BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13808
(190 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase
Length = 517
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 4/94 (4%)
Query: 92 DGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMG 151
D + I +TSGTTGHPK TH ++ + ++ ++ D ++LL +PMFH
Sbjct: 171 DNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRD-RLLLPLPMFHVAALTTV 229
Query: 152 ILNAMNHGSTTVVPAPSFKPMDSLRAIAKEK-CM 184
I +AM T++ P F I +E+ C+
Sbjct: 230 IFSAMR--GVTLISMPQFDATKVWSLIVEERVCI 261
>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis
pdb|3T5C|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
pdb|3T5C|B Chain B, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
Length = 396
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 4/94 (4%)
Query: 92 DGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMG 151
D + I +TSGTTGHPK TH ++ + ++ ++ D ++LL +PMFH
Sbjct: 157 DNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRD-RLLLPLPMFHVAALTTV 215
Query: 152 ILNAMNHGSTTVVPAPSFKPMDSLRAIAKEK-CM 184
I +AM T++ P F I +E+ C+
Sbjct: 216 IFSAMR--GVTLISMPQFDATKVWSLIVEERVCI 247
>pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From
Legionella Pneumophila
pdb|3LNV|A Chain A, The Crystal Structure Of Fatty Acyl-Adenylate Ligase From
L. Pneumophila In Complex With Acyl Adenylate And
Pyrophosphate
Length = 590
Score = 46.6 bits (109), Expect = 9e-06, Method: Composition-based stats.
Identities = 35/111 (31%), Positives = 52/111 (46%), Gaps = 6/111 (5%)
Query: 76 EYHRRREQISKSLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHK 135
E +R S+ D +Q+TSG+T HPK ++H+NL++N N I F D
Sbjct: 152 ELNRSSSWQPTSIKSNDIAFLQYTSGSTXHPKGVXVSHHNLLDNLNKIFT--SFHXNDET 209
Query: 136 ILLQ-VPMFHTFGTAMGILNAMNHGSTTVVPAP-SF--KPMDSLRAIAKEK 182
I+ +P H G IL + G + +P SF P+ L+ I K K
Sbjct: 210 IIFSWLPPHHDXGLIGCILTPIYGGIQAIXXSPFSFLQNPLSWLKHITKYK 260
>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO
4-Chlorobenzoate
pdb|3CW9|A Chain A, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
pdb|3CW9|B Chain B, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
Length = 504
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Query: 96 IQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQV-PMFHTFGTAMGILN 154
I +TSGTTG PKAA + + F+ ++ H ++L + P++H G ++
Sbjct: 158 IFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVA 217
Query: 155 AMNHGSTTVVPAPSFKPMDSLRAIAKEKC 183
A+ T VV F+P+D+L+ + +E+
Sbjct: 218 ALALDGTYVV-VEEFRPVDALQLVQQEQV 245
>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND
To 4cb
Length = 504
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Query: 96 IQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQV-PMFHTFGTAMGILN 154
I +TSGTTG PKAA + + F+ ++ H ++L + P++H G ++
Sbjct: 158 IFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVA 217
Query: 155 AMNHGSTTVVPAPSFKPMDSLRAIAKEKC 183
A+ T VV F+P+D+L+ + +E+
Sbjct: 218 ALALDGTYVV-VEEFRPVDALQLVQQEQV 245
>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QW0|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, I303a Mutation,
Bound To 3,4 Dichlorobenzoate
Length = 504
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Query: 96 IQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQV-PMFHTFGTAMGILN 154
I +TSGTTG PKAA + + F+ ++ H ++L + P++H G ++
Sbjct: 158 IFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVA 217
Query: 155 AMNHGSTTVVPAPSFKPMDSLRAIAKEKC 183
A+ T VV F+P+D+L+ + +E+
Sbjct: 218 ALALDGTYVV-VEEFRPVDALQLVQQEQV 245
>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QVY|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3,4- Dichlorobenzoate
Length = 504
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Query: 96 IQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQV-PMFHTFGTAMGILN 154
I +TSGTTG PKAA + + F+ ++ H ++L + P++H G ++
Sbjct: 158 IFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVA 217
Query: 155 AMNHGSTTVVPAPSFKPMDSLRAIAKEKC 183
A+ T VV F+P+D+L+ + +E+
Sbjct: 218 ALALDGTYVV-VEEFRPVDALQLVQQEQV 245
>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To
4cba-adenylate
Length = 504
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Query: 96 IQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQV-PMFHTFGTAMGILN 154
I +TSGTTG PKAA + + F+ ++ H ++L + P++H G ++
Sbjct: 158 IFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVA 217
Query: 155 AMNHGSTTVVPAPSFKPMDSLRAIAKEKC 183
A+ T VV F+P+D+L+ + +E+
Sbjct: 218 ALALDGTYVV-IEEFRPVDALQLVQQEQV 245
>pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED,
SELENOMETHIONINE
Length = 504
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 2/89 (2%)
Query: 96 IQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQV-PMFHTFGTAMGILN 154
I +TSGTTG PKAA + + F ++ H ++L + P++H G ++
Sbjct: 158 IFYTSGTTGLPKAAIIPQRAAESRVLFXSTQVGLRHGRHNVVLGLXPLYHVVGFFAVLVA 217
Query: 155 AMNHGSTTVVPAPSFKPMDSLRAIAKEKC 183
A+ T VV F+P+D+L+ + +E+
Sbjct: 218 ALALDGTYVV-VEEFRPVDALQLVQQEQV 245
>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Methylmalonyl-Coa And Amp Bound
pdb|3NYR|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Malonyl-Coa And Amp Bound
Length = 505
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Query: 96 IQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQ-VPMFHTFGTAMGILN 154
+ +TSGTTG PK A + L + + ++ T +L+Q +P+FH G +GIL
Sbjct: 160 VVYTSGTTGPPKGAVIPRRALATTLDALADAWQW--TGEDVLVQGLPLFHVHGLVLGILG 217
Query: 155 AMNHGSTT 162
+ G +
Sbjct: 218 PLRRGGSV 225
>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3A9V|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3NI2|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate:coa Ligase
Length = 536
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 10/97 (10%)
Query: 92 DGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDK------TDHKILLQVPMFHT 145
D + + ++SGTTG PK LTH LI + + ++++ D ++ IL +PMFH
Sbjct: 179 DVVALPYSSGTTGLPKGVMLTHKGLITS---VAQQVDGDNPNLYFHSEDVILCVLPMFHI 235
Query: 146 FGTAMGILNAMNHGSTTVVPAPSFKPMDSLRAIAKEK 182
+ +L + G+ ++ P F+ L I K K
Sbjct: 236 YALNSIMLCGLRVGAPILI-MPKFEIGSLLGLIEKYK 271
>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein
Length = 979
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 44/85 (51%), Gaps = 10/85 (11%)
Query: 92 DGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLE------FDKTDHKILLQVPMFHT 145
D + + ++SGTTG PK LTH L+ + + ++++ + +D IL +PMFH
Sbjct: 226 DVVALPYSSGTTGLPKGVMLTHKGLVTS---VAQQVDGENPNLYFHSDDVILCVLPMFHI 282
Query: 146 FGTAMGILNAMNHGSTTVVPAPSFK 170
+ +L + G+ ++ P F+
Sbjct: 283 YALNSIMLCGLRVGAAILI-MPKFE 306
>pdb|3L8C|A Chain A, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3L8C|B Chain B, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3LGX|A Chain A, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|B Chain B, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|C Chain C, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|D Chain D, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
Length = 521
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 30/55 (54%)
Query: 87 SLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVP 141
S+ D I FTSGTTG PK ++H NL++ +N++ + FD +L P
Sbjct: 141 SVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLAQP 195
>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|B Chain B, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|C Chain C, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|D Chain D, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 96 IQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFG 147
I +TSGTTG K A L+H NL +NS + F D ++ +P++HT G
Sbjct: 160 ILYTSGTTGRSKGAXLSHDNLASNSLTLVDYWRF-TPDDVLIHALPIYHTHG 210
>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
Query: 96 IQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNA 155
I +TSGTTG A L+H NL +NS + F D ++ +P++HT G + N
Sbjct: 160 ILYTSGTTGRSXGAMLSHDNLASNSLTLVDYWRF-TPDDVLIHALPIYHTHGLFVAS-NV 217
Query: 156 MNHGSTTVVPAPSFKPMDSLRAIAKEKCM 184
+++ P F P L +A+ +
Sbjct: 218 TLFARGSMIFLPXFDPDXILDLMARATVL 246
>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|B Chain B, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|C Chain C, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
Length = 506
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
Query: 96 IQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNA 155
I +TSGTTG A L+H NL +NS + F D ++ +P++HT G + N
Sbjct: 160 ILYTSGTTGRSXGAMLSHDNLASNSLTLVDYWRF-TPDDVLIHALPIYHTHGLFVAS-NV 217
Query: 156 MNHGSTTVVPAPSFKPMDSLRAIAKEKCM 184
+++ P F P L +A+ +
Sbjct: 218 TLFARGSMIFLPXFDPDXILDLMARATVL 246
>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3
Length = 503
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
Query: 96 IQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNA 155
I +TSGTTG A L+H NL +NS + F D ++ +P++HT G + N
Sbjct: 160 ILYTSGTTGRSXGAMLSHDNLASNSLTLVDYWRF-TPDDVLIHALPIYHTHGLFVAS-NV 217
Query: 156 MNHGSTTVVPAPSFKPMDSLRAIAKEKCM 184
+++ P F P L +A+ +
Sbjct: 218 TLFARGSMIFLPXFDPDXILDLMARATVL 246
>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
pdb|2V7B|B Chain B, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
Length = 529
Score = 36.2 bits (82), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 34/78 (43%)
Query: 89 NCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGT 148
C D ++SG+TG PK TH NL + K + + + +F +G
Sbjct: 181 GCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAENDVVFSAAKLFFAYGL 240
Query: 149 AMGILNAMNHGSTTVVPA 166
G+ ++ G+T ++ A
Sbjct: 241 GNGLTFPLSVGATAILMA 258
>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
pdb|3IVR|B Chain B, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
Length = 509
Score = 35.8 bits (81), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 38/96 (39%), Gaps = 3/96 (3%)
Query: 88 LNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFG 147
DG I T+ G P+ A ++ NL+ + + + D L +P+FH
Sbjct: 157 FGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRLTEADVN-LGMLPLFHV-- 213
Query: 148 TAMGILNAMNHGSTTVVPAPSFKPMDSLRAIAKEKC 183
T +G++ + V A F P + R I K
Sbjct: 214 TGLGLMLTLQQAGGASVIAAKFDPAQAARDIEAHKV 249
>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|B Chain B, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|C Chain C, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
Length = 501
Score = 34.7 bits (78), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 12/84 (14%)
Query: 84 ISKSLNCRDGINIQFTSGTTGHPKAA---FLTHYNLINNSNFIG--KRLEFDKTDHKILL 138
++ S N D +I FTSGTTG KA F HY ++ IG + L FD+ D L
Sbjct: 156 LNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHY-----ASAIGCKESLGFDR-DTNWLS 209
Query: 139 QVPMFHTFGTAMGILNAMNHGSTT 162
+P++H G ++ +L A+ G T
Sbjct: 210 VLPIYHISGLSV-LLRAVIEGFTV 232
>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1ULT|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
Length = 541
Score = 34.3 bits (77), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
Query: 91 RDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHK--ILLQVPMFHTFGT 148
R + +T+GTTG PK +H L+ +S ++ K +L VPMFH
Sbjct: 176 RAACGMAYTTGTTGLPKGVVYSHRALVLHS-LAASLVDGTALSEKDVVLPVVPMFHVNAW 234
Query: 149 AMGILNAMNHGSTTVVPAPSFKP 171
+ + G+ V+P P P
Sbjct: 235 CLPYAATLV-GAKQVLPGPRLDP 256
>pdb|3T5A|A Chain A, Crystal Structure Of N-Terminal Domain Of Faal28 G330w
Mutant From Mycobacterium Tuberculosis
Length = 480
Score = 33.1 bits (74), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 34/77 (44%), Gaps = 5/77 (6%)
Query: 96 IQFTSGTTGHPKAAFLTHYNLINN-----SNFIGKRLEFDKTDHKILLQVPMFHTFGTAM 150
+Q+TSG+T P ++H N+ N S + + ++ +P +H G +
Sbjct: 188 LQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWLPFYHDMGLVI 247
Query: 151 GILNAMNHGSTTVVPAP 167
GI + G V+ +P
Sbjct: 248 GICAPILGGYPAVLTSP 264
>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate
pdb|1MDF|A Chain A, Crystal Structure Of Dhbe In Absence Of Substrate
Length = 539
Score = 32.0 bits (71), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 96 IQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHK--ILLQVPMFHTFG-TAMGI 152
+Q + G+TG K TH + I + + + +E DH L +PM H + ++ G+
Sbjct: 187 LQLSGGSTGLSKLIPRTHDDYIYS---LKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGV 243
Query: 153 LNAMNHGSTTVVPAPSFKPMDSLRAIAKEKC 183
L + G V+ +PS P D+ I +EK
Sbjct: 244 LGVLYAGGRVVL-SPSPSPDDAFPLIEREKV 273
>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG3|B Chain B, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG4|A Chain A, Acetyl Coa Synthetase, Salmonella Enterica
pdb|1PG4|B Chain B, Acetyl Coa Synthetase, Salmonella Enterica
Length = 652
Score = 32.0 bits (71), Expect = 0.23, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 6/45 (13%)
Query: 68 DIMQGAGPEYHRRREQISKSLNCRDGINIQFTSGTTGHPKAAFLT 112
D+++ A PE+ +++N D + I +TSG+TG PK T
Sbjct: 239 DLIEKASPEHQ------PEAMNAEDPLFILYTSGSTGKPKGVLHT 277
>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation
pdb|2P2M|B Chain B, Acetyl-Coa Synthetase, R194a Mutation
Length = 652
Score = 32.0 bits (71), Expect = 0.23, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 6/45 (13%)
Query: 68 DIMQGAGPEYHRRREQISKSLNCRDGINIQFTSGTTGHPKAAFLT 112
D+++ A PE+ +++N D + I +TSG+TG PK T
Sbjct: 239 DLIEKASPEHQ------PEAMNAEDPLFILYTSGSTGKPKGVLHT 277
>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation
pdb|2P20|B Chain B, Acetyl-Coa Synthetase, R584a Mutation
Length = 652
Score = 32.0 bits (71), Expect = 0.23, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 6/45 (13%)
Query: 68 DIMQGAGPEYHRRREQISKSLNCRDGINIQFTSGTTGHPKAAFLT 112
D+++ A PE+ +++N D + I +TSG+TG PK T
Sbjct: 239 DLIEKASPEHQ------PEAMNAEDPLFILYTSGSTGKPKGVLHT 277
>pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation
pdb|2P2Q|B Chain B, Acetyl-Coa Synthetase, R584e Mutation
Length = 652
Score = 32.0 bits (71), Expect = 0.23, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 6/45 (13%)
Query: 68 DIMQGAGPEYHRRREQISKSLNCRDGINIQFTSGTTGHPKAAFLT 112
D+++ A PE+ +++N D + I +TSG+TG PK T
Sbjct: 239 DLIEKASPEHQ------PEAMNAEDPLFILYTSGSTGKPKGVLHT 277
>pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation
pdb|2P2J|B Chain B, Acetyl-Coa Synthetase, K609a Mutation
Length = 652
Score = 32.0 bits (71), Expect = 0.23, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 6/45 (13%)
Query: 68 DIMQGAGPEYHRRREQISKSLNCRDGINIQFTSGTTGHPKAAFLT 112
D+++ A PE+ +++N D + I +TSG+TG PK T
Sbjct: 239 DLIEKASPEHQ------PEAMNAEDPLFILYTSGSTGKPKGVLHT 277
>pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
pdb|2P2F|B Chain B, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
Length = 652
Score = 32.0 bits (71), Expect = 0.24, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 6/45 (13%)
Query: 68 DIMQGAGPEYHRRREQISKSLNCRDGINIQFTSGTTGHPKAAFLT 112
D+++ A PE+ +++N D + I +TSG+TG PK T
Sbjct: 239 DLIEKASPEHQ------PEAMNAEDPLFILYTSGSTGKPKGVLHT 277
>pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation
pdb|2P2B|B Chain B, Acetyl-coa Synthetase, V386a Mutation
Length = 652
Score = 32.0 bits (71), Expect = 0.24, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 6/45 (13%)
Query: 68 DIMQGAGPEYHRRREQISKSLNCRDGINIQFTSGTTGHPKAAFLT 112
D+++ A PE+ +++N D + I +TSG+TG PK T
Sbjct: 239 DLIEKASPEHQ------PEAMNAEDPLFILYTSGSTGKPKGVLHT 277
>pdb|3E53|A Chain A, Crystal Structure Of N-Terminal Domain Of A Fatty Acyl Amp
Ligase Faal28 From Mycobacterium Tuberculosis
Length = 480
Score = 31.6 bits (70), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 33/77 (42%), Gaps = 5/77 (6%)
Query: 96 IQFTSGTTGHPKAAFLTHYNLINN-----SNFIGKRLEFDKTDHKILLQVPMFHTFGTAM 150
+Q+TSG+T P +H N+ N S + + ++ +P +H G +
Sbjct: 188 LQYTSGSTRTPAGVVXSHQNVRVNFEQLXSGYFADTDGIPPPNSALVSWLPFYHDXGLVI 247
Query: 151 GILNAMNHGSTTVVPAP 167
GI + G V+ +P
Sbjct: 248 GICAPILGGYPAVLTSP 264
>pdb|3QOV|A Chain A, Crystal Structure Of A Hypothetical Acyl-Coa Ligase
(Bt_0428) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.20 A Resolution
pdb|3QOV|B Chain B, Crystal Structure Of A Hypothetical Acyl-Coa Ligase
(Bt_0428) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.20 A Resolution
pdb|3QOV|C Chain C, Crystal Structure Of A Hypothetical Acyl-Coa Ligase
(Bt_0428) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.20 A Resolution
pdb|3QOV|D Chain D, Crystal Structure Of A Hypothetical Acyl-Coa Ligase
(Bt_0428) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.20 A Resolution
pdb|3S89|A Chain A, Crystal Structure Of A Hypothetical Acyl-Coa Ligase
(Bt_0428) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.41 A Resolution
pdb|3S89|B Chain B, Crystal Structure Of A Hypothetical Acyl-Coa Ligase
(Bt_0428) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.41 A Resolution
pdb|3S89|C Chain C, Crystal Structure Of A Hypothetical Acyl-Coa Ligase
(Bt_0428) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.41 A Resolution
pdb|3S89|D Chain D, Crystal Structure Of A Hypothetical Acyl-Coa Ligase
(Bt_0428) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.41 A Resolution
Length = 436
Score = 31.6 bits (70), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 23/37 (62%)
Query: 91 RDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRL 127
RDG+ I +SGTTG+P + ++L + +N + + L
Sbjct: 86 RDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCL 122
>pdb|3VNQ|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Atp From Streptomyces
pdb|3VNR|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Aminobutyric Acid And Amp From Streptomyces
pdb|3VNS|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With D-valine And Amp From Streptomyces
Length = 544
Score = 31.2 bits (69), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 8/79 (10%)
Query: 89 NCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFG- 147
D + +TSGTTG+PK + H N++ +F D +L FH+
Sbjct: 173 GAEDMAYVIYTSGTTGNPKGVPVRHANVLALLAGAPSVFDFSGDDRWLL-----FHSLSF 227
Query: 148 --TAMGILNAMNHGSTTVV 164
+ I A + G+ VV
Sbjct: 228 DFSVWEIWGAFSTGAELVV 246
>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Red-Color Emission S286n Mutant Complexed
With High-Energy Intermediate Analogue
Length = 548
Score = 30.8 bits (68), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 13/78 (16%)
Query: 80 RREQISKSLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTD--HKIL 137
R+EQ++ +N +SG+TG PK LTH N++ + + ++ +L
Sbjct: 190 RKEQVALIMN---------SSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVL 240
Query: 138 LQVPMFHTFG--TAMGIL 153
VP H FG T +G L
Sbjct: 241 TVVPFHHGFGMFTTLGYL 258
>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With High-Energy Intermediate
Analogue
Length = 548
Score = 30.8 bits (68), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 13/78 (16%)
Query: 80 RREQISKSLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTD--HKIL 137
R+EQ++ +N +SG+TG PK LTH N++ + + ++ +L
Sbjct: 190 RKEQVALIMN---------SSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVL 240
Query: 138 LQVPMFHTFG--TAMGIL 153
VP H FG T +G L
Sbjct: 241 TVVPFHHGFGMFTTLGYL 258
>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Mgatp
pdb|2D1R|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Oxyluciferin And Amp
Length = 548
Score = 30.8 bits (68), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 13/78 (16%)
Query: 80 RREQISKSLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTD--HKIL 137
R+EQ++ +N +SG+TG PK LTH N++ + + ++ +L
Sbjct: 190 RKEQVALIMN---------SSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVL 240
Query: 138 LQVPMFHTFG--TAMGIL 153
VP H FG T +G L
Sbjct: 241 TVVPFHHGFGMFTTLGYL 258
>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A
Nonribosomal Peptide Synthetase Termination Module
Length = 1304
Score = 30.4 bits (67), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 79 RRREQISK---SLNCRDGINIQFTSGTTGHPKAAFLTHYNL 116
R EQ S +++ D I +TSGTTG PK TH N+
Sbjct: 592 RFEEQASDPATAIDPNDPAYIMYTSGTTGKPKGNITTHANI 632
>pdb|2I7X|A Chain A, Structure Of Yeast Cpsf-100 (Ydh1p)
Length = 717
Score = 29.3 bits (64), Expect = 1.4, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 13 DRIGESQPFRERTLSHQDKIRPGRESN 39
DR G SQPF++R+ +D ++ G S+
Sbjct: 215 DRFGSSQPFKKRSKIFKDTLKKGLSSD 241
>pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
pdb|1AMU|B Chain B, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
Length = 563
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 96 IQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTD 133
+ +TSGTTG+PK L H + N F L + D
Sbjct: 187 VIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKD 224
>pdb|3E7W|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
pdb|3E7X|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
Length = 511
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 96 IQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNA 155
I +TSG+TG+PK ++ NL + +++I +F + KI L F + M +
Sbjct: 148 IIYTSGSTGNPKGVQISAANLQSFTDWICA--DFPVSGGKIFLNQAPFSFDLSVMDLYPC 205
Query: 156 MNHGST 161
+ G T
Sbjct: 206 LQSGGT 211
>pdb|4DG8|A Chain A, Structure Of Pa1221, An Nrps Protein Containing
Adenylation And Pcp Domains
pdb|4DG9|A Chain A, Structure Of Holo-Pa1221, An Nrps Protein Containing
Adenylation And Pcp Domains Bound To Vinylsulfonamide
Inhibitor
Length = 620
Score = 28.5 bits (62), Expect = 2.1, Method: Composition-based stats.
Identities = 12/18 (66%), Positives = 13/18 (72%)
Query: 96 IQFTSGTTGHPKAAFLTH 113
I F+SGTTG PKA TH
Sbjct: 169 INFSSGTTGRPKAIACTH 186
>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris
Turkestanicus Luciferase
Length = 582
Score = 28.1 bits (61), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Query: 96 IQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKT--DHKILLQVPMFHTFG--TAMG 151
I +SG+TG PK LTH N+ + + ++ D IL +P H FG T +G
Sbjct: 229 IMNSSGSTGLPKGVELTHKNICVRFSHCRDPVFGNQIIPDTAILTVIPFHHGFGMFTTLG 288
Query: 152 ILNA 155
L
Sbjct: 289 YLTC 292
>pdb|3VML|A Chain A, Chimera 3-Isopropylmalate Dehydrogenase Between Shewanella
Oneidensis Mr-1 (O) And Shewanella Benthica Db21 Mt-2
(M) From N-Terminal: 20% O Middle 70% M Residual 10% O
Length = 375
Score = 27.3 bits (59), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 72 GAGPEYHRRREQISKSLNCRDGINIQFTSGTTG 104
G GPE ++ K++ R G+NI++T G
Sbjct: 23 GIGPEVMAEARKVLKAVEARFGLNIEYTEYDVG 55
>pdb|3CQ0|A Chain A, Crystal Structure Of Tal2_yeast
pdb|3CQ0|B Chain B, Crystal Structure Of Tal2_yeast
Length = 339
Score = 27.3 bits (59), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 14/104 (13%)
Query: 83 QISKSLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPM 142
Q ++ L + GI+ T +A N+ S F+G+ ++F K
Sbjct: 153 QAARELEVKHGIHCNMTL-LFSFTQAVACAEANVTLISPFVGRIMDFYKA------LSGK 205
Query: 143 FHTFGTAMGILNAMN-------HGSTTVVPAPSFKPMDSLRAIA 179
+T T G+L+ HG T V A SF+ +D L+A+A
Sbjct: 206 DYTAETDPGVLSVKKIYSYYKRHGYATEVMAASFRNLDELKALA 249
>pdb|3VKZ|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1 At Atmospheric Pressure
pdb|3VL2|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1 At 160 Mpa
pdb|3VL3|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1 At 340 Mpa
pdb|3VL4|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1 At 410 Mpa
pdb|3VL6|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1 At 580 Mpa
pdb|3VL7|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1 At 650 Mpa
pdb|3VMJ|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1
Length = 375
Score = 27.3 bits (59), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 72 GAGPEYHRRREQISKSLNCRDGINIQFTSGTTG 104
G GPE ++ K++ R G+NI++T G
Sbjct: 23 GIGPEVMAEARKVLKAVEARFGLNIEYTEYDVG 55
>pdb|3ITE|A Chain A, The Third Adenylation Domain Of The Fungal Sidn Non-
Ribosomal Peptide Synthetase
pdb|3ITE|B Chain B, The Third Adenylation Domain Of The Fungal Sidn Non-
Ribosomal Peptide Synthetase
Length = 562
Score = 26.6 bits (57), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 98 FTSGTTGHPKAAFLTHYNLINNSNFIGKRL 127
+TSG+TG PK ++ +NL + S+ GK +
Sbjct: 182 YTSGSTGTPKGVRVSRHNLSSFSDAWGKLI 211
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,570,310
Number of Sequences: 62578
Number of extensions: 218967
Number of successful extensions: 497
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 458
Number of HSP's gapped (non-prelim): 48
length of query: 190
length of database: 14,973,337
effective HSP length: 93
effective length of query: 97
effective length of database: 9,153,583
effective search space: 887897551
effective search space used: 887897551
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)