjct: 458 LHYLGRRKEMLKVNGMSVFPSEVEALLGQHPAVLGSAVVGRPDPDKGQVPVAFVQLKPGA 517
Query: 191 SLTQDDIKTYCK 202
LT ++ +C+
Sbjct: 518 DLTAAALQAWCR 529
>gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like.
Length = 560
Score = 94.1 bits (234), Expect = 2e-22
Identities = 48/130 (36%), Positives = 75/130 (57%), Gaps = 4/130 (3%)
Query: 75 KVVD-KKGNIVPMGMCGEVCYRGYNVMLGYY-GEENKIL--ENDEWFPSGDFFILHENGY 130
KVVD G ++P G CGE+ +G VM GY + + D W +GD E+GY
Sbjct: 386 KVVDWSTGCLLPPGNCGELWIQGPGVMKGYLNNPKATQSTIDKDGWLRTGDIAYFDEDGY 445
Query: 131 GQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGA 190
+V R+K+II G I P ++E VL +HP++++A V VPD+ GE+ VA + + G+
Sbjct: 446 LYIVDRLKEIIKYKGFQIAPADLEAVLISHPEIIDAAVTAVPDKECGEIPVAFVVRRQGS 505
Query: 191 SLTQDDIKTY 200
+L+Q+ + Y
Sbjct: 506 TLSQEAVINY 515
>gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase. This model
represents an enzyme, O-succinylbenzoate-CoA ligase,
which is involved in the fourth step of the menaquinone
biosynthesis pathway. O-succinylbenzoate-CoA ligase,
together with menB - naphtoate synthase, take
2-succinylbenzoate and convert it into 1,4-di-hydroxy-2-
naphtoate [Biosynthesis of cofactors, prosthetic groups,
and carriers, Menaquinone and ubiquinone].
Length = 436
Score = 93.3 bits (232), Expect = 2e-22
Identities = 48/117 (41%), Positives = 63/117 (53%), Gaps = 4/117 (3%)
Query: 90 GEVCYRGYNVMLGYY--GEENKILENDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGEN 147
GE+ +G N+M GY GE E WF +GD L G+ V+GR D+II GGEN
Sbjct: 293 GEIMVKGANLMKGYLYQGELTPAFEQQGWFNTGDIGELDGEGFLYVLGRRDDLIISGGEN 352
Query: 148 IIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCKGK 204
I P+EIE VL HP + EA V PD G+V VA I + + ++Q + Y K
Sbjct: 353 IYPEEIETVLYQHPGIQEAVVVPKPDAEWGQVPVAYIVSE--SDISQAKLIAYLTEK 407
>gnl|CDD|213291 cd05924, FACL_like_5, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 365
Score = 92.3 bits (230), Expect = 2e-22
Identities = 57/188 (30%), Positives = 90/188 (47%), Gaps = 23/188 (12%)
Query: 31 LTEEMPNI-------AEELSSPVIALTAGAPCSPTLFNKIRDTFGIKHLIVKVVDKKGNI 83
L E +PN+ A E +++ S T ++ V+D+ G+
Sbjct: 155 LLELLPNLALVDALGASETGGGGSSVSRAGGASATGKFELGPD-------TVVLDEDGSE 207
Query: 84 VPMG--MCGEVCYRGYNVMLGYYGEENK------ILENDEWFPSGDFFILHENGYGQVVG 135
VP G G + G V LGYY + K ++ + GDF + +G ++G
Sbjct: 208 VPPGSGEVGWIARGGR-VPLGYYKDPEKTAKTFREIDGVRYAVPGDFARVEADGTITLLG 266
Query: 136 RIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQD 195
R I GGE + P+E+E L+ HPDV +A V GVPDER G+ VVA ++L+ GA L
Sbjct: 267 RGSVCINTGGEKVFPEEVEEALKAHPDVADALVVGVPDERWGQRVVAVVQLRAGAGLDLA 326
Query: 196 DIKTYCKG 203
+++ +C+
Sbjct: 327 ELRDHCRQ 334
>gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain
acyl-CoA synthetase (MACS). MACS catalyzes the two-step
activation of medium chain fatty acids (containing 4-12
carbons). The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. MACS
enzymes are localized to mitochondria.
Length = 439
Score = 92.0 bits (229), Expect = 5e-22
Identities = 45/121 (37%), Positives = 57/121 (47%), Gaps = 4/121 (3%)
Query: 73 IVKVVDKKGNIVPMGMCGEVCYRGYN--VMLGYYGEENKILEN--DEWFPSGDFFILHEN 128
V VVD G VP G GE+ + + + LGY+ +W +GD +
Sbjct: 270 EVAVVDDAGRPVPPGEVGEIAVKRPDPVMFLGYWNNPEATAAKFAGDWLLTGDLGRRDAD 329
Query: 129 GYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKP 188
GY GR D+I G I P EIE L HP V+EA V GVPD GE+V A + L
Sbjct: 330 GYLWFKGRADDVIKSSGYRIGPAEIEECLLKHPAVLEAAVVGVPDPERGEIVKAFVVLAE 389
Query: 189 G 189
G
Sbjct: 390 G 390
>gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or
ACSM). MACS catalyzes the two-step activation of medium
chain fatty acids (containing 4-12 carbons). The
carboxylate substrate first reacts with ATP to form an
acyl-adenylate intermediate, which then reacts with CoA
to produce an acyl-CoA ester. The acyl-CoA is a key
intermediate in many important biosynthetic and
catabolic processes.
Length = 430
Score = 91.3 bits (227), Expect = 1e-21
Identities = 65/234 (27%), Positives = 93/234 (39%), Gaps = 60/234 (25%)
Query: 1 MISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVI-----ALTAGAPC 55
++ R+ V T PT Y L+ ++LSS ++AG P
Sbjct: 167 LLERYGV----TTFCAPPTAYRMLL-------------QQDLSSYDFSHLRHVVSAGEPL 209
Query: 56 SPTLFN--------KIRDTFG----------IKHLIVK--------------VVDKKGNI 83
+P + + IRD +G + VK ++D +GN
Sbjct: 210 NPEVIDWWRAATGLPIRDGYGQTETGLLVANFPGMEVKPGSMGRPAPGYRVAIIDDEGNE 269
Query: 84 VPMGMCGEVC----YRGYNVMLGYYGEENKILEN--DEWFPSGDFFILHENGYGQVVGRI 137
+P G G++ R + GY + K +W+ +GD I E+GY VGR
Sbjct: 270 LPPGEEGDIAVRVKPRPPGLFRGYLKDPEKTEATIRGDWYLTGDRAIKDEDGYFWFVGRA 329
Query: 138 KDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGAS 191
D+I G I P E+E L HP V EA V G PD GEVV A + L PG
Sbjct: 330 DDVIKSSGYRIGPFEVESALIEHPAVAEAAVVGSPDPVRGEVVKAFVVLAPGYQ 383
>gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated.
Length = 546
Score = 91.2 bits (227), Expect = 1e-21
Identities = 61/244 (25%), Positives = 99/244 (40%), Gaps = 54/244 (22%)
Query: 2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAE-ELSSPVIALTAGAPCSPTLF 60
I R+ + T PTM VD ++S P +AE +LSS GA +
Sbjct: 275 IERY----RVTHWTNIPTMVVDFLAS--------PGLAERDLSSLRYIGGGGAAMPEAVA 322
Query: 61 NKIRDTFGIK-------------------------HLIV-------KVVD-KKGNIVPMG 87
++++ G+ L + +V+D + +P G
Sbjct: 323 ERLKELTGLDYVEGYGLTETMAQTHSNPPDRPKLQCLGIPTFGVDARVIDPETLEELPPG 382
Query: 88 MCGEVCYRGYNVMLGYYG--EENK----ILENDEWFPSGDFFILHENGYGQVVGRIKDII 141
GE+ G V GY+ E ++ +F +GD + E GY + R+K +I
Sbjct: 383 EVGEIVVHGPQVFKGYWNRPEATAEAFIEIDGKRFFRTGDLGRMDEEGYFFITDRLKRMI 442
Query: 142 IRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGA--SLTQDDIKT 199
G + P E+E +L HP + EA V PD R GE V A + L+P A T+++I
Sbjct: 443 NASGFKVWPAEVENLLYKHPAIQEACVIATPDPRRGETVKAVVVLRPEARGKTTEEEIIA 502
Query: 200 YCKG 203
+ +
Sbjct: 503 WARE 506
>gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA. PimA, a member of
a large family of acyl-CoA ligases, is found in a
characteristic operon pimFABCDE for the metabolism of
pimelate and related compounds. It is found, so far, in
Bradyrhizobium japonicum and several strains of
Rhodopseudomonas palustris. PimA from R. palustris was
shown to be active as a CoA ligase for C(7) to C(14)
dicarboxylates and fatty acids.
Length = 541
Score = 89.2 bits (221), Expect = 8e-21
Identities = 68/242 (28%), Positives = 109/242 (45%), Gaps = 47/242 (19%)
Query: 2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNI-AEELSSPVIALTAGAPCSPTLF 60
+ R I +++ TV G PTM++ L + P++ +LSS + GAP +
Sbjct: 278 VFRDIEEKRATVFPGVPTMWIALAN--------DPSLEKRDLSSLATIGSGGAPLPVEVA 329
Query: 61 N--------KIRDTFGIKH---------------------------LIVKVVDKKGNIVP 85
N K++ +G+ L V +D ++P
Sbjct: 330 NFFERKTGLKLKSGWGMTETCSPGTGHPPEGPDKPGSIGLMLPGIELDVVSLDDPTKVLP 389
Query: 86 MGMCGEVCYRGYNVMLGYYGEENKILEN--DEWFPSGDFFILHENGYGQVVGRIKDIIIR 143
G GE+ RG NV GY+ + E + F +GD + +GY +V R KD+II
Sbjct: 390 PGEVGELRIRGPNVTRGYWNRPEESAEAFVGDRFLTGDIGYMDTDGYFFLVDRKKDMIIS 449
Query: 144 GGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGAS-LTQDDIKTYCK 202
GG N+ P+ IE + HP V E V G+PD+ GE A ++L+PGA + D+++ +
Sbjct: 450 GGFNVYPQMIEQAIYEHPGVQEVIVIGIPDQYRGEAAKAFVKLRPGAKPFSLDELRAFLA 509
Query: 203 GK 204
GK
Sbjct: 510 GK 511
>gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional.
Length = 542
Score = 89.0 bits (221), Expect = 9e-21
Identities = 47/143 (32%), Positives = 74/143 (51%), Gaps = 5/143 (3%)
Query: 64 RDTFGIKHLIVKVVDKKGNIVPMG--MCGEVCYRGYNVMLGYYGEENKILENDEWFPSGD 121
FG++ +K+ D G +P G + RG V YY + +IL++D +F +GD
Sbjct: 360 YPPFGVE---MKITDDAGKELPWDGKTFGRLKVRGPAVAAAYYRVDGEILDDDGFFDTGD 416
Query: 122 FFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVV 181
+ GY ++ R KD+I GGE I ++E + HP V EA V GV + E +
Sbjct: 417 VATIDAYGYMRITDRSKDVIKSGGEWISSIDLENLAVGHPKVAEAAVIGVYHPKWDERPL 476
Query: 182 ANIELKPGASLTQDDIKTYCKGK 204
++LKPG + T+++I Y GK
Sbjct: 477 LIVQLKPGETATREEILKYMDGK 499
>gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid
metabolism].
Length = 613
Score = 88.9 bits (221), Expect = 1e-20
Identities = 41/142 (28%), Positives = 62/142 (43%), Gaps = 16/142 (11%)
Query: 50 TAGAPCSPTLFNKIRDTFG--IKHLIVKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEE 107
T+ + T G + + VK+ D GE+ RG NVM GYY
Sbjct: 389 TSAVVSVNPPDRFVLGTVGKPLPGIEVKIADD----------GEILVRGPNVMKGYYKNP 438
Query: 108 N---KILENDEWFPSGDFFILHENGYGQVVGRIKDIII-RGGENIIPKEIEYVLQTHPDV 163
+ D WF +GD L E+GY + GR K++I G+NI P+ IE L P +
Sbjct: 439 EATAEAFTEDGWFRTGDLGELDEDGYLVITGRKKELIKLSNGKNIAPEPIESKLAKSPLI 498
Query: 164 VEAQVYGVPDERLGEVVVANIE 185
+ V G + L ++V + +
Sbjct: 499 EQICVVGDDKKFLVALIVPDFD 520
>gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and
Bubblegum-like very long-chain fatty acid CoA
synthetases. This family includes long-chain fatty acid
(C12-C20) CoA synthetases and Bubblegum-like very
long-chain (>C20) fatty acid CoA synthetases. FACS
catalyzes the formation of fatty acyl-CoA in a two-step
reaction: the formation of a fatty acyl-AMP molecule as
an intermediate, and the formation of a fatty acyl-CoA.
Eukaryotes generally have multiple isoforms of LC-FACS
genes with multiple splice variants. For example, nine
genes are found in Arabidopsis and six genes are
expressed in mammalian cells. Drosophila melanogaster
mutant bubblegum (BGM) have elevated levels of
very-long-chain fatty acids (VLCFA) caused by a
defective gene later named bubblegum. The human homolog
(hsBG) of bubblegum has been characterized as a very
long chain fatty acid CoA synthetase that functions
specifically in the brain; hsBG may play a central role
in brain VLCFA metabolism and myelinogenesis. Free fatty
acids must be "activated" to their CoA thioesters before
participating in most catabolic and anabolic reactions.
Length = 456
Score = 86.4 bits (215), Expect = 6e-20
Identities = 37/100 (37%), Positives = 53/100 (53%), Gaps = 4/100 (4%)
Query: 90 GEVCYRGYNVMLGYYGEENK---ILENDEWFPSGDFFILHENGYGQVVGRIKDIII-RGG 145
GE+ RG NVM GYY L+ D W +GD L E+G+ + R KD+I+ GG
Sbjct: 283 GEILVRGPNVMKGYYKNPEATAEALDEDGWLHTGDIGRLDEDGFLVITDRKKDLIVTAGG 342
Query: 146 ENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIE 185
+NI P+ IE L+ P + +A V G L ++V + E
Sbjct: 343 KNIAPQPIENALKASPYISQAVVVGDDRPYLTALIVLDPE 382
>gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated.
Length = 563
Score = 86.6 bits (214), Expect = 6e-20
Identities = 67/233 (28%), Positives = 111/233 (47%), Gaps = 33/233 (14%)
Query: 1 MISRHIVKEKCTVLYGTPTMYVDL----------ISSIQ-------PLTEEMPNIAEELS 43
M+ I K K T+ G PT+Y+ L ISSI+ PL E+ E ++
Sbjct: 288 MVFEAIKKHKVTLFPGAPTIYIALLNSPLLKEYDISSIRACISGSAPLPVEVQEKFETVT 347
Query: 44 SPVI----ALTAGAPCSPTLF---NKIRDTFGI-----KHLIVKVVDKKGNIVPMGMCGE 91
+ LT +P + + F ++ + G+ + +I+ + + G +P G GE
Sbjct: 348 GGKLVEGYGLTESSPVTHSNFLWEKRVPGSIGVPWPDTEAMIMSL--ETGEALPPGEIGE 405
Query: 92 VCYRGYNVMLGYYG--EENKILENDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENII 149
+ +G +M GY+ EE + D W +GD + E+G+ V R KD+I+ G N+
Sbjct: 406 IVVKGPQIMKGYWNKPEETAAVLQDGWLHTGDVGYMDEDGFFYVKDRKKDMIVASGFNVY 465
Query: 150 PKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCK 202
P+E+E VL H V E GVPD GE V A + LK G +++++ + +
Sbjct: 466 PREVEEVLYEHEKVQEVVTIGVPDPYRGETVKAFVVLKEGTECSEEELNQFAR 518
>gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites
biosynthesis, transport, and catabolism].
Length = 542
Score = 86.7 bits (215), Expect = 6e-20
Identities = 56/146 (38%), Positives = 73/146 (50%), Gaps = 16/146 (10%)
Query: 46 VIALTAGAPCSPTLFNKIRDTFGIKHLIVKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYG 105
+I T G P SP V+VVD GN V G GE+ RG + GYY
Sbjct: 355 IIIHTQGRPLSP-------------DDEVRVVDADGNPVAPGEVGELLTRGPYTIRGYYR 401
Query: 106 --EEN-KILENDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPD 162
E N + + D ++ SGD +GY V GR+KD I RGGE I +E+E +L HP
Sbjct: 402 APEHNARAFDADGFYRSGDLVRRDPDGYLVVEGRVKDQINRGGEKIAAEEVENLLLRHPA 461
Query: 163 VVEAQVYGVPDERLGEVVVANIELKP 188
V +A + +PDE LGE A I +K
Sbjct: 462 VHDAALVAMPDELLGEKSCAFIVVKE 487
>gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL). ABCL catalyzes
the initial step in the 2-aminobenzoate aerobic
degradation pathway by activating 2-aminobenzoate to
2-aminobenzoyl-CoA. The reaction is carried out via a
two-step process; the first step is ATP-dependent and
forms a 2-aminobenzoyl-AMP intermediate, and the second
step forms the 2-aminobenzoyl-CoA ester and releases the
AMP. 2-Aminobenzoyl-CoA is further converted to
2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by
2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has
been purified from cells aerobically grown with
2-aminobenzoate as sole carbon, energy, and nitrogen
source, and has been characterized as a monomer.
Length = 487
Score = 86.4 bits (214), Expect = 8e-20
Identities = 62/225 (27%), Positives = 96/225 (42%), Gaps = 41/225 (18%)
Query: 6 IVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRD 65
I + + T+L+ PT Y + + ++ A ++SS ++AG ++ +
Sbjct: 233 IQEHRATILFTAPTAY-------RAMLIKVK--AFDISSLRKCVSAGETLPAKVWQDWYE 283
Query: 66 TFGIK-----------HLIV---------------------KVVDKKGNIVPMGMCGEVC 93
G+K H+ + ++VD +GN VP G G +
Sbjct: 284 RTGLKIIDGIGATEMLHIFISANEENAKPGATGKPVPGYEARIVDDQGNEVPRGEAGRLA 343
Query: 94 YRGYNVMLGYYGEENKILENDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEI 153
RG E + D W +GD F E+GY V R D+I+ G NI E+
Sbjct: 344 VRGPTGCRYLDDERQQEYVRDGWNVTGDIFRQDEDGYFHYVARSDDMIVSAGYNIAAPEV 403
Query: 154 EYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIK 198
E L THPDV E V GVPDE G++V A+I L+ G T+ +
Sbjct: 404 EDALLTHPDVAECAVIGVPDEERGQIVCAHIVLRDGTKATELLAE 448
>gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase. Proteins
in this family belong to the AMP-binding enzyme family
(pfam00501). Members activate 2,3-dihydroxybenzoate
(DHB) by ligation of AMP from ATP with the release of
pyrophosphate; many are involved in synthesis of
siderophores such as enterobactin, vibriobactin,
vulnibactin, etc. The most closely related proteine
believed to differ in function activates salicylate
rather than DHB [Transport and binding proteins, Cations
and iron carrying compounds].
Length = 526
Score = 86.0 bits (213), Expect = 8e-20
Identities = 55/154 (35%), Positives = 71/154 (46%), Gaps = 21/154 (13%)
Query: 43 SSPVIALTAGAPCSPTLFNKIRDTFGIKHLIVKVVDKKGNIVPMGMCGEVCYRGYNVMLG 102
+ +I T G P SP V+VVD GN V G G + RG G
Sbjct: 345 PAEIIFTTQGRPMSP-------------DDEVRVVDDHGNPVAPGETGMLLTRGPYTFRG 391
Query: 103 YYGEEN---KILENDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQT 159
YY + + ++ +GD L GY VVGR KD I RGGE I +EIE +L
Sbjct: 392 YYKAPEHNAAAFDAEGFYYTGDLVRLTPEGYIVVVGRAKDQINRGGEKIAAEEIENLLLA 451
Query: 160 HPDVVEAQVYGVPDERLGE-----VVVANIELKP 188
HP V +A + +PDE LGE +VV + LK
Sbjct: 452 HPAVHDAALVSMPDELLGEKSCAFIVVRDPALKA 485
>gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1.
Length = 546
Score = 83.1 bits (205), Expect = 1e-18
Identities = 48/138 (34%), Positives = 76/138 (55%), Gaps = 4/138 (2%)
Query: 67 FGIKHLIVKVVD-KKGNIVPMGMCGEVCYRGYNVMLGYYG---EENKILENDEWFPSGDF 122
F + +L VK +D G +P GE+C R VM GYY E ++ ++ D W +GD
Sbjct: 365 FILPNLEVKFIDPDTGRSLPKNTPGELCVRSQCVMQGYYNNKEETDRTIDEDGWLHTGDI 424
Query: 123 FILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVA 182
+ ++G +V RIK++I G + P E+E +L THP V +A V +PDE GE+ A
Sbjct: 425 GYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVPLPDEEAGEIPAA 484
Query: 183 NIELKPGASLTQDDIKTY 200
+ + P A +++DI +
Sbjct: 485 CVVINPKAKESEEDILNF 502
>gnl|CDD|139531 PRK13383, PRK13383, acyl-CoA synthetase; Provisional.
Length = 516
Score = 83.1 bits (205), Expect = 1e-18
Identities = 42/131 (32%), Positives = 63/131 (48%), Gaps = 1/131 (0%)
Query: 74 VKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILENDEWFPSGDFFILHENGYGQV 133
V+++D+ V + G + G Y K + D +GD L G +
Sbjct: 356 VRILDRNNRPVGPRVTGRIFVGGELAGTRYTDGGGKAVV-DGMTSTGDMGYLDNAGRLFI 414
Query: 134 VGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLT 193
VGR D+II GGEN+ P+ +E L HP V + V GVPDER G + A + L PG+ +
Sbjct: 415 VGREDDMIISGGENVYPRAVENALAAHPAVADNAVIGVPDERFGHRLAAFVVLHPGSGVD 474
Query: 194 QDDIKTYCKGK 204
++ Y K +
Sbjct: 475 AAQLRDYLKDR 485
>gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL). FAAL belongs to the
class I adenylate forming enzyme family and is
homologous to fatty acyl-coenzyme A (CoA) ligases
(FACLs). However, FAALs produce only the acyl adenylate
and are unable to perform the thioester-forming
reaction, while FACLs perform a two-step catalytic
reaction; AMP ligation followed by CoA ligation using
ATP and CoA as cofactors. FAALs have insertion motifs
between the N-terminal and C-terminal subdomains that
distinguish them from the FACLs. This insertion motif
precludes the binding of CoA, thus preventing CoA
ligation. It has been suggested that the acyl adenylates
serve as substrates for multifunctional polyketide
synthases to permit synthesis of complex lipids such as
phthiocerol dimycocerosate, sulfolipids, mycolic acids,
and mycobactin.
Length = 547
Score = 81.1 bits (201), Expect = 5e-18
Identities = 37/138 (26%), Positives = 59/138 (42%), Gaps = 19/138 (13%)
Query: 74 VKVVDKKGNI-VPMGMCGEVCYRGYNVMLGYYGEE-------NKILENDE--WFPSGDFF 123
V++VD + +P G GE+ RG +V GY+ L DE W +GD
Sbjct: 366 VRIVDPETRRPLPDGEVGEIWVRGPSVAAGYWNRPEATAETFGARLATDEGGWLRTGDLG 425
Query: 124 ILHENGYGQ--VVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQ---VYGVPDERLGE 178
LH+ G+ V GR+KD+II G N P++IE ++ + + V +
Sbjct: 426 FLHD---GELYVTGRLKDLIIIRGRNHYPQDIEATVERAHPALRPGAAAAFSVDGDGEER 482
Query: 179 VVVANIELKPGASLTQDD 196
+VV E++
Sbjct: 483 LVVV-AEVRRRGLPADLA 499
>gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate
forming enzymes. This family contains benzoate CoA
ligase (BCL) and related ligases that catalyze the
acylation of benzoate derivatives, 2-aminobenzoate and
4-hydroxybenzoate. Aromatic compounds represent the
second most abundant class of organic carbon compounds
after carbohydrates. Xenobiotic aromatic compounds are
also a major class of man-made pollutants. Some bacteria
use benzoate as the sole source of carbon and energy
through benzoate degradation. Benzoate degradation
starts with its activation to benzoyl-CoA by benzoate
CoA ligase. The reaction catalyzed by benzoate CoA
ligase proceeds via a two-step process; the first
ATP-dependent step forms an acyl-AMP intermediate, and
the second step forms the acyl-CoA ester with release of
the AMP.
Length = 436
Score = 80.8 bits (200), Expect = 6e-18
Identities = 56/220 (25%), Positives = 89/220 (40%), Gaps = 41/220 (18%)
Query: 6 IVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRD 65
+ + + TVL+G P +Y L+ S P S + ++AG L + +
Sbjct: 178 LARHRPTVLFGVPALYRALLES---GAGSAPL----FRSVRLCVSAGEALPAGLAERWAE 230
Query: 66 TFGIK-----------HLI---------------------VKVVDKKGNIVPMGMCGEVC 93
GI+ H+ ++VD+ G VP G G++
Sbjct: 231 ATGIEILDGIGSTEVLHIFISNRPGAARPGTTGRPVPGYEARLVDESGREVPAGTVGDLW 290
Query: 94 YRGYNVMLGYYGEENKILEN--DEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPK 151
RG ++ GY+ K D W +GD F +G+ + GR D+I G+ + P
Sbjct: 291 VRGPSLAPGYWNLPEKTQRTLRDGWLRTGDRFSRDADGWYRYQGRADDMIKVSGQWVSPL 350
Query: 152 EIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGAS 191
E+E L HP V EA V VPDE + A + +PG +
Sbjct: 351 EVEAALGEHPAVAEAAVVAVPDEDGLVRLKAFVVPRPGEA 390
>gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA
synthetase like family (ACS). This family is most
similar to acetyl-CoA synthetase. Acetyl-CoA synthetase
(ACS) catalyzes the formation of acetyl-CoA from
acetate, CoA, and ATP. Synthesis of acetyl-CoA is
carried out in a two-step reaction. In the first step,
the enzyme catalyzes the synthesis of acetyl-AMP
intermediate from acetate and ATP. In the second step,
acetyl-AMP reacts with CoA to produce acetyl-CoA. This
enzyme is only present in bacteria.
Length = 443
Score = 80.5 bits (199), Expect = 6e-18
Identities = 45/140 (32%), Positives = 71/140 (50%), Gaps = 11/140 (7%)
Query: 76 VVDKKGN----IVPMGMCGEVCYR-GYNVML-GYYGEENKILEN--DEWFPSGDFFILHE 127
V+++ G+ + G GE+ + G+ M GY G E + + D W+ +GD E
Sbjct: 273 VIERDGDGLTPVTGPGQVGELALKPGWPSMFRGYLGNEERYASSFVDGWYLTGDLAYRDE 332
Query: 128 NGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELK 187
+GY VGR D+I G + P E+E L HP V EA V G PD GE+V A + L+
Sbjct: 333 DGYFWFVGRADDVIKTAGHLVGPFEVESALMEHPAVAEAGVIGKPDPVAGEIVKAFVSLR 392
Query: 188 PGASLT---QDDIKTYCKGK 204
PG + + ++ T+ + +
Sbjct: 393 PGFEPSEELRRELLTFARQR 412
>gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional.
Length = 511
Score = 79.7 bits (197), Expect = 1e-17
Identities = 46/131 (35%), Positives = 64/131 (48%), Gaps = 9/131 (6%)
Query: 64 RDTFGIKHLIVKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILE----NDEWFPS 119
R FG H ++D G +P G G + + G Y + K E + W
Sbjct: 332 RAMFGDLH----ILDDDGAELPPGEPGTIWFEG-GRPFEYLNDPAKTAEARHPDGTWSTV 386
Query: 120 GDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEV 179
GD + E+GY + R +II GG NI P+E E +L THP V +A V+GVP+E LGE
Sbjct: 387 GDIGYVDEDGYLYLTDRAAFMIISGGVNIYPQEAENLLITHPKVADAAVFGVPNEDLGEE 446
Query: 180 VVANIELKPGA 190
V A ++ G
Sbjct: 447 VKAVVQPVDGV 457
>gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional.
Length = 570
Score = 79.6 bits (197), Expect = 1e-17
Identities = 42/118 (35%), Positives = 62/118 (52%), Gaps = 4/118 (3%)
Query: 76 VVDKKGNIVPMGMCGEVCYR-GYNVML-GYYGEENKILE--NDEWFPSGDFFILHENGYG 131
+VD +GN +P G + + G+ M+ G + K +W+ SGD + E+GY
Sbjct: 389 IVDDQGNELPPNRMGNLAIKKGWPSMMRGIWNNPEKYESYFAGDWYVSGDSAYMDEDGYF 448
Query: 132 QVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPG 189
GR+ D+I GE + P E+E L HP V EA V G PD GE++ A + L+PG
Sbjct: 449 WFQGRVDDVIKTSGERVGPFEVESKLMEHPAVAEAGVIGKPDPVRGEIIKAFVALRPG 506
>gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain
acyl-CoA synthetase (MACS). MACS catalyzes the two-step
activation of medium chain fatty acids (containing 4-12
carbons). The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. MACS
enzymes are localized to mitochondria.
Length = 440
Score = 78.3 bits (193), Expect = 4e-17
Identities = 60/224 (26%), Positives = 88/224 (39%), Gaps = 46/224 (20%)
Query: 6 IVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSP-------- 57
+ + T G+PT Y L+++ + SS AG P +P
Sbjct: 174 LERLGVTNFAGSPTAYRMLMAAGADAAARIKLKLRVASS------AGEPLNPEVVRWFQA 227
Query: 58 TLFNKIRDTFG-------------IKHLI-------------VKVVDKKGNIVPMGMCGE 91
L I D +G + H + + V+D G + G G+
Sbjct: 228 NLGVTIHDHYGQTETGMPVGNHHALAHEVRAGSMGLPLPGYRIAVLDDDGQPLADGEPGQ 287
Query: 92 VCYRGYNVML----GYYGEENKILEN--DEWFPSGDFFILHENGYGQVVGRIKDIIIRGG 145
+ + L GY+ + K E W+ +GD E+GY +GR D+II G
Sbjct: 288 LAIDVASSPLLWFSGYWDDPEKTAELIAGRWYVTGDLVERDEDGYFWFIGRADDVIISAG 347
Query: 146 ENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPG 189
I P ++E L HP V EA V GVPD GE+V A + LK G
Sbjct: 348 YRIGPFDVESALLEHPAVAEAAVVGVPDPLRGEIVKAFVVLKEG 391
>gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase.
Length = 537
Score = 77.3 bits (191), Expect = 1e-16
Identities = 44/132 (33%), Positives = 73/132 (55%), Gaps = 6/132 (4%)
Query: 74 VKVVD-KKGNIVPMGMCGEVCYRGYNVMLGYYGE----ENKILENDEWFPSGDFFILHEN 128
+K+VD + G +P GE+C RG +M GY + N I + D W +GD + ++
Sbjct: 367 LKIVDPETGASLPRNQPGEICIRGPQIMKGYLNDPEATANTI-DKDGWLHTGDIGYIDDD 425
Query: 129 GYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKP 188
+V R+K++I G + P E+E +L +HP + +A V + DE GEV VA +
Sbjct: 426 DELFIVDRLKELIKYKGFQVAPAELEALLISHPSIADAAVVPMKDEVAGEVPVAFVVRSN 485
Query: 189 GASLTQDDIKTY 200
G+ +T+D+IK +
Sbjct: 486 GSEITEDEIKQF 497
>gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated.
Length = 539
Score = 77.1 bits (190), Expect = 1e-16
Identities = 49/147 (33%), Positives = 74/147 (50%), Gaps = 14/147 (9%)
Query: 64 RDTFGIKHLIVKVVDKKGNIVPM-GMC-GEVCYRGYNVMLGYYGEENKILENDEWFPSGD 121
R +G+ +K+V G +P G G++ RG V+ Y+ + L D WFP+GD
Sbjct: 360 RVIYGVD---MKIVGDDGRELPWDGKAFGDLQVRGPWVIDRYFRGDASPLV-DGWFPTGD 415
Query: 122 FFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVP----DERLG 177
+ +G+ Q+ R KD+I GGE I +IE V HP V EA DER
Sbjct: 416 VATIDADGFMQITDRSKDVIKSGGEWISSIDIENVAVAHPAVAEAACIACAHPKWDERPL 475
Query: 178 EVVVANIELKPGASLTQDDIKTYCKGK 204
VVV +PGA +T++++ + +GK
Sbjct: 476 LVVV----KRPGAEVTREELLAFYEGK 498
>gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated.
Length = 471
Score = 77.0 bits (190), Expect = 1e-16
Identities = 43/115 (37%), Positives = 59/115 (51%), Gaps = 6/115 (5%)
Query: 74 VKVVDKKGNIVPMG--MCGEVCYRGYNVMLGYYGEENKILE---NDEWFPSGDFFILHEN 128
++VD+ G VP GE+ RG + GY + D WF +GD ++ +
Sbjct: 304 TRLVDEDGGPVPHDGETVGELQVRGPTLFDGYLNRPDATAAAFTADGWFRTGDVAVVDPD 363
Query: 129 GYGQVVGRIK-DIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVA 182
G ++VGR D+I GG I EIE L HP V EA V GVPD+ LG+ +VA
Sbjct: 364 GMHRIVGRESTDLIKSGGYRIGAGEIETALLGHPGVREAAVVGVPDDDLGQRIVA 418
>gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated.
Length = 579
Score = 77.0 bits (190), Expect = 1e-16
Identities = 36/117 (30%), Positives = 66/117 (56%), Gaps = 6/117 (5%)
Query: 73 IVKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEE--NKILENDEWFPSGDFFILHENGY 130
+++ ++ G +P + G +C RG ++M GY+ +E +L D W +GD L +GY
Sbjct: 395 EIEIRNEAGMPLPERVVGHICVRGPSLMSGYFRDEESQDVLAADGWLDTGDLGYL-LDGY 453
Query: 131 GQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVV--EAQVYGVPDERLGEVVVANIE 185
+ GR KD+II G NI P++IE++ + P++ +A + + E GE +V ++
Sbjct: 454 LYITGRAKDLIIINGRNIWPQDIEWIAEQEPELRSGDAAAFSIAQEN-GEKIVLLVQ 509
>gnl|CDD|236071 PRK07638, PRK07638, acyl-CoA synthetase; Validated.
Length = 487
Score = 76.7 bits (189), Expect = 1e-16
Identities = 66/236 (27%), Positives = 91/236 (38%), Gaps = 59/236 (25%)
Query: 9 EKCTVLYGTPTMY-------------VDLISS--------IQPLTEEMPNI-------AE 40
E +V+Y PTM + +ISS + + P A
Sbjct: 230 ENISVMYTVPTMLESLYKENRVIENKMKIISSGAKWEAEAKEKIKNIFPYAKLYEFYGAS 289
Query: 41 ELSSPVIALT----------AGAPCSPTLFNKIRDTFGIKHLIVKVVDKKGNIVPMGMCG 90
ELS V AL G P + V++ ++ G V G G
Sbjct: 290 ELSF-VTALVDEESERRPNSVGRPFHN--------------VQVRICNEAGEEVQKGEIG 334
Query: 91 EVCYRGYNVMLGYYGEENKILEN--DEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENI 148
V + +GY E D W D E G+ +VGR K++I+ GG NI
Sbjct: 335 TVYVKSPQFFMGYIIGGVLARELNADGWMTVRDVGYEDEEGFIYIVGREKNMILFGGINI 394
Query: 149 IPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCKGK 204
P+EIE VL HP V E V GVPD GE VA I+ S T+ +K++C +
Sbjct: 395 FPEEIESVLHEHPAVDEIVVIGVPDSYWGEKPVAIIK----GSATKQQLKSFCLQR 446
>gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS)
of AAE_MA like. MACS catalyzes the two-step activation
of medium chain fatty acids (containing 4-12 carbons).
The carboxylate substrate first reacts with ATP to form
an acyl-adenylate intermediate, which then reacts with
CoA to produce an acyl-CoA ester. This family of MACS
enzymes is found in archaea and bacteria. It is
represented by the acyl-adenylating enzyme from
Methanosarcina acetivorans (AAE_MA). AAE_MA is most
active with propionate, butyrate, and the branched
analogs: 2-methyl-propionate, butyrate, and pentanoate.
The specific activity is weaker for smaller or larger
acids.
Length = 537
Score = 76.7 bits (189), Expect = 2e-16
Identities = 71/239 (29%), Positives = 100/239 (41%), Gaps = 54/239 (22%)
Query: 6 IVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRD 65
I K T PT+Y LI E++ +LSS TAG P +P +FN ++
Sbjct: 272 IEKYGVTTFCAPPTIYRFLIK------EDLSKY--DLSSLRYCTTAGEPLNPEVFNTFKE 323
Query: 66 TFGIKHL--------------------------------IVKVVDKKGNIVPMGMCGEVC 93
GIK + + ++D G +G GE+
Sbjct: 324 KTGIKLMEGFGQTETTLTIATFPWMEPKPGSMGKPSPGYDIDIIDPDGKSCEVGEEGEIV 383
Query: 94 YR---GYNVML--GYYGEENKILE--NDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGE 146
R G + L GYY + + E +D ++ +GD + E+GY VGR D+I G
Sbjct: 384 IRTSDGKPLGLFMGYYRDPERTAEVWHDGYYHTGDTAWMDEDGYLWFVGRADDLIKSSGY 443
Query: 147 NIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIEL----KPGASLT---QDDIK 198
I P E+E L HP V+E V GVPD G+VV A I L +P L QD +K
Sbjct: 444 RIGPFEVESALIQHPAVLECAVTGVPDPIRGQVVKATIVLTKGYEPSEELKKELQDHVK 502
>gnl|CDD|237374 PRK13388, PRK13388, acyl-CoA synthetase; Provisional.
Length = 540
Score = 76.6 bits (189), Expect = 2e-16
Identities = 33/101 (32%), Positives = 47/101 (46%), Gaps = 2/101 (1%)
Query: 102 GYYGEENKILEN--DEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQT 159
GYY E + SGD +G+ GR D + GEN+ IE +L
Sbjct: 365 GYYNNPEATAERMRHGMYWSGDLAYRDADGWIYFAGRTADWMRVDGENLSAAPIERILLR 424
Query: 160 HPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTY 200
HP + VY VPDER+G+ V+A + L+ GA+ D +
Sbjct: 425 HPAINRVAVYAVPDERVGDQVMAALVLRDGATFDPDAFAAF 465
>gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated.
Length = 529
Score = 76.3 bits (188), Expect = 2e-16
Identities = 41/147 (27%), Positives = 54/147 (36%), Gaps = 20/147 (13%)
Query: 52 GAPCSPTLFNKIRDTFGIKHLIVKVVDKKGNIVPMGMCGE-VCYRGYNVMLGYYGEENKI 110
G C P + GE V G GYY +
Sbjct: 332 GTECPPAED-----------------ADGRLLNADEAIGELVNTAGPGGFEGYYNDPEAD 374
Query: 111 LEN--DEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQV 168
E + SGD +GY GR+ D + GEN+ IE +L +PD E V
Sbjct: 375 AERMRGGVYWSGDLAYRDADGYAYFAGRLGDWMRVDGENLGTAPIERILLRYPDATEVAV 434
Query: 169 YGVPDERLGEVVVANIELKPGASLTQD 195
Y VPD +G+ V+A + L PGA D
Sbjct: 435 YAVPDPVVGDQVMAALVLAPGAKFDPD 461
>gnl|CDD|213294 cd05928, MACS_euk, Eukaryotic Medium-chain acyl-CoA synthetase
(MACS or ACSM). MACS catalyzes the two-step activation
of medium chain fatty acids (containing 4-12 carbons).
The carboxylate substrate first reacts with ATP to form
an acyl-adenylate intermediate, which then reacts with
CoA to produce an acyl-CoA ester. The acyl-CoA is a key
intermediate in many important biosynthetic and
catabolic processes. MACS enzymes are localized to
mitochondria. Two murine MACS family proteins are found
in liver and kidney. In rodents, a MACS member is
detected particularly in the olfactory epithelium and is
called O-MACS. O-MACS demonstrates substrate preference
for the fatty acid lengths of C6-C12.
Length = 530
Score = 75.6 bits (186), Expect = 3e-16
Identities = 42/122 (34%), Positives = 61/122 (50%), Gaps = 7/122 (5%)
Query: 74 VKVVDKKGNIVPMGMCGEVCY-----RGYNVMLGYYGEENKI--LENDEWFPSGDFFILH 126
V+++D GN++P G G++ R + + Y K +++ +GD I+
Sbjct: 354 VQIIDDNGNVLPPGTEGDIGIRVKPTRPFCLFSCYVDNPEKTAATIRGDFYITGDRGIMD 413
Query: 127 ENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIEL 186
E+GY VGR D+I G I P E+E L HP VVE+ V PD GEVV A + L
Sbjct: 414 EDGYFWFVGRADDVINSSGYRIGPFEVESALIEHPAVVESAVVSSPDPIRGEVVKAFVVL 473
Query: 187 KP 188
P
Sbjct: 474 AP 475
>gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual
roles as fatty acid transporters and its activation
enzymes. Fatty acid transport protein (FATP) transports
long-chain or very-long-chain fatty acids across the
plasma membrane. FATPs also have fatty acid CoA
synthetase activity, thus playing dual roles as fatty
acid transporters and its activation enzymes. At least
five copies of FATPs are identified in mammalian cells.
This family also includes prokaryotic FATPs. FATPs are
the key players in the trafficking of exogenous fatty
acids into the cell and in intracellular fatty acid
homeostasis.
Length = 444
Score = 74.6 bits (184), Expect = 8e-16
Identities = 42/120 (35%), Positives = 53/120 (44%), Gaps = 11/120 (9%)
Query: 84 VPMGMCGEVCYRGY--NVMLGYYGE---ENKILEN-----DEWFPSGDFFILHENGYGQV 133
VP G G + N GY + E KIL + D +F +GD GY
Sbjct: 277 VPPGEVGLLLGEITDRNPFDGYTDDEATEKKILRDVFKKGDAYFNTGDLVRRDGFGYFYF 336
Query: 134 VGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERL-GEVVVANIELKPGASL 192
V R+ D GEN+ E+E VL HP V EA VYGV G +A + L PGA+
Sbjct: 337 VDRLGDTFRWKGENVSTTEVEEVLAKHPGVEEANVYGVEVPGTEGRAGMAALTLAPGAAF 396
>gnl|CDD|236019 PRK07445, PRK07445, O-succinylbenzoic acid--CoA ligase; Reviewed.
Length = 452
Score = 74.6 bits (184), Expect = 8e-16
Identities = 32/82 (39%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
Query: 101 LGYYGEENKILENDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTH 160
LGYY + IL++ F + D L GY ++GR II GGEN+ P E+E +
Sbjct: 313 LGYYPQ---ILDSQGIFETDDLGYLDAQGYLHILGRNSQKIITGGENVYPAEVEAAILAT 369
Query: 161 PDVVEAQVYGVPDERLGEVVVA 182
V + V G+PD GEVV A
Sbjct: 370 GLVQDVCVLGLPDPHWGEVVTA 391
>gnl|CDD|236108 PRK07824, PRK07824, O-succinylbenzoic acid--CoA ligase;
Provisional.
Length = 358
Score = 73.5 bits (181), Expect = 1e-15
Identities = 31/85 (36%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Query: 116 WFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDER 175
WF + D L +G V+GR D I GG ++P+ +E L THP V + V+G+PD+R
Sbjct: 235 WFRTDDLGALD-DGVLTVLGRADDAISTGGLTVLPQVVEAALATHPAVADCAVFGLPDDR 293
Query: 176 LGEVVVANIELKPGASLTQDDIKTY 200
LG+ VVA + G + T + ++ +
Sbjct: 294 LGQRVVAAVVGDGGPAPTLEALRAH 318
>gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated.
Length = 540
Score = 74.0 bits (182), Expect = 1e-15
Identities = 50/180 (27%), Positives = 74/180 (41%), Gaps = 35/180 (19%)
Query: 43 SSPVIALTA---------------GAPCSPTLFNKIRDTFGIKHLIVKVVDKKGNIVPMG 87
SS V AL A G P SP + RD G ++P G
Sbjct: 328 SSEVQALVALQPATDPVSVRIEGGGRPASPEARVRARDPQD------------GALLPDG 375
Query: 88 MCGEVCYRGYNVMLGYYGEEN---KILENDEWFPSGDF-FILHENGYGQVVGRIKDIIIR 143
GE+ R ++M GY + + L +D +F +GD + + + R+ D +
Sbjct: 376 ESGEIEIRAPSLMRGYLDNPDATARALTDDGYFRTGDLGYTRGDGQF-VYQTRMGDSLRL 434
Query: 144 GGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGE-VVVANIELKPGASLTQDDIKTYCK 202
GG + P EIE+ L+ P V AQV G R G+ V VA + GAS + + C+
Sbjct: 435 GGFLVNPAEIEHALEALPGVAAAQVVGA--TRDGKTVPVAFVIPTDGASPDEAGLMAACR 492
>gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional.
Length = 579
Score = 73.1 bits (179), Expect = 3e-15
Identities = 45/138 (32%), Positives = 67/138 (48%), Gaps = 8/138 (5%)
Query: 68 GIKHLIVKVVDKKGN----IVPMG--MCGEVCYRGYNVMLGYYGEENKILE--NDEWFPS 119
G+ L + VD K VP GE+ +G ++M GY E W +
Sbjct: 365 GVSILGLADVDVKNKETQESVPRDGKTMGEIVIKGSSIMKGYLKNPKATSEAFKHGWLNT 424
Query: 120 GDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEV 179
GD ++H +G+ ++ R KDIII GGENI E+E VL +P V+E V +P GE
Sbjct: 425 GDVGVIHPDGHVEIKDRSKDIIISGGENISSVEVENVLYKYPKVLETAVVAMPHPTWGET 484
Query: 180 VVANIELKPGASLTQDDI 197
A + L+ G + +D +
Sbjct: 485 PCAFVVLEKGETTKEDRV 502
>gnl|CDD|213283 cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetases similar to
LC-FACS from Thermus thermophiles. This family includes
fatty acyl-CoA synthetases that can activate
medium-chain to long-chain fatty acids. They catalyze
the ATP-dependent acylation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. Fatty
acyl-CoA synthetases are responsible for fatty acid
degradation as well as physiological regulation of
cellular functions via the production of fatty acyl-CoA
esters. The fatty acyl-CoA synthetase from Thermus
thermophiles in this family has been shown to catalyze
the long-chain fatty acid, myristoyl acid, while another
member in this family, the AlkK protein identified in
Pseudomonas oleovorans, targets medium chain fatty
acids. This family also includes an uncharacterized
subgroup of FACS.
Length = 509
Score = 70.9 bits (173), Expect = 1e-14
Identities = 44/158 (27%), Positives = 71/158 (44%), Gaps = 10/158 (6%)
Query: 54 PCSPTLFNKIRDTFGIKHLI--VKVVDKKGNIVPMG--MCGEVCYRGYNVMLGYYGEENK 109
L K + G+ + ++V D++G VP GEV +G + GYYG E
Sbjct: 323 SEEEKLTLKAKT--GLPIPLVRLRVADEEGRPVPKDGKALGEVQLKGPWITGGYYGNEEA 380
Query: 110 ILEN---DEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEA 166
D +F +GD + E GY ++ R+KD+I GGE I ++E L HP V EA
Sbjct: 381 TRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEA 440
Query: 167 QVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCKGK 204
V +P + E +A + + T +++ +
Sbjct: 441 AVVAIPHPKWQERPLAVVVPRG-EKPTPEELNEHLLKA 477
>gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS) similar to mycosubtilin
synthase subunit A (MycA). The adenylation (A) domain
of NRPS recognizes a specific amino acid or hydroxy acid
and activates it as (amino)-acyl adenylate by hydrolysis
of ATP. The activated acyl moiety then forms thioester
to the enzyme-bound cofactor phosphopantetheine of a
peptidyl carrier protein domain. This family includes
NRPS similar to mycosubtilin synthase subunit A (MycA).
Mycosubtilin, which is characterized by a beta-amino
fatty acid moiety linked to the circular heptapeptide
Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin
family of lipopeptide antibiotics. The mycosubtilin
synthase subunit A (MycA) combines functional domains
derived from peptide synthetases, amino transferases,
and fatty acid synthases. Nonribosomal peptide
synthetases are large multifunction enzymes that
synthesize many therapeutically useful peptides. NRPS
has a distinct modular structure in which each module is
responsible for the recognition, activation, and, in
some cases, modification of a single amino acid residue
of the final peptide product. The modules can be
subdivided into domains that catalyze specific
biochemical reactions.
Length = 499
Score = 70.8 bits (174), Expect = 2e-14
Identities = 42/125 (33%), Positives = 60/125 (48%), Gaps = 7/125 (5%)
Query: 69 IKHLIVKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEE---NKILENDEWFPSGDFFIL 125
I +++VD G ++P G + +G NV GYY K + D W +GD L
Sbjct: 320 IDGCEIRIVDDAGEVLPDRTIGHIQIKGDNVTSGYYNNPEATKKSITPDGWLKTGDLGFL 379
Query: 126 HENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVY--GVPDERLG-EVVVA 182
NG + GR KDIII G+N P +IE V + + +V GV DE+ E VV
Sbjct: 380 R-NGRLVITGRAKDIIIVNGQNYYPHDIERVAEQVEGIKLGRVAACGVYDEKEQSEEVVI 438
Query: 183 NIELK 187
+E +
Sbjct: 439 FVEYR 443
>gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain
acyl-CoA synthetase (MACS). MACS catalyzes the two-step
activation of medium chain fatty acids (containing 4-12
carbons). The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. MACS
enzymes are localized to mitochondria.
Length = 433
Score = 70.1 bits (172), Expect = 3e-14
Identities = 42/140 (30%), Positives = 64/140 (45%), Gaps = 10/140 (7%)
Query: 74 VKVVDKKGNIVPMGMCGEVC----YRGYNVMLGYYGEENKILE--NDEWFPSGDFFILHE 127
V ++D +G +P+ GE+ R +MLGY G+ K ++ +GD E
Sbjct: 262 VVLLDDEGKEIPVTE-GEIALDLGDRPIGLMLGYMGDPEKTAAAFRGGYYRTGDKAYRDE 320
Query: 128 NGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELK 187
+GY VGR D+ I P E+E L HP V EA V PD V A I LK
Sbjct: 321 DGYLWFVGRADDVFKSSDYRISPFEVESALLEHPAVAEAAVVPSPDPIRLAVPKAYIVLK 380
Query: 188 PGASLTQD---DIKTYCKGK 204
PG +++ ++ + + +
Sbjct: 381 PGYEPSRELALELFAHVRER 400
>gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE). PrpE catalyzes the
first step of the 2-methylcitric acid cycle for
propionate catabolism. It activates propionate to
propionyl-CoA in a two-step reaction, which proceeds
through a propionyl-AMP intermediate and requires ATP
and Mg2+. In Salmonella enterica, the PrpE protein is
required for growth of S. enterica on propionate and can
substitute for the acetyl-CoA synthetase (Acs) enzyme
during growth on acetate. PrpE can also activate
acetate, 3HP, and butyrate to their corresponding
CoA-thioesters, although with less efficiency.
Length = 607
Score = 69.6 bits (171), Expect = 4e-14
Identities = 37/132 (28%), Positives = 61/132 (46%), Gaps = 8/132 (6%)
Query: 74 VKVVDKKGNIVPMGMCGEVCYRG---YNVMLGYYGEE----NKILENDE-WFPSGDFFIL 125
V+V+D+ G + G G + + +L +G++ L ++ +GD
Sbjct: 412 VQVLDETGEELGPGELGNIVIKLPLPPGCLLTLWGDDERFKKLYLNKFPGYYDTGDSGYK 471
Query: 126 HENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIE 185
E+GY V+GR D+I G + E+E + HPDV E V GV DE G+V + +
Sbjct: 472 DEDGYLFVMGRTDDVINVAGHRLSTGEMEESVLKHPDVAECAVVGVRDELKGQVPLGLVV 531
Query: 186 LKPGASLTQDDI 197
LK + D +
Sbjct: 532 LKDDCKIDADQL 543
>gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily
similar to Acetoacetyl-CoA synthetase. This
uncharacterized acyl-CoA synthetase family is highly
homologous to acetoacetyl-CoA synthetase. However, the
proteins in this family exist in only bacteria and
archaea. AACS is a cytosolic ligase that specifically
activates acetoacetate to its coenzyme A ester by a
two-step reaction. Acetoacetate first reacts with ATP to
form an acyl-adenylate intermediate, which then reacts
with CoA to produce an acyl-CoA ester. This is the first
step of the mevalonate pathway of isoprenoid
biosynthesis via isopentenyl diphosphate. Isoprenoids
are a large class of compounds found in all living
organisms.
Length = 474
Score = 69.2 bits (170), Expect = 5e-14
Identities = 52/167 (31%), Positives = 77/167 (46%), Gaps = 15/167 (8%)
Query: 41 ELSSPVIALTAGAPCSPTLFNKIRDTFGIKHLIVKVVDKKGNIVPMGMCGEVCYRGYNVM 100
E+S ++ P P FN + G+ VVD+ G V G GE+ R
Sbjct: 260 EISGGILGNVPIRPIKPCSFNGP--SPGMD---ADVVDEDGRPVR-GEVGELVVRAPWPG 313
Query: 101 L--GYYGEENKILEN------DEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKE 152
+ G++ + + LE W GD+ ++ E+GY ++GR D I G+ + P E
Sbjct: 314 MTRGFWRDPERYLETYWSRFPGVWV-HGDWALVDEDGYWYILGRSDDTIKVAGKRVGPAE 372
Query: 153 IEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKT 199
IE VL +HP V EA GVPD GE +V + LKPG + +
Sbjct: 373 IESVLNSHPAVAEAAAIGVPDPVKGEAIVCFVVLKPGVTPSAALEAE 419
>gnl|CDD|180289 PRK05851, PRK05851, long-chain-fatty-acid--[acyl-carrier-protein]
ligase; Validated.
Length = 525
Score = 67.1 bits (164), Expect = 3e-13
Identities = 38/91 (41%), Positives = 49/91 (53%), Gaps = 14/91 (15%)
Query: 90 GEVCYRGYNVMLGYYGEENKILENDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENII 149
GE+ RG ++M GY G+ ++ D+WFP+GD L + G V GR K++I G NI
Sbjct: 373 GEIEIRGASMMSGYLGQAP--IDPDDWFPTGDLGYLVDGGL-VVCGRAKELITVAGRNIF 429
Query: 150 PKEIEYVLQTHPDVVEAQVYGVPDERLGEVV 180
P EIE V AQV GV R G VV
Sbjct: 430 PTEIE--------RVAAQVRGV---REGAVV 449
>gnl|CDD|236363 PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase;
Provisional.
Length = 458
Score = 66.8 bits (164), Expect = 4e-13
Identities = 35/108 (32%), Positives = 57/108 (52%), Gaps = 3/108 (2%)
Query: 89 CGEVCYRGYNVMLGYY--GEENKILENDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGE 146
GE+ RG ++ LGY+ G+ ++ ++ WF + D NG ++GR+ ++ GGE
Sbjct: 304 DGEIWLRGASLALGYWRQGQLVPLVNDEGWFATRDRGEWQ-NGELTILGRLDNLFFSGGE 362
Query: 147 NIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQ 194
I P+EIE V+ HP V + V V D G+ VA +E A++
Sbjct: 363 GIQPEEIERVINQHPLVQQVFVVPVADAEFGQRPVAVVESDSEAAVVN 410
>gnl|CDD|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase. This model
describes acetate-CoA ligase (EC 6.2.1.1), also called
acetyl-CoA synthetase and acetyl-activating enzyme. It
catalyzes the reaction ATP + acetate + CoA = AMP +
diphosphate + acetyl-CoA and belongs to the family of
AMP-binding enzymes described by pfam00501.
Length = 625
Score = 66.5 bits (163), Expect = 5e-13
Identities = 42/139 (30%), Positives = 67/139 (48%), Gaps = 15/139 (10%)
Query: 67 FGIKHLIVKVVDKKGNIVPM-GMCGEVCYRGY--NVMLGYYGEENKILENDEWFP----- 118
FGI+ VVD++GN V G G + + ++ YG+ + + D +F
Sbjct: 422 FGIE---PAVVDEEGNPVEGPGEGGYLVIKQPWPGMLRTIYGDHERFV--DTYFSPFPGY 476
Query: 119 --SGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERL 176
+GD ++GY + GR+ D+I G + EIE L +HP V EA V G+PD+
Sbjct: 477 YFTGDGARRDKDGYIWITGRVDDVINVSGHRLGTAEIESALVSHPAVAEAAVVGIPDDIK 536
Query: 177 GEVVVANIELKPGASLTQD 195
G+ + A + LK G +
Sbjct: 537 GQAIYAFVTLKDGYEPDDE 555
>gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein
synthetase (also called 2-acylglycerophosphoethanolamine
acyltransferase, Aas). Acyl-acyl carrier protein
synthase (Aas) is a membrane protein responsible for a
minor pathway of incorporating exogenous fatty acids
into membrane phospholipids. Its in vitro activity is
characterized by the ligation of free fatty acids
between 8 and 18 carbons in length to the acyl carrier
protein sulfydryl group (ACP-SH) in the presence of ATP
and Mg2+. However, its in vivo function is as a
2-acylglycerophosphoethanolamine (2-acyl-GPE)
acyltransferase. The reaction occurs in two steps: the
acyl chain is first esterified to acyl carrier protein
(ACP) via a thioester bond, followed by a second step
where the acyl chain is transferred to a
2-acyllysophospholipid, thus completing the
transacylation reaction. This model represents the
C-terminal domain of the enzyme, which belongs to the
class I adenylate-forming enzyme family, including
acyl-CoA synthetases.
Length = 489
Score = 66.1 bits (162), Expect = 7e-13
Identities = 53/219 (24%), Positives = 83/219 (37%), Gaps = 47/219 (21%)
Query: 2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFN 61
I+ I K T+L GTPT + P E+ SS + +
Sbjct: 227 IAELIRDYKATILCGTPTFLRGYARNAHP---------EDFSSLRLVVAGAEKLPEATRE 277
Query: 62 KIRDTFGIK----------------------------HLI----VKVVDKKGNI-VPMGM 88
+ FGI+ + V++V + + +P+G
Sbjct: 278 LFEEKFGIRILEGYGATECSPVISVNTPMGNKPGTVGRPLPGIEVRIVSPETHEELPIGE 337
Query: 89 CGEVCYRGYNVMLGYYGEENK----ILENDEWFPSGDFFILHENGYGQVVGRIKDIIIRG 144
G + RG NVM GY E K + D W+ +GD + E+G+ +VGR+K G
Sbjct: 338 GGLLLVRGPNVMSGYLNNEEKTSEVEVLGDGWYDTGDIGKIDEDGFLTIVGRLKRFAKIG 397
Query: 145 GENIIPKEIEYVLQTH-PDVVEAQVYGVPDERLGEVVVA 182
GE + +E +L P+ VPDE+ GE +V
Sbjct: 398 GEMVSLTAVEELLSEILPEDSLHAAVEVPDEKKGEKIVL 436
>gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family. Characterized
members of this protein family include benzoate-CoA
ligase, 4-hydroxybenzoate-CoA ligase,
2-aminobenzoate-CoA ligase, etc. Members are related to
fatty acid and acetate CoA ligases.
Length = 508
Score = 66.0 bits (161), Expect = 8e-13
Identities = 55/230 (23%), Positives = 92/230 (40%), Gaps = 44/230 (19%)
Query: 12 TVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGIK- 70
T+ YG PT+Y +++ +P AE+ + +AG + + + FG+
Sbjct: 254 TIFYGVPTLYAAMLAD-----PNLP--AEDQVRLRLCTSAGEALPAEVGQRWQARFGVDI 306
Query: 71 ----------HLI---------------------VKVVDKKGNIVPMGMCGEVCYRGYNV 99
H+ +++V G V G GE+ G +
Sbjct: 307 VDGIGSTEMLHIFLSNLPGDVRYGTSGKPVPGYRLRLVGDGGQDVAAGEPGELLISGPSS 366
Query: 100 MLGYYGEENKILEN--DEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVL 157
Y+ K + EW SGD ++ +++G GR D++ G + P EIE L
Sbjct: 367 ATMYWNNRAKTRDTFQGEWTRSGDKYVRNDDGSYTYAGRTDDMLKVSGIYVSPFEIESAL 426
Query: 158 QTHPDVVEAQVYGVPDERLGEVVVANIELKPGA---SLTQDDIKTYCKGK 204
HP V+EA V GV DE A I L+PG + + ++K + K +
Sbjct: 427 IQHPAVLEAAVVGVEDEDGLIKPKAFIVLRPGQDIDTALETELKEHVKDR 476
>gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA
ligase and acetyl-activating enzyme). Acetyl-CoA
synthetase (ACS) catalyzes the formation of acetyl-CoA
from acetate, CoA, and ATP. Synthesis of acetyl-CoA is
carried out in a two-step reaction. In the first step,
the enzyme catalyzes the synthesis of acetyl-AMP
intermediate from acetate and ATP. In the second step,
acetyl-AMP reacts with CoA to produce acetyl-CoA. This
enzyme is widely present in all living organisms. The
activity of this enzyme is crucial for maintaining the
required levels of acetyl-CoA, a key intermediate in
many important biosynthetic and catabolic processes.
Acetyl-CoA is used in the biosynthesis of glucose, fatty
acids, and cholesterol. It can also be used in the
production of energy in the citric acid cycle.
Eukaryotes typically have two isoforms of acetyl-CoA
synthetase, a cytosolic form involved in biosynthetic
processes and a mitochondrial form primarily involved in
energy generation.
Length = 602
Score = 65.6 bits (161), Expect = 1e-12
Identities = 42/140 (30%), Positives = 68/140 (48%), Gaps = 12/140 (8%)
Query: 67 FGIKHLIVKVVDKKGNIVPMGMCGEVCYRGY--NVMLGYYGEENKILENDEW--FP---- 118
G++ +VD++GN V G+ G + + ++ YG+ + + FP
Sbjct: 411 PGVE---PAIVDEEGNEVEGGVEGYLVIKRPWPGMLRTIYGDHER-YVKTYFSKFPGYYF 466
Query: 119 SGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGE 178
+GD E+GY ++GR+ D+I G + E+E L +HP V EA V G PDE GE
Sbjct: 467 TGDGARRDEDGYYWILGRVDDVINVSGHRLGTAEVESALVSHPAVAEAAVVGKPDEVKGE 526
Query: 179 VVVANIELKPGASLTQDDIK 198
+ A + LK G + + K
Sbjct: 527 AIYAFVTLKDGVEPSDELRK 546
>gnl|CDD|139538 PRK13390, PRK13390, acyl-CoA synthetase; Provisional.
Length = 501
Score = 65.4 bits (159), Expect = 1e-12
Identities = 44/131 (33%), Positives = 57/131 (43%), Gaps = 9/131 (6%)
Query: 64 RDTFGIKHLIVKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILENDE-----WFP 118
R G H + D GN +P G G V + + Y + K W
Sbjct: 327 RSVLGDLH----ICDDDGNELPAGRIGTVYFERDRLPFRYLNDPEKTAAAQHPAHPFWTT 382
Query: 119 SGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGE 178
GD + E+GY + R +II GG NI P+E E L HP V + V GVPD +GE
Sbjct: 383 VGDLGSVDEDGYLYLADRKSFMIISGGVNIYPQETENALTMHPAVHDVAVIGVPDPEMGE 442
Query: 179 VVVANIELKPG 189
V A I+L G
Sbjct: 443 QVKAVIQLVEG 453
>gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 448
Score = 63.8 bits (156), Expect = 3e-12
Identities = 38/112 (33%), Positives = 61/112 (54%), Gaps = 15/112 (13%)
Query: 90 GEVCYRGYNVMLGYYGEENKILENDEWFPSGDFFILHENGYGQVVGRIKDIIIRG-GENI 148
GE+ RG ++MLGY GE D+W+ +GD L E GY + GR K++II G N+
Sbjct: 305 GEILVRG-SLMLGYLGEPPA---TDDWWATGDLGHLDEEGYLYINGRKKNLIITSFGRNV 360
Query: 149 IPKEIEYVLQTHPDVVEAQVYGVPDER--LGEVVVANIELKPGASLTQDDIK 198
P+ +E LQ P + +A V+G D + L ++V P +++ D ++
Sbjct: 361 SPEWVESELQQAPAIAQAVVFG--DAQPFLVALIV------PAPNISDDQLE 404
>gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a
family of nonribosomal peptide synthetases (NRPSs)
synthesizing toxins and antitumor agents. The
adenylation (A) domain of NRPS recognizes a specific
amino acid or hydroxy acid and activates it as an
(amino)-acyl adenylate by hydrolysis of ATP. The
activated acyl moiety then forms a thioester to the
enzyme-bound cofactor phosphopantetheine of a peptidyl
carrier protein domain. This family includes NRPSs that
synthesize toxins and antitumor agents; for example,
TubE for Tubulysine, CrpA for cryptophycin, TdiA for
terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for
Valinomycin. Nonribosomal peptide synthetases are large
multifunctional enzymes which synthesize many
therapeutically useful peptides. NRPS has a distinct
modular structure in which each module is responsible
for the recognition, activation, and, in some cases,
modification of a single amino acid residue of the final
peptide product. The modules can be subdivided into
domains that catalyze specific biochemical reactions.
Length = 560
Score = 63.5 bits (155), Expect = 5e-12
Identities = 35/95 (36%), Positives = 50/95 (52%), Gaps = 8/95 (8%)
Query: 74 VKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYG--EEN-KILENDEWFPSGDFFILHENGY 130
+++VD+ G ++P G G + RG V GYY E N + D WF +GD LH+
Sbjct: 385 IRIVDEDGALLPEGEVGRLQVRGPTVTSGYYRNPEANAEAFTEDGWFRTGDLGFLHD--- 441
Query: 131 GQVV--GRIKDIIIRGGENIIPKEIEYVLQTHPDV 163
G++ GR KD+II G N EIE ++ P V
Sbjct: 442 GRLTITGREKDMIIINGVNYYNHEIEAAVEQVPGV 476
>gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA).
DltA belongs to the class I AMP-forming adenylation
domain superfamily, which also includes acetyl-CoA
synthetase, luciferase, and the adenylation domains of
non-ribosomal synthetases. It catalyzes the two-step
activation reaction of D-alanine: the formation of a
substrate-AMP molecule as an intermediate, and then the
transfer of the amino acid adenylate to teichoic acid in
the biosynthesis of lipoteichoic acid (LTA) and wall
teichoic acid (WTA) in gram-positive bacteria.
Length = 447
Score = 63.0 bits (154), Expect = 7e-12
Identities = 43/138 (31%), Positives = 58/138 (42%), Gaps = 7/138 (5%)
Query: 71 HLIVKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEENK------ILENDEWFPSGDFFI 124
L ++D+ G VP G GE+ G V GY K E W+ +GD
Sbjct: 280 GLRALILDEDGRPVPPGEEGELVIAGPQVSPGYLNNPEKTAKAFFQDEGQRWYRTGDLVY 339
Query: 125 LHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANI 184
L ++G +GR I G I +EIE L+ P V EA V VP +VA +
Sbjct: 340 LEDDGLLVYLGRKDFQIKLHGYRIELEEIEAALRALPGVEEAVVLPVPKGEKVVRLVAFV 399
Query: 185 ELKPGASLTQDDIKTYCK 202
K GA T+ +K K
Sbjct: 400 VGKEGALDTK-ALKKELK 416
>gnl|CDD|180293 PRK05857, PRK05857, acyl-CoA synthetase; Validated.
Length = 540
Score = 63.1 bits (153), Expect = 7e-12
Identities = 35/98 (35%), Positives = 51/98 (52%), Gaps = 6/98 (6%)
Query: 100 MLGYYGEENKILE--NDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVL 157
MLGY+ + E D W +GD E+G+ + GR ++II GG NI P E++ +
Sbjct: 385 MLGYWNNPERTAEVLIDGWVNTGDLLERREDGFFYIKGRSSEMIICGGVNIAPDEVDRIA 444
Query: 158 QTHPDVVEAQVYGVPDERLGEV----VVANIELKPGAS 191
+ V EA Y +PDE G + VVA+ EL A+
Sbjct: 445 EGVSGVREAACYEIPDEEFGALVGLAVVASAELDESAA 482
>gnl|CDD|236091 PRK07768, PRK07768, long-chain-fatty-acid--CoA ligase; Validated.
Length = 545
Score = 61.2 bits (149), Expect = 3e-11
Identities = 33/83 (39%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Query: 74 VKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILENDE--WFPSGDFFILHENGYG 131
V+VVD+ G ++P G + RG +V GY + I D W +GD L E G
Sbjct: 371 VRVVDEDGQVLPPRGVGVIELRGESVTPGYLTMDGFIPAQDADGWLDTGDLGYLTEEGEV 430
Query: 132 QVVGRIKDIIIRGGENIIPKEIE 154
V GR+KD+II G NI P +IE
Sbjct: 431 VVCGRVKDVIIMAGRNIYPTDIE 453
>gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA
synthetase (VL-FACS). This family of very long-chain
fatty acid CoA synthetase is named bubblegum because
Drosophila melanogaster mutant bubblegum (BGM) has
elevated levels of very-long-chain fatty acids (VLCFA)
caused by a defective gene of this family. The human
homolog (hsBG) has been characterized as a very long
chain fatty acid CoA synthetase that functions
specifically in the brain; hsBG may play a central role
in brain VLCFA metabolism and myelinogenesis. VL-FACS is
involved in the first reaction step of very long chain
fatty acid degradation. It catalyzes the formation of
fatty acyl-CoA in a two-step reaction: the formation of
a fatty acyl-AMP molecule as an intermediate, and the
formation of a fatty acyl-CoA. Free fatty acids must be
"activated" to their CoA thioesters before participating
in most catabolic and anabolic reactions.
Length = 594
Score = 60.9 bits (148), Expect = 4e-11
Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 90 GEVCYRGYNVMLGYYGEENKI---LENDEWFPSGDFFILHENGYGQVVGRIKDIIIR-GG 145
GE+C G +V +GY E K ++ D W SGD L ++G+ + GRIK++II GG
Sbjct: 391 GEICIWGRHVFMGYLNMEEKTEEAIDEDGWLHSGDLGFLDDDGFLYITGRIKELIITAGG 450
Query: 146 ENIIPKEIE 154
EN+ P IE
Sbjct: 451 ENVPPVPIE 459
>gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS), including salinosporamide A
polyketide synthase. The adenylation (A) domain of NRPS
recognizes a specific amino acid or hydroxy acid and
activates it as an (amino) acyl adenylate by hydrolysis
of ATP. The activated acyl moiety then forms a thioester
to the enzyme-bound cofactor phosphopantetheine of a
peptidyl carrier protein domain. NRPSs are large
multifunctional enzymes which synthesize many
therapeutically useful peptides in bacteria and fungi
via a template-directed, nucleic acid independent
nonribosomal mechanism. These natural products include
antibiotics, immunosuppressants, plant and animal
toxins, and enzyme inhibitors. NRPS has a distinct
modular structure in which each module is responsible
for the recognition, activation, and in some cases,
modification of a single amino acid residue of the final
peptide product. The modules can be subdivided into
domains that catalyze specific biochemical reactions.
This family includes the myxovirescin (TA) antibiotic
biosynthetic gene in Myxococcus xanthus; TA production
plays a role in predation. It also includes the
salinosporamide A polyketide synthase which is involved
in the biosynthesis of salinosporamide A, a marine
microbial metabolite whose chlorine atom is crucial for
potent proteasome inhibition and anticancer activity.
Length = 438
Score = 59.5 bits (145), Expect = 1e-10
Identities = 41/140 (29%), Positives = 60/140 (42%), Gaps = 20/140 (14%)
Query: 76 VVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILENDEWFP-------------SGDF 122
V+D+ VP G+ GE+ G V GY G E F +GD
Sbjct: 271 VLDEDLQPVPPGVPGELYIGGDGVARGYLGRP---ELTAERFVPDPFDDPGGRLYRTGDL 327
Query: 123 FILHENGYGQVVGRIKD-IIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEV-V 180
+G + +GR D + IRG I EIE L+ HP V +A V V +E G+ +
Sbjct: 328 VRWRPDGRLEYLGRADDQVKIRG-FRIELGEIEAALRAHPGVADAVVV-VREEGPGDQRL 385
Query: 181 VANIELKPGASLTQDDIKTY 200
VA + K GA+ + ++
Sbjct: 386 VAYVVPKAGAAPDAEALRAA 405
>gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide
synthetases (NRPS). The adenylation (A) domain of NRPS
recognizes a specific amino acid or hydroxy acid and
activates it as an (amino) acyl adenylate by hydrolysis
of ATP. The activated acyl moiety then forms a thioester
bond to the enzyme-bound cofactor phosphopantetheine of
a peptidyl carrier protein domain. NRPSs are large
multifunctional enzymes which synthesize many
therapeutically useful peptides in bacteria and fungi
via a template-directed, nucleic acid independent
nonribosomal mechanism. These natural products include
antibiotics, immunosuppressants, plant and animal
toxins, and enzyme inhibitors. NRPS has a distinct
modular structure in which each module is responsible
for the recognition, activation, and in some cases,
modification of a single amino acid residue of the final
peptide product. The modules can be subdivided into
domains that catalyze specific biochemical reactions.
Length = 445
Score = 59.0 bits (144), Expect = 2e-10
Identities = 51/247 (20%), Positives = 86/247 (34%), Gaps = 58/247 (23%)
Query: 6 IVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRD 65
+ + + TVL+ P++ + L + + L S + + G L + R+
Sbjct: 180 LREHRITVLHLVPSLL-------RALLDALE--PAALPSLRLVIVGGEALPAELVRRWRE 230
Query: 66 TFGIKHLI-------------------------------------VKVVDKKGNIVPMGM 88
F L+ V V+D+ VP+G+
Sbjct: 231 LFPGARLVNAYGPTETTVDVTYHEVDPDDLDGGSVPIGRPIANTRVYVLDEDLRPVPVGV 290
Query: 89 CGEVCYRGYNVMLGYYGEE----NKILENDEWFP------SGDFFILHENGYGQVVGRIK 138
GE+ G V GY + + + P +GD +G + +GR
Sbjct: 291 PGELYIGGAGVARGYLNRPELTAERFVPDPFGGPGERLYRTGDLARWLPDGNLEFLGRAD 350
Query: 139 D-IIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDI 197
D + IRG I EIE L HP V EA V D + +VA + GA L ++
Sbjct: 351 DQVKIRG-YRIELGEIEAALLAHPGVREAVVVAREDGAGEKRLVAYVVPAAGAELDAAEL 409
Query: 198 KTYCKGK 204
+ + +
Sbjct: 410 RAFLAER 416
>gnl|CDD|234677 PRK00174, PRK00174, acetyl-CoA synthetase; Provisional.
Length = 637
Score = 58.2 bits (142), Expect = 4e-10
Identities = 42/147 (28%), Positives = 63/147 (42%), Gaps = 26/147 (17%)
Query: 67 FGIKHLIVKVVDKKGNIVPMGMCGEVCYRGYNV--------MLGYYGEENKILENDEWFP 118
GI+ VVD++GN + G G V M YG+ + + +F
Sbjct: 431 PGIQ---PAVVDEEGNPLE----GGE--GGNLVIKDPWPGMMRTIYGDHERFV--KTYFS 479
Query: 119 -------SGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGV 171
+GD E+GY + GR+ D++ G + EIE L HP V EA V G
Sbjct: 480 TFKGMYFTGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKVAEAAVVGR 539
Query: 172 PDERLGEVVVANIELKPGASLTQDDIK 198
PD+ G+ + A + LK G + + K
Sbjct: 540 PDDIKGQGIYAFVTLKGGEEPSDELRK 566
>gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA
synthetase (LC-FACS). The members of this family are
eukaryotic fatty acid CoA synthetases that activate
fatty acids with chain lengths of 12 to 20. LC-FACS
catalyzes the formation of fatty acyl-CoA in a two-step
reaction: the formation of a fatty acyl-AMP molecule as
an intermediate, and the formation of a fatty acyl-CoA.
This is a required step before free fatty acids can
participate in most catabolic and anabolic reactions.
Organisms tend to have multiple isoforms of LC-FACS
genes with multiple splice variants. For example, nine
genes are found in Arabidopsis and six genes are
expressed in mammalian cells.
Length = 539
Score = 56.8 bits (138), Expect = 9e-10
Identities = 35/124 (28%), Positives = 60/124 (48%), Gaps = 9/124 (7%)
Query: 90 GEVCYRGYNVMLGYYGEENK---ILENDEWFPSGDFFILHENGYGQVVGRIKDII-IRGG 145
GE+C RG NV GYY K + D WF +GD +G +++ R K++ + G
Sbjct: 351 GEICIRGPNVFKGYYKNPEKTAEAFDEDGWFHTGDIGEWLPDGTLKIIDRKKNLFKLSQG 410
Query: 146 ENIIPKEIEYVLQTHPDVVEAQVYGVPDE-RLGEVVVANIE-LKPGAS---LTQDDIKTY 200
E + +++E + ++ P V + VYG + L +VV + + L+ A+ D +
Sbjct: 411 EYVALEKLENIYKSSPLVDQICVYGDSLKSFLVAIVVPDEDVLEKWAAENGGGGGDFEEL 470
Query: 201 CKGK 204
C K
Sbjct: 471 CNNK 474
>gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS), including Streptoalloteichus
tallysomycin biosynthesis genes. The adenylation (A)
domain of NRPS recognizes a specific amino acid or
hydroxy acid and activates it as an (amino) acyl
adenylate by hydrolysis of ATP. The activated acyl
moiety then forms a thioester to the enzyme-bound
cofactor phosphopantetheine of a peptidyl carrier
protein domain. NRPSs are large multifunctional enzymes
which synthesize many therapeutically useful peptides in
bacteria and fungi via a template-directed, nucleic acid
independent nonribosomal mechanism. These natural
products include antibiotics, immunosuppressants, plant
and animal toxins, and enzyme inhibitors. NRPS has a
distinct modular structure in which each module is
responsible for the recognition, activation, and in some
cases, modification of a single amino acid residue of
the final peptide product. The modules can be subdivided
into domains that catalyze specific biochemical
reactions. This family includes the TLM biosynthetic
gene cluster from Streptoalloteichus that consists of
nine NRPS genes; the N-terminal module of TlmVI (NRPS-5)
and the starter module of BlmVI (NRPS-5) are comprised
of the acyl CoA ligase (AL) and acyl carrier protein
(ACP)-like domains, which are thought to be involved in
the biosynthesis of the beta-aminoalaninamide moiety.
Length = 476
Score = 56.8 bits (138), Expect = 1e-09
Identities = 35/134 (26%), Positives = 57/134 (42%), Gaps = 12/134 (8%)
Query: 76 VVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEENK-------ILENDEWFPSGDFFILHEN 128
V+D+ G P + GE+ G V LGY+G+ + + +GD +
Sbjct: 313 VLDEDGRDCPDWVPGELYIGGVGVALGYWGDPELTAERFITHRTGERLYRTGDLGRYRPD 372
Query: 129 GYGQVVGRIKD--IIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIEL 186
G + +GR D + IR G + EIE L HP V A V V D + + A +
Sbjct: 373 GTIEFLGR-ADHQVKIR-GYRVELGEIEAALARHPGVQRAVVVVVGDGG-AKALAAFVVA 429
Query: 187 KPGASLTQDDIKTY 200
+ GA++ ++
Sbjct: 430 EDGAAVDAAVLRAA 443
>gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase
A-associated. This group of proteins contains an
AMP-binding domain (pfam00501) associated with acyl
CoA-ligases. These proteins are generally found in
genomes containing the exosortase/PEP-CTERM protein
expoert system , specifically the type 1 variant of this
system described by the Genome Property GenProp0652.
When found in this context they are invariably present
next to a decarboxylase enzyme. A number of sequences
from Burkholderia species also hit this model, but the
genomic context is obviously different. The hypothesis
of a constant substrate for this family is only strong
where the exosortase context is present.
Length = 517
Score = 56.7 bits (137), Expect = 1e-09
Identities = 42/149 (28%), Positives = 63/149 (42%), Gaps = 14/149 (9%)
Query: 68 GIKHLIVKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILENDEWFP--------- 118
I + V V+ + G+ G GE+ +RG V +GY+ + K E P
Sbjct: 335 AIPNAEVLVLREDGSECAPGEEGELVHRGALVAMGYWNDPEKTAERFRPLPPFPGELHLP 394
Query: 119 -----SGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPD 173
SGD E G+ VGR ++I G + P E+E V V EA +GVPD
Sbjct: 395 ELAVWSGDTVRRDEEGFLYFVGRRDEMIKTSGYRVSPTEVEEVAYATGLVAEAVAFGVPD 454
Query: 174 ERLGEVVVANIELKPGASLTQDDIKTYCK 202
LG+ +V + G L + + C+
Sbjct: 455 PTLGQAIVLVVTPPGGEELDRAALLAECR 483
>gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated.
Length = 600
Score = 55.7 bits (135), Expect = 3e-09
Identities = 36/95 (37%), Positives = 43/95 (45%), Gaps = 12/95 (12%)
Query: 107 ENKILEN-----DEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHP 161
E KIL + D WF +GD G+ Q V R+ D GEN+ E+E L P
Sbjct: 426 EKKILRDVFKKGDAWFNTGDLMRDDGFGHAQFVDRLGDTFRWKGENVATTEVENALSGFP 485
Query: 162 DVVEAQVYGVP----DERLGEVVVANIELKPGASL 192
V EA VYGV D R G +A I L GA
Sbjct: 486 GVEEAVVYGVEVPGTDGRAG---MAAIVLADGAEF 517
>gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated.
Length = 576
Score = 55.2 bits (133), Expect = 4e-09
Identities = 28/80 (35%), Positives = 42/80 (52%)
Query: 114 DEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPD 173
D W +GD + +G+ + R +D+I GGE I ++E + P+VVE V G PD
Sbjct: 429 DGWLRTGDVGSVTRDGFLTIHDRARDVIRSGGEWIYSAQLENYIMAAPEVVECAVIGYPD 488
Query: 174 ERLGEVVVANIELKPGASLT 193
++ GE +A L PG T
Sbjct: 489 DKWGERPLAVTVLAPGIEPT 508
>gnl|CDD|131369 TIGR02316, propion_prpE, propionate--CoA ligase. This family
contains one of three readily separable clades of
proteins in the group of acetate and propionate--CoA
ligases. Characterized members of this family act on
propionate. From propionyl-CoA, there is a cyclic
degradation pathway: it is ligated by PrpC to the TCA
cycle intermediate oxaloacetate, acted upon further by
PrpD and an aconitase, then cleaved by PrpB to pyruvate
and the TCA cycle intermediate succinate.
Length = 628
Score = 53.8 bits (129), Expect = 1e-08
Identities = 29/80 (36%), Positives = 40/80 (50%)
Query: 117 FPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERL 176
+ S D+ I E+GY ++GR D+I G + +EIE + +HP V E V GV DE
Sbjct: 474 YSSFDWGIRDEDGYTFILGRTDDVINVAGHRLGTREIEESVSSHPSVAEVAVVGVHDELK 533
Query: 177 GEVVVANIELKPGASLTQDD 196
G+V V LK S
Sbjct: 534 GQVAVVFAILKESDSAGDAH 553
>gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS), including Bacillus subtilis
termination module Surfactin (SrfA-C). The adenylation
(A) domain of NRPS recognizes a specific amino acid or
hydroxy acid and activates it as an (amino) acyl
adenylate by hydrolysis of ATP. The activated acyl
moiety then forms a thioester to the enzyme-bound
cofactor phosphopantetheine of a peptidyl carrier
protein domain. NRPSs are large multifunctional enzymes
which synthesize many therapeutically useful peptides in
bacteria and fungi via a template-directed, nucleic acid
independent nonribosomal mechanism. These natural
products include antibiotics, immunosuppressants, plant
and animal toxins, and enzyme inhibitors. NRPS has a
distinct modular structure in which each module is
responsible for the recognition, activation, and, in
some cases, modification of a single amino acid residue
of the final peptide product. The modules can be
subdivided into domains that catalyze specific
biochemical reactions. This family includes the
adenylation domain of the Bacillus subtilis termination
module (Surfactin domain, SrfA-C) which recognizes a
specific amino acid building block, which is then
activated and transferred to the terminal thiol of the
4'-phosphopantetheine (Ppan) arm of the downstream
peptidyl carrier protein (PCP) domain.
Length = 474
Score = 52.2 bits (126), Expect = 3e-08
Identities = 38/145 (26%), Positives = 65/145 (44%), Gaps = 15/145 (10%)
Query: 69 IKHLIVKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGE---------ENKILENDEWFPS 119
I + V ++D++G VP+G+ GE+ G + LGY + + + +
Sbjct: 303 IPNTTVYILDEEGQPVPIGVPGELYVGGDGLALGYLNRPELTAERFVPDPFGPGERLYRT 362
Query: 120 GDFFILHENGYGQVVGRIKDII-IRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGE 178
GD +G + +GRI + IR G I EIE L HP V EA V V ++ G+
Sbjct: 363 GDLARWRPDGNIEFLGRIDRQVKIR-GFRIELGEIEQALLQHPGVREAAVL-VREDAAGD 420
Query: 179 V-VVANIELKPGASLTQDDIKTYCK 202
+VA + +L +++ +
Sbjct: 421 KRLVAY--VVARGALDAAELRAHLA 443
>gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related
proteins [Secondary metabolites biosynthesis, transport,
and catabolism].
Length = 642
Score = 51.9 bits (124), Expect = 5e-08
Identities = 32/200 (16%), Positives = 59/200 (29%), Gaps = 46/200 (23%)
Query: 2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFN 61
+ + + TVL P + L+ + L+ G L
Sbjct: 449 LLELLEAQGITVLLLVPLLLRLLLLAALAPDL-----ISPCERLRQLLSGGEALPLALVQ 503
Query: 62 KIRDTFGIKHLI------------------------------------VKVVDKKGNIVP 85
++ + + + ++D+ +P
Sbjct: 504 RLLQLAALARRLLNLYGPTEATLDAPSFPISAELESRVPIGRPVANTQLYILDQGLRPLP 563
Query: 86 MGMCGEVCYRGYNVMLGYYGEENKILE---NDEWFPSGDFFILHENGYGQVVGRIKDII- 141
+G+ GE+ G + LGY + E + +GD +G + +GR +
Sbjct: 564 LGVPGELYIAGLGLALGYLNRPDLTAERFIALRLYRTGDLARPLADGALEYLGRKDSQVK 623
Query: 142 IRGGENIIPKEIEYVLQTHP 161
IR G I EIE L P
Sbjct: 624 IR-GFRIELGEIEAALAEQP 642
>gnl|CDD|182517 PRK10524, prpE, propionyl-CoA synthetase; Provisional.
Length = 629
Score = 51.5 bits (124), Expect = 6e-08
Identities = 27/76 (35%), Positives = 39/76 (51%)
Query: 121 DFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVV 180
D+ I +GY ++GR D+I G + +EIE + +HP V E V GV D G+V
Sbjct: 479 DWGIRDADGYYFILGRTDDVINVAGHRLGTREIEESISSHPAVAEVAVVGVKDALKGQVA 538
Query: 181 VANIELKPGASLTQDD 196
VA + K SL +
Sbjct: 539 VAFVVPKDSDSLADRE 554
>gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA
synthetase (LC-FACS), including Marinobacter
hydrocarbonoclasticus isoprenoid Coenzyme A synthetase.
The members of this family are bacterial long-chain
fatty acid CoA synthetase. Marinobacter
hydrocarbonoclasticus isoprenoid Coenzyme A synthetase
in this family is involved in the synthesis of
isoprenoid wax ester storage compounds when grown on
phytol as the sole carbon source. LC-FACS catalyzes the
formation of fatty acyl-CoA in a two-step reaction: the
formation of a fatty acyl-AMP molecule as an
intermediate, and the formation of a fatty acyl-CoA.
Free fatty acids must be "activated" to their CoA
thioesters before participating in most catabolic and
anabolic reactions.
Length = 504
Score = 50.3 bits (121), Expect = 2e-07
Identities = 38/154 (24%), Positives = 63/154 (40%), Gaps = 25/154 (16%)
Query: 42 LSSPVIALTAGAPCSPTL---FNKI----------RDTFGIKHLIVKVVDKKGNI-VPMG 87
L +A + AP P L + K+ + F L + G + P+
Sbjct: 274 LDQARLAGSGAAPMPPALIAWYRKLGLPICEGYGMTENFAYSTLNYPGDRRIGTVGKPIP 333
Query: 88 MC-------GEVCYRGYNVMLGYYGEENKILEN---DEWFPSGDFFILHENGYGQVVGRI 137
GE+ R +M GYY + K E D W +GD + E+G+ ++ GR+
Sbjct: 334 GVELKISEDGEILIRSPGLMSGYYKDPEKTAEAFTEDGWLHTGDKGEIDEDGFLKITGRV 393
Query: 138 KDII-IRGGENIIPKEIEYVLQTHPDVVEAQVYG 170
K++ G+ + P IE +L +P V + V G
Sbjct: 394 KELFKTSKGKYVAPAPIENLLSANPHVEQVCVVG 427
>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine
acyltransferase; Validated.
Length = 1146
Score = 50.3 bits (121), Expect = 2e-07
Identities = 36/118 (30%), Positives = 53/118 (44%), Gaps = 9/118 (7%)
Query: 73 IVKVVD-KKGNIVPMGMCGEVCYRGYNVMLGYYGEENK----ILENDE--WFPSGDFFIL 125
V++VD + +P G G + G VM GY G+ K I + D W+ +GD L
Sbjct: 970 AVRIVDPETFEELPPGEDGLILIGGPQVMKGYLGDPEKTAEVIKDIDGIGWYVTGDKGHL 1029
Query: 126 HENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQT--HPDVVEAQVYGVPDERLGEVVV 181
E+G+ + R GGE + +E L + V V VPDE+ GE +V
Sbjct: 1030 DEDGFLTITDRYSRFAKIGGEMVPLGAVEEELAKALGGEEVVFAVTAVPDEKKGEKLV 1087
>gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase;
Provisional.
Length = 1140
Score = 50.0 bits (120), Expect = 2e-07
Identities = 50/170 (29%), Positives = 74/170 (43%), Gaps = 25/170 (14%)
Query: 43 SSPVIALTAGAPCSPTLFNKI----RDTFGIKHLIVKVVDKKGNIVPMGMCGEVCYRGYN 98
++PVIA + + NK R GI++ + V G + G G + RG N
Sbjct: 944 TAPVIA------LNTPMHNKAGTVGRLLPGIEYRLEPV---PG--IDEG--GRLFVRGPN 990
Query: 99 VMLGYYGEENK-ILE--NDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIE- 154
VMLGY EN +LE D W+ +GD + E G+ + GR K GE I +E
Sbjct: 991 VMLGYLRAENPGVLEPPADGWYDTGDIVTIDEEGFITIKGRAKRFAKIAGEMISLAAVEE 1050
Query: 155 YVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCKGK 204
+ PD + A V +PD R GE ++ L + T+ + K
Sbjct: 1051 LAAELWPDALHAAVS-IPDARKGERIIL---LTTASDATRAAFLAHAKAA 1096
>gnl|CDD|180374 PRK06060, PRK06060, acyl-CoA synthetase; Validated.
Length = 705
Score = 49.6 bits (118), Expect = 3e-07
Identities = 42/184 (22%), Positives = 73/184 (39%), Gaps = 24/184 (13%)
Query: 12 TVLYGTPTMYVDLISSIQPLT-----------EEM-PNIAEELSS-----PVIALTAGAP 54
+VLYG P + +I S P + E + +AE L P++
Sbjct: 238 SVLYGVPNFFARVIDSCSPDSFRSLRCVVSAGEALELGLAERLMEFFGGIPILDGIGSTE 297
Query: 55 CSPTLFNKIRDTFGIKHL-------IVKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEE 107
T + D + + L ++VV G G+ G++ RG + GY+
Sbjct: 298 VGQTFVSNRVDEWRLGTLGRVLPPYEIRVVAPDGTTAGPGVEGDLWVRGPAIAKGYWNRP 357
Query: 108 NKILENDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQ 167
+ + N+ W + D + +G+ R D + GG N+ P+E+E ++ V EA
Sbjct: 358 DSPVANEGWLDTRDRVCIDSDGWVTYRCRADDTEVIGGVNVDPREVERLIIEDEAVAEAA 417
Query: 168 VYGV 171
V V
Sbjct: 418 VVAV 421
>gnl|CDD|178337 PLN02736, PLN02736, long-chain acyl-CoA synthetase.
Length = 651
Score = 49.3 bits (118), Expect = 3e-07
Identities = 39/122 (31%), Positives = 62/122 (50%), Gaps = 9/122 (7%)
Query: 90 GEVCYRGYNVMLGYYGEENK---ILENDEWFPSGDFFILHENGYGQVVGRIKDII-IRGG 145
GE+C RG + GYY +E + +++ D W +GD + G +++ R K+I + G
Sbjct: 459 GEICVRGPIIFKGYYKDEVQTREVIDEDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQG 518
Query: 146 ENIIPKEIEYVLQTHPDVVEAQVYGVP-DERLGEVVVANIE-LKPGAS---LTQDDIKTY 200
E I P++IE V V + VYG + L VVV + E LK A+ + +D+K
Sbjct: 519 EYIAPEKIENVYAKCKFVAQCFVYGDSLNSSLVAVVVVDPEVLKAWAASEGIKYEDLKQL 578
Query: 201 CK 202
C
Sbjct: 579 CN 580
>gnl|CDD|213303 cd05937, FATP_chFAT1_like, Uncharacterized subfamily of
bifunctional fatty acid transporter/very-long-chain
acyl-CoA synthetase in fungi. Fatty acid transport
protein (FATP) transports long-chain or very-long-chain
fatty acids across the plasma membrane. FATPs also have
fatty acid CoA synthetase activity, thus playing dual
roles as fatty acid transporters and its activation
enzymes. FATPs are the key players in the trafficking of
exogenous fatty acids into the cell and in intracellular
fatty acid homeostasis. Members of this family are
fungal FATPs, including FAT1 from Cochliobolus
heterostrophus.
Length = 468
Score = 49.0 bits (117), Expect = 5e-07
Identities = 42/140 (30%), Positives = 59/140 (42%), Gaps = 22/140 (15%)
Query: 78 DKKGNIV--PMGMCGEVCYR--GYNVML--GYYGEEN----KILEN-----DEWFPSGDF 122
K G V P+G GE+ R N L GY E+ K+L + D W+ +GD
Sbjct: 286 PKTGFCVRAPVGEPGEMLGRVRFKNRELFQGYLKNEDATESKLLRDVFRKGDIWYRTGDL 345
Query: 123 FILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVP----DERLGE 178
+G + R+ D EN+ E+ VL P V EA VYGV D R G
Sbjct: 346 LRQDADGRWYFLDRLGDTFRWKSENVSTGEVADVLGAIPSVAEANVYGVKVPGYDGRAG- 404
Query: 179 VVVANIELKPGASLTQDDIK 198
A I L+ +++ + K
Sbjct: 405 --CAAITLEESSAVETEFTK 422
>gnl|CDD|181109 PRK07769, PRK07769, long-chain-fatty-acid--CoA ligase; Validated.
Length = 631
Score = 48.6 bits (116), Expect = 8e-07
Identities = 32/125 (25%), Positives = 55/125 (44%), Gaps = 28/125 (22%)
Query: 84 VPMGMCGEVCYRGYNVMLGYYGEE--------NKIL------------ENDEWFPSGDFF 123
+P G GE+ G N+ GY+G+ N + ++ W +GD+
Sbjct: 413 LPDGQIGEIWLHGNNIGTGYWGKPEETAATFQNILKSRLSESHAEGAPDDALWVRTGDYG 472
Query: 124 ILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQT-----HPDVVEAQVYGVPDERLGE 178
+ +G + GR+KD++I G N P+++EY Q V A + VP +L +
Sbjct: 473 VYF-DGELYITGRVKDLVIIDGRNHYPQDLEYTAQEATKALRTGYVAA--FSVPANQLPQ 529
Query: 179 VVVAN 183
VV +
Sbjct: 530 VVFDD 534
>gnl|CDD|235624 PRK05850, PRK05850, acyl-CoA synthetase; Validated.
Length = 578
Score = 48.0 bits (115), Expect = 9e-07
Identities = 43/133 (32%), Positives = 60/133 (45%), Gaps = 22/133 (16%)
Query: 73 IVKVVDKKGNI-VPMGMCGEVCYRGYNVMLGYYGEEN--------KILENDE------WF 117
V++VD I P G GE+ G NV GY+ + +++ W
Sbjct: 380 TVRIVDPDTCIECPAGTVGEIWVHGDNVAAGYWQKPEETERTFGATLVDPSPGTPEGPWL 439
Query: 118 PSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQ--THPDVVEAQVYGVPDER 175
+GD + E G +VGRIKD++I G N P +IE +Q T V VPD+
Sbjct: 440 RTGDLGFISE-GELFIVGRIKDLLIVDGRNHYPDDIEATIQEITGGRVA---AISVPDDG 495
Query: 176 LGEVVVANIELKP 188
E +VA IELK
Sbjct: 496 -TEKLVAIIELKK 507
>gnl|CDD|178049 PLN02430, PLN02430, long-chain-fatty-acid-CoA ligase.
Length = 660
Score = 47.9 bits (114), Expect = 1e-06
Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Query: 85 PMGM--CGEVCYRGYNVMLGYYGEENKILE--NDEWFPSGDFFILHENGYGQVVGRIKDI 140
P+G GE+C RG + GYY E D WF +GD + NG +++ R K++
Sbjct: 459 PLGEPPRGEICVRGKCLFSGYYKNPELTEEVMKDGWFHTGDIGEILPNGVLKIIDRKKNL 518
Query: 141 I-IRGGENIIPKEIEYVLQTHPDVVEAQVYG 170
I + GE + + +E V +P V + VYG
Sbjct: 519 IKLSQGEYVALEYLENVYGQNPIVEDIWVYG 549
>gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS), including Saframycin A gene
cluster from Streptomyces lavendulae. The adenylation
(A) domain of NRPS recognizes a specific amino acid or
hydroxy acid and activates it as an (amino) acyl
adenylate by hydrolysis of ATP. The activated acyl
moiety then forms a thioester to the enzyme-bound
cofactor phosphopantetheine of a peptidyl carrier
protein domain. NRPSs are large multifunctional enzymes
which synthesize many therapeutically useful peptides in
bacteria and fungi via a template-directed, nucleic acid
independent nonribosomal mechanism. These natural
products include antibiotics, immunosuppressants, plant
and animal toxins, and enzyme inhibitors. NRPS has a
distinct modular structure in which each module is
responsible for the recognition, activation, and in some
cases, modification of a single amino acid residue of
the final peptide product. The modules can be subdivided
into domains that catalyze specific biochemical
reactions. This family includes the saframycin A gene
cluster from Streptomyces lavendulae which implicates
the NRPS system for assembling the unusual tetrapeptidyl
skeleton in an iterative manner. It also includes
saframycin Mx1 produced by Myxococcus xanthus NRPS.
Length = 449
Score = 46.1 bits (110), Expect = 4e-06
Identities = 42/145 (28%), Positives = 62/145 (42%), Gaps = 17/145 (11%)
Query: 74 VKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYG-----EENKILENDEWFPS------GDF 122
V+D VP+G+ GE+ G V GY G E + P GD
Sbjct: 279 AYVLDAHLQPVPVGVPGELYIGGAGVARGYLGRPELTAERFLPNPFAGSPGERLYRTGD- 337
Query: 123 FILHENGYGQVV--GRIKD-IIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEV 179
++ GQ+ GRI D + +RG I EIE L++ P V EA V + D
Sbjct: 338 -LVRRRADGQLEYLGRIDDQVKVRG-FRIELGEIEAALRSIPGVAEAVVVAIGDAAGDRQ 395
Query: 180 VVANIELKPGASLTQDDIKTYCKGK 204
+VA I PGA++ +D++ +
Sbjct: 396 LVAYIVADPGAAIDIEDLRARLATR 420
>gnl|CDD|215353 PLN02654, PLN02654, acetate-CoA ligase.
Length = 666
Score = 45.7 bits (108), Expect = 6e-06
Identities = 38/137 (27%), Positives = 62/137 (45%), Gaps = 12/137 (8%)
Query: 67 FGIKHLIVKVVDKKGNIVPMGMCGEVCYRGY--NVMLGYYGEENKILENDEWFP------ 118
FG++ +IV D+KG + G +C + YG+ + E + P
Sbjct: 461 FGVQPVIV---DEKGKEIEGECSGYLCVKKSWPGAFRTLYGDHER-YETTYFKPFAGYYF 516
Query: 119 SGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGE 178
SGD ++GY + GR+ D+I G I E+E L +HP EA V G+ E G+
Sbjct: 517 SGDGCSRDKDGYYWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGIEHEVKGQ 576
Query: 179 VVVANIELKPGASLTQD 195
+ A + L G +++
Sbjct: 577 GIYAFVTLVEGVPYSEE 593
>gnl|CDD|215217 PLN02387, PLN02387, long-chain-fatty-acid-CoA ligase family
protein.
Length = 696
Score = 45.1 bits (107), Expect = 1e-05
Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 8/91 (8%)
Query: 90 GEVCYRGYNVMLGYYGEENKILEN---DE----WFPSGDFFILHENGYGQVVGRIKDII- 141
GE+ G +V LGY+ + K E DE WF +GD H +G +++ R KDI+
Sbjct: 503 GEIVIGGPSVTLGYFKNQEKTDEVYKVDERGMRWFYTGDIGQFHPDGCLEIIDRKKDIVK 562
Query: 142 IRGGENIIPKEIEYVLQTHPDVVEAQVYGVP 172
++ GE + ++E L P V V+ P
Sbjct: 563 LQHGEYVSLGKVEAALSVSPYVDNIMVHADP 593
>gnl|CDD|236231 PRK08308, PRK08308, acyl-CoA synthetase; Validated.
Length = 414
Score = 44.6 bits (106), Expect = 1e-05
Identities = 27/77 (35%), Positives = 36/77 (46%)
Query: 106 EENKILENDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVE 165
EE + D+ + D E G +GR+ D+I G N+ P E+E V+ P V E
Sbjct: 282 EEIVVKMGDKEIFTKDLGYKSERGTLHFMGRMDDVINVSGLNVYPIEVEDVMLRLPGVQE 341
Query: 166 AQVYGVPDERLGEVVVA 182
A VY D GE V A
Sbjct: 342 AVVYRGKDPVAGERVKA 358
>gnl|CDD|213278 cd05910, FACL_like_1, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 455
Score = 44.7 bits (106), Expect = 1e-05
Identities = 27/113 (23%), Positives = 42/113 (37%), Gaps = 7/113 (6%)
Query: 83 IVPMGMCGEVCYRGYNVMLGYYG-----EENKILENDE-WFPSGDFFILHENGYGQVVGR 136
+P G GE+ G +V YY + KI + + W GD + G GR
Sbjct: 292 ELPPGEVGEIIVSGPHVTREYYNRPEATKLAKISDGNRIWHRMGDLGYFDDQGRLWFCGR 351
Query: 137 IKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPG 189
+ G + +E V HP V + + GV + + V +E P
Sbjct: 352 KAHRVETAGGTLFTVPVEQVFNRHPGVRRSALVGV-GKPGTQAPVLVVEPMPP 403
>gnl|CDD|178452 PLN02861, PLN02861, long-chain-fatty-acid-CoA ligase.
Length = 660
Score = 43.7 bits (103), Expect = 3e-05
Identities = 35/120 (29%), Positives = 54/120 (45%), Gaps = 7/120 (5%)
Query: 90 GEVCYRGYNVMLGYYGEENKILE--NDEWFPSGDFFILHENGYGQVVGRIKDII-IRGGE 146
GE+C RG + GY+ ++ E D WF +GD NG +++ R K+I + GE
Sbjct: 466 GEICLRGNTLFSGYHKRQDLTEEVLIDGWFHTGDIGEWQPNGAMKIIDRKKNIFKLSQGE 525
Query: 147 NIIPKEIEYVLQTHPDVVEAQVYGVPDER-LGEVVVAN---IELKPGASLTQDDIKTYCK 202
+ + +E P + VYG E L VVV + +E + D K+ CK
Sbjct: 526 YVAVENLENTYSRCPLIASIWVYGNSFESFLVAVVVPDRQALEDWAANNNKTGDFKSLCK 585
>gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain. This
model represents a domain responsible for the specific
recognition of amino acids and activation as adenylyl
amino acids. The reaction catalyzed is aa + ATP ->
aa-AMP + PPi. These domains are usually found as
components of multi-domain non-ribosomal peptide
synthetases and are usually called "A-domains" in that
context (for a review, see ). A-domains are almost
invariably followed by "T-domains" (thiolation domains,
pfam00550) to which the amino acid adenylate is
transferred as a thiol-ester to a bound pantetheine
cofactor with the release of AMP (these are also called
peptide carrier proteins, or PCPs. When the A-domain
does not represent the first module (corresponding to
the first amino acid in the product molecule) it is
usually preceded by a "C-domain" (condensation domain,
pfam00668) which catalyzes the ligation of two amino
acid thiol-esters from neighboring modules. This domain
is a subset of the AMP-binding domain found in Pfam
(pfam00501) which also hits substrate--CoA ligases and
luciferases. Sequences scoring in between trusted and
noise for this model may be ambiguous as to whether they
activate amino acids or other molecules lacking an alpha
amino group.
Length = 409
Score = 43.0 bits (102), Expect = 4e-05
Identities = 48/216 (22%), Positives = 72/216 (33%), Gaps = 61/216 (28%)
Query: 3 SRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNK 62
+ I + TVL TP++ L +P L+S + + G +P L ++
Sbjct: 205 AALIAEHPVTVLNLTPSLL-------ALLAAALP---PALASLRLVILGGEALTPALVDR 254
Query: 63 IRDTFGIKHLI--------------------------------------VKVVDKKGNIV 84
R LI + V+D V
Sbjct: 255 WRARGPGARLINLYGPTETTVWSTATLVDPDDAPRESPVPIGRPLANTRLYVLDDDLRPV 314
Query: 85 PMGMCGEVCYRGYNVMLGYYGEE----NKILENDEWFP-------SGDFFILHENGYGQV 133
P+G+ GE+ G V GY + + + +GD +G +
Sbjct: 315 PVGVVGELYIGGPGVARGYLNRPELTAERFVPDPFAGGDGARLYRTGDLVRYLPDGNLEF 374
Query: 134 VGRIKDII-IRGGENIIPKEIEYVLQTHPDVVEAQV 168
+GRI D + IR G I EIE L HP V EA V
Sbjct: 375 LGRIDDQVKIR-GYRIELGEIEAALLRHPGVREAVV 409
>gnl|CDD|171527 PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional.
Length = 612
Score = 42.4 bits (100), Expect = 7e-05
Identities = 39/142 (27%), Positives = 59/142 (41%), Gaps = 26/142 (18%)
Query: 74 VKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYG--EENKIL-------------------E 112
V V G +P G GE+ G N+ GY+G EE + +
Sbjct: 414 VIVDPDTGAELPDGEVGEIWLHGDNIGRGYWGRPEETERTFGAKLQSRLAEGSHADGAAD 473
Query: 113 NDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIE-YVLQTHPDVVEAQV--Y 169
+ W +GD + + +G + GRI D+I+ G N P++IE V + P V V +
Sbjct: 474 DGTWLRTGDLGV-YLDGELYITGRIADLIVIDGRNHYPQDIEATVAEASPMVRRGYVTAF 532
Query: 170 GVPDERLGEVVVANIELKPGAS 191
VP E +V+ E G S
Sbjct: 533 TVPAEDNERLVIV-AERAAGTS 553
>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional.
Length = 5163
Score = 42.6 bits (100), Expect = 7e-05
Identities = 34/123 (27%), Positives = 52/123 (42%), Gaps = 9/123 (7%)
Query: 69 IKHLIVKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGE---------ENKILENDEWFPS 119
I +L ++D VP+G+ GE+ G + GY+G + + + + +
Sbjct: 831 IANLACYILDANLEPVPVGVLGELYLAGRGLARGYHGRPGLTAERFVPSPFVAGERMYRT 890
Query: 120 GDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEV 179
GD +G + GRI + G I EIE L HP V EA V V ++L
Sbjct: 891 GDLARYRADGVIEYAGRIDHQVKLRGLRIELGEIEARLLEHPWVREAAVLAVDGKQLVGY 950
Query: 180 VVA 182
VV
Sbjct: 951 VVL 953
Score = 40.7 bits (95), Expect = 3e-04
Identities = 36/139 (25%), Positives = 56/139 (40%), Gaps = 13/139 (9%)
Query: 76 VVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILE----------NDEWFPSGDFFIL 125
++D N++ GM GE+ G + GY E + + +GD
Sbjct: 2332 ILDADLNLLAPGMAGELYLGGEGLARGYLNRPGLTAERFVPDPFSASGERLYRTGDLARY 2391
Query: 126 HENGYGQVVGRI-KDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANI 184
+G + +GRI + IRG I EIE LQ HP V EA V D G+ +VA +
Sbjct: 2392 RADGVVEYLGRIDHQVKIRGFR-IELGEIEARLQAHPAVREAVVVAQ-DGASGKQLVAYV 2449
Query: 185 ELKPGASLTQDDIKTYCKG 203
A +++ +
Sbjct: 2450 VPDDAAEDLLAELRAWLAA 2468
Score = 39.2 bits (91), Expect = 0.001
Identities = 30/115 (26%), Positives = 47/115 (40%), Gaps = 9/115 (7%)
Query: 76 VVDKKGNIVPMGMCGEVCYRGYNVMLGYYGE---------ENKILENDEWFPSGDFFILH 126
++D VP+G GE+ G + GY+ + + + + +GD
Sbjct: 3376 ILDGSLEPVPVGALGELYLGGEGLARGYHNRPGLTAERFVPDPFVPGERLYRTGDLARYR 3435
Query: 127 ENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVV 181
+G + +GR+ + G I EIE L HP V EA V V +L VV
Sbjct: 3436 ADGVIEYIGRVDHQVKIRGFRIELGEIEARLLEHPWVREAVVLAVDGRQLVAYVV 3490
Score = 34.5 bits (79), Expect = 0.037
Identities = 33/110 (30%), Positives = 47/110 (42%), Gaps = 16/110 (14%)
Query: 76 VVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILENDEWFP------------SGDFF 123
V+D + N +P+G+ GE+ G V GY E L + + P +GD
Sbjct: 4880 VLDGQLNPLPVGVAGELYLGGEGVARGYL--ERPALTAERFVPDPFGAPGGRLYRTGDLA 4937
Query: 124 ILHENGYGQVVGRIK-DIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVP 172
+G +GR+ + IRG I EIE L+ HP V EA V
Sbjct: 4938 RYRADGVIDYLGRVDHQVKIRGFR-IELGEIEARLREHPAVREAVVIAQE 4986
>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated.
Length = 4334
Score = 40.9 bits (96), Expect = 2e-04
Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 8/98 (8%)
Query: 74 VKVVD-KKGNIVPMGMCGEVCYRGYNVMLGYY----GEENKILEND--EWFPSGDFFILH 126
V +VD + ++ GE+ G ++ GY+ +E+D W +GD L
Sbjct: 381 VLIVDPQSLEVLGDNRVGEIWASGPSIAHGYWRNPEASAKTFVEHDGRTWLRTGDLGFLR 440
Query: 127 ENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVV 164
+ G V GR+KD++I G N+ P++IE ++ +VV
Sbjct: 441 D-GELFVTGRLKDMLIVRGHNLYPQDIEKTVEREVEVV 477
Score = 37.8 bits (88), Expect = 0.003
Identities = 34/118 (28%), Positives = 52/118 (44%), Gaps = 13/118 (11%)
Query: 76 VVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILE----------NDEWFPSGDFFIL 125
++D+ +VP+G GE+C G V GY G+ + + + +GD
Sbjct: 4053 LLDEALELVPLGAVGELCVAGTGVGRGYVGDPLRTALAFVPHPFGAPGERLYRTGDLARR 4112
Query: 126 HENGYGQVVGRIK-DIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVA 182
+G + VGRI + IR G I EIE L +V EA V V + G+ +V
Sbjct: 4113 RSDGVLEYVGRIDHQVKIR-GYRIELGEIEARLHEQAEVREAAV-AVQEGVNGKHLVG 4168
Score = 36.3 bits (84), Expect = 0.009
Identities = 33/142 (23%), Positives = 60/142 (42%), Gaps = 21/142 (14%)
Query: 73 IVKVVDKKGNIVPMGMCGEVCYRGYNVMLGY---------------YGEENKILENDEWF 117
+ +V+D + N++P G+ GE+C G + GY GE+ L +
Sbjct: 1453 LCRVLDAELNLLPPGVAGELCIGGAGLARGYLGRPALTAERFVPDPLGEDGARL-----Y 1507
Query: 118 PSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLG 177
+GD + +G + +GR+ + G + P+EI+ L P V +A V V + G
Sbjct: 1508 RTGDRARWNADGALEYLGRLDQQVKLRGFRVEPEEIQARLLAQPGVAQAAVL-VREGAAG 1566
Query: 178 EVVVANIELKPGASLTQDDIKT 199
+V + G + +K
Sbjct: 1567 AQLVGYYTGEAGQEAEAERLKA 1588
Score = 35.5 bits (82), Expect = 0.019
Identities = 32/97 (32%), Positives = 42/97 (43%), Gaps = 12/97 (12%)
Query: 83 IVPMGMCGEVCYRGYNVMLGYYGEENKILEN---DEW-------FPSGDFFILHENGYGQ 132
+VP G GE+ G + GY+ E D + + +GD L +G +
Sbjct: 2526 LVPQGATGELYVGGAGLAQGYHDRPGLTAERFVADPFAADGGRLYRTGDLVRLRADGLVE 2585
Query: 133 VVGRI-KDIIIRGGENIIPKEIEYVLQTHPDVVEAQV 168
VGRI + IRG I EIE L HP V EA V
Sbjct: 2586 YVGRIDHQVKIRGFR-IELGEIESRLLEHPAVREAVV 2621
>gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of
siderophore-synthesizing nonribosomal peptide
synthetases (NRPS). The adenylation (A) domain of NRPS
recognizes a specific amino acid or hydroxy acid and
activates it as an (amino) acyl adenylate by hydrolysis
of ATP. The activated acyl moiety then forms a thioester
to the enzyme-bound cofactor phosphopantetheine of a
peptidyl carrier protein domain. This family of
siderophore-synthesizing NRPS includes the third
adenylation domain of SidN from the endophytic fungus
Neotyphodium lolii, ferrichrome siderophore synthetase,
HC-toxin synthetase, and enniatin synthase. NRPSs are
large multifunctional enzymes which synthesize many
therapeutically useful peptides. These natural products
include antibiotics, immunosuppressants, plant and
animal toxins, and enzyme inhibitors. NRPS has a
distinct modular structure in which each module is
responsible for the recognition, activation, and in some
cases, modification of a single amino acid residue of
the final peptide product. The modules can be subdivided
into domains that catalyze specific biochemical
reactions.
Length = 447
Score = 39.9 bits (94), Expect = 5e-04
Identities = 39/126 (30%), Positives = 55/126 (43%), Gaps = 25/126 (19%)
Query: 76 VVDKKG-NIVPMGMCGEVCYRGYNVMLGYYGE----ENKILENDEWFP--------SGDF 122
V+D +VP+G GE+C G V GY K + + W +GD
Sbjct: 271 VLDPDLEPLVPIGAVGELCIGGPGVARGYLNRPELTAEKFIPDPFWLNNPGGRIYRTGDL 330
Query: 123 FILHENGYGQVVGRIKDII-IRG-----GENIIPKEIEYVLQTHPDVVEAQVYGVPDERL 176
E+G + +GR D + IRG GE IE VL+ P VV A V + D+
Sbjct: 331 VRYLEDGSLEFLGRKDDQVKIRGQRIELGE------IEAVLRALPGVVVAAVVLLLDDPG 384
Query: 177 GEVVVA 182
G+ +VA
Sbjct: 385 GKQLVA 390
>gnl|CDD|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional.
Length = 700
Score = 39.6 bits (93), Expect = 6e-04
Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
Query: 90 GEVCYRGYNVMLGYYGEE---NKILENDEWFPSGDFFILHENGYGQVVGRIK 138
GE+ RG + GYY +E ++L+ D WF +GD + NG +++GR+K
Sbjct: 508 GEILLRGPFLFKGYYKQEELTREVLDEDGWFHTGDVGSIAANGTLRIIGRVK 559
>gnl|CDD|240325 PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisional.
Length = 647
Score = 39.3 bits (92), Expect = 8e-04
Identities = 25/82 (30%), Positives = 35/82 (42%)
Query: 116 WFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDER 175
++ SGD ENGY +V R D I G + IE + HP V+E G+ D
Sbjct: 493 YYNSGDLGFKDENGYYTIVSRSDDQIKISGNKVQLNTIETSILKHPLVLECCSIGIYDPD 552
Query: 176 LGEVVVANIELKPGASLTQDDI 197
V + + LK S D+
Sbjct: 553 CYNVPIGLLVLKQDQSNQSIDL 574
>gnl|CDD|181207 PRK08043, PRK08043, bifunctional acyl-[acyl carrier protein]
synthetase/2-acylglycerophosphoethanolamine
acyltransferase; Validated.
Length = 718
Score = 39.3 bits (92), Expect = 8e-04
Identities = 29/100 (29%), Positives = 41/100 (41%), Gaps = 14/100 (14%)
Query: 95 RGYNVMLGYYGEENK-ILE-----NDE------WFPSGDFFILHENGYGQVVGRIKDIII 142
+G N+M GY E +LE N W+ +GD E G+ Q+ GR K
Sbjct: 559 KGPNIMNGYLRVEKPGVLEVPTAENARGEMERGWYDTGDIVRFDEQGFVQIQGRAKRFAK 618
Query: 143 RGGENIIPKEIEYV-LQTHPDVVEAQVYGVPDERLGEVVV 181
GE + + +E + L PD A D GE +V
Sbjct: 619 IAGEMVSLEMVEQLALGVSPDKQHATA-IKSDASKGEALV 657
>gnl|CDD|236668 PRK10252, entF, enterobactin synthase subunit F; Provisional.
Length = 1296
Score = 38.1 bits (89), Expect = 0.003
Identities = 31/141 (21%), Positives = 56/141 (39%), Gaps = 17/141 (12%)
Query: 76 VVDKKGNIVPMGMCGEVCYRGYNVMLGYYGE---------ENKILENDEWFPSGDFFILH 126
++D + VP G+ G++ G + GY G + + + +GD
Sbjct: 789 ILDARMRPVPPGVAGDLYLTGIQLAQGYLGRPDLTASRFIADPFAPGERMYRTGDVARWL 848
Query: 127 ENGYGQVVGRIKDII-IRGGENIIPKEIEYVLQTHPDV----VEAQVYGVPDERLGEV-- 179
++G + +GR D + IRG + I EI+ +Q PDV A V G+
Sbjct: 849 DDGAVEYLGRSDDQLKIRG-QRIELGEIDRAMQALPDVEQAVTHACVINQAAATGGDARQ 907
Query: 180 VVANIELKPGASLTQDDIKTY 200
+V + + G L ++
Sbjct: 908 LVGYLVSQSGLPLDTSALQAQ 928
>gnl|CDD|224458 COG1541, PaaK, Coenzyme F390 synthetase [Coenzyme metabolism].
Length = 438
Score = 37.7 bits (88), Expect = 0.003
Identities = 52/231 (22%), Positives = 83/231 (35%), Gaps = 56/231 (24%)
Query: 10 KCTVLYGTPTMYVDLISSIQPLTEEMPN--IAEELSSPVIALTAGAPCSPTLFNKIRDTF 67
K TV+ TP S + L EE I + S + P S + I + F
Sbjct: 182 KPTVIAATP-------SYLLYLAEEAEEEGIDPDKLSLKKGIFGAEPWSEEMRKVIENRF 234
Query: 68 GIK-----------------------------HLIVKVVDKK-GNIVPMGMCGEVCY--- 94
G K H I ++VD + G +P G GE+
Sbjct: 235 GCKAFDIYGLTEGFGPGAGECTERNGLHIWEDHFIFEIVDPETGEQLPDGERGELVITTL 294
Query: 95 -RGYNVMLGYY-GEENKILENDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKE 152
+ ++ Y G+ IL + G E + GR D++I G N+ P +
Sbjct: 295 TKEGMPLIRYRTGDITVILSDPC--GCGRTHRRIER----IEGRSDDMLIVRGVNVFPSQ 348
Query: 153 IEYVLQTHPDV---VEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTY 200
IE VL P+V + + + L E+ V +EL+ A +D+ +
Sbjct: 349 IERVLLQIPEVTPHYQIILTR--NGGLDELTVR-VELENEAEELEDERRLA 396
>gnl|CDD|166255 PLN02614, PLN02614, long-chain acyl-CoA synthetase.
Length = 666
Score = 37.3 bits (86), Expect = 0.004
Identities = 27/84 (32%), Positives = 39/84 (46%), Gaps = 3/84 (3%)
Query: 90 GEVCYRGYNVMLGYYGEENKILEN--DEWFPSGDFFILHENGYGQVVGRIKDII-IRGGE 146
GE+C RG + GYY E+ E D W +GD NG +++ R K+I + GE
Sbjct: 469 GEICIRGKTLFSGYYKREDLTKEVLIDGWLHTGDVGEWQPNGSMKIIDRKKNIFKLSQGE 528
Query: 147 NIIPKEIEYVLQTHPDVVEAQVYG 170
+ + IE + V VYG
Sbjct: 529 YVAVENIENIYGEVQAVDSVWVYG 552
>gnl|CDD|213305 cd05939, hsFATP4_like, Fatty acid transport proteins (FATP),
including FATP4 and FATP1, and similar proteins. Fatty
acid transport protein (FATP) transports long-chain or
very-long-chain fatty acids across the plasma membrane.
At least five copies of FATPs are identified in
mammalian cells. This family includes FATP4, FATP1, and
homologous proteins. Each FATP has unique patterns of
tissue distribution. FATP4 is mainly expressed in the
brain, testis, colon and kidney. FATPs also have fatty
acid CoA synthetase activity, thus playing dual roles as
fatty acid transporters and its activation enzymes.
FATPs are the key players in the trafficking of
exogenous fatty acids into the cell and in intracellular
fatty acid homeostasis.
Length = 474
Score = 37.0 bits (86), Expect = 0.004
Identities = 25/79 (31%), Positives = 33/79 (41%), Gaps = 8/79 (10%)
Query: 101 LGYYGE---ENKILEN-----DEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKE 152
GY E KI + D F SGD ++ E GY R D GEN+ E
Sbjct: 327 DGYVNEGATNKKIARDVFKKGDSAFLSGDVLVMDELGYLYFKDRTGDTFRWKGENVSTTE 386
Query: 153 IEYVLQTHPDVVEAQVYGV 171
+E +L + + VYGV
Sbjct: 387 VEGILSNVLGLEDVVVYGV 405
>gnl|CDD|180533 PRK06334, PRK06334, long chain fatty acid--[acyl-carrier-protein]
ligase; Validated.
Length = 539
Score = 36.3 bits (84), Expect = 0.009
Identities = 36/145 (24%), Positives = 60/145 (41%), Gaps = 19/145 (13%)
Query: 44 SPVIALTAGAPCSPTLFNKIRDTFG--IKHLIVKVVDKKGNI-VPMGMCGEVCYRGYNVM 100
SPVI + SP K G I+ + V +V ++ + V G G V RG ++
Sbjct: 338 SPVITINTVN--SP----KHESCVGMPIRGMDVLIVSEETKVPVSSGETGLVLTRGTSLF 391
Query: 101 LGYYGEENKI----LENDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYV 156
GY GE+ L + W+ +GD + +G + GR+ + G E + + +E +
Sbjct: 392 SGYLGEDFGQGFVELGGETWYVTGDLGYVDRHGELFLKGRLSRFVKIGAEMVSLEALESI 451
Query: 157 LQTH------PDVVEAQVYGVPDER 175
L V G+P E+
Sbjct: 452 LMEGFGQNAADHAGPLVVCGLPGEK 476
>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional.
Length = 3956
Score = 34.4 bits (79), Expect = 0.045
Identities = 35/126 (27%), Positives = 51/126 (40%), Gaps = 19/126 (15%)
Query: 76 VVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILENDEWFP------------SGDFF 123
V+D + N VP+G+ GE+ G + GY+ + L + + +GD
Sbjct: 3422 VLDGQLNPVPVGVAGELYIGGVGLARGYHQRPS--LTAERFVADPFSGSGGRLYRTGDLA 3479
Query: 124 ILHENGYGQVVGRIK-DIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDE---RLGEV 179
+G + +GRI + IRG I EIE L HP V EA V +L
Sbjct: 3480 RYRADGVIEYLGRIDHQVKIRGFR-IELGEIEARLLQHPSVREAVVLARDGAGGKQLVAY 3538
Query: 180 VVANIE 185
VV
Sbjct: 3539 VVPADP 3544
Score = 32.1 bits (73), Expect = 0.20
Identities = 33/118 (27%), Positives = 48/118 (40%), Gaps = 13/118 (11%)
Query: 76 VVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILE----------NDEWFPSGDFFIL 125
++D N VP+G+ GE+ G + GY E + +GD
Sbjct: 1905 ILDASLNPVPIGVAGELYLGGVGLARGYLNRPALTAERFVADPFGTVGSRLYRTGDLARY 1964
Query: 126 HENGYGQVVGRIK-DIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVA 182
+G + +GRI + IRG I EIE L+ V EA V D G+ +VA
Sbjct: 1965 RADGVIEYLGRIDHQVKIRGFR-IELGEIEARLREQGGVREAVVIAQ-DGANGKQLVA 2020
Score = 30.1 bits (68), Expect = 1.0
Identities = 32/119 (26%), Positives = 50/119 (42%), Gaps = 16/119 (13%)
Query: 69 IKHLIVKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILENDEWFPS--------- 119
+ +L + ++D N VP+G+ GE+ G + GY+ L + + P
Sbjct: 834 LANLGLYILDHYLNPVPVGVVGELYIGGAGLARGYHRRPA--LTAERFVPDPFGADGGRL 891
Query: 120 ---GDFFILHENGYGQVVGRIKD-IIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDE 174
GD +G + +GR+ + IRG I EIE L P V EA V P +
Sbjct: 892 YRTGDLARYRADGVIEYLGRMDHQVKIRG-FRIELGEIEARLLAQPGVREAVVLAQPGD 949
>gnl|CDD|235313 PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase subunit
1; Provisional.
Length = 503
Score = 33.7 bits (78), Expect = 0.057
Identities = 34/123 (27%), Positives = 52/123 (42%), Gaps = 11/123 (8%)
Query: 75 KVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEENK-----ILENDEW-FPSGDFFILHEN 128
++D++G +P G GE+ G +V GY K + + + +GD L E+
Sbjct: 330 LIIDEEGTKLPDGEQGEIVISGPSVSKGYLNNPEKTAEAFFTFDGQPAYHTGDAGYL-ED 388
Query: 129 GYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVV--VANIEL 186
G GRI I G I +EIE L+ V A V VP + +V +A +
Sbjct: 389 GLLFYQGRIDFQIKLNGYRIELEEIEQNLRQSSYVESAVV--VPYNKDHKVQYLIAYVVP 446
Query: 187 KPG 189
K
Sbjct: 447 KEE 449
>gnl|CDD|233316 TIGR01217, ac_ac_CoA_syn, acetoacetyl-CoA synthase. This enzyme
catalyzes the first step of the mevalonate pathway of
IPP biosynthesis. Most bacteria do not use this pathway,
but rather the deoxyxylulose pathway [Central
intermediary metabolism, Other].
Length = 652
Score = 33.7 bits (77), Expect = 0.058
Identities = 32/136 (23%), Positives = 52/136 (38%), Gaps = 10/136 (7%)
Query: 72 LIVKVVDKKGNIVPMGMCGE-VCYRGYNVM-LGYYGEENKILENDEWFPS-------GDF 122
V+ D +G V G GE VC M + ++ + + D +F + GD+
Sbjct: 448 TAVQSWDPEGKPV-TGEVGELVCTNPMPSMPIRFWNDPDGSKYRDAYFDTYPGVWRHGDW 506
Query: 123 FILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVA 182
L G + GR + G + EI ++ +V E+ G G VV
Sbjct: 507 ITLTPRGGIVIHGRSDSTLNPQGVRMGSAEIYNAVERLDEVRESLCIGQEQPDGGYRVVL 566
Query: 183 NIELKPGASLTQDDIK 198
+ L PGA+L +
Sbjct: 567 FVHLAPGATLDDALLD 582
>gnl|CDD|236121 PRK07868, PRK07868, acyl-CoA synthetase; Validated.
Length = 994
Score = 33.5 bits (77), Expect = 0.075
Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 5/86 (5%)
Query: 114 DEWFPSGDFFILHENGYGQVVGRIKDII--IRGGENIIPKEIEYVLQTHPDVVEAQVYGV 171
D W + F ++G +V R +I RG P + L V A YGV
Sbjct: 835 DTWISTEYLFRRDDDGDYWLVDRRGSVIRTARGPVYTEP--VTDALGRIGGVDLAVTYGV 892
Query: 172 PDERLGEVVVANIELKPGASLTQDDI 197
+ ++ VA + L+PGA++T D+
Sbjct: 893 -EVGGRQLAVAAVTLRPGAAITAADL 917
>gnl|CDD|131425 TIGR02372, 4_coum_CoA_lig, 4-coumarate--CoA ligase, photoactive
yellow protein activation family. This model represents
the 4-coumarate--CoA ligase associated with biosynthesis
of the 4-hydroxy cinnamyl (also called 4-coumaroyl)
chromophore covalently linked to a Cys residue in
photoactive yellow protein of Rhodobacter spp. and
Ectothiorhodospira halophila. This enzyme is designated
6.2.1.12 and therefore joins a number of plant enzymes
linked to lignin biosynthesis and given similar names.
Length = 386
Score = 32.6 bits (74), Expect = 0.11
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 133 VVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVV 181
++GR +I+ GG N+ P + +L+ +P V A V + RL +V
Sbjct: 293 ILGRKDEILQVGGVNVSPGHVRDILERNPRVRAAAVR-LDGRRLKAFIV 340
>gnl|CDD|213308 cd05943, AACS, Acetoacetyl-CoA synthetase (acetoacetate-CoA ligase,
AACS). AACS is a cytosolic ligase that specifically
activates acetoacetate to its coenzyme A ester by a
two-step reaction. Acetoacetate first reacts with ATP to
form an acyl-adenylate intermediate, which then reacts
with CoA to produce an acyl-CoA ester. This is the first
step of the mevalonate pathway of isoprenoid
biosynthesis via isopentenyl diphosphate. Isoprenoids
are a large class of compounds found in all living
organisms. AACS is widely distributed in bacteria,
archaea and eukaryotes. In bacteria, AACS is known to
exhibit an important role in the metabolism of
poly-b-hydroxybutyrate, an intracellular reserve of
organic carbon and chemical energy by some
microorganisms. In mammals, AACS influences the rate of
ketone body utilization for the formation of
physiologically important fatty acids and cholesterol.
Length = 616
Score = 31.4 bits (72), Expect = 0.33
Identities = 33/131 (25%), Positives = 60/131 (45%), Gaps = 10/131 (7%)
Query: 74 VKVVDKKGNIVPMGMCGE-VCYRGYNVM-LGYYGEENKILENDEWF---PS----GDFFI 124
V+ D++G V +G GE VC + + M L ++ + + D +F P GD+
Sbjct: 422 VEAFDEEGKPV-IGEVGELVCTKPFPSMPLYFWNDPDGSRYRDAYFDTFPGVWRHGDWIK 480
Query: 125 LHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANI 184
+ +G + GR + GG I EI V++ P+V ++ V G + E + +
Sbjct: 481 ITPHGGVIIYGRSDATLNPGGVRIGTAEIYRVVEKIPEVEDSLVVGQEVDDGDERMPLFV 540
Query: 185 ELKPGASLTQD 195
+L+ G +L
Sbjct: 541 KLREGVTLDDA 551
>gnl|CDD|233551 TIGR01734, D-ala-DACP-lig, D-alanine--poly(phosphoribitol) ligase,
subunit 1. This model represents the enzyme (also
called D-alanine-D-alanyl carrier protein ligase) which
activates D-alanine as an adenylate via the reaction
D-ala + ATP -> D-ala-AMP + PPi, and further catalyzes
the condensation of the amino acid adenylate with the
D-alanyl carrier protein (D-ala-ACP). The D-alanine is
then further transferred to teichoic acid in the
biosynthesis of lipoteichoic acid (LTA) and wall
teichoic acid (WTA) in gram positive bacteria, both
polysacchatides [Cell envelope, Biosynthesis and
degradation of murein sacculus and peptidoglycan].
Length = 502
Score = 30.9 bits (70), Expect = 0.51
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 74 VKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEENK 109
+ ++D++G +P G GE+ G +V GY K
Sbjct: 327 LFIMDEEGEPLPEGEKGEIVIVGPSVSKGYLNNPEK 362
>gnl|CDD|212159 cd11614, SAF_CpaB_FlgA_like, SAF domains of the flagella basal body
P-ring formation protein FlgA and the flp pilus assembly
CpaB. FlgA is a putative periplasmic chaperone that
assists in the formation of the flagellar P ring; CpaB
is a protein invoved in the assembly of the flp pili,
which are bacterial virulence factors mediating
non-specific adherence to surfaces; these proteins
appear to contain a single SAF domain. This intermediate
family also contains the SAF domains of sialic acid
synthetases and type III antifreeze proteins, which also
share the same extensive core structure.
Length = 61
Score = 28.2 bits (64), Expect = 0.56
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 178 EVVVANIELKPGASLTQDDIKT 199
VVVA +L G +T DD+
Sbjct: 1 PVVVAARDLPAGTVITADDLTL 22
>gnl|CDD|234138 TIGR03177, pilus_cpaB, Flp pilus assembly protein CpaB. Members of
this protein family are the CpaB protein of Flp-type
pilus assembly. Similar proteins include the FlgA
protein of bacterial flagellum biosynthesis.
Length = 261
Score = 30.3 bits (69), Expect = 0.61
Identities = 8/40 (20%), Positives = 14/40 (35%)
Query: 160 HPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKT 199
+ VVVA +L G +T +D++
Sbjct: 19 WLSPQQPVAAVAEKVPTVPVVVAARDLPAGTPITAEDLRW 58
>gnl|CDD|203875 pfam08206, OB_RNB, Ribonuclease B OB domain. This family includes
the N-terminal OB domain found in ribonuclease B
proteins in one or two copies.
Length = 58
Score = 27.5 bits (62), Expect = 1.0
Identities = 12/64 (18%), Positives = 24/64 (37%), Gaps = 10/64 (15%)
Query: 123 FILHENGYGQVV--GRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVV 180
H+ G+G ++ DI I P++++ + H D V ++ E
Sbjct: 3 VRGHKKGFGFLIPDDEEDDIFIP------PEQMKKAM--HGDRVLVRITKGDRRGRREGR 54
Query: 181 VANI 184
+ I
Sbjct: 55 IVRI 58
>gnl|CDD|131210 TIGR02155, PA_CoA_ligase, phenylacetate-CoA ligase.
Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the
first step in aromatic catabolism of phenylacetic acid
(PA) into phenylacetyl-CoA (PA-CoA). Often located in a
conserved gene cluster with enzymes involved in
phenylacetic acid activation (paaG/H/I/J),
phenylacetate-CoA ligase has been found among the
proteobacteria as well as in gram positive prokaryotes.
In the B-subclass proteobacterium Azoarcus evansii,
phenylacetate-CoA ligase has been shown to be induced
under aerobic and anaerobic growth conditions. It
remains unclear however, whether this induction is due
to the same enzyme or to another isoenzyme restricted to
specific anaerobic growth conditions [Energy metabolism,
Other].
Length = 422
Score = 29.4 bits (66), Expect = 1.3
Identities = 15/63 (23%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 132 QVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVV-EAQVYGVPDERLGEVVVANIELKPGA 190
++ GR D++I G N+ P ++E V+ ++ Q+ + + E+ + +ELKP +
Sbjct: 312 RITGRSDDMLIIRGVNVFPTQLEEVILKMDELSPHYQLELTRNGHMDELTL-KVELKPES 370
Query: 191 SLT 193
Sbjct: 371 YTL 373
>gnl|CDD|226052 COG3521, COG3521, Predicted component of the type VI protein
secretion system [Intracellular trafficking, secretion,
and vesicular transport].
Length = 159
Score = 28.5 bits (64), Expect = 1.4
Identities = 10/40 (25%), Positives = 18/40 (45%), Gaps = 5/40 (12%)
Query: 111 LENDEWFPSGDFFILHENGYGQVVG----RIKDIIIRGGE 146
L++D F S D+ L + +G + + I+ GE
Sbjct: 60 LKDDSKFLSADYDQLASD-LKSTLGGDLVDVDEYILLPGE 98
>gnl|CDD|221933 pfam13144, SAF_2, SAF-like. The members of this family are similar
to those in the SAF family, and include flagellar
basal-body proteins and pilus-assembly proteins.
Length = 196
Score = 28.7 bits (65), Expect = 1.5
Identities = 10/26 (38%), Positives = 12/26 (46%)
Query: 174 ERLGEVVVANIELKPGASLTQDDIKT 199
E G VVVA L G +T D+
Sbjct: 72 EVTGPVVVAARPLARGEVITASDLAL 97
>gnl|CDD|213288 cd05921, FCS, Feruloyl-CoA synthetase (FCS). Feruloyl-CoA
synthetase is an essential enzyme in the feruloyl acid
degradation pathway and enables some proteobacteria to
grow on media containing feruloyl acid as the sole
carbon source. It catalyzes the transfer of CoA to the
carboxyl group of ferulic acid, which then forms
feruloyl-CoA in the presence of ATP and Mg2. The
resulting feruloyl-CoA is further degraded to vanillin
and acetyl-CoA. Feruloyl-CoA synthetase (FCS) is a
subfamily of the adenylate-forming enzymes superfamily.
Length = 559
Score = 29.1 bits (66), Expect = 1.5
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Query: 84 VPMGMCGEVCYRGYNVMLGYYGEENKILEN-DE--WFPSGD 121
VP G EV +G NV GY+ + E DE ++ GD
Sbjct: 361 VPNGGKLEVRVKGPNVTPGYWRDPELTAEAFDEEGFYRIGD 401
>gnl|CDD|213281 cd05913, PaaK, Phenylacetate-CoA ligase (also known as PaaK). PaaK
catalyzes the first step in the aromatic degradation
pathway, by converting phenylacetic acid (PA) into
phenylacetyl-CoA (PA-CoA). Phenylacetate-CoA ligase has
been found in proteobacteria as well as gram positive
prokaryotes. The enzyme is specifically induced after
aerobic growth in a chemically defined medium containing
PA or phenylalanine (Phe) as the sole carbon source.
PaaKs are members of the adenylate-forming enzyme (AFE)
family. However, sequence comparison reveals divergent
features of PaaK with respect to the superfamily,
including a novel N-terminal sequence.
Length = 424
Score = 29.1 bits (65), Expect = 1.6
Identities = 18/73 (24%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
Query: 132 QVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLG--EVVVANIELKPG 189
++ GR D +I G N+ P +IE +L P++ + Y + ER+G + ++ +EL
Sbjct: 315 RITGRSDDXLIIRGVNVFPSQIEEILVKFPEL--SPHYQITLERVGHLDELIVEVELSDE 372
Query: 190 ASLTQDDIKTYCK 202
++ T + + +
Sbjct: 373 SADTYIEREKIRR 385
>gnl|CDD|232829 TIGR00112, proC, pyrroline-5-carboxylate reductase. This enzyme
catalyzes the final step in proline biosynthesis. Among
the four paralogs in Bacillus subtilis (proG, proH,
proI, and comER), ComER is the most divergent and does
not prevent proline auxotrophy from mutation of the
other three. It is excluded from the seed and scores
between the trusted and noise cutoffs [Amino acid
biosynthesis, Glutamate family].
Length = 245
Score = 28.0 bits (63), Expect = 3.3
Identities = 16/93 (17%), Positives = 35/93 (37%), Gaps = 4/93 (4%)
Query: 1 MISRHIVKEKC--TVLYGTPTMYV-DLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSP 57
+ K+K ++ G + L+ + + MPN ++ + V A+ A A S
Sbjct: 62 ELKSEKGKDKLLISIAAGVTLEKLSQLLGGTRRVVRVMPNTPAKVGAGVTAIAANANVSE 121
Query: 58 TLFNKIRDTFGIKHLIVKVVDKKGNIVPMGMCG 90
+ F +V++ + + V + G
Sbjct: 122 EDRALVLALFKAVGEVVELPEALMDAV-TALSG 153
>gnl|CDD|178440 PLN02848, PLN02848, adenylosuccinate lyase.
Length = 458
Score = 27.8 bits (62), Expect = 4.4
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 7/46 (15%)
Query: 17 TPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNK 62
PTM ++I +I L E + P+++ T G P SPT K
Sbjct: 147 LPTM-DEIIKAISSLAHEFAYV------PMLSRTHGQPASPTTLGK 185
>gnl|CDD|236175 PRK08180, PRK08180, feruloyl-CoA synthase; Reviewed.
Length = 614
Score = 27.9 bits (63), Expect = 4.7
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 84 VPMGMCGEVCYRGYNVMLGYYGEENKILEN-DE--WFPSGD 121
VP+G EV +G NV GY+ E DE ++ SGD
Sbjct: 406 VPVGGKLEVRVKGPNVTPGYWRAPELTAEAFDEEGYYRSGD 446
>gnl|CDD|180794 PRK07018, flgA, flagellar basal body P-ring biosynthesis protein
FlgA; Reviewed.
Length = 235
Score = 27.2 bits (61), Expect = 4.9
Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 5/34 (14%)
Query: 164 VEAQVYGVPDERLGEVVVANIELKPGASLTQDDI 197
V +V + G VVA L G L+ D+
Sbjct: 102 VPVRV-----QVTGPYVVAARPLARGEKLSASDV 130
>gnl|CDD|234298 TIGR03659, IsdE, heme ABC transporter, heme-binding protein isdE.
This family of ABC substrate-binding proteins is
observed primarily in close proximity with proteins
localized to the cell wall and bearing the NEAT (NEAr
Transporter, pfam05031) heme-binding domain. IsdE has
been shown to bind heme and is involved in the process
of scavenging heme for the purpose of obtaining iron.
Length = 289
Score = 27.6 bits (62), Expect = 5.0
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 15/64 (23%)
Query: 120 GDFFILHENGYGQVVGRIKDII-IRGGENI--------IPKEIEYVLQTHPDVVEAQVYG 170
G + + EN Y I D++ + GGEN+ + EY+L+ +PD++ +G
Sbjct: 178 GSYLVATENSY------IGDLVKLAGGENVYKGNKQEYLSSNTEYLLKANPDIILRAAHG 231
Query: 171 VPDE 174
+PDE
Sbjct: 232 MPDE 235
>gnl|CDD|237144 PRK12582, PRK12582, acyl-CoA synthetase; Provisional.
Length = 624
Score = 26.9 bits (60), Expect = 8.1
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 83 IVPMGMCGEVCYRGYNVMLGYYGEENK 109
+ P+G EV +G NV GY+ +
Sbjct: 417 LAPVGDKYEVRVKGPNVTPGYHKDPEL 443
>gnl|CDD|100018 cd02189, delta_tubulin, The tubulin superfamily includes five
distinct families, the alpha-, beta-, gamma-, delta-,
and epsilon-tubulins and a sixth family (zeta-tubulin)
which is present only in kinetoplastid protozoa. The
alpha- and beta-tubulins are the major components of
microtubules, while gamma-tubulin plays a major role in
the nucleation of microtubule assembly. The delta- and
epsilon-tubulins are widespread but unlike the alpha,
beta, and gamma-tubulins they are not ubiquitous among
eukaryotes. Delta-tubulin plays an essential role in
forming the triplet microtubules of centrioles and basal
bodies.
Length = 446
Score = 26.9 bits (60), Expect = 8.9
Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 7/40 (17%)
Query: 62 KIRDTFGIKHLIVKVVDKKGNIVPMGMCGEVCYRGYNVML 101
+RD + L+ VV P GEV + YN +L
Sbjct: 150 LLRDEYPESLLLNIVV------WPY-TTGEVIVQNYNTVL 182
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.141 0.420
Gapped
Lambda K H
0.267 0.0800 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,860,499
Number of extensions: 1071347
Number of successful extensions: 1498
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1338
Number of HSP's successfully gapped: 217
Length of query: 204
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 112
Effective length of database: 6,857,034
Effective search space: 767987808
Effective search space used: 767987808
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.6 bits)