RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13808
(190 letters)
>gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated.
Length = 559
Score = 142 bits (361), Expect = 3e-40
Identities = 44/122 (36%), Positives = 69/122 (56%), Gaps = 1/122 (0%)
Query: 62 GTFRLSDIMQGAGPEYHRRREQISKSLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSN 121
G +++ +L+ D INIQ+TSGTTG PK A LTH N++NN
Sbjct: 170 GMLNFDELLALGRAVDDAELAARQATLDPDDPINIQYTSGTTGFPKGATLTHRNILNNGY 229
Query: 122 FIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVPAPSFKPMDSLRAIAKE 181
FIG+ ++ + D ++ + VP++H FG +G L + HG+T V P F P+ +L A+ +E
Sbjct: 230 FIGEAMKLTEED-RLCIPVPLYHCFGMVLGNLACVTHGATMVYPGEGFDPLATLAAVEEE 288
Query: 182 KC 183
+C
Sbjct: 289 RC 290
>gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 347
Score = 120 bits (304), Expect = 3e-33
Identities = 40/94 (42%), Positives = 57/94 (60%), Gaps = 2/94 (2%)
Query: 90 CRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTA 149
D IQ+TSGTTG PK A LTH N++NN I +RL + D + L+ VP+FH FG
Sbjct: 1 PDDPALIQYTSGTTGRPKGAMLTHRNVLNNGYSIARRLGLTEGD-RTLVPVPLFHVFGLV 59
Query: 150 MGILNAMNHGSTTVVPAPSFKPMDSLRAIAKEKC 183
+G+L ++ G+ T+V F P +LR I +E+
Sbjct: 60 LGVLASLTAGA-TLVLMEKFDPGAALRLIERERI 92
>gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional.
Length = 558
Score = 118 bits (298), Expect = 2e-31
Identities = 43/115 (37%), Positives = 68/115 (59%), Gaps = 2/115 (1%)
Query: 70 MQGAGPEYHRRR-EQISKSLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLE 128
+Q G R + SL+ D INIQ+TSGTTG PK A L+H+N++NN F+ + L
Sbjct: 179 LQARGETVSREALAERQASLDRDDPINIQYTSGTTGFPKGATLSHHNILNNGYFVAESLG 238
Query: 129 FDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVPAPSFKPMDSLRAIAKEKC 183
+ D ++ + VP++H FG + L M G+ V P +F P+ +L+A+ +E+C
Sbjct: 239 LTEHD-RLCVPVPLYHCFGMVLANLGCMTVGACLVYPNEAFDPLATLQAVEEERC 292
>gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases
II [Lipid metabolism / Secondary metabolites
biosynthesis, transport, and catabolism].
Length = 534
Score = 83.7 bits (207), Expect = 4e-19
Identities = 36/95 (37%), Positives = 49/95 (51%), Gaps = 2/95 (2%)
Query: 91 RDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDH-KILLQVPMFHTFGTA 149
D + +TSGTTG PK LTH NL+ N+ I L T +L +P+FH FG
Sbjct: 171 DDLAFLLYTSGTTGLPKGVVLTHRNLLANAAGIAAALGGGLTPDDVVLSWLPLFHIFGLI 230
Query: 150 MGILNAMNHGSTTVVPAP-SFKPMDSLRAIAKEKC 183
+G+L + G T V+ +P F P + L I K K
Sbjct: 231 VGLLAPLLGGGTLVLLSPEPFDPEEVLWLIEKYKV 265
>gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated.
Length = 513
Score = 81.1 bits (201), Expect = 3e-18
Identities = 34/87 (39%), Positives = 47/87 (54%), Gaps = 2/87 (2%)
Query: 96 IQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNA 155
I FTSGTTG PK A LTH L++N+ + L + D + L P FH FG G+
Sbjct: 171 ILFTSGTTGRPKGAMLTHRQLLSNAADWAEYLGLTEGD-RYLAANPFFHVFGYKAGVNAP 229
Query: 156 MNHGSTTVVPAPSFKPMDSLRAIAKEK 182
+ G+ T++P P F P + R I E+
Sbjct: 230 LMRGA-TILPLPVFDPDEVFRLIETER 255
>gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme.
Length = 412
Score = 80.5 bits (199), Expect = 4e-18
Identities = 31/139 (22%), Positives = 48/139 (34%), Gaps = 3/139 (2%)
Query: 46 KADALPTKLTRLALRMGTFRLSDIMQGAGPEYHRRREQISKSLNCRDGINIQFTSGTTGH 105
L + + +G + E + ++ D I +TSGTTG
Sbjct: 86 LEVLLKLLVLLALIIVGDDGEGLDLLDDELLAGASAEPPAPPVDPDDLAYIIYTSGTTGK 145
Query: 106 PKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVP 165
PK LTH NL+ + + +R D +L + H G+ I + G T V+
Sbjct: 146 PKGVMLTHRNLLALAAGLAERFGLTPGD--RVLLLLPLHFDGSVWEIFGPLLAGGTLVLV 203
Query: 166 APSFKPMDSL-RAIAKEKC 183
L I K K
Sbjct: 204 PKFTLDPARLLDLIEKYKV 222
>gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA
synthetases similar to Escherichia coli FadD. This
subfamily of the AMP-forming adenylation family contains
Escherichia coli FadD and similar prokaryotic fatty acid
CoA synthetases. FadD was characterized as a long-chain
fatty acid CoA synthetase. The gene fadD is regulated by
the fatty acid regulatory protein FadR. Fatty acid CoA
synthetase catalyzes the formation of fatty acyl-CoA in
a two-step reaction: the formation of a fatty acyl-AMP
molecule as an intermediate, followed by the formation
of a fatty acyl-CoA. This is a required step before free
fatty acids can participate in most catabolic and
anabolic reactions.
Length = 468
Score = 80.3 bits (199), Expect = 5e-18
Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 2/89 (2%)
Query: 96 IQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQV-PMFHTFGTAMGILN 154
+Q+T GTTG PK A LTH NL+ N I ++ + L P+FH FG + +L
Sbjct: 130 LQYTGGTTGVPKGAMLTHRNLVANVQQIAAWVKDLREGEDRFLTALPLFHIFGLTVNMLL 189
Query: 155 AMNHGSTTVVPAPSFKPMDSLRAIAKEKC 183
+ G+ T V P+F+P++ L+ I + +
Sbjct: 190 GLRLGA-TNVLVPNFRPINVLKEIKRYRF 217
>gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated.
Length = 521
Score = 72.1 bits (178), Expect = 4e-15
Identities = 32/85 (37%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
Query: 98 FTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMN 157
+TSGTTGHPK L+H NL +S + L+ + D L+ VPMFH + L A+
Sbjct: 174 YTSGTTGHPKGVVLSHRNLFLHSLAVCAWLKLSRDD-VYLVIVPMFHVHAWGLPYL-ALM 231
Query: 158 HGSTTVVPAPSFKPMDSLRAIAKEK 182
G+ V+P F P + L I E+
Sbjct: 232 AGAKQVIPR-RFDPENLLDLIETER 255
>gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar
proteins. Bile acid-Coenzyme A ligase catalyzes the
formation of bile acid-CoA conjugates in a two-step
reaction: the formation of a bile acid-AMP molecule as
an intermediate, followed by the formation of a bile
acid-CoA. This ligase requires a bile acid with a free
carboxyl group, ATP, Mg2+, and CoA for synthesis of the
final bile acid-CoA conjugate. The bile acid-CoA
ligation is believed to be the initial step in the bile
acid 7alpha-dehydroxylation pathway in the intestinal
bacterium Eubacterium sp.
Length = 342
Score = 71.0 bits (175), Expect = 7e-15
Identities = 30/93 (32%), Positives = 43/93 (46%), Gaps = 5/93 (5%)
Query: 91 RDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQV-PMFHTFGTA 149
D I +TSGTTG PK LTH NL +N + D + + L P++H
Sbjct: 1 DDPALILYTSGTTGRPKGVMLTHRNL--LANAVNALAGVDLSPGDVYLLAAPLYHA-AGG 57
Query: 150 MGILNAMNHGSTTVVPAPSFKPMDSLRAIAKEK 182
+ +L A+ G T V+ P F P L I + +
Sbjct: 58 LFLLPALAAGGTVVLM-PKFDPEAVLDLIERHR 89
>gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I. This
family includes acyl- and aryl-CoA ligases, as well as
the adenylation domain of nonribosomal peptide
synthetases and firefly luciferases. The
adenylate-forming enzymes catalyze an ATP-dependent
two-step reaction to first activate a carboxylate
substrate as an adenylate and then transfer the
carboxylate to the pantetheine group of either coenzyme
A or an acyl-carrier protein. The active site of the
domain is located at the interface of a large N-terminal
subdomain and a smaller C-terminal subdomain.
Length = 338
Score = 69.6 bits (171), Expect = 2e-14
Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Query: 92 DGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMG 151
D I +TSGTTG PK L+H NL+ N+ + + + + D +L +P+FH G G
Sbjct: 1 DPAFILYTSGTTGKPKGVVLSHRNLLANAQALAQAIGLTEGD-VLLSVLPLFHVVGGGSG 59
Query: 152 ILNAMNHGSTTVVPAPSFKPMDSLRAIAKEKC 183
+L A+ G T V+ P+ L I + +
Sbjct: 60 LLGALLAGGTVVLYEGFPFPLSFLELIEQYRV 91
>gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL). FAAL belongs to the
class I adenylate forming enzyme family and is
homologous to fatty acyl-coenzyme A (CoA) ligases
(FACLs). However, FAALs produce only the acyl adenylate
and are unable to perform the thioester-forming
reaction, while FACLs perform a two-step catalytic
reaction; AMP ligation followed by CoA ligation using
ATP and CoA as cofactors. FAALs have insertion motifs
between the N-terminal and C-terminal subdomains that
distinguish them from the FACLs. This insertion motif
precludes the binding of CoA, thus preventing CoA
ligation. It has been suggested that the acyl adenylates
serve as substrates for multifunctional polyketide
synthases to permit synthesis of complex lipids such as
phthiocerol dimycocerosate, sulfolipids, mycolic acids,
and mycobactin.
Length = 547
Score = 69.9 bits (172), Expect = 2e-14
Identities = 29/91 (31%), Positives = 49/91 (53%), Gaps = 4/91 (4%)
Query: 96 IQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNA 155
+Q+TSG+TG PK +TH NL+ N I + D D + +P++H G G+L
Sbjct: 153 LQYTSGSTGAPKGVMVTHGNLLANLRAIARAFGLDPDDV-GVSWLPLYHDMGLIGGLLQP 211
Query: 156 MNHGSTTVVPAP-SF--KPMDSLRAIAKEKC 183
+ G V+ +P +F +P+ L AI++ +
Sbjct: 212 LYAGFPVVLMSPLAFLRRPLRWLEAISRYRA 242
>gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein
synthetase (also called 2-acylglycerophosphoethanolamine
acyltransferase, Aas). Acyl-acyl carrier protein
synthase (Aas) is a membrane protein responsible for a
minor pathway of incorporating exogenous fatty acids
into membrane phospholipids. Its in vitro activity is
characterized by the ligation of free fatty acids
between 8 and 18 carbons in length to the acyl carrier
protein sulfydryl group (ACP-SH) in the presence of ATP
and Mg2+. However, its in vivo function is as a
2-acylglycerophosphoethanolamine (2-acyl-GPE)
acyltransferase. The reaction occurs in two steps: the
acyl chain is first esterified to acyl carrier protein
(ACP) via a thioester bond, followed by a second step
where the acyl chain is transferred to a
2-acyllysophospholipid, thus completing the
transacylation reaction. This model represents the
C-terminal domain of the enzyme, which belongs to the
class I adenylate-forming enzyme family, including
acyl-CoA synthetases.
Length = 489
Score = 64.9 bits (159), Expect = 1e-12
Identities = 30/85 (35%), Positives = 48/85 (56%), Gaps = 5/85 (5%)
Query: 96 IQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNA 155
I FTSG+ G PK L+H NL+ N + I ++ T+ +L +P+FH FG + +L
Sbjct: 150 ILFTSGSEGLPKGVVLSHRNLLANIDQIAAVIDL-NTEDVLLGALPLFHAFGLTVTLLLP 208
Query: 156 MNHGSTTVVPAPSFKPMDSLRAIAK 180
+ G VV P+ P+D+ + IA+
Sbjct: 209 LLTG-LRVVYYPN--PLDA-KKIAE 229
>gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 350
Score = 63.8 bits (156), Expect = 2e-12
Identities = 32/89 (35%), Positives = 47/89 (52%), Gaps = 4/89 (4%)
Query: 96 IQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNA 155
I +TSG+TG PK L+H NL + I + LE + D +IL +P +G + +L A
Sbjct: 7 IIYTSGSTGEPKGVMLSHRNLTAGARSIAQYLELTEDD-RILAVLPFSFDYGLSQ-LLTA 64
Query: 156 MNHGSTTVVPAPSFK-PMDSLRAIAKEKC 183
G T+V F P D L+ +AKE+
Sbjct: 65 FRVGG-TLVLESRFAFPRDVLKHLAKERI 92
>gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated.
Length = 573
Score = 63.5 bits (155), Expect = 4e-12
Identities = 45/159 (28%), Positives = 63/159 (39%), Gaps = 34/159 (21%)
Query: 48 DALPTKLTRLALRM-----------------GTFRLSDIMQGAGP-----EYHRRREQIS 85
A+P L RLALR+ GT ++ A H R
Sbjct: 162 AAMPL-LQRLALRLPIPALRKARAALTGPAPGTVPWETLVDAAIGGDGSDVSHPRPTPDD 220
Query: 86 KSLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRL--EFDKTDHKILLQVPMF 143
+L I +TSGTTG PK A LTH NL N+ GK ++L +PMF
Sbjct: 221 VAL-------ILYTSGTTGKPKGAQLTHRNLFANA-AQGKAWVPGLGDGPERVLAALPMF 272
Query: 144 HTFGTAMGILNAMNHGSTTVVPAPSFKPMDSLRAIAKEK 182
H +G + + A++ G V+ P+ L A+ K
Sbjct: 273 HAYGLTLCLTLAVSIGGELVL-LPAPDIDLILDAMKKHP 310
>gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL). 4-Coumarate:coenzyme A
ligase is a key enzyme in the phenylpropanoid metabolic
pathway for monolignol and flavonoid biosynthesis. It
catalyzes the synthesis of hydroxycinnamate-CoA
thioesters in a two-step reaction, involving the
formation of hydroxycinnamate-AMP anhydride and the
nucleophilic substitution of AMP by CoA. The
phenylpropanoid pathway is one of the most important
secondary metabolism pathways in plants and
hydroxycinnamate-CoA thioesters are the precursors of
lignin and other important phenylpropanoids.
Length = 504
Score = 62.3 bits (152), Expect = 1e-11
Identities = 32/90 (35%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
Query: 96 IQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQV-PMFHTFGTAMGILN 154
+ ++SGTTG K LTH NLI N + + + L V PMFH +G + +L
Sbjct: 163 LPYSSGTTGRSKGVMLTHRNLIANVAQLVAGEGPNFDREDVTLCVLPMFHIYGLTVILLA 222
Query: 155 AMNHGSTTVVPAPSFKPMDSLRAIAKEKCM 184
+ G+T VV P F L AI K K
Sbjct: 223 LLRLGATVVV-MPRFDLEKFLAAIEKYKVT 251
>gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and
Bubblegum-like very long-chain fatty acid CoA
synthetases. This family includes long-chain fatty acid
(C12-C20) CoA synthetases and Bubblegum-like very
long-chain (>C20) fatty acid CoA synthetases. FACS
catalyzes the formation of fatty acyl-CoA in a two-step
reaction: the formation of a fatty acyl-AMP molecule as
an intermediate, and the formation of a fatty acyl-CoA.
Eukaryotes generally have multiple isoforms of LC-FACS
genes with multiple splice variants. For example, nine
genes are found in Arabidopsis and six genes are
expressed in mammalian cells. Drosophila melanogaster
mutant bubblegum (BGM) have elevated levels of
very-long-chain fatty acids (VLCFA) caused by a
defective gene later named bubblegum. The human homolog
(hsBG) of bubblegum has been characterized as a very
long chain fatty acid CoA synthetase that functions
specifically in the brain; hsBG may play a central role
in brain VLCFA metabolism and myelinogenesis. Free fatty
acids must be "activated" to their CoA thioesters before
participating in most catabolic and anabolic reactions.
Length = 456
Score = 60.2 bits (147), Expect = 5e-11
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Query: 98 FTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMN 157
+TSGTTG+PK LTH NL+ + + + + D +L +P+ H F +G ++
Sbjct: 95 YTSGTTGNPKGVMLTHRNLLAQAAALLEVIPLSPGDR-VLSFLPLAHVFEQRLGEYLPLS 153
Query: 158 HGSTTVVPAPSFKPMDSLRAIA 179
G+ ++ LR +
Sbjct: 154 SGARVNFAESPETLLEDLREVR 175
>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid
CoA ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions. Members of this
family include DitJ from Pseudomonas and similar
proteins.
Length = 421
Score = 59.1 bits (144), Expect = 1e-10
Identities = 26/76 (34%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Query: 96 IQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNA 155
I +TSGTTG PK LTH L+ + + L D +L +P+FH A + A
Sbjct: 86 ILYTSGTTGPPKGVLLTHAQLLFAARLAARLLGLRPDD-VLLTPLPLFHINAQAYSVYAA 144
Query: 156 MNHGSTTVVPAPSFKP 171
+ G T+V P F
Sbjct: 145 LLVG-ATLVLLPRFSA 159
>gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting
insects and 4-Coumarate-CoA Ligase (4CL). This family
contains two functionally unique groups of proteins; one
group is insect firefly luciferases and the other is
plant 4-coumarate:coenzyme A ligases. However, they
share significant sequence similarity in spite of their
functional diversity. Luciferase catalyzes the
production of light in the presence of MgATP, molecular
oxygen, and luciferin. In the first step, luciferin is
activated by acylation of its carboxylate group with
ATP, resulting in an enzyme-bound luciferyl adenylate.
In the second step, luciferyl adenylate reacts with
molecular oxygen, producing an enzyme-bound excited
state product (Luc=O*) and releasing AMP. This
excited-state product then decays to the ground state
(Luc=O), emitting a quantum of visible light.
4-coumarate:coenzyme A ligase is a key enzyme in the
phenylpropanoid metabolic pathway for monolignol and
flavonoid biosynthesis. It catalyzes the synthesis of
hydroxycinnamate-CoA thioesters in a two-step reaction,
involving the formation of hydroxycinnamate-AMP
anhydride and then the nucleophilic substitution of AMP
by CoA. The phenylpropanoid pathway is one of the most
important secondary metabolism pathways in plants and
hydroxycinnamate-CoA thioesters are the precursors of
lignin and other important phenylpropanoids.
Length = 487
Score = 58.4 bits (142), Expect = 2e-10
Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 6/92 (6%)
Query: 96 IQFTSGTTGHPKAAFLTHYNLINN---SNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGI 152
+ ++SGTTG PK L+H N+I N K D +L +P +H +G
Sbjct: 151 LLYSSGTTGLPKGVMLSHKNIIANLSQVQDTLKGNPDSSND-VVLTFLPFYHAYG-LTTT 208
Query: 153 LNAMNHGSTTVVPAPSFKPMDSLRAIAKEKCM 184
L ++ G+T ++ P F L+ I K K
Sbjct: 209 LASLLCGATVII-MPKFDSETFLKLIEKYKVT 239
>gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed.
Length = 547
Score = 57.8 bits (140), Expect = 3e-10
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
Query: 96 IQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNA 155
+ FTSGT G PK LTH N++ + RL D ++ P+ H G G+
Sbjct: 192 VLFTSGTEGLPKGVMLTHNNILASERAYCARLNLTWQD-VFMMPAPLGHATGFLHGVTAP 250
Query: 156 MNHGSTTVVPAPSFKPMDSLRAIAKEKC 183
G+ +V+ F P L + +++C
Sbjct: 251 FLIGARSVL-LDIFTPDACLALLEQQRC 277
>gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS). MCS catalyzes the
formation of malonyl-CoA in a two-step reaction
consisting of the adenylation of malonate with ATP,
followed by malonyl transfer from malonyl-AMP to CoA.
Malonic acid and its derivatives are the building blocks
of polyketides and malonyl-CoA serves as the substrate
of polyketide synthases. Malonyl-CoA synthetase has
broad substrate tolerance and can activate a variety of
malonyl acid derivatives. MCS may play an important role
in biosynthesis of polyketides, the important secondary
metabolites with therapeutic and agrochemical utility.
Length = 430
Score = 57.6 bits (140), Expect = 3e-10
Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 96 IQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNA 155
I +TSGTTG PK LTH NL N+ + + + +D +L +P+ H G +
Sbjct: 93 IIYTSGTTGRPKGVVLTHGNLAANARALVEAWRWTASDV-LLHALPLHHVHGLFNALHCP 151
Query: 156 MNHGSTTVVPAPSFKP 171
+ G+ +V P F P
Sbjct: 152 LWAGA-SVEFLPRFDP 166
>gnl|CDD|213305 cd05939, hsFATP4_like, Fatty acid transport proteins (FATP),
including FATP4 and FATP1, and similar proteins. Fatty
acid transport protein (FATP) transports long-chain or
very-long-chain fatty acids across the plasma membrane.
At least five copies of FATPs are identified in
mammalian cells. This family includes FATP4, FATP1, and
homologous proteins. Each FATP has unique patterns of
tissue distribution. FATP4 is mainly expressed in the
brain, testis, colon and kidney. FATPs also have fatty
acid CoA synthetase activity, thus playing dual roles as
fatty acid transporters and its activation enzymes.
FATPs are the key players in the trafficking of
exogenous fatty acids into the cell and in intracellular
fatty acid homeostasis.
Length = 474
Score = 56.3 bits (136), Expect = 1e-09
Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 7/89 (7%)
Query: 82 EQISKSLNCRDGINIQ------FTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHK 135
Q S +D +N + +TSGTTG PKAA + H + D
Sbjct: 89 TQSSTEPPSQDDVNFRDKLFYIYTSGTTGLPKAAVIVHSRYYRIAAGAYYAFGMRPED-V 147
Query: 136 ILLQVPMFHTFGTAMGILNAMNHGSTTVV 164
+ +P++H+ G MG+ A+ HGST V+
Sbjct: 148 VYDCLPLYHSAGGIMGVGQALLHGSTVVI 176
>gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase
(FACL) similar to Fum10p of Gibberella moniliformis.
FACL catalyzes the formation of fatty acyl-CoA in a
two-step reaction: the formation of a fatty acyl-AMP
molecule as an intermediate, followed by the formation
of a fatty acyl-CoA. This is a required step before free
fatty acids can participate in most catabolic and
anabolic reactions. Fum10p is a fatty acid CoA ligase
involved in the synthesis of fumonisin, a polyketide
mycotoxin, in Gibberella moniliformis.
Length = 345
Score = 54.2 bits (131), Expect = 4e-09
Identities = 27/72 (37%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Query: 96 IQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQV-PMFHTFGTAMGILN 154
I TSGTTG PK LTH NL+ ++ I K + T L V P+FH G + +L
Sbjct: 7 ILHTSGTTGRPKGVPLTHKNLLASARNIAKSHKL--TPSDRCLNVMPLFHIHGLIVSLLA 64
Query: 155 AMNHGSTTVVPA 166
+ G + V P
Sbjct: 65 TLLAGGSVVCPP 76
>gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase;
Provisional.
Length = 1140
Score = 54.2 bits (131), Expect = 6e-09
Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 96 IQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNA 155
I FTSG+ G PK L+H NL+ N + R++F D K+ +P+FH+FG G++
Sbjct: 798 ILFTSGSEGTPKGVVLSHRNLLANRAQVAARIDFSPED-KVFNALPVFHSFGLTGGLVLP 856
Query: 156 MNHGSTTVV-PAP 167
+ G + P+P
Sbjct: 857 LLSGVKVFLYPSP 869
>gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated.
Length = 542
Score = 54.0 bits (130), Expect = 8e-09
Identities = 31/88 (35%), Positives = 42/88 (47%), Gaps = 2/88 (2%)
Query: 96 IQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNA 155
I +TSGTTG PK A LTH NL + + D + VP+FH G +L
Sbjct: 179 IMYTSGTTGRPKGAVLTHANLTGQAMTCLRTNGADINSDVGFVGVPLFHIAGIG-SMLPG 237
Query: 156 MNHGSTTVV-PAPSFKPMDSLRAIAKEK 182
+ G+ TV+ P +F P L + EK
Sbjct: 238 LLLGAPTVIYPLGAFDPGQLLDVLEAEK 265
>gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS) similar to mycosubtilin
synthase subunit A (MycA). The adenylation (A) domain
of NRPS recognizes a specific amino acid or hydroxy acid
and activates it as (amino)-acyl adenylate by hydrolysis
of ATP. The activated acyl moiety then forms thioester
to the enzyme-bound cofactor phosphopantetheine of a
peptidyl carrier protein domain. This family includes
NRPS similar to mycosubtilin synthase subunit A (MycA).
Mycosubtilin, which is characterized by a beta-amino
fatty acid moiety linked to the circular heptapeptide
Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin
family of lipopeptide antibiotics. The mycosubtilin
synthase subunit A (MycA) combines functional domains
derived from peptide synthetases, amino transferases,
and fatty acid synthases. Nonribosomal peptide
synthetases are large multifunction enzymes that
synthesize many therapeutically useful peptides. NRPS
has a distinct modular structure in which each module is
responsible for the recognition, activation, and, in
some cases, modification of a single amino acid residue
of the final peptide product. The modules can be
subdivided into domains that catalyze specific
biochemical reactions.
Length = 499
Score = 51.9 bits (125), Expect = 4e-08
Identities = 22/52 (42%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 96 IQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFG 147
IQF+SG+TG PK LTH NL+ N I + E D L +P+ H G
Sbjct: 111 IQFSSGSTGEPKGVILTHKNLLTNIEAIIEAAEITSED-VFLSWMPLTHDMG 161
>gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like.
Length = 560
Score = 51.8 bits (124), Expect = 4e-08
Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 13/120 (10%)
Query: 75 PEYHRRREQISKSLNC--------RDGINIQFTSGTTGHPKAAFLTHYNLINNSN----F 122
E+ + E I + + D I ++SGTTG K LTH NLI F
Sbjct: 174 IEFPKFYELIKEDFDFVPKPVIKQDDVAAIMYSSGTTGASKGVVLTHRNLIAMVELFVRF 233
Query: 123 IGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVPAPSFKPMDSLRAIAKEK 182
+ E+ +D+ L +PMFH +G ++ ++ ++ GST VV F D ++ I + K
Sbjct: 234 EASQYEYPGSDNVYLAALPMFHIYGLSLFVVGLLSLGSTIVV-MRRFDASDMVKVIDRFK 292
>gnl|CDD|236091 PRK07768, PRK07768, long-chain-fatty-acid--CoA ligase; Validated.
Length = 545
Score = 51.5 bits (124), Expect = 4e-08
Identities = 29/80 (36%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Query: 97 QFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAM 156
Q TSG+TG PKA +TH NL N+ + EFD ++ +P+FH G + M
Sbjct: 158 QLTSGSTGSPKAVQITHGNLYANAEAMFVAAEFDVETDVMVSWLPLFHDMGMVGFLTVPM 217
Query: 157 NHGSTTVVPAPSFKPMDSLR 176
G+ V PMD LR
Sbjct: 218 YFGAELV----KVTPMDFLR 233
>gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase.
2,3-dihydroxybenzoate-AMP ligase activates
2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP
with the release of pyrophosphate. However, it can also
catalyze the ATP-PPi exchange for 2,3-DHB analogs, such
as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB
and 2,5-DHB, but with less efficiency. Proteins in this
family are the stand-alone adenylation components of
non-ribosomal peptide synthases (NRPSs) involved in the
biosynthesis of siderophores, which are low molecular
weight iron-chelating compounds synthesized by many
bacteria to aid in the acquisition of this vital trace
elements. In Escherichia coli, the
2,3-dihydroxybenzoate-AMP ligase is called EntE, the
adenylation component of the enterobactin NRPS system.
Length = 483
Score = 51.4 bits (124), Expect = 5e-08
Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 3/88 (3%)
Query: 96 IQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAM-GILN 154
Q + GTTG PK TH + + ++ + D L +P H F + G+L
Sbjct: 144 FQLSGGTTGLPKLIPRTHNDYLYSARASAEACGLDPGT-VYLAVLPAAHNFTLSSPGLLG 202
Query: 155 AMNHGSTTVVPAPSFKPMDSLRAIAKEK 182
A+ G TVV P + I +EK
Sbjct: 203 ALLAGG-TVVLHHPPSPDVAFPLIEREK 229
>gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated.
Length = 549
Score = 51.1 bits (123), Expect = 6e-08
Identities = 36/93 (38%), Positives = 43/93 (46%), Gaps = 4/93 (4%)
Query: 91 RDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAM 150
GI I TSGTTG PK A + + + R+ F + LL PMFH G A
Sbjct: 208 PGGIVIL-TSGTTGTPKGAPRPEPSPLAPLAGLLSRVPF-RAGETTLLPAPMFHATGWAH 265
Query: 151 GILNAMNHGSTTVVPAPSFKPMDSLRAIAKEKC 183
L AM GST V+ F P +L IAK K
Sbjct: 266 LTL-AMALGSTVVLRR-RFDPEATLEDIAKHKA 296
>gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase.
The members of this family are putative long-chain fatty
acyl-CoA synthetases, which catalyze the ATP-dependent
activation of fatty acids in a two-step reaction. The
carboxylate substrate first reacts with ATP to form an
acyl-adenylate intermediate, which then reacts with CoA
to produce an acyl-CoA ester. Fatty acyl-CoA synthetases
are responsible for fatty acid degradation as well as
physiological regulation of cellular functions via the
production of fatty acyl-CoA esters.
Length = 430
Score = 50.8 bits (122), Expect = 9e-08
Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 4/89 (4%)
Query: 96 IQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQV-PMFHTFGTAMGILN 154
I +TSGTTG PK TH ++ + T +LL P+FH G +
Sbjct: 89 IPYTSGTTGLPKGCMHTHRTVLATA--AASAAWSGLTPDSVLLAFLPLFHVAGMQGSMNA 146
Query: 155 AMNHGSTTVVPAPSFKPMDSLRAIAKEKC 183
+ G+T V+ + + RAI + +
Sbjct: 147 PIYTGATLVLLT-RWDREAAARAIERYRV 174
>gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called
cyclohex-1-ene-1-carboxylate:CoA ligase).
Cyclohexanecarboxylate-CoA ligase activates the
aliphatic ring compound, cyclohexanecarboxylate, for
degradation. It catalyzes the synthesis of
cyclohexanecarboxylate-CoA thioesters in a two-step
reaction involving the formation of
cyclohexanecarboxylate-AMP anhydride, followed by the
nucleophilic substitution of AMP by CoA.
Length = 437
Score = 50.7 bits (122), Expect = 1e-07
Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 2/86 (2%)
Query: 98 FTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMN 157
+TSGTTG PK TH L+ +RL D +L+ P+ H G G+ +
Sbjct: 100 YTSGTTGEPKGVMHTHNTLLAEVRSYVERLGLTP-DDVVLMPSPLAHITGFLYGLELPLL 158
Query: 158 HGSTTVVPAPSFKPMDSLRAIAKEKC 183
G+T V+ + P +L I +
Sbjct: 159 LGATVVL-QDRWDPARALELIREHGV 183
>gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated.
Length = 496
Score = 50.6 bits (121), Expect = 1e-07
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 96 IQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKI-LLQVPMFHTFGTAMGILN 154
I +TSGTTG PK A LT N+ N+ + D T H ++ +P+FH G +
Sbjct: 154 ICYTSGTTGKPKGAVLTQENMFWNA--LNNTFAIDLTMHDRSIVLLPLFHIGGIGLFAFP 211
Query: 155 AMNHGSTTVVPAPSFKPMDSLRAIAKEK 182
+ G +VP F+P +L I K K
Sbjct: 212 TLFAGGVIIVPR-KFEPTKALSMIEKHK 238
>gnl|CDD|213304 cd05938, hsFATP2a_ACSVL_like, Fatty acid transport proteins (FATP)
including hsFATP2, hsFATP5, and hsFATP6, and similar
proteins. Fatty acid transport proteins (FATP) of this
family transport long-chain or very-long-chain fatty
acids across the plasma membrane. At least five copies
of FATPs are identified in mammalian cells. This family
includes hsFATP2, hsFATP5, and hsFATP6, and similar
proteins. Each FATP has unique patterns of tissue
distribution. These FATPs also have fatty acid CoA
synthetase activity, thus playing dual roles as fatty
acid transporters and its activation enzymes. The hsFATP
proteins exist in two splice variants; the b variant,
lacking exon 3, has no acyl-CoA synthetase activity.
FATPs are key players in the trafficking of exogenous
fatty acids into the cell and in intracellular fatty
acid homeostasis.
Length = 535
Score = 50.1 bits (120), Expect = 2e-07
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Query: 98 FTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMN 157
+TSGTTG PKAA ++H ++ S + L D + +P++H+ G +GI+ +
Sbjct: 149 YTSGTTGLPKAARISHLRVLQCSGMLS--LCGVTADDVVYTTLPLYHSSGALLGIVGCIG 206
Query: 158 HGSTTVVPAPSF 169
G+T V+ P F
Sbjct: 207 LGATLVL-KPKF 217
>gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual
roles as fatty acid transporters and its activation
enzymes. Fatty acid transport protein (FATP) transports
long-chain or very-long-chain fatty acids across the
plasma membrane. FATPs also have fatty acid CoA
synthetase activity, thus playing dual roles as fatty
acid transporters and its activation enzymes. At least
five copies of FATPs are identified in mammalian cells.
This family also includes prokaryotic FATPs. FATPs are
the key players in the trafficking of exogenous fatty
acids into the cell and in intracellular fatty acid
homeostasis.
Length = 444
Score = 49.9 bits (120), Expect = 2e-07
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 98 FTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMN 157
+TSGTTG PKAA ++H + G D + L +P++H+ +G +A+
Sbjct: 88 YTSGTTGLPKAAIMSHRRWLRAGAVFGGLGLLKPDD-VLYLCLPLYHSNALTVGWSSALA 146
Query: 158 HGSTTVV 164
G++ +
Sbjct: 147 AGASLAL 153
>gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase. This model
represents an enzyme, O-succinylbenzoate-CoA ligase,
which is involved in the fourth step of the menaquinone
biosynthesis pathway. O-succinylbenzoate-CoA ligase,
together with menB - naphtoate synthase, take
2-succinylbenzoate and convert it into 1,4-di-hydroxy-2-
naphtoate [Biosynthesis of cofactors, prosthetic groups,
and carriers, Menaquinone and ubiquinone].
Length = 436
Score = 49.4 bits (118), Expect = 3e-07
Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 2/91 (2%)
Query: 77 YHRRREQISKSLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKI 136
R +S S N + FTSGTTG PKA T N ++ + L F + D
Sbjct: 97 AGRYETSLSASFNMDQIATLMFTSGTTGKPKAVPHTFRNHYASAVGSKENLGFTEDD-NW 155
Query: 137 LLQVPMFHTFGTAMGILNAMNHGSTTVVPAP 167
LL +P++H G ++ + + G+T +
Sbjct: 156 LLSLPLYHISGLSI-LFRWLIEGATLRIVDK 185
>gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to
LC-FACS from Thermus thermophiles. This family includes
fatty acyl-CoA synthetases that can activate
medium-chain to long-chain fatty acids. They catalyze
the ATP-dependent acylation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. The fatty
acyl-CoA synthetases are responsible for fatty acid
degradation as well as physiological regulation of
cellular functions via the production of fatty acyl-CoA
esters. The fatty acyl-CoA synthetase from Thermus
thermophiles in this family was shown catalyzing the
long-chain fatty acid, myristoyl acid, while another
member in this family, the AlkK protein identified from
Pseudomonas oleovorans, targets medium chain fatty
acids. This family also includes uncharacterized FACS
proteins.
Length = 517
Score = 48.7 bits (117), Expect = 5e-07
Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 2/93 (2%)
Query: 91 RDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQ-VPMFHTFGTA 149
+ +TSGTTG+PK +H +L+ ++ ++ +L VPMFH
Sbjct: 162 NTAAGLCYTSGTTGNPKGVVYSHRSLVLHTLASALPDSLGLSESDTVLPVVPMFHVNAWG 221
Query: 150 MGILNAMNHGSTTVVPAPSFKPMDSLRAIAKEK 182
+ M G+ V+P P L I +EK
Sbjct: 222 LPYAATMV-GAKLVLPGRYLDPASLLDLIEEEK 253
>gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated.
Length = 488
Score = 48.6 bits (116), Expect = 5e-07
Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 6/86 (6%)
Query: 96 IQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHK--ILLQVPMFHTFGTAMGIL 153
I FTSGT+G PK L+ NL ++ G + D L PMFH G +
Sbjct: 140 ILFTSGTSGQPKGVMLSERNLQQTAHNFGV---LGRVDAHSSFLCDAPMFHIIGLITSVR 196
Query: 154 NAMNHGSTTVVPAPSFKPMDSLRAIA 179
+ G + +V + F+P +L +
Sbjct: 197 PVLAVGGSILV-SNGFEPKRTLGRLG 221
>gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain. This
model represents a domain responsible for the specific
recognition of amino acids and activation as adenylyl
amino acids. The reaction catalyzed is aa + ATP ->
aa-AMP + PPi. These domains are usually found as
components of multi-domain non-ribosomal peptide
synthetases and are usually called "A-domains" in that
context (for a review, see ). A-domains are almost
invariably followed by "T-domains" (thiolation domains,
pfam00550) to which the amino acid adenylate is
transferred as a thiol-ester to a bound pantetheine
cofactor with the release of AMP (these are also called
peptide carrier proteins, or PCPs. When the A-domain
does not represent the first module (corresponding to
the first amino acid in the product molecule) it is
usually preceded by a "C-domain" (condensation domain,
pfam00668) which catalyzes the ligation of two amino
acid thiol-esters from neighboring modules. This domain
is a subset of the AMP-binding domain found in Pfam
(pfam00501) which also hits substrate--CoA ligases and
luciferases. Sequences scoring in between trusted and
noise for this model may be ambiguous as to whether they
activate amino acids or other molecules lacking an alpha
amino group.
Length = 409
Score = 48.4 bits (116), Expect = 5e-07
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 8/74 (10%)
Query: 98 FTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFG---TAMGILN 154
+TSG+TG PK +TH +L+N ++ +R D D +V F + + I
Sbjct: 127 YTSGSTGRPKGVVVTHRSLVNLLAWLARRYGLDPDD-----RVLQFASLSFDASVEEIFG 181
Query: 155 AMNHGSTTVVPAPS 168
A+ G+T VVP
Sbjct: 182 ALLAGATLVVPPED 195
>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine
acyltransferase; Validated.
Length = 1146
Score = 48.8 bits (117), Expect = 5e-07
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 96 IQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFG 147
I F+SG+ G PK L+H+N+++N I D IL +P FH+FG
Sbjct: 787 IIFSSGSEGEPKGVMLSHHNILSNIEQISDVFNLRNDD-VILSSLPFFHSFG 837
>gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated.
Length = 632
Score = 48.4 bits (116), Expect = 6e-07
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Query: 99 TSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMNH 158
T GTTG PK A TH N + N+ ++G L + +P+FH + L +
Sbjct: 221 TGGTTGMPKLAQHTHGNEVANA-WLGALLLGLGPGDTVFCGLPLFHVNALLVTGLAPLAR 279
Query: 159 GSTTVVPAPS 168
G+ V+ P
Sbjct: 280 GAHVVLATPQ 289
>gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated.
Length = 546
Score = 47.3 bits (113), Expect = 1e-06
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 96 IQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQV-PMFHTFGTAMGILN 154
+ +TSGTTG PK TH + +N +G L + T ++L V P+FH G +
Sbjct: 195 LPYTSGTTGVPKGCMHTHRTV--MANAVGSVLWSNSTPESVVLAVLPLFHVTGMVHSMNA 252
Query: 155 AMNHGSTTVV 164
+ G+T V+
Sbjct: 253 PIYAGATVVL 262
>gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid
metabolism].
Length = 613
Score = 46.2 bits (110), Expect = 3e-06
Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Query: 96 IQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNA 155
I +TSGTTG PK LTH NL+ I + L ++L +P+ H F A
Sbjct: 196 IIYTSGTTGTPKGVMLTHRNLLAQVAGIDEVLPPIGPGDRVLSFLPLAHIFERAF-EGGL 254
Query: 156 MNHGSTTVVPAPSFK 170
+G TV+ +
Sbjct: 255 ALYGGVTVLFKEDPR 269
>gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated.
Length = 563
Score = 45.4 bits (107), Expect = 5e-06
Identities = 32/90 (35%), Positives = 50/90 (55%), Gaps = 6/90 (6%)
Query: 96 IQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFD-KTDHKILLQV-PMFHTFG-TAMGI 152
+Q+T GTTG PK LTH NL++N+ +G + ++ K +++L V P FH +G TA+
Sbjct: 211 LQYTGGTTGFPKGVMLTHKNLVSNT-LMGVQWLYNCKEGEEVVLGVLPFFHVYGMTAVMN 269
Query: 153 LNAMNHGSTTVVPAPSFKPMDSLRAIAKEK 182
L+ M ++P K + AI K K
Sbjct: 270 LSIMQGYKMVLIPKFDMKMV--FEAIKKHK 297
>gnl|CDD|213303 cd05937, FATP_chFAT1_like, Uncharacterized subfamily of
bifunctional fatty acid transporter/very-long-chain
acyl-CoA synthetase in fungi. Fatty acid transport
protein (FATP) transports long-chain or very-long-chain
fatty acids across the plasma membrane. FATPs also have
fatty acid CoA synthetase activity, thus playing dual
roles as fatty acid transporters and its activation
enzymes. FATPs are the key players in the trafficking of
exogenous fatty acids into the cell and in intracellular
fatty acid homeostasis. Members of this family are
fungal FATPs, including FAT1 from Cochliobolus
heterostrophus.
Length = 468
Score = 45.1 bits (107), Expect = 8e-06
Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Query: 98 FTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMN 157
+TSGTTG PK ++ + SN + L D + +P++H +G+ +
Sbjct: 94 YTSGTTGLPKGCAISWRRTLVTSNPLSHDLNLQFPD-RTYTCMPLYHGTAAFLGLCYCLG 152
Query: 158 HGSTTVV 164
G T +
Sbjct: 153 SGGTLCL 159
>gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA. PimA, a member of
a large family of acyl-CoA ligases, is found in a
characteristic operon pimFABCDE for the metabolism of
pimelate and related compounds. It is found, so far, in
Bradyrhizobium japonicum and several strains of
Rhodopseudomonas palustris. PimA from R. palustris was
shown to be active as a CoA ligase for C(7) to C(14)
dicarboxylates and fatty acids.
Length = 541
Score = 45.0 bits (106), Expect = 8e-06
Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 4/68 (5%)
Query: 96 IQFTSGTTGHPKAAFLTHYNL---INNSNFIGKRLEFDKTD-HKILLQVPMFHTFGTAMG 151
+Q+T GTTG PK A LTH NL ++ + GK + D +++ +P+FH + +
Sbjct: 197 LQYTGGTTGLPKGAMLTHGNLTSAVSIYDVWGKPSRATRGDVERVICVLPLFHIYALTVI 256
Query: 152 ILNAMNHG 159
+L ++ G
Sbjct: 257 LLRSLRRG 264
>gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA
synthetase (LC-FACS). The members of this family are
eukaryotic fatty acid CoA synthetases that activate
fatty acids with chain lengths of 12 to 20. LC-FACS
catalyzes the formation of fatty acyl-CoA in a two-step
reaction: the formation of a fatty acyl-AMP molecule as
an intermediate, and the formation of a fatty acyl-CoA.
This is a required step before free fatty acids can
participate in most catabolic and anabolic reactions.
Organisms tend to have multiple isoforms of LC-FACS
genes with multiple splice variants. For example, nine
genes are found in Arabidopsis and six genes are
expressed in mammalian cells.
Length = 539
Score = 44.8 bits (107), Expect = 9e-06
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 96 IQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLE--FDKTD 133
I +TSGTTG+PK LTH N++ I K + TD
Sbjct: 116 IMYTSGTTGNPKGVMLTHGNIVAGVAGINKIVPEFIGPTD 155
>gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase
A-associated. This group of proteins contains an
AMP-binding domain (pfam00501) associated with acyl
CoA-ligases. These proteins are generally found in
genomes containing the exosortase/PEP-CTERM protein
expoert system , specifically the type 1 variant of this
system described by the Genome Property GenProp0652.
When found in this context they are invariably present
next to a decarboxylase enzyme. A number of sequences
from Burkholderia species also hit this model, but the
genomic context is obviously different. The hypothesis
of a constant substrate for this family is only strong
where the exosortase context is present.
Length = 517
Score = 44.8 bits (106), Expect = 9e-06
Identities = 36/159 (22%), Positives = 53/159 (33%), Gaps = 29/159 (18%)
Query: 24 RTLSHQDKIRPGRESNPRPSAYKADALPTKLTRLALRMGTFRLSDIMQGAGPEYHRRREQ 83
RTL E +P L H
Sbjct: 122 RTLIIVGDPAHASEGHPGEEPASWPKLLALGDADPP------------------HPV--- 160
Query: 84 ISKSLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMF 143
I + I +TSG+TG PK L+H NL+ + + LE D ++L +P+
Sbjct: 161 IDSDMAA-----ILYTSGSTGRPKGVVLSHRNLVAGAQSVATYLENRPDD-RLLAVLPLS 214
Query: 144 HTFGTAMGILNAMNHGSTTVVPAPSFKPMDSLRAIAKEK 182
+G + A G+ TVV P D L+A+ K
Sbjct: 215 FDYGFNQ-LTTAFYVGA-TVVLHDYLLPRDVLKALEKHG 251
>gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated.
Length = 504
Score = 44.9 bits (107), Expect = 1e-05
Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 3/53 (5%)
Query: 96 IQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQ-VPMFHTFG 147
I +TSGTTG K A L+H NL++N+ + F D +L+ +P+FHT G
Sbjct: 161 ILYTSGTTGRSKGAMLSHGNLLSNALTLVDYWRFTPDD--VLIHALPIFHTHG 211
>gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases
[Lipid metabolism].
Length = 528
Score = 44.6 bits (106), Expect = 1e-05
Identities = 34/183 (18%), Positives = 59/183 (32%), Gaps = 35/183 (19%)
Query: 12 EDRIGESQPFRERTLSHQDKIRPGRESNPRPSAYKADALPTKLTRLALRMGTFRLSDIMQ 71
DRI + P + L D N + A DA + + + + ++
Sbjct: 105 ADRIADLGP---KVLIADDGTFR----NGKEIALLEDADAVLSSVVVVPRLGLWYDEAVE 157
Query: 72 GAGPEYHRRREQISKSLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDK 131
A ++ E + D + + +TSGTTG PK +H L +
Sbjct: 158 KASEKFEF--EPLPAD----DPLFLLYTSGTTGKPKGIVHSHGGY----------LVEHR 201
Query: 132 TDHKILLQ----------VPMFHTFGTAMGILNAMNHGSTTVV--PAPSFKPMDSLRAIA 179
K +G + + + G+TTV+ P + P A+
Sbjct: 202 LTAKFHGDLLPGDRFWNSSDPGWIYGLWYSVFSPLASGATTVLYDGRPFYSPERLWEALE 261
Query: 180 KEK 182
K K
Sbjct: 262 KYK 264
>gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed.
Length = 547
Score = 43.9 bits (104), Expect = 2e-05
Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 98 FTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMN 157
+TSGTTG PK T L+ N +RL D IL+ PM H G G++ +
Sbjct: 204 YTSGTTGEPKGVMHTANTLMANIVPYAERLGL-GADDVILMASPMAHQTGFMYGLMMPVM 262
Query: 158 HGSTTV 163
G+T V
Sbjct: 263 LGATAV 268
>gnl|CDD|178337 PLN02736, PLN02736, long-chain acyl-CoA synthetase.
Length = 651
Score = 43.9 bits (104), Expect = 2e-05
Identities = 16/24 (66%), Positives = 17/24 (70%)
Query: 96 IQFTSGTTGHPKAAFLTHYNLINN 119
I +TSGTTG PK LTH NLI N
Sbjct: 226 ICYTSGTTGTPKGVVLTHGNLIAN 249
>gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase;
Provisional.
Length = 560
Score = 43.3 bits (102), Expect = 3e-05
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 5/63 (7%)
Query: 96 IQFTSGTTGHPKAAFLTHYNLINN----SNFIGKRLEFDKTDHKILLQVPMFHTFG-TAM 150
+Q+T GTTG K A LTH NL+ N ++ + ++ ++ +P++H F TA
Sbjct: 213 LQYTGGTTGVAKGAMLTHRNLVANMQQAHQWLAGTGKLEEGCEVVITALPLYHIFALTAN 272
Query: 151 GIL 153
G++
Sbjct: 273 GLV 275
>gnl|CDD|213288 cd05921, FCS, Feruloyl-CoA synthetase (FCS). Feruloyl-CoA
synthetase is an essential enzyme in the feruloyl acid
degradation pathway and enables some proteobacteria to
grow on media containing feruloyl acid as the sole
carbon source. It catalyzes the transfer of CoA to the
carboxyl group of ferulic acid, which then forms
feruloyl-CoA in the presence of ATP and Mg2. The
resulting feruloyl-CoA is further degraded to vanillin
and acetyl-CoA. Feruloyl-CoA synthetase (FCS) is a
subfamily of the adenylate-forming enzymes superfamily.
Length = 559
Score = 43.4 bits (103), Expect = 3e-05
Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 98 FTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQ-VPMFHTFGTAMGILNAM 156
FTSG+TG PKA TH L N I + F + +L+ +P HTFG +
Sbjct: 171 FTSGSTGLPKAVINTHRMLCANQAMIAQCWPFLTEEPPVLVDWLPWNHTFGGNHNFNMVL 230
Query: 157 NHGST 161
+G T
Sbjct: 231 YNGGT 235
>gnl|CDD|236175 PRK08180, PRK08180, feruloyl-CoA synthase; Reviewed.
Length = 614
Score = 42.6 bits (101), Expect = 5e-05
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 98 FTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQ-VPMFHTFGTAMGILNAM 156
FTSG+TG PKA TH L N + + F + +L+ +P HTFG + +
Sbjct: 216 FTSGSTGLPKAVINTHRMLCANQQMLAQTFPFLAEEPPVLVDWLPWNHTFGGNHNLGIVL 275
Query: 157 NHGST 161
+G T
Sbjct: 276 YNGGT 280
>gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated.
Length = 528
Score = 42.7 bits (101), Expect = 5e-05
Identities = 30/90 (33%), Positives = 42/90 (46%), Gaps = 10/90 (11%)
Query: 98 FTSGTTGHPKAAFLTHYNL---INNSNFIGKRLEFDKTDHKILLQV-PMFHTFGTAMGIL 153
FTSGTTG PKAA LTH + I N L T+ L V P+ H G + L
Sbjct: 170 FTSGTTGRPKAAVLTHGQMAFVITNHL---ADLMPGTTEQDASLVVAPLSH--GAGIHQL 224
Query: 154 NAMNHGSTTVV-PAPSFKPMDSLRAIAKEK 182
+ G+ TV+ P+ F P + + + +
Sbjct: 225 CQVARGAATVLLPSERFDPAEVWALVERHR 254
>gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 359
Score = 42.3 bits (100), Expect = 5e-05
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 99 TSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMNH 158
T GTTG PK A +H N + N+ +L +P+FH G + L +
Sbjct: 10 TGGTTGAPKLARHSHRNEVANAWMAALLSGL-GPGDVLLNGLPLFHVGGAIVTGLAPLAR 68
Query: 159 GSTTVVPAPS 168
G+T V+P PS
Sbjct: 69 GATVVLPTPS 78
>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional.
Length = 3956
Score = 42.8 bits (101), Expect = 5e-05
Identities = 20/90 (22%), Positives = 37/90 (41%), Gaps = 10/90 (11%)
Query: 98 FTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTF---GTAMGILN 154
+TSG+TG PK A H L+N + + D V F +F + +
Sbjct: 1725 YTSGSTGRPKGAGNRHGALVNRLCATQEAYQLSAAD-----VVLQFTSFAFDVSVWELFW 1779
Query: 155 AMNHGSTTVVPAP--SFKPMDSLRAIAKEK 182
+ +G+ V+ P P ++ I +++
Sbjct: 1780 PLINGARLVIAPPGAHRDPEQLIQLIERQQ 1809
Score = 39.4 bits (92), Expect = 7e-04
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 8/73 (10%)
Query: 98 FTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMG---ILN 154
+TSG+TG PK ++H L N I +RL+ D + M TF +G +
Sbjct: 663 YTSGSTGQPKGVAISHGALANYVCVIAERLQLAADD-----SMLMVSTFAFDLGVTELFG 717
Query: 155 AMNHGSTTVVPAP 167
A+ G+T + P
Sbjct: 718 ALASGATLHLLPP 730
Score = 30.1 bits (68), Expect = 0.86
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 98 FTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILL 138
+TSG+TG PK + H L N+ +I + E D D +L
Sbjct: 3244 YTSGSTGKPKGVGVRHGALANHLCWIAEAYELDANDRVLLF 3284
>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated.
Length = 4334
Score = 42.8 bits (101), Expect = 5e-05
Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 4/89 (4%)
Query: 96 IQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKT-DHKILLQVPMFHTFGTAMGILN 154
+Q+TSG+T PK ++H NL+ N I D D I+ +P++H G G+L
Sbjct: 171 LQYTSGSTALPKGVQVSHGNLVANEQLIRHGFGIDLNPDDVIVSWLPLYHDMGLIGGLLQ 230
Query: 155 AMNHGSTTVVPAPSF---KPMDSLRAIAK 180
+ G V+ +P++ +P+ L AI++
Sbjct: 231 PIFSGVPCVLMSPAYFLERPLRWLEAISE 259
Score = 27.1 bits (60), Expect = 7.1
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 98 FTSGTTGHPKAAFLTHYNLINN 119
+TSG+TG PK + ++NN
Sbjct: 3876 YTSGSTGLPKGVMVEQRGMLNN 3897
>gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL). ABCL catalyzes
the initial step in the 2-aminobenzoate aerobic
degradation pathway by activating 2-aminobenzoate to
2-aminobenzoyl-CoA. The reaction is carried out via a
two-step process; the first step is ATP-dependent and
forms a 2-aminobenzoyl-AMP intermediate, and the second
step forms the 2-aminobenzoyl-CoA ester and releases the
AMP. 2-Aminobenzoyl-CoA is further converted to
2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by
2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has
been purified from cells aerobically grown with
2-aminobenzoate as sole carbon, energy, and nitrogen
source, and has been characterized as a monomer.
Length = 487
Score = 42.1 bits (99), Expect = 7e-05
Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
Query: 96 IQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNA 155
I FTSGTTG PK H +++ + + + D + P+ TFG +L
Sbjct: 152 IGFTSGTTGLPKGTMHFHRDILAICDAFPRHVLQPTPDDVFIGSPPLAFTFGLGGLVLFP 211
Query: 156 MNHGSTTV-VPAPSFKPMDSLRAIAKEK 182
+ G++ V + + P L+AI + +
Sbjct: 212 LRFGASAVLLEQAT--PPLLLKAIQEHR 237
>gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as
O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or
MenE). O-succinylbenzoic acid-CoA synthase catalyzes
the coenzyme A (CoA)- and ATP-dependent conversion of
o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The
reaction is the fourth step of the biosynthesis pathway
of menaquinone (vitamin K2). In certain bacteria,
menaquinone is used during fumarate reduction in
anaerobic respiration. In cyanobacteria, the product of
the menaquinone pathway is phylloquinone
(2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used
exclusively as an electron transfer cofactor in
Photosystem 1. In green sulfur bacteria and
heliobacteria, menaquinones are used as loosely bound
secondary electron acceptors in the photosynthetic
reaction center.
Length = 407
Score = 41.8 bits (99), Expect = 8e-05
Identities = 26/95 (27%), Positives = 36/95 (37%), Gaps = 15/95 (15%)
Query: 95 NIQFTSGTTGHPKAAFLTHYNLINN---SNFIGKRLEFDKTDHKILLQVPMFHTFGTAM- 150
I FTSG+TG PKA T N + + S L D+ LL +P+FH G A+
Sbjct: 81 TIIFTSGSTGKPKAVVHTWGNHLASARGSAE---NLGLTPDDNW-LLSLPLFHVSGLAIV 136
Query: 151 --GILNAMNHGSTTVVPAPSFKPMDSLRAIAKEKC 183
+L +V F A+
Sbjct: 137 MRSLLAGG-----ALVLPDKFDAEAIAEALENHGV 166
>gnl|CDD|213291 cd05924, FACL_like_5, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 365
Score = 41.9 bits (99), Expect = 8e-05
Identities = 23/108 (21%), Positives = 38/108 (35%), Gaps = 17/108 (15%)
Query: 90 CRDGINIQFTSGTTGHPKAAFLTHYNLINNSN-------------FIGKRLEFDKTDHKI 136
D + + +T GTTG PK ++ + K++ +
Sbjct: 2 SADDLYMLYTGGTTGMPKGVMWRQEDIFRVLLGGPDFATGEPTLEELAKQVAAGGAGTRF 61
Query: 137 LLQVPMFHTFGTAM-GILNAMNHGSTTVV-PAPSFKPMDSLRAIAKEK 182
L P+ H G L+A+ G T V+ P F P R + K +
Sbjct: 62 LPACPLMH--GAGQWLALSALFAGGTVVLLPDDKFDPDRVWRTVEKHR 107
>gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate
forming enzymes. This family contains benzoate CoA
ligase (BCL) and related ligases that catalyze the
acylation of benzoate derivatives, 2-aminobenzoate and
4-hydroxybenzoate. Aromatic compounds represent the
second most abundant class of organic carbon compounds
after carbohydrates. Xenobiotic aromatic compounds are
also a major class of man-made pollutants. Some bacteria
use benzoate as the sole source of carbon and energy
through benzoate degradation. Benzoate degradation
starts with its activation to benzoyl-CoA by benzoate
CoA ligase. The reaction catalyzed by benzoate CoA
ligase proceeds via a two-step process; the first
ATP-dependent step forms an acyl-AMP intermediate, and
the second step forms the acyl-CoA ester with release of
the AMP.
Length = 436
Score = 41.6 bits (98), Expect = 9e-05
Identities = 16/69 (23%), Positives = 30/69 (43%)
Query: 96 IQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNA 155
+TSGTTG PK H + + + + L + +I +F +G +L
Sbjct: 96 WLYTSGTTGKPKGVMHRHRDPLTFAEAFARELLGLQPGDRIFSSSKLFFAYGLGNSLLFP 155
Query: 156 MNHGSTTVV 164
+ G++ V+
Sbjct: 156 LFSGASAVL 164
>gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and
4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase).
Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A
ligase catalyze the first activating step for benzoate
and 4-hydroxybenzoate catabolic pathways, respectively.
Although these two enzymes share very high sequence
homology, they have their own substrate preference. The
reaction proceeds via a two-step process; the first
ATP-dependent step forms the substrate-AMP intermediate,
while the second step forms the acyl-CoA ester,
releasing the AMP. Aromatic compounds represent the
second most abundant class of organic carbon compounds
after carbohydrates. Some bacteria can use benzoic acid
or benzenoid compounds as the sole source of carbon and
energy through degradation. Benzoate CoA ligase and
4-hydroxybenzoate-Coenzyme A ligase are key enzymes of
this process.
Length = 506
Score = 41.9 bits (99), Expect = 1e-04
Identities = 19/87 (21%), Positives = 39/87 (44%), Gaps = 2/87 (2%)
Query: 97 QFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVP-MFHTFGTAMGILNA 155
++SG+TG PK H++++ + K + T+ ++ +F +G G+
Sbjct: 167 LYSSGSTGRPKGVVHLHHDMLVTAEAYAKNV-LGITEDDVVFSAAKLFFAYGLGNGLYFP 225
Query: 156 MNHGSTTVVPAPSFKPMDSLRAIAKEK 182
++ G+TTV+ P I + K
Sbjct: 226 LSVGATTVLMPERPTPDAVFATIERYK 252
>gnl|CDD|181207 PRK08043, PRK08043, bifunctional acyl-[acyl carrier protein]
synthetase/2-acylglycerophosphoethanolamine
acyltransferase; Validated.
Length = 718
Score = 41.6 bits (98), Expect = 1e-04
Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 96 IQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNA 155
I FTSG+ GHPK +H +L+ N I +F D + + +P+FH+FG +G+
Sbjct: 370 ILFTSGSEGHPKGVVHSHKSLLANVEQIKTIADFTPND-RFMSALPLFHSFGLTVGLFTP 428
Query: 156 MNHGS 160
+ G+
Sbjct: 429 LLTGA 433
>gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase.
Length = 537
Score = 41.1 bits (97), Expect = 1e-04
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 15/76 (19%)
Query: 98 FTSGTTGHPKAAFLTHYNLI---------NNSNFIGKRLEFDKTDHKILLQVPMFHTFGT 148
++SGTTG PK LTH L+ N N + +D IL +PMFH +
Sbjct: 186 YSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNL------YFHSDDVILCVLPMFHIYSL 239
Query: 149 AMGILNAMNHGSTTVV 164
+L + G+ ++
Sbjct: 240 NSVLLCGLRVGAAILI 255
>gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated.
Length = 560
Score = 41.2 bits (97), Expect = 1e-04
Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 14/93 (15%)
Query: 79 RRREQISKSLNCRDGINIQFTSGTTGHPKAAFLTHYNLINN--------SNFIGKRLEFD 130
RR + + L D +Q+T GTTG K A LTH N++ N + E
Sbjct: 194 RRMQYVKPELVPEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQAKAAYGPLLHPGKEL- 252
Query: 131 KTDHKILLQVPMFHTFGTAMGILNAMNHGSTTV 163
++ +P++H F + L + G +
Sbjct: 253 -----VVTALPLYHIFALTVNCLLFIELGGQNL 280
>gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA
synthetase (VL-FACS). This family of very long-chain
fatty acid CoA synthetase is named bubblegum because
Drosophila melanogaster mutant bubblegum (BGM) has
elevated levels of very-long-chain fatty acids (VLCFA)
caused by a defective gene of this family. The human
homolog (hsBG) has been characterized as a very long
chain fatty acid CoA synthetase that functions
specifically in the brain; hsBG may play a central role
in brain VLCFA metabolism and myelinogenesis. VL-FACS is
involved in the first reaction step of very long chain
fatty acid degradation. It catalyzes the formation of
fatty acyl-CoA in a two-step reaction: the formation of
a fatty acyl-AMP molecule as an intermediate, and the
formation of a fatty acyl-CoA. Free fatty acids must be
"activated" to their CoA thioesters before participating
in most catabolic and anabolic reactions.
Length = 594
Score = 41.2 bits (97), Expect = 2e-04
Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Query: 98 FTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQ-VPMFHTFGTAMGILNAM 156
+TSGTTG PK L+H N+ + K ++ + ++ +P+ H + I +
Sbjct: 157 YTSGTTGMPKGVMLSHDNITWTAKAAVKHMDLRTVGQESVVSYLPLSHIAAQILDIWLPI 216
Query: 157 NHGSTTVVPAP 167
+ G P
Sbjct: 217 SVGGCVYFAQP 227
>gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar
to LC-FACS from Thermus thermophiles and Arabidopsis.
This family includes fatty acyl-CoA synthetases that can
activate medium to long-chain fatty acids. These enzymes
catalyze the ATP-dependent acylation of fatty acids in a
two-step reaction. The carboxylate substrate first
reacts with ATP to form an acyl-adenylate intermediate,
which then reacts with CoA to produce an acyl-CoA ester.
Fatty acyl-CoA synthetases are responsible for fatty
acid degradation as well as physiological regulation of
cellular functions via the production of fatty acyl-CoA
esters. The fatty acyl-CoA synthetase from Thermus
thermophiles in this family has been shown to catalyze
the long-chain fatty acid, myristoyl acid. Also included
in this family are acyl activating enzymes from
Arabidopsis, which contains a large number of proteins
from this family with up to 63 different genes, many of
which are uncharacterized.
Length = 520
Score = 40.7 bits (96), Expect = 2e-04
Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Query: 92 DGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILL-QVPMFH 144
D I++ +TSGTTG+PK TH N+ +G +E+ D + L +PMFH
Sbjct: 168 DPISLNYTSGTTGNPKGVVYTHRGAYLNA--LGNVIEWGMPDRPVYLWTLPMFH 219
>gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide
synthetases (NRPS). The adenylation (A) domain of NRPS
recognizes a specific amino acid or hydroxy acid and
activates it as an (amino) acyl adenylate by hydrolysis
of ATP. The activated acyl moiety then forms a thioester
bond to the enzyme-bound cofactor phosphopantetheine of
a peptidyl carrier protein domain. NRPSs are large
multifunctional enzymes which synthesize many
therapeutically useful peptides in bacteria and fungi
via a template-directed, nucleic acid independent
nonribosomal mechanism. These natural products include
antibiotics, immunosuppressants, plant and animal
toxins, and enzyme inhibitors. NRPS has a distinct
modular structure in which each module is responsible
for the recognition, activation, and in some cases,
modification of a single amino acid residue of the final
peptide product. The modules can be subdivided into
domains that catalyze specific biochemical reactions.
Length = 445
Score = 40.5 bits (96), Expect = 2e-04
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 8/73 (10%)
Query: 98 FTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFG---TAMGILN 154
+TSG+TG PK + H L+N ++ +R D +V F +F + I
Sbjct: 100 YTSGSTGRPKGVMVEHRGLVNLLAWLQERYGLTAGD-----RVLQFASFSFDASVWEIFP 154
Query: 155 AMNHGSTTVVPAP 167
+ G+T V+ P
Sbjct: 155 PLLSGATLVLAPP 167
>gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated.
Length = 529
Score = 40.4 bits (95), Expect = 3e-04
Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 98 FTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMN 157
FTSGT+G PKA TH + + + +R D + +P+FH+ G A+
Sbjct: 159 FTSGTSGDPKAVRCTHRKVASAGVMLAQRFGLGPDD-VCYVSMPLFHSNAVMAGWAVALA 217
Query: 158 HGSTTVVPA 166
G++ +
Sbjct: 218 AGASIALRR 226
>gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA).
DltA belongs to the class I AMP-forming adenylation
domain superfamily, which also includes acetyl-CoA
synthetase, luciferase, and the adenylation domains of
non-ribosomal synthetases. It catalyzes the two-step
activation reaction of D-alanine: the formation of a
substrate-AMP molecule as an intermediate, and then the
transfer of the amino acid adenylate to teichoic acid in
the biosynthesis of lipoteichoic acid (LTA) and wall
teichoic acid (WTA) in gram-positive bacteria.
Length = 447
Score = 39.9 bits (94), Expect = 4e-04
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Query: 96 IQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLE-FDKTDHKILLQVPMFHTFGTAMGILN 154
I FTSG+TG PK ++H NL +F+ +E FD T+ + F + +
Sbjct: 102 ILFTSGSTGKPKGVQISHANLA---SFLDWMVEDFDLTEGDVFSNQAPFSFDLSVFDLFP 158
Query: 155 AMNHGSTTVVPAP 167
A+ G+T V
Sbjct: 159 ALASGATLYVIPK 171
>gnl|CDD|213278 cd05910, FACL_like_1, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 455
Score = 39.7 bits (93), Expect = 4e-04
Identities = 31/107 (28%), Positives = 42/107 (39%), Gaps = 15/107 (14%)
Query: 60 RMGTFRLSDIMQGAGPEYHRRREQISKSLNCRDGINIQFTSGTTGHPKAAFLTHYNLINN 119
MG L ++ A P+ I D I FTSG+TG PK TH
Sbjct: 60 GMGRKHLGRCLEEAEPDAF-----IGIPK-ADDPAAILFTSGSTGPPKGVVYTHRTFAAQ 113
Query: 120 SNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVPA 166
+ + + D + L P F FG A+G+ TTV+PA
Sbjct: 114 IDALRSLYGIREGD-RDLAAFPPFALFGPALGV--------TTVIPA 151
>gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related
proteins [Secondary metabolites biosynthesis, transport,
and catabolism].
Length = 642
Score = 39.6 bits (92), Expect = 5e-04
Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
Query: 96 IQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNA 155
I +TSG+TG PK + H L N N G R D D +L + + I A
Sbjct: 371 IIYTSGSTGQPKGVRIEHRALANLLNDAGARFGLDADD--RVLALASLSFDASVFEIFGA 428
Query: 156 MNHGSTTVVPAP 167
+ G+ V+
Sbjct: 429 LLEGARLVLAPA 440
>gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase.
Members of this protein family are
cyclohexanecarboxylate-CoA ligase. This enzyme prepares
the aliphatic ring compound, cyclohexanecarboxylate, for
dehydrogenation and then degradation by a pathway also
used in benzoyl-CoA degradation in Rhodopseudomonas
palustris.
Length = 538
Score = 39.1 bits (91), Expect = 7e-04
Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 98 FTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMN 157
+TSGTTG PK T L +N + +RLE D IL+ PM H G G++ +
Sbjct: 202 YTSGTTGEPKGVMHTANTLFSNIHPYAERLELGGGD-VILMASPMAHQTGFMYGLMMPLI 260
Query: 158 HGSTTVV 164
+T V+
Sbjct: 261 LNATAVL 267
>gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase;
Validated.
Length = 517
Score = 39.3 bits (92), Expect = 7e-04
Identities = 16/29 (55%), Positives = 18/29 (62%)
Query: 88 LNCRDGINIQFTSGTTGHPKAAFLTHYNL 116
L+ D I FTSGTT PK +THYNL
Sbjct: 170 LSTDDTAEILFTSGTTSRPKGVVITHYNL 198
>gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL). CBAL catalyzes
the conversion of 4-chlorobenzoate (4-CB) to
4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step
adenylation and thioester-forming reactions.
4-Chlorobenzoate (4-CBA) is an environmental pollutant
derived from microbial breakdown of aromatic pollutants,
such as polychlorinated biphenyls (PCBs), DDT, and
certain herbicides. The 4-CBA degrading pathway converts
4-CBA to the metabolite 4-hydroxybezoate (4-HBA),
allowing some soil-dwelling microbes to utilize 4-CBA as
an alternate carbon source. This pathway consists of
three chemical steps catalyzed by 4-CBA-CoA ligase,
4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in
sequential reactions.
Length = 495
Score = 39.1 bits (91), Expect = 8e-04
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Query: 98 FTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQV-PMFHTFGTAMGILNAM 156
+TSGTTG PK A + + F+ + H ++L + P++H G ++ A+
Sbjct: 159 YTSGTTGLPKGAVIPQRAAESRVLFMSTQAGLRHGRHNVVLGLMPLYHVIGFFAVLVAAL 218
Query: 157 NHGSTTVVPAPSFKPMDSLRAIAKEK 182
T V F P D+L+ I +E+
Sbjct: 219 ALDG-TYVVVEEFDPADALKLIEQER 243
>gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated.
Length = 600
Score = 38.7 bits (91), Expect = 0.001
Identities = 11/17 (64%), Positives = 14/17 (82%)
Query: 98 FTSGTTGHPKAAFLTHY 114
+TSGTTG PKAA ++H
Sbjct: 206 YTSGTTGLPKAAVMSHM 222
>gnl|CDD|237374 PRK13388, PRK13388, acyl-CoA synthetase; Provisional.
Length = 540
Score = 38.9 bits (91), Expect = 0.001
Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 7/72 (9%)
Query: 98 FTSGTTGHPKAAFLTHYNLINNSNFIGKRL--EFDKTDHKI-LLQVPMFHTFGTAMGILN 154
FTSGTTG PKA +H L F G+ L F T + + +P+FH+ G
Sbjct: 157 FTSGTTGAPKAVRCSHGRLA----FAGRALTERFGLTRDDVCYVSMPLFHSNAVMAGWAP 212
Query: 155 AMNHGSTTVVPA 166
A+ G+ +PA
Sbjct: 213 AVASGAAVALPA 224
>gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated.
Length = 523
Score = 38.8 bits (91), Expect = 0.001
Identities = 30/100 (30%), Positives = 41/100 (41%), Gaps = 20/100 (20%)
Query: 92 DGINIQFTSGTTGHPKAAFLTHYNLINN--SNFIGKRLEFDKTDHKILLQVPMFHT---- 145
D I +TSGT PK A LTH LI S + + D L +P++H
Sbjct: 172 DLAQILYTSGTESLPKGAMLTHRALIAEYVSCIVA--GDMSADD-IPLHALPLYHCAQLD 228
Query: 146 --FGTAMGILNAMNHGSTTV-VPAPSFKPMDSLRAIAKEK 182
G + + G+T V + AP P LR I E+
Sbjct: 229 VFLGPYLYV------GATNVILDAPD--PELILRTIEAER 260
>gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of
siderophore-synthesizing nonribosomal peptide
synthetases (NRPS). The adenylation (A) domain of NRPS
recognizes a specific amino acid or hydroxy acid and
activates it as an (amino) acyl adenylate by hydrolysis
of ATP. The activated acyl moiety then forms a thioester
to the enzyme-bound cofactor phosphopantetheine of a
peptidyl carrier protein domain. This family of
siderophore-synthesizing NRPS includes the third
adenylation domain of SidN from the endophytic fungus
Neotyphodium lolii, ferrichrome siderophore synthetase,
HC-toxin synthetase, and enniatin synthase. NRPSs are
large multifunctional enzymes which synthesize many
therapeutically useful peptides. These natural products
include antibiotics, immunosuppressants, plant and
animal toxins, and enzyme inhibitors. NRPS has a
distinct modular structure in which each module is
responsible for the recognition, activation, and in some
cases, modification of a single amino acid residue of
the final peptide product. The modules can be subdivided
into domains that catalyze specific biochemical
reactions.
Length = 447
Score = 38.4 bits (90), Expect = 0.001
Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 10/89 (11%)
Query: 98 FTSGTTGHPKAAFLTHYNLINNSNFI---GKRLEFDKTDHKILLQVPMFHTFGTAMG-IL 153
+TSG+TG PK +TH N+ NF+ G L D +LQ F ++ I
Sbjct: 106 YTSGSTGKPKGVVITHRNI---CNFLRAEGAILGIRPGD--RVLQF-ASIAFDVSILEIF 159
Query: 154 NAMNHGSTTVVPAPSFKPMDSLRAIAKEK 182
+ G T V+P + D + + +
Sbjct: 160 TTLLAGGTLVIPPEELRLEDLAEFLNRLR 188
>gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated.
Length = 562
Score = 38.2 bits (89), Expect = 0.001
Identities = 14/24 (58%), Positives = 17/24 (70%)
Query: 96 IQFTSGTTGHPKAAFLTHYNLINN 119
+Q+T GTTG K A LTH NL+ N
Sbjct: 212 LQYTGGTTGVAKGAMLTHRNLVAN 235
>gnl|CDD|180533 PRK06334, PRK06334, long chain fatty acid--[acyl-carrier-protein]
ligase; Validated.
Length = 539
Score = 37.9 bits (88), Expect = 0.002
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 96 IQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQ-VPMFHTFG 147
I FTSGT PK LTH NL+ N K F + +++ +P FH +G
Sbjct: 188 ILFTSGTEKLPKGVPLTHANLLANQRACLKF--FSPKEDDVMMSFLPPFHAYG 238
>gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a
family of nonribosomal peptide synthetases (NRPSs)
synthesizing toxins and antitumor agents. The
adenylation (A) domain of NRPS recognizes a specific
amino acid or hydroxy acid and activates it as an
(amino)-acyl adenylate by hydrolysis of ATP. The
activated acyl moiety then forms a thioester to the
enzyme-bound cofactor phosphopantetheine of a peptidyl
carrier protein domain. This family includes NRPSs that
synthesize toxins and antitumor agents; for example,
TubE for Tubulysine, CrpA for cryptophycin, TdiA for
terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for
Valinomycin. Nonribosomal peptide synthetases are large
multifunctional enzymes which synthesize many
therapeutically useful peptides. NRPS has a distinct
modular structure in which each module is responsible
for the recognition, activation, and, in some cases,
modification of a single amino acid residue of the final
peptide product. The modules can be subdivided into
domains that catalyze specific biochemical reactions.
Length = 560
Score = 38.0 bits (89), Expect = 0.002
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 96 IQFTSGTTGHPKAAFLTHYNLINNSNFIGK 125
+ TSG+TG PK LTH N++ + G
Sbjct: 172 LLLTSGSTGVPKCVVLTHRNIL--ARSAGT 199
>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional.
Length = 5163
Score = 37.6 bits (87), Expect = 0.003
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Query: 98 FTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMN 157
+TSG+TG PK ++H +L+N+ + G+R E D +LQ F G+ G+ + +
Sbjct: 4701 YTSGSTGRPKGVAVSHGSLVNHLHATGERYELTPDDR--VLQFMSFSFDGSHEGLYHPLI 4758
Query: 158 HGSTTVVPAPSFKPMDSLRA 177
+G++ V+ S + L A
Sbjct: 4759 NGASVVIRDDSLWDPERLYA 4778
Score = 34.9 bits (80), Expect = 0.023
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 98 FTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTD 133
+TSG+TG PK ++H L+ + G+R E D
Sbjct: 2153 YTSGSTGLPKGVAVSHGALVAHCQAAGERYELSPAD 2188
Score = 31.5 bits (71), Expect = 0.31
Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Query: 98 FTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMF 143
+TSG+TG PK A H L N ++ + +LQ F
Sbjct: 662 YTSGSTGKPKGAGNRHRALSNRLCWMQQAYGLG--VGDTVLQKTPF 705
Score = 29.2 bits (65), Expect = 1.7
Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 2/70 (2%)
Query: 98 FTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMN 157
+TSG+TG PK + H L N+ ++ + D +LQ F + +
Sbjct: 3203 YTSGSTGKPKGVGIRHSALSNHLCWMQQAYGLGVGDR--VLQFTTFSFDVFVEELFWPLM 3260
Query: 158 HGSTTVVPAP 167
G+ V+ P
Sbjct: 3261 SGARVVLAGP 3270
>gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated.
Length = 545
Score = 37.2 bits (87), Expect = 0.003
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 92 DGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILL-QVPMFH 144
D I + +TSGTTG+PK H N+ + L + H + L +PMFH
Sbjct: 183 DAIALNYTSGTTGNPKGVVYHHRGAYLNA--LSNILAWGMPKHPVYLWTLPMFH 234
>gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated.
Length = 534
Score = 36.8 bits (85), Expect = 0.004
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Query: 96 IQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNA 155
I FT GTTG PK TH N+ ++ I D + + +P++H G +L
Sbjct: 181 IMFTGGTTGLPKMVPWTHANIASSVRAIITGYRLSPRDATVAV-MPLYHGHGLIAALLAT 239
Query: 156 MNHGSTTVVPA 166
+ G ++PA
Sbjct: 240 LASGGAVLLPA 250
>gnl|CDD|236443 PRK09274, PRK09274, peptide synthase; Provisional.
Length = 552
Score = 36.8 bits (86), Expect = 0.005
Identities = 30/105 (28%), Positives = 41/105 (39%), Gaps = 37/105 (35%)
Query: 96 IQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKI------LLQVPMFHTFGTA 149
I FTSG+TG PK TH F + +E + D+ I L P+F FG A
Sbjct: 179 ILFTSGSTGTPKGVVYTH------GMFEAQ-IEALREDYGIEPGEIDLPTFPLFALFGPA 231
Query: 150 MGILNAMNHGSTTVVPAPSFKPMDSLR-----------AIAKEKC 183
+G+ T+V+P MD R AI +
Sbjct: 232 LGM--------TSVIP-----DMDPTRPATVDPAKLFAAIERYGV 263
>gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated.
Length = 557
Score = 36.5 bits (85), Expect = 0.005
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 7/79 (8%)
Query: 96 IQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLE--FDKTDH----KILLQVPMFHTFGTA 149
+Q+T GTTG K A L H N++ N + L+ F+K + +P++H F
Sbjct: 209 LQYTGGTTGVSKGATLLHRNIVANVLQMEAWLQPAFEKKPRPDQLNFVCALPLYHIFALT 268
Query: 150 MGILNAMNHGSTTV-VPAP 167
+ L M G + +P P
Sbjct: 269 VCGLLGMRTGGRNILIPNP 287
>gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated.
Length = 533
Score = 36.4 bits (85), Expect = 0.006
Identities = 24/108 (22%), Positives = 39/108 (36%), Gaps = 20/108 (18%)
Query: 92 DGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRL---EFDKTDHKILLQV-------- 140
D + + +T GTTG PK + I G+ E + + ++ +
Sbjct: 164 DDLYLLYTGGTTGMPKGVMWRQED-IFRVLLGGRDFATGEPIEDEEELAKRAAAGPGMRR 222
Query: 141 ----PMFHTFGTAM-GILNAMNHGSTTVV-PAPSFKPMDSLRAIAKEK 182
P+ H G A+ G T V+ P F + R I +EK
Sbjct: 223 FPAPPLMH--GAGQWAAFAALFSGQTVVLLPDVRFDADEVWRTIEREK 268
>gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1.
Length = 546
Score = 36.5 bits (84), Expect = 0.006
Identities = 26/71 (36%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
Query: 98 FTSGTTGHPKAAFLTHYNLINN--SNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNA 155
F+SGTTG K LTH NL+ N S+ E + L +P FH +G GI A
Sbjct: 191 FSSGTTGISKGVMLTHRNLVANLCSSLFSVGPEMIGQVVTLGL-IPFFHIYGIT-GICCA 248
Query: 156 M--NHGSTTVV 164
N G V+
Sbjct: 249 TLRNKGKVVVM 259
>gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated.
Length = 540
Score = 36.3 bits (84), Expect = 0.007
Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 7/86 (8%)
Query: 99 TSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFG--TAMGILNAM 156
TSGTT PK L+ ++ I + +D +L +P FG T +G L
Sbjct: 189 TSGTTSGPKLVLHRQATLLRHARAIARAYGYDP-GAVLLAALPFCGVFGFSTLLGAL--- 244
Query: 157 NHGSTTVVPAPSFKPMDSLRAIAKEK 182
G +V P F + RA+ + +
Sbjct: 245 -AGGAPLVCEPVFDAARTARALRRHR 269
>gnl|CDD|181109 PRK07769, PRK07769, long-chain-fatty-acid--CoA ligase; Validated.
Length = 631
Score = 35.9 bits (83), Expect = 0.009
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Query: 96 IQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNA 155
+Q+TSG+T P +TH NL N + LE + D + +P FH G +L A
Sbjct: 185 LQYTSGSTRIPAGVQITHLNLPTNVLQVIDALEGQEGDRGVSW-LPFFHDMGLITVLLPA 243
Query: 156 MNHGSTTVVPAPSF--KPMDSLRAIAKE 181
+ T + +F +P +R +A++
Sbjct: 244 LLGHYITFMSPAAFVRRPGRWIRELARK 271
>gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family. Characterized
members of this protein family include benzoate-CoA
ligase, 4-hydroxybenzoate-CoA ligase,
2-aminobenzoate-CoA ligase, etc. Members are related to
fatty acid and acetate CoA ligases.
Length = 508
Score = 35.6 bits (82), Expect = 0.012
Identities = 19/82 (23%), Positives = 33/82 (40%), Gaps = 6/82 (7%)
Query: 97 QFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAM 156
++SG+TG PK TH N + + + D + +F +G + M
Sbjct: 167 LYSSGSTGMPKGVVHTHSNPYWTAELYARNTLGIREDDVVFSAAKLFFAYGLGNALTFPM 226
Query: 157 NHGSTTVV------PAPSFKPM 172
+ G+TTV+ P F +
Sbjct: 227 SVGATTVLMGERPTPDAVFDRL 248
>gnl|CDD|172019 PRK13382, PRK13382, acyl-CoA synthetase; Provisional.
Length = 537
Score = 35.5 bits (82), Expect = 0.013
Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 3/92 (3%)
Query: 91 RDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAM 150
R G I TSGTTG PK A + I I R + + + ++ PMFH +G +
Sbjct: 196 RKGRVILLTSGTTGTPKGARRSGPGGIGTLKAILDRTPW-RAEEPTVIVAPMFHAWGFSQ 254
Query: 151 GILNAMNHGSTTVVPAPSFKPMDSLRAIAKEK 182
+L A + T+V F P +L I + +
Sbjct: 255 LVLAASL--ACTIVTRRRFDPEATLDLIDRHR 284
>gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional.
Length = 562
Score = 35.2 bits (81), Expect = 0.014
Identities = 14/24 (58%), Positives = 17/24 (70%)
Query: 96 IQFTSGTTGHPKAAFLTHYNLINN 119
+Q+T GTTG K A LTH NL+ N
Sbjct: 212 LQYTGGTTGLAKGAMLTHGNLVAN 235
>gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional.
Length = 570
Score = 35.3 bits (82), Expect = 0.014
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 11/49 (22%)
Query: 77 YHRRREQISKSLNCR-----DGINIQFTSGTTGHPKA------AFLTHY 114
++ EQ S + DG + +TSG+TG PK A L HY
Sbjct: 186 FNALMEQASDEFDIEWTDREDGAILHYTSGSTGKPKGVLHVHNAMLQHY 234
>gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS), including Bacillus subtilis
termination module Surfactin (SrfA-C). The adenylation
(A) domain of NRPS recognizes a specific amino acid or
hydroxy acid and activates it as an (amino) acyl
adenylate by hydrolysis of ATP. The activated acyl
moiety then forms a thioester to the enzyme-bound
cofactor phosphopantetheine of a peptidyl carrier
protein domain. NRPSs are large multifunctional enzymes
which synthesize many therapeutically useful peptides in
bacteria and fungi via a template-directed, nucleic acid
independent nonribosomal mechanism. These natural
products include antibiotics, immunosuppressants, plant
and animal toxins, and enzyme inhibitors. NRPS has a
distinct modular structure in which each module is
responsible for the recognition, activation, and, in
some cases, modification of a single amino acid residue
of the final peptide product. The modules can be
subdivided into domains that catalyze specific
biochemical reactions. This family includes the
adenylation domain of the Bacillus subtilis termination
module (Surfactin domain, SrfA-C) which recognizes a
specific amino acid building block, which is then
activated and transferred to the terminal thiol of the
4'-phosphopantetheine (Ppan) arm of the downstream
peptidyl carrier protein (PCP) domain.
Length = 474
Score = 35.2 bits (82), Expect = 0.015
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 7/41 (17%)
Query: 96 IQFTSGTTGHPKAAFLTHYN---LINNSNFIGKRLEFDKTD 133
+ +TSG+TG PK + H L+ N+N+I D D
Sbjct: 132 VMYTSGSTGRPKGVAVPHRGVVRLVRNTNYI----ALDPDD 168
>gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated.
Length = 524
Score = 35.3 bits (82), Expect = 0.015
Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 4/92 (4%)
Query: 91 RDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAM 150
D + +T GTTG PK TH ++ + E+ D + L+ P+ H G
Sbjct: 168 PDIAGLAYTGGTTGKPKGVMGTHRSIATMAQIQLAEWEWPA-DPRFLMCTPLSHAGGAF- 225
Query: 151 GILNAMNHGSTTVVPAPSFKPMDSLRAIAKEK 182
L + G T +V F P + LRAI +++
Sbjct: 226 -FLPTLLRGGTVIV-LAKFDPAEVLRAIEEQR 255
>gnl|CDD|213283 cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetases similar to
LC-FACS from Thermus thermophiles. This family includes
fatty acyl-CoA synthetases that can activate
medium-chain to long-chain fatty acids. They catalyze
the ATP-dependent acylation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. Fatty
acyl-CoA synthetases are responsible for fatty acid
degradation as well as physiological regulation of
cellular functions via the production of fatty acyl-CoA
esters. The fatty acyl-CoA synthetase from Thermus
thermophiles in this family has been shown to catalyze
the long-chain fatty acid, myristoyl acid, while another
member in this family, the AlkK protein identified in
Pseudomonas oleovorans, targets medium chain fatty
acids. This family also includes an uncharacterized
subgroup of FACS.
Length = 509
Score = 35.1 bits (80), Expect = 0.016
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 92 DGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILL-QVPMFHTFG 147
+ +T+GTTG PK +H L+ +S ++ ++L VPMFH
Sbjct: 154 AACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNA 210
>gnl|CDD|236363 PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase;
Provisional.
Length = 458
Score = 34.8 bits (81), Expect = 0.019
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 98 FTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGIL 153
TSG+TG PKAA T + ++ + + F D LL +P+FH G GI+
Sbjct: 142 LTSGSTGLPKAAVHTAQAHLASAEGVLSLMPFTAQD-SWLLSLPLFHVSG--QGIV 194
>gnl|CDD|233551 TIGR01734, D-ala-DACP-lig, D-alanine--poly(phosphoribitol) ligase,
subunit 1. This model represents the enzyme (also
called D-alanine-D-alanyl carrier protein ligase) which
activates D-alanine as an adenylate via the reaction
D-ala + ATP -> D-ala-AMP + PPi, and further catalyzes
the condensation of the amino acid adenylate with the
D-alanyl carrier protein (D-ala-ACP). The D-alanine is
then further transferred to teichoic acid in the
biosynthesis of lipoteichoic acid (LTA) and wall
teichoic acid (WTA) in gram positive bacteria, both
polysacchatides [Cell envelope, Biosynthesis and
degradation of murein sacculus and peptidoglycan].
Length = 502
Score = 34.7 bits (80), Expect = 0.020
Identities = 13/40 (32%), Positives = 25/40 (62%)
Query: 84 ISKSLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFI 123
++ D I +TSG+TG+PK ++H NL++ +N++
Sbjct: 134 FDHAVKGDDNYYIIYTSGSTGNPKGVQISHDNLVSFTNWM 173
>gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS), including Streptoalloteichus
tallysomycin biosynthesis genes. The adenylation (A)
domain of NRPS recognizes a specific amino acid or
hydroxy acid and activates it as an (amino) acyl
adenylate by hydrolysis of ATP. The activated acyl
moiety then forms a thioester to the enzyme-bound
cofactor phosphopantetheine of a peptidyl carrier
protein domain. NRPSs are large multifunctional enzymes
which synthesize many therapeutically useful peptides in
bacteria and fungi via a template-directed, nucleic acid
independent nonribosomal mechanism. These natural
products include antibiotics, immunosuppressants, plant
and animal toxins, and enzyme inhibitors. NRPS has a
distinct modular structure in which each module is
responsible for the recognition, activation, and in some
cases, modification of a single amino acid residue of
the final peptide product. The modules can be subdivided
into domains that catalyze specific biochemical
reactions. This family includes the TLM biosynthetic
gene cluster from Streptoalloteichus that consists of
nine NRPS genes; the N-terminal module of TlmVI (NRPS-5)
and the starter module of BlmVI (NRPS-5) are comprised
of the acyl CoA ligase (AL) and acyl carrier protein
(ACP)-like domains, which are thought to be involved in
the biosynthesis of the beta-aminoalaninamide moiety.
Length = 476
Score = 34.9 bits (81), Expect = 0.020
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 98 FTSGTTGHPKAAFLTHYNLIN 118
FTSG+TG PK +TH +N
Sbjct: 133 FTSGSTGEPKGVMITHRAAVN 153
>gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase.
Length = 563
Score = 34.8 bits (80), Expect = 0.021
Identities = 14/25 (56%), Positives = 16/25 (64%)
Query: 96 IQFTSGTTGHPKAAFLTHYNLINNS 120
I FTSGTTG PK ++H LI S
Sbjct: 177 ICFTSGTTGRPKGVTISHSALIVQS 201
>gnl|CDD|215553 PLN03052, PLN03052, acetate--CoA ligase; Provisional.
Length = 728
Score = 34.7 bits (80), Expect = 0.022
Identities = 34/95 (35%), Positives = 39/95 (41%), Gaps = 13/95 (13%)
Query: 29 QDKIRPGRESNPRPS------AYKADALPT--KLTRLALRMGTFRLSDIMQGAGPEYHRR 80
QD I G +S P S A KA LP K R+ LR G D + A R
Sbjct: 287 QDVIVRGGKSIPLYSRVVEAKAPKAIVLPADGKSVRVKLREGDMSWDDFLARAN---GLR 343
Query: 81 REQISKS--LNCRDGINIQFTSGTTGHPKAAFLTH 113
R K+ NI F+SGTTG PKA T
Sbjct: 344 RPDEYKAVEQPVEAFTNILFSSGTTGEPKAIPWTQ 378
>gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional.
Length = 509
Score = 34.3 bits (79), Expect = 0.027
Identities = 27/96 (28%), Positives = 41/96 (42%), Gaps = 16/96 (16%)
Query: 95 NIQFTSGTTGHPK----AAF----LTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTF 146
++ +TSGTTGHPK AA + + K + LL P++H+
Sbjct: 156 SMIYTSGTTGHPKGVRRAAPTPEQAAAAEQMRALIYGLKP------GIRALLTGPLYHSA 209
Query: 147 GTAMGILNAMNHGSTTVVPAPSFKPMDSLRAIAKEK 182
A G L A G +V P F P + L+ I + +
Sbjct: 210 PNAYG-LRAGRLGG-VLVLQPRFDPEELLQLIERHR 243
>gnl|CDD|235624 PRK05850, PRK05850, acyl-CoA synthetase; Validated.
Length = 578
Score = 34.1 bits (79), Expect = 0.032
Identities = 23/93 (24%), Positives = 44/93 (47%), Gaps = 8/93 (8%)
Query: 97 QFTSGTTGHPKAAFLTHYNLINN-----SNFIGKRLEFDKTDHKILLQVPMFHTFGTAMG 151
Q+TSG+T P ++H N+I N S++ G D ++ +P +H G +G
Sbjct: 166 QYTSGSTRTPAGVMVSHRNVIANFEQLMSDYFGDTGGVPPPDTTVVSWLPFYHDMGLVLG 225
Query: 152 ILNAMNHGSTTVVPAP-SF--KPMDSLRAIAKE 181
+ + G V+ +P +F +P ++ +A
Sbjct: 226 VCAPILGGCPAVLTSPVAFLQRPARWMQLLASN 258
>gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA
synthetase (LC-FACS), including Marinobacter
hydrocarbonoclasticus isoprenoid Coenzyme A synthetase.
The members of this family are bacterial long-chain
fatty acid CoA synthetase. Marinobacter
hydrocarbonoclasticus isoprenoid Coenzyme A synthetase
in this family is involved in the synthesis of
isoprenoid wax ester storage compounds when grown on
phytol as the sole carbon source. LC-FACS catalyzes the
formation of fatty acyl-CoA in a two-step reaction: the
formation of a fatty acyl-AMP molecule as an
intermediate, and the formation of a fatty acyl-CoA.
Free fatty acids must be "activated" to their CoA
thioesters before participating in most catabolic and
anabolic reactions.
Length = 504
Score = 34.2 bits (79), Expect = 0.036
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 96 IQFTSGTTGHPKAAFLTHYNLIN 118
I +TSGTTG PK L+
Sbjct: 142 IVYTSGTTGQPKGVMLSFGAFAF 164
>gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase;
Provisional.
Length = 483
Score = 33.8 bits (78), Expect = 0.040
Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 9/56 (16%)
Query: 96 IQFTSGTTGHPKAAFLT---HYNLINNSNFIGKRLEFDKTDH-KILLQVPMFHTFG 147
I +TSGTTG PK T H+ + +G L T+ L VP+FH G
Sbjct: 146 IMYTSGTTGKPKGVIQTYGNHW-----WSAVGSALNLGLTEDDCWLAAVPIFHISG 196
>gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated.
Length = 539
Score = 33.9 bits (78), Expect = 0.043
Identities = 10/16 (62%), Positives = 13/16 (81%)
Query: 98 FTSGTTGHPKAAFLTH 113
+TSGTTG+PK A +H
Sbjct: 183 YTSGTTGNPKGALYSH 198
>gnl|CDD|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional.
Length = 700
Score = 33.8 bits (78), Expect = 0.045
Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 4/80 (5%)
Query: 48 DALPTKLTRLALRMGTFRLSDIMQGAGPEYHRRREQISKSLNCRDGINIQFTSGTTGHPK 107
D+LP + R+ + +D++ ++ N D I +TSGTTG PK
Sbjct: 225 DSLPASVDTEGCRLVAW--TDVVAKGHSA--GSHHPLNIPENNDDLALIMYTSGTTGDPK 280
Query: 108 AAFLTHYNLINNSNFIGKRL 127
TH +L + RL
Sbjct: 281 GVMHTHGSLTAGILALEDRL 300
>gnl|CDD|237144 PRK12582, PRK12582, acyl-CoA synthetase; Provisional.
Length = 624
Score = 33.9 bits (78), Expect = 0.046
Identities = 19/66 (28%), Positives = 24/66 (36%), Gaps = 2/66 (3%)
Query: 98 FTSGTTGHPKAAFLTHYNLINNSNF-IGKRLEFDKTDHKILLQ-VPMFHTFGTAMGILNA 155
FTSG+TG PKA T + N R + L +P HT G
Sbjct: 227 FTSGSTGMPKAVINTQRMMCANIAMQEQLRPREPDPPPPVSLDWMPWNHTMGGNANFNGL 286
Query: 156 MNHGST 161
+ G T
Sbjct: 287 LWGGGT 292
>gnl|CDD|235313 PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase subunit
1; Provisional.
Length = 503
Score = 33.3 bits (77), Expect = 0.061
Identities = 14/28 (50%), Positives = 21/28 (75%)
Query: 96 IQFTSGTTGHPKAAFLTHYNLINNSNFI 123
I FTSGTTG PK ++H NL++ +N++
Sbjct: 148 IIFTSGTTGKPKGVQISHDNLVSFTNWM 175
>gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites
biosynthesis, transport, and catabolism].
Length = 542
Score = 33.2 bits (76), Expect = 0.063
Identities = 26/91 (28%), Positives = 35/91 (38%), Gaps = 11/91 (12%)
Query: 97 QFTSGTTGHPKAAFLTH----YNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAM-G 151
Q + GTTG PK TH Y++ ++ G FD+ L +P H F + G
Sbjct: 195 QLSGGTTGTPKLIPRTHNDYYYSVRASAEICG----FDQ-QTVYLCALPAAHNFPLSSPG 249
Query: 152 ILNAMNHGSTTVVPAPSFKPMDSLRAIAKEK 182
L TVV AP P I +
Sbjct: 250 ALGVF-LAGGTVVLAPDPSPELCFPLIERHG 279
>gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA
synthetase like family (ACS). This family is most
similar to acetyl-CoA synthetase. Acetyl-CoA synthetase
(ACS) catalyzes the formation of acetyl-CoA from
acetate, CoA, and ATP. Synthesis of acetyl-CoA is
carried out in a two-step reaction. In the first step,
the enzyme catalyzes the synthesis of acetyl-AMP
intermediate from acetate and ATP. In the second step,
acetyl-AMP reacts with CoA to produce acetyl-CoA. This
enzyme is only present in bacteria.
Length = 443
Score = 32.8 bits (75), Expect = 0.087
Identities = 36/140 (25%), Positives = 55/140 (39%), Gaps = 21/140 (15%)
Query: 61 MGTFRLSDIM----QGAGPEYHRRREQIS--------KSLNCR----DGINIQFTSGTTG 104
+GT +L + GPE R R ++ L R D + FTSGTTG
Sbjct: 43 LGTLKLGAVYGPLFSAFGPEPIRDRLELGEAKVLITTPELYERTDPEDPALLHFTSGTTG 102
Query: 105 HPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQV--PMFHTFGTAMGILNAMNHGSTT 162
PK H ++ +++ R D + P + T GT+ GI+ + +G T
Sbjct: 103 KPKGVLHVHRAVV--AHYATARYVLDLRPDDVYWCTADPGWVT-GTSYGIIAPLLNGVTL 159
Query: 163 VVPAPSFKPMDSLRAIAKEK 182
VV F + +EK
Sbjct: 160 VVDEGEFDAERWYGILEEEK 179
>gnl|CDD|215217 PLN02387, PLN02387, long-chain-fatty-acid-CoA ligase family
protein.
Length = 696
Score = 32.8 bits (75), Expect = 0.092
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 96 IQFTSGTTGHPKAAFLTHYNLI 117
I +TSG+TG PK +TH N++
Sbjct: 255 IMYTSGSTGLPKGVMMTHGNIV 276
>gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional.
Length = 542
Score = 32.8 bits (75), Expect = 0.098
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 16/78 (20%)
Query: 98 FTSGTTGHPKAAFLTH-----YNLI-NNSNFIGKRLEFDKTDHKILLQVPMFH--TFGTA 149
+TSGTTG PK +H + L+ NN + +G +L VP+FH ++G A
Sbjct: 184 YTSGTTGDPKGVLYSHRSNVLHALMANNGDALGT-----SAADTMLPVVPLFHANSWGIA 238
Query: 150 MGILNAMNHGSTTVVPAP 167
+A + G+ V+P
Sbjct: 239 F---SAPSMGTKLVMPGA 253
>gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily
similar to Acetoacetyl-CoA synthetase. This
uncharacterized acyl-CoA synthetase family is highly
homologous to acetoacetyl-CoA synthetase. However, the
proteins in this family exist in only bacteria and
archaea. AACS is a cytosolic ligase that specifically
activates acetoacetate to its coenzyme A ester by a
two-step reaction. Acetoacetate first reacts with ATP to
form an acyl-adenylate intermediate, which then reacts
with CoA to produce an acyl-CoA ester. This is the first
step of the mevalonate pathway of isoprenoid
biosynthesis via isopentenyl diphosphate. Isoprenoids
are a large class of compounds found in all living
organisms.
Length = 474
Score = 32.6 bits (75), Expect = 0.100
Identities = 11/18 (61%), Positives = 12/18 (66%)
Query: 96 IQFTSGTTGHPKAAFLTH 113
I +TSGTTG PK TH
Sbjct: 105 IIYTSGTTGKPKGTVHTH 122
>gnl|CDD|213294 cd05928, MACS_euk, Eukaryotic Medium-chain acyl-CoA synthetase
(MACS or ACSM). MACS catalyzes the two-step activation
of medium chain fatty acids (containing 4-12 carbons).
The carboxylate substrate first reacts with ATP to form
an acyl-adenylate intermediate, which then reacts with
CoA to produce an acyl-CoA ester. The acyl-CoA is a key
intermediate in many important biosynthetic and
catabolic processes. MACS enzymes are localized to
mitochondria. Two murine MACS family proteins are found
in liver and kidney. In rodents, a MACS member is
detected particularly in the olfactory epithelium and is
called O-MACS. O-MACS demonstrates substrate preference
for the fatty acid lengths of C6-C12.
Length = 530
Score = 32.5 bits (74), Expect = 0.11
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 6/54 (11%)
Query: 60 RMGTFRLSDIMQGAGPEYHRRREQISKSLNCRDGINIQFTSGTTGHPKAAFLTH 113
R G ++++ A E+ + +KS ++ + I FTSGTTG PK A +H
Sbjct: 149 RDGWLNFKELLKEASTEHTCVK---TKS---QEPMAIYFTSGTTGFPKMAEHSH 196
>gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated.
Length = 471
Score = 32.7 bits (75), Expect = 0.11
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 6/76 (7%)
Query: 96 IQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQ-VPMFHTFGTAMGILN 154
I +TSGTTG PK L+ + + + + + ++ D +L+ +P+FH G +G+L
Sbjct: 133 IVYTSGTTGPPKGVVLSRRAIAADLDALAEAWQWTADD--VLVHGLPLFHVHGLVLGVLG 190
Query: 155 AMNHGST---TVVPAP 167
+ G+ T P P
Sbjct: 191 PLRIGNRFVHTGRPTP 206
>gnl|CDD|215552 PLN03051, PLN03051, acyl-activating enzyme; Provisional.
Length = 499
Score = 32.5 bits (74), Expect = 0.12
Identities = 13/20 (65%), Positives = 14/20 (70%)
Query: 94 INIQFTSGTTGHPKAAFLTH 113
NI F+SGTTG PKA TH
Sbjct: 122 TNILFSSGTTGEPKAIPWTH 141
>gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated.
Length = 502
Score = 31.8 bits (73), Expect = 0.17
Identities = 25/96 (26%), Positives = 37/96 (38%), Gaps = 15/96 (15%)
Query: 97 QFTSGTTGHPKA--AFLTHYNLINNSNFIGKRLEFD---KTDHKILLQVPMFHT----FG 147
++SGTTG PK L + + L F D L P++HT FG
Sbjct: 146 LYSSGTTGRPKGIKRPLPGLDPDEAPGMMLALLGFGMYGGPDSVYLSPAPLYHTAPLRFG 205
Query: 148 TAMGILNAMNHGSTTVVPAPSFKPMDSLRAIAKEKC 183
+A+ G T VV F ++L I + +
Sbjct: 206 M-----SALALGGTVVV-MEKFDAEEALALIERYRV 235
>gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 448
Score = 31.9 bits (73), Expect = 0.18
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 96 IQFTSGTTGHPKAAFL 111
I +TSG+TG PK L
Sbjct: 117 ITYTSGSTGQPKGVCL 132
>gnl|CDD|236108 PRK07824, PRK07824, O-succinylbenzoic acid--CoA ligase;
Provisional.
Length = 358
Score = 31.6 bits (72), Expect = 0.20
Identities = 12/19 (63%), Positives = 12/19 (63%)
Query: 99 TSGTTGHPKAAFLTHYNLI 117
TSGTTG PK A LT L
Sbjct: 43 TSGTTGTPKGAMLTAAALT 61
>gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS), including salinosporamide A
polyketide synthase. The adenylation (A) domain of NRPS
recognizes a specific amino acid or hydroxy acid and
activates it as an (amino) acyl adenylate by hydrolysis
of ATP. The activated acyl moiety then forms a thioester
to the enzyme-bound cofactor phosphopantetheine of a
peptidyl carrier protein domain. NRPSs are large
multifunctional enzymes which synthesize many
therapeutically useful peptides in bacteria and fungi
via a template-directed, nucleic acid independent
nonribosomal mechanism. These natural products include
antibiotics, immunosuppressants, plant and animal
toxins, and enzyme inhibitors. NRPS has a distinct
modular structure in which each module is responsible
for the recognition, activation, and in some cases,
modification of a single amino acid residue of the final
peptide product. The modules can be subdivided into
domains that catalyze specific biochemical reactions.
This family includes the myxovirescin (TA) antibiotic
biosynthetic gene in Myxococcus xanthus; TA production
plays a role in predation. It also includes the
salinosporamide A polyketide synthase which is involved
in the biosynthesis of salinosporamide A, a marine
microbial metabolite whose chlorine atom is crucial for
potent proteasome inhibition and anticancer activity.
Length = 438
Score = 31.4 bits (72), Expect = 0.24
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 98 FTSGTTGHPKAAFLTHYNLIN 118
+TSG+TG PK ++H L+N
Sbjct: 100 YTSGSTGKPKGVEVSHRALVN 120
>gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain
acyl-CoA synthetase (MACS). MACS catalyzes the two-step
activation of medium chain fatty acids (containing 4-12
carbons). The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. MACS
enzymes are localized to mitochondria.
Length = 439
Score = 31.2 bits (71), Expect = 0.34
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 96 IQFTSGTTGHPKAAFLTHYNLINN 119
+ +TSGTTG PK A H L+ +
Sbjct: 93 LIYTSGTTGPPKGALHGHRVLLGH 116
>gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated.
Length = 497
Score = 31.0 bits (70), Expect = 0.37
Identities = 22/98 (22%), Positives = 38/98 (38%), Gaps = 16/98 (16%)
Query: 92 DGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKT-------DHKILLQVPMFH 144
D + + +TSGTT PK ++ NL S D ++L+ P++H
Sbjct: 150 DLVRLMYTSGTTDRPKGVMHSYGNLHWKS--------IDHVIALGLTASERLLVVGPLYH 201
Query: 145 TFGTAMGILNAMNHGSTTVVPAPSFKPMDSLRAIAKEK 182
+ + + G T + F P L AI + +
Sbjct: 202 VGAFDLPGIAVLWVGGTLRI-HREFDPEAVLAAIERHR 238
>gnl|CDD|180289 PRK05851, PRK05851, long-chain-fatty-acid--[acyl-carrier-protein]
ligase; Validated.
Length = 525
Score = 30.9 bits (70), Expect = 0.42
Identities = 18/74 (24%), Positives = 35/74 (47%)
Query: 96 IQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNA 155
+Q T+G+TG P+ A L+ +++N + R+ D +P++H G A + A
Sbjct: 157 LQGTAGSTGTPRTAILSPGAVLSNLRGLNARVGLDAATDVGCSWLPLYHDMGLAFLLTAA 216
Query: 156 MNHGSTTVVPAPSF 169
+ + P +F
Sbjct: 217 LAGAPLWLAPTTAF 230
>gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain
acyl-CoA synthetase (MACS). MACS catalyzes the two-step
activation of medium chain fatty acids (containing 4-12
carbons). The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. MACS
enzymes are localized to mitochondria.
Length = 440
Score = 30.5 bits (69), Expect = 0.45
Identities = 18/87 (20%), Positives = 32/87 (36%), Gaps = 1/87 (1%)
Query: 96 IQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNA 155
+TSGTTG PK + L ++ ++ D + P + +G I
Sbjct: 93 QMYTSGTTGLPKGVPVPLNALAAFYAYMRYAIDLRDDDVFWNIADPGW-AYGLYYAITGP 151
Query: 156 MNHGSTTVVPAPSFKPMDSLRAIAKEK 182
+ G TTV F ++ + +
Sbjct: 152 LAMGITTVFLEGGFTAENTYDVLERLG 178
>gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or
ACSM). MACS catalyzes the two-step activation of medium
chain fatty acids (containing 4-12 carbons). The
carboxylate substrate first reacts with ATP to form an
acyl-adenylate intermediate, which then reacts with CoA
to produce an acyl-CoA ester. The acyl-CoA is a key
intermediate in many important biosynthetic and
catabolic processes.
Length = 430
Score = 30.8 bits (70), Expect = 0.46
Identities = 11/18 (61%), Positives = 12/18 (66%)
Query: 96 IQFTSGTTGHPKAAFLTH 113
+ FTSGTTG PK TH
Sbjct: 86 LYFTSGTTGLPKMVLHTH 103
>gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS), including Saframycin A gene
cluster from Streptomyces lavendulae. The adenylation
(A) domain of NRPS recognizes a specific amino acid or
hydroxy acid and activates it as an (amino) acyl
adenylate by hydrolysis of ATP. The activated acyl
moiety then forms a thioester to the enzyme-bound
cofactor phosphopantetheine of a peptidyl carrier
protein domain. NRPSs are large multifunctional enzymes
which synthesize many therapeutically useful peptides in
bacteria and fungi via a template-directed, nucleic acid
independent nonribosomal mechanism. These natural
products include antibiotics, immunosuppressants, plant
and animal toxins, and enzyme inhibitors. NRPS has a
distinct modular structure in which each module is
responsible for the recognition, activation, and in some
cases, modification of a single amino acid residue of
the final peptide product. The modules can be subdivided
into domains that catalyze specific biochemical
reactions. This family includes the saframycin A gene
cluster from Streptomyces lavendulae which implicates
the NRPS system for assembling the unusual tetrapeptidyl
skeleton in an iterative manner. It also includes
saframycin Mx1 produced by Myxococcus xanthus NRPS.
Length = 449
Score = 30.7 bits (70), Expect = 0.49
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 96 IQFTSGTTGHPKAAFLTHYNLIN 118
+ +TSG+TG PK + H N
Sbjct: 110 VIYTSGSTGRPKGVAIEHRNAAA 132
>gnl|CDD|178049 PLN02430, PLN02430, long-chain-fatty-acid-CoA ligase.
Length = 660
Score = 30.6 bits (69), Expect = 0.59
Identities = 11/18 (61%), Positives = 13/18 (72%)
Query: 96 IQFTSGTTGHPKAAFLTH 113
I +TSGT+G PK LTH
Sbjct: 225 IMYTSGTSGDPKGVVLTH 242
>gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain
acyl-CoA synthetase (MACS). MACS catalyzes the two-step
activation of medium chain fatty acids (containing 4-12
carbons). The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. MACS
enzymes are localized to mitochondria.
Length = 433
Score = 30.0 bits (68), Expect = 0.63
Identities = 13/22 (59%), Positives = 14/22 (63%)
Query: 92 DGINIQFTSGTTGHPKAAFLTH 113
D I + FTSGTTG PK TH
Sbjct: 85 DPILLYFTSGTTGLPKLVLHTH 106
>gnl|CDD|236231 PRK08308, PRK08308, acyl-CoA synthetase; Validated.
Length = 414
Score = 30.0 bits (68), Expect = 0.64
Identities = 29/140 (20%), Positives = 54/140 (38%), Gaps = 36/140 (25%)
Query: 34 PGRESNPRPSAYKADALPTKLTRLALRMGTFRLSDIMQGAGPEYHRRREQISKSLNCRDG 93
P P+ +A R+A R G L + ++ + + + +
Sbjct: 61 PIHPDTPKEAAI----------RMAKRAGCHGL--LYGE--SDFTK---LEAVNYLAEEP 103
Query: 94 INIQFTSGTTGHPKAAF---------LTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFH 144
+Q++SGTTG PK + YN + L ++ + I+ P+ H
Sbjct: 104 SLLQYSSGTTGEPKLIRRSWTEIDREIEAYN---------EALNCEQDETPIVA-CPVTH 153
Query: 145 TFGTAMGILNAMNHGSTTVV 164
++G G+L A+ GS V+
Sbjct: 154 SYGLICGVLAALTRGSKPVI 173
>gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase;
Provisional.
Length = 542
Score = 30.1 bits (68), Expect = 0.68
Identities = 22/74 (29%), Positives = 30/74 (40%), Gaps = 4/74 (5%)
Query: 92 DGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQ-VPMFHTFGTAM 150
D I +TSGTTG K H + LE D +L +P+FHT
Sbjct: 181 DTAAILYTSGTTGPSKGVCCPHAQFYWWGRNSAEDLEIGADD--VLYTTLPLFHTNALNA 238
Query: 151 GILNAMNHGSTTVV 164
A+ G+T V+
Sbjct: 239 -FFQALLAGATYVL 251
>gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional.
Length = 579
Score = 30.0 bits (67), Expect = 0.92
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
Query: 89 NCRDGINIQFTSGTTGHPKAAFLTHYN--LINNSNFIGKRLEFDKTDHKILLQVPMFHTF 146
+ D I++ +TSGTT PK ++H L S IG + T L +PMFH
Sbjct: 184 DEHDPISLNYTSGTTADPKGVVISHRGAYLSTLSAIIGWEM---GTCPVYLWTLPMFHCN 240
Query: 147 G 147
G
Sbjct: 241 G 241
>gnl|CDD|178452 PLN02861, PLN02861, long-chain-fatty-acid-CoA ligase.
Length = 660
Score = 29.8 bits (67), Expect = 0.94
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 90 CRDGI-NIQFTSGTTGHPKAAFLTHYNLI 117
+ I I +TSGTTG PK LT+ +I
Sbjct: 218 QKTDICTIMYTSGTTGEPKGVILTNRAII 246
>gnl|CDD|180293 PRK05857, PRK05857, acyl-CoA synthetase; Validated.
Length = 540
Score = 29.6 bits (66), Expect = 1.00
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 92 DGINIQFTSGTTGHPKAAFL 111
D + + FTSGTTG PKA L
Sbjct: 170 DPLAMIFTSGTTGEPKAVLL 189
>gnl|CDD|224458 COG1541, PaaK, Coenzyme F390 synthetase [Coenzyme metabolism].
Length = 438
Score = 29.2 bits (66), Expect = 1.2
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 96 IQFTSGTTGHPKAAFLTHYNLINNSNFI 123
I +SGTTG P T ++ + +
Sbjct: 95 IHASSGTTGKPTVFGYTAKDIERWAELL 122
>gnl|CDD|236071 PRK07638, PRK07638, acyl-CoA synthetase; Validated.
Length = 487
Score = 29.4 bits (66), Expect = 1.2
Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 11/89 (12%)
Query: 98 FTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFD-KTDHKILLQVPMFHT---FGTAMGIL 153
FTSG+TG PKA + ++ +F +F K + +L+ + H+ +G A+ L
Sbjct: 150 FTSGSTGKPKAFLRAQQSWLH--SFDCNVHDFHMKREDSVLIAGTLVHSLFLYG-AISTL 206
Query: 154 NAMNHGSTTVVPAPSFKPMDSLRAIAKEK 182
+ TV F P L + E
Sbjct: 207 ----YVGQTVHLMRKFIPNQVLDKLETEN 231
>gnl|CDD|132378 TIGR03335, F390_ftsA, coenzyme F390 synthetase. This enzyme,
characterized in Methanobacterium thermoautotrophicum
and found in several other methanogens, modifies
coenzyme F420 by ligation of AMP (or GMP) from ATP (or
GTP). On F420, it activates an aromatic hydroxyl group,
which is unusual chemistry for an adenylyltransferase.
This enzyme name has been attached to numbers of
uncharacterized genes likely to instead act as
phenylacetate CoA ligase, based on proximity to
predicted indolepyruvate ferredoxin oxidoreductase
(1.2.7.8) genes. The enzyme acts during transient
exposure of the organism to oxygen [Biosynthesis of
cofactors, prosthetic groups, and carriers, Other,
Energy metabolism, Methanogenesis].
Length = 445
Score = 29.1 bits (65), Expect = 1.3
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 86 KSLNCRDGINIQFTSGTTGHPKAAFLT 112
KS + +D I TSGT+G PK+ FLT
Sbjct: 81 KSADWKDIYTIHETSGTSGTPKSFFLT 107
>gnl|CDD|240370 PTZ00342, PTZ00342, acyl-CoA synthetase; Provisional.
Length = 746
Score = 28.9 bits (65), Expect = 1.7
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 96 IQFTSGTTGHPKAAFLTHYNLIN 118
I +TSGT+G PK L++ NL N
Sbjct: 309 IVYTSGTSGKPKGVMLSNKNLYN 331
>gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS)
of AAE_MA like. MACS catalyzes the two-step activation
of medium chain fatty acids (containing 4-12 carbons).
The carboxylate substrate first reacts with ATP to form
an acyl-adenylate intermediate, which then reacts with
CoA to produce an acyl-CoA ester. This family of MACS
enzymes is found in archaea and bacteria. It is
represented by the acyl-adenylating enzyme from
Methanosarcina acetivorans (AAE_MA). AAE_MA is most
active with propionate, butyrate, and the branched
analogs: 2-methyl-propionate, butyrate, and pentanoate.
The specific activity is weaker for smaller or larger
acids.
Length = 537
Score = 28.5 bits (64), Expect = 2.5
Identities = 9/12 (75%), Positives = 10/12 (83%)
Query: 96 IQFTSGTTGHPK 107
+ FTSGTTG PK
Sbjct: 190 VYFTSGTTGMPK 201
>gnl|CDD|240553 cd13148, MATE_like_3, Uncharacterized subfamily of the multidrug
and toxic compound extrusion (MATE) proteins. The
integral membrane proteins from the MATE family are
involved in exporting metabolites across the cell
membrane and are responsible for multidrug resistance
(MDR) in many bacteria and animals. A number of family
members are involved in the synthesis of peptidoglycan
components in bacteria.
Length = 441
Score = 28.4 bits (64), Expect = 2.6
Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 8/37 (21%)
Query: 123 IGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHG 159
IG RLEF L +P+ G AM + MN G
Sbjct: 278 IGSRLEF--------LLIPLVFGLGAAMTAMVGMNIG 306
>gnl|CDD|213308 cd05943, AACS, Acetoacetyl-CoA synthetase (acetoacetate-CoA ligase,
AACS). AACS is a cytosolic ligase that specifically
activates acetoacetate to its coenzyme A ester by a
two-step reaction. Acetoacetate first reacts with ATP to
form an acyl-adenylate intermediate, which then reacts
with CoA to produce an acyl-CoA ester. This is the first
step of the mevalonate pathway of isoprenoid
biosynthesis via isopentenyl diphosphate. Isoprenoids
are a large class of compounds found in all living
organisms. AACS is widely distributed in bacteria,
archaea and eukaryotes. In bacteria, AACS is known to
exhibit an important role in the metabolism of
poly-b-hydroxybutyrate, an intracellular reserve of
organic carbon and chemical energy by some
microorganisms. In mammals, AACS influences the rate of
ketone body utilization for the formation of
physiologically important fatty acids and cholesterol.
Length = 616
Score = 28.3 bits (64), Expect = 3.0
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 96 IQFTSGTTGHPKA 108
I ++SGTTG PK
Sbjct: 241 ILYSSGTTGLPKC 253
>gnl|CDD|236668 PRK10252, entF, enterobactin synthase subunit F; Provisional.
Length = 1296
Score = 28.1 bits (63), Expect = 3.1
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 96 IQFTSGTTGHPKAAFLTHYNLIN 118
I FTSG+TG PK + ++N
Sbjct: 603 IIFTSGSTGRPKGVMVGQTAIVN 625
>gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated.
Length = 567
Score = 27.7 bits (62), Expect = 3.9
Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Query: 96 IQFTSGTTGHPKAAFLTHYNLINN-SNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILN 154
+ +T GTTG PK T +++ + + D L +P F G G+L
Sbjct: 214 LNYTGGTTGMPKGCEHTQRDMVYTAAAAYAVAVVGG-EDSVFLSFLPEFWIAGENFGLLF 272
Query: 155 AMNHGSTTVVPA 166
+ G+T V+ A
Sbjct: 273 PLFSGATLVLLA 284
>gnl|CDD|223594 COG0520, csdA, Selenocysteine lyase/Cysteine desulfurase
[Posttranslational modification, protein turnover,
chaperones].
Length = 405
Score = 27.7 bits (62), Expect = 4.1
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 77 YHRRREQISKSLNCRDGINIQFTSGTT 103
Y RE +++ LN I FT GTT
Sbjct: 68 YEAAREAVARFLNADSSDEIVFTRGTT 94
>gnl|CDD|178097 PLN02479, PLN02479, acetate-CoA ligase.
Length = 567
Score = 27.9 bits (62), Expect = 4.2
Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 6/63 (9%)
Query: 51 PTKLTRLALRMGTFRLSDIMQGAGPEYHRRREQISKSLNCRDGINIQFTSGTTGHPKAAF 110
P L AL G ++ PE+ + + I + +TSGTT PK
Sbjct: 161 PKSLQY-ALGKGAIEYEKFLETGDPEFAWKPPA-----DEWQSIALGYTSGTTASPKGVV 214
Query: 111 LTH 113
L H
Sbjct: 215 LHH 217
>gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated.
Length = 579
Score = 27.7 bits (62), Expect = 4.3
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 96 IQFTSGTTGHPKAAFLTHYNLINNSNFI 123
+Q++SG+T P+ +TH L+ N I
Sbjct: 181 LQYSSGSTRFPRGVIITHRALMANLRAI 208
>gnl|CDD|234212 TIGR03443, alpha_am_amid, L-aminoadipate-semialdehyde
dehydrogenase. Members of this protein family are
L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31),
product of the LYS2 gene. It is also called
alpha-aminoadipate reductase. In fungi, lysine is
synthesized via aminoadipate. Currently, all members of
this family are fungal.
Length = 1389
Score = 27.7 bits (62), Expect = 4.9
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 98 FTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTD 133
FTSG+ G PK H++L ++ KR + D
Sbjct: 422 FTSGSEGIPKGVLGRHFSLAYYFPWMAKRFGLSEND 457
>gnl|CDD|99746 cd06453, SufS_like, Cysteine desulfurase (SufS)-like. This family
belongs to the pyridoxal phosphate (PLP)-dependent
aspartate aminotransferase superfamily (fold I). The
major groups in this CD correspond to cysteine
desulfurase (SufS) and selenocysteine lyase. SufS
catalyzes the removal of elemental sulfur and selenium
atoms from L-cysteine, L-cystine, L-selenocysteine, and
L-selenocystine to produce L-alanine; and selenocysteine
lyase catalyzes the decomposition of L-selenocysteine.
Length = 373
Score = 27.4 bits (62), Expect = 5.2
Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 3/42 (7%)
Query: 62 GTFRLSDIMQGAGPEYHRRREQISKSLNCRDGINIQFTSGTT 103
G LS A Y RE++++ +N I FT TT
Sbjct: 33 GVHELSARATDA---YEAAREKVARFINAPSPDEIIFTRNTT 71
>gnl|CDD|180374 PRK06060, PRK06060, acyl-CoA synthetase; Validated.
Length = 705
Score = 27.3 bits (60), Expect = 5.3
Identities = 11/16 (68%), Positives = 12/16 (75%)
Query: 98 FTSGTTGHPKAAFLTH 113
+TSGTTG PKAA H
Sbjct: 152 YTSGTTGPPKAAIHRH 167
>gnl|CDD|236008 PRK07390, PRK07390, NAD(P)H-quinone oxidoreductase subunit F;
Validated.
Length = 613
Score = 27.2 bits (61), Expect = 5.9
Identities = 15/46 (32%), Positives = 19/46 (41%), Gaps = 7/46 (15%)
Query: 34 PG--RESNPRPSAYKADALPTKLTRLALRMGTFRLSDIMQGAGPEY 77
PG R + PRP+AY L +T LA L I P+
Sbjct: 28 PGIIRRTGPRPAAY----LNLLMTLLAFVHSLLALRAIWNQ-PPQQ 68
>gnl|CDD|215829 pfam00266, Aminotran_5, Aminotransferase class-V. This domain is
found in amino transferases, and other enzymes including
cysteine desulphurase EC:4.4.1.-.
Length = 370
Score = 27.2 bits (61), Expect = 6.0
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 66 LSDIMQGAGPEYHRRREQISKSLNCRDGINIQFTSGTT 103
+ + + A Y RE++++ +N I FTSGTT
Sbjct: 34 VHHLGKEATQAYEEAREKVAEFINAPSDEEIIFTSGTT 71
>gnl|CDD|182799 PRK10874, PRK10874, cysteine sulfinate desulfinase; Provisional.
Length = 401
Score = 26.9 bits (60), Expect = 6.4
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 77 YHRRREQISKSLNCRDGINIQFTSGTT 103
Y REQ+++ LN D NI +T GTT
Sbjct: 65 YEAAREQVAQLLNAPDAKNIVWTRGTT 91
>gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE). PrpE catalyzes the
first step of the 2-methylcitric acid cycle for
propionate catabolism. It activates propionate to
propionyl-CoA in a two-step reaction, which proceeds
through a propionyl-AMP intermediate and requires ATP
and Mg2+. In Salmonella enterica, the PrpE protein is
required for growth of S. enterica on propionate and can
substitute for the acetyl-CoA synthetase (Acs) enzyme
during growth on acetate. PrpE can also activate
acetate, 3HP, and butyrate to their corresponding
CoA-thioesters, although with less efficiency.
Length = 607
Score = 27.3 bits (61), Expect = 6.8
Identities = 9/12 (75%), Positives = 10/12 (83%)
Query: 96 IQFTSGTTGHPK 107
I +TSGTTG PK
Sbjct: 225 ILYTSGTTGKPK 236
>gnl|CDD|233756 TIGR02166, dmsA_ynfE, anaerobic dimethyl sulfoxide reductase, A
subunit, DmsA/YnfE family. Members of this family
include known and probable dimethyl sulfoxide reductase
(DMSO reductase) A chains. In E. coli, dmsA encodes the
canonical anaerobic DMSO reductase A chain. The paralog
ynfE, as part of ynfFGH expressed from a multicopy
plasmid, could complement a dmsABC deletion, suggesting
a similar function and some overlap in specificity,
although YnfE could not substitute for DmsA in a mixed
complex.
Length = 797
Score = 27.0 bits (60), Expect = 7.0
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 51 PTKLTRLALRMGTFRLSDIMQGAGPEYHRRREQISKS 87
+ +LA +G + + I QG GP+ H EQ +++
Sbjct: 347 ADTIIKLAREIGNAKPAFISQGWGPQRHANGEQAARA 383
>gnl|CDD|235134 PRK03584, PRK03584, acetoacetyl-CoA synthetase; Provisional.
Length = 655
Score = 27.1 bits (61), Expect = 8.0
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 96 IQFTSGTTGHPKA 108
I ++SGTTG PK
Sbjct: 268 ILYSSGTTGLPKC 280
>gnl|CDD|166255 PLN02614, PLN02614, long-chain acyl-CoA synthetase.
Length = 666
Score = 26.9 bits (59), Expect = 9.0
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 92 DGINIQFTSGTTGHPKAAFLTHYNLI 117
D I +TSGTTG PK +++ +++
Sbjct: 224 DICTIMYTSGTTGDPKGVMISNESIV 249
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.134 0.390
Gapped
Lambda K H
0.267 0.0762 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,535,496
Number of extensions: 857697
Number of successful extensions: 840
Number of sequences better than 10.0: 1
Number of HSP's gapped: 784
Number of HSP's successfully gapped: 174
Length of query: 190
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 99
Effective length of database: 6,901,388
Effective search space: 683237412
Effective search space used: 683237412
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.3 bits)