RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13807
(204 letters)
>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica
[TaxId: 28901]}
Length = 643
Score = 152 bits (385), Expect = 7e-44
Identities = 44/250 (17%), Positives = 84/250 (33%), Gaps = 52/250 (20%)
Query: 2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFN 61
+ + + K + +LY PT L++ E + SS I + G P +P +
Sbjct: 338 MCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGT-----DRSSLRILGSVGEPINPEAWE 392
Query: 62 KIRDTFGIKHLI-------------------------------------VKVVDKKGNIV 84
G + +VD +G+
Sbjct: 393 WYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEGHPQ 452
Query: 85 PMGMCGEVCYRGY--NVMLGYYGEENKILEN-----DEWFPSGDFFILHENGYGQVVGRI 137
G + +G+ + + + SGD E+GY + GR+
Sbjct: 453 EGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRV 512
Query: 138 KDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQD-- 195
D++ G + EIE L HP + EA V G+P G+ + A + L G + +
Sbjct: 513 DDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELY 572
Query: 196 -DIKTYCKGK 204
+++ + + +
Sbjct: 573 AEVRNWVRKE 582
>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis)
[TaxId: 7054]}
Length = 541
Score = 136 bits (343), Expect = 2e-38
Identities = 44/135 (32%), Positives = 72/135 (53%), Gaps = 4/135 (2%)
Query: 74 VKVVDK-KGNIVPMGMCGEVCYRGYNVMLGYYGEE---NKILENDEWFPSGDFFILHENG 129
KVVD G + + GE+C RG +M GY N +++ D W SGD E+
Sbjct: 368 AKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDE 427
Query: 130 YGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPG 189
+ +V R+K +I G + P E+E +L HP++ +A V G+PD+ GE+ A + L+ G
Sbjct: 428 HFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHG 487
Query: 190 ASLTQDDIKTYCKGK 204
++T+ +I Y +
Sbjct: 488 KTMTEKEIVDYVASQ 502
>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168
{Thermus thermophilus [TaxId: 274]}
Length = 534
Score = 131 bits (329), Expect = 2e-36
Identities = 53/247 (21%), Positives = 90/247 (36%), Gaps = 54/247 (21%)
Query: 5 HIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNK-- 62
E T G PT+++ L + + + L + + G+ +L +
Sbjct: 255 LFDGEGVTFTAGVPTVWLALA-------DYLESTGHRLKTLRRLVVGGSAAPRSLIARFE 307
Query: 63 -----IRDTFG-----------------------------------IKHLIVKVVDKKGN 82
+R +G I + ++V D++G
Sbjct: 308 RMGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVADEEGR 367
Query: 83 IVPM--GMCGEVCYRGYNVMLGYYGEENKILE---NDEWFPSGDFFILHENGYGQVVGRI 137
VP GEV +G + GYYG E D +F +GD + E GY ++ R+
Sbjct: 368 PVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRL 427
Query: 138 KDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDI 197
KD+I GGE I ++E L HP V EA V +P + E +A + + ++
Sbjct: 428 KDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPRGEKPTPEELN 487
Query: 198 KTYCKGK 204
+ K
Sbjct: 488 EHLLKAG 494
>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 640
Score = 123 bits (310), Expect = 1e-33
Identities = 40/235 (17%), Positives = 74/235 (31%), Gaps = 52/235 (22%)
Query: 6 IVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRD 65
I + K T Y PT L + E L S + G P + ++ +
Sbjct: 329 IDEHKVTQFYVAPTALRLLKRAGDSYIE-----NHSLKSLRCLGSVGEPIAAEVWEWYSE 383
Query: 66 TFG--------------------------------------IKHLIVKVVDKKGN--IVP 85
G + V+D +
Sbjct: 384 KIGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNT 443
Query: 86 MGMCGEVCYRGY--NVMLGYYGEENKILEN-----DEWFPSGDFFILHENGYGQVVGRIK 138
G + + + + ++ L+ ++ +GD ++GY ++GR+
Sbjct: 444 SHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDKDGYIWILGRVD 503
Query: 139 DIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLT 193
D++ G + EIE + P V E V G D+ G+ V A + LK +S +
Sbjct: 504 DVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWS 558
>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin
synthetase 1 {Bacillus brevis [TaxId: 1393]}
Length = 514
Score = 119 bits (300), Expect = 2e-32
Identities = 27/145 (18%), Positives = 61/145 (42%), Gaps = 11/145 (7%)
Query: 69 IKHLIVKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGE---------ENKILENDEWFPS 119
I++ + +VD+ + +G GE+C G + GY+ +N + ++ + +
Sbjct: 336 IQNTQIYIVDENLQLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKT 395
Query: 120 GDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEV 179
GD +G + +GRI + + G + +E+E +L H + E V D +
Sbjct: 396 GDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHKDHQEQPY 455
Query: 180 VVANIELKPGASLTQDDIKTYCKGK 204
+ A + L + ++ + +
Sbjct: 456 LCAYFVSEKHIPL--EQLRQFSSEE 478
>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus
subtilis [TaxId: 1423]}
Length = 536
Score = 119 bits (298), Expect = 4e-32
Identities = 41/134 (30%), Positives = 60/134 (44%), Gaps = 4/134 (2%)
Query: 74 VKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILENDEWFP---SGDFFILHENGY 130
+V D V G G + RG + GYY E + +GD L +GY
Sbjct: 363 SRVWDDHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGY 422
Query: 131 GQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGA 190
V GR KD I RGGE + +E+E L HP V +A + +PD+ LGE I + A
Sbjct: 423 IVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDEA 482
Query: 191 SLTQDDIKTYCKGK 204
++K + + +
Sbjct: 483 -PKAAELKAFLRER 495
>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes
sp. [TaxId: 512]}
Length = 503
Score = 118 bits (295), Expect = 7e-32
Identities = 45/146 (30%), Positives = 71/146 (48%), Gaps = 3/146 (2%)
Query: 62 KIRDTFGIKHLIVKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYG---EENKILENDEWFP 118
++ F + IV++ IV G GE+ + Y + D W+
Sbjct: 323 EMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGWYR 382
Query: 119 SGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGE 178
+ D + G +++GR+ D+II GGENI P EIE VL T P V E V G+ D+R G+
Sbjct: 383 TSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQ 442
Query: 179 VVVANIELKPGASLTQDDIKTYCKGK 204
V A + + G +L+ D + T+C+
Sbjct: 443 SVTACVVPRLGETLSADALDTFCRSS 468
>d2gmna1 d.157.1.1 (A:29-292) Zn metallo-beta-lactamase
{Bradyrhizobium japonicum [TaxId: 375]}
Length = 264
Score = 27.7 bits (60), Expect = 0.85
Identities = 16/65 (24%), Positives = 26/65 (40%), Gaps = 2/65 (3%)
Query: 119 SGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGE 178
+ IL + Q G IKD I + G +I+ +L TH + + + G
Sbjct: 34 TSQGLILMDTAMPQSTGMIKDNIAKLGFK--VADIKLILNTHAHLDHTGGFAEIKKETGA 91
Query: 179 VVVAN 183
+VA
Sbjct: 92 QLVAG 96
>d2q0ia1 d.157.1.14 (A:1-298) Quinolone signal response protein PqsE
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 298
Score = 25.3 bits (54), Expect = 5.3
Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 7/61 (11%)
Query: 100 MLGYYGEENKILENDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQT 159
+LG +L E + L E G + + + R + P ++ Y L T
Sbjct: 16 LLGDVQVPVFLLRLGE-----ASWALVEGGISRDAELVWADLCRWVAD--PSQVHYWLIT 68
Query: 160 H 160
H
Sbjct: 69 H 69
>d1k07a_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Fluoribacter
gormanii, (Legionella gormanii) FEZ-1 [TaxId: 464]}
Length = 262
Score = 24.9 bits (53), Expect = 8.2
Identities = 10/59 (16%), Positives = 20/59 (33%), Gaps = 2/59 (3%)
Query: 119 SGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLG 177
+ IL + V IK I + G + + +L +H A + ++
Sbjct: 31 TPRGNILINSDLEANVPMIKASIKKLG--FKFSDTKILLISHAHFDHAAGSELIKQQTK 87
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.141 0.420
Gapped
Lambda K H
0.267 0.0419 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 829,838
Number of extensions: 41478
Number of successful extensions: 123
Number of sequences better than 10.0: 1
Number of HSP's gapped: 116
Number of HSP's successfully gapped: 16
Length of query: 204
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 123
Effective length of database: 1,295,466
Effective search space: 159342318
Effective search space used: 159342318
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.2 bits)