RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13808
(190 letters)
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide
synthetase, antibiotic biosynthesis, siderophore
formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP:
e.23.1.1 PDB: 1md9_A* 1mdf_A
Length = 539
Score = 114 bits (287), Expect = 4e-30
Identities = 26/98 (26%), Positives = 42/98 (42%), Gaps = 3/98 (3%)
Query: 87 SLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTF 146
+ D +Q + G+TG K TH + I + + D + L +PM H +
Sbjct: 178 EVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHST-VYLAALPMAHNY 236
Query: 147 GTAM-GILNAMNHGSTTVVPAPSFKPMDSLRAIAKEKC 183
+ G+L + G VV +PS P D+ I +EK
Sbjct: 237 PLSSPGVLGVLYAGG-RVVLSPSPSPDDAFPLIEREKV 273
>3o83_A Peptide arylation enzyme; ligase, adenylation of
2,3-dihydroxybenzoate and transfer to pantetheine
cofactor of BASF; HET: IXN; 1.90A {Acinetobacter
baumannii} PDB: 3o82_A* 3o84_A*
Length = 544
Score = 113 bits (286), Expect = 5e-30
Identities = 20/97 (20%), Positives = 38/97 (39%), Gaps = 1/97 (1%)
Query: 87 SLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTF 146
S + Q + G+TG PK TH + + + + ++L +P H F
Sbjct: 187 STPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSNT-RLLCALPAPHNF 245
Query: 147 GTAMGILNAMNHGSTTVVPAPSFKPMDSLRAIAKEKC 183
+ + H VV AP+ +P++ I + +
Sbjct: 246 MLSSPGALGVLHAGGCVVMAPNPEPLNCFSIIQRHQV 282
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate
synthetase, isochroismatase...; adenylate-forming
enzymes, ANL superfamily; HET: SVS PNS; 3.10A
{Escherichia coli}
Length = 617
Score = 112 bits (282), Expect = 3e-29
Identities = 25/123 (20%), Positives = 40/123 (32%), Gaps = 9/123 (7%)
Query: 62 GTFRLSDIMQGAGPEYHRRREQISKSLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSN 121
G L D + ++ + Q + GTTG PK TH + +
Sbjct: 161 GEHNLQDAINHPAEDFTATP------SPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVR 214
Query: 122 FIGKRLEFDKTDHKILLQVPMFHTFGTAM-GILNAMNHGSTTVVPAPSFKPMDSLRAIAK 180
+ +F + + L +P H + + G L G TVV A I K
Sbjct: 215 RSVEICQFTQQT-RYLCAIPAAHNYAMSSPGSLGVFLAGG-TVVLAADPSATLCFPLIEK 272
Query: 181 EKC 183
+
Sbjct: 273 HQV 275
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase
domain alternation confo change; 2.00A {Alcaligenes SP}
SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X*
2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Length = 504
Score = 110 bits (277), Expect = 9e-29
Identities = 26/93 (27%), Positives = 46/93 (49%), Gaps = 2/93 (2%)
Query: 92 DGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDH-KILLQVPMFHTFGTAM 150
I +TSGTTG PKAA + + F+ ++ H +L +P++H G
Sbjct: 154 QPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFA 213
Query: 151 GILNAMNHGSTTVVPAPSFKPMDSLRAIAKEKC 183
++ A+ T VV F+P+D+L+ + +E+
Sbjct: 214 VLVAALALDGTYVVV-EEFRPVDALQLVQQEQV 245
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase;
HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB:
4fut_A*
Length = 503
Score = 97.3 bits (243), Expect = 5e-24
Identities = 34/134 (25%), Positives = 54/134 (40%), Gaps = 9/134 (6%)
Query: 47 ADALPTKLTRLALRMGTFRLSDIMQGAGPEYHRRREQISKSLNCRDGINIQFTSGTTGHP 106
A + + L G L+D GA + D I +TSGTTG
Sbjct: 118 AAKVGATVETLGPD-GRGSLTDAAAGASEAFATI------DRGADDLAAILYTSGTTGRS 170
Query: 107 KAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVPA 166
K A L+H NL +NS + F D ++ +P++HT G + + +++
Sbjct: 171 KGAMLSHDNLASNSLTLVDYWRFTPDDV-LIHALPIYHTHGLFVASNVTLFARG-SMIFL 228
Query: 167 PSFKPMDSLRAIAK 180
P F P L +A+
Sbjct: 229 PKFDPDKILDLMAR 242
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein
synthetase, PSI-2, protein structure initiative; 2.30A
{Staphylococcus aureus subsp}
Length = 501
Score = 94.6 bits (236), Expect = 4e-23
Identities = 29/92 (31%), Positives = 42/92 (45%), Gaps = 3/92 (3%)
Query: 92 DGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMG 151
D +I FTSGTTG KA T N ++ + L FD+ L +P++H G ++
Sbjct: 164 DIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRDT-NWLSVLPIYHISGLSV- 221
Query: 152 ILNAMNHGSTTVVPAPSFKPMDSLRAIAKEKC 183
+L A+ G TV F L I E+
Sbjct: 222 LLRAVIEGF-TVRIVDKFNAEQILTMIKNERI 252
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase);
ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis}
PDB: 3t5c_A 3t5b_A
Length = 517
Score = 91.5 bits (228), Expect = 4e-22
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
Query: 92 DGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMG 151
D + I +TSGTTGHPK TH ++ + ++ ++ D ++LL +PMFH
Sbjct: 171 DNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRD-RLLLPLPMFHVAALTTV 229
Query: 152 ILNAMNHGSTTVVPAPSFKPMDSLRAIAKEKC 183
+ + G T++ P F I +E+
Sbjct: 230 -IFSAMRGV-TLISMPQFDATKVWSLIVEERV 259
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics,
PSI-2, protein S initiative, fatty acid synthesis; HET:
GOL; 2.00A {Rhodopseudomonas palustris}
Length = 509
Score = 90.7 bits (226), Expect = 1e-21
Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 3/92 (3%)
Query: 92 DGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMG 151
DG I T+ G P+ A ++ NL+ + + + D L +P+FH G +
Sbjct: 161 DGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRLTEAD-VNLGMLPLFHVTGLGLM 219
Query: 152 ILNAMNHGSTTVVPAPSFKPMDSLRAIAKEKC 183
L G +V+ A F P + R I K
Sbjct: 220 -LTLQQAGGASVI-AAKFDPAQAARDIEAHKV 249
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel
adenylate-forming EN fold; HET: MCA AMP; 1.43A
{Streptomyces coelicolor} PDB: 3nyr_A*
Length = 505
Score = 86.5 bits (215), Expect = 2e-20
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Query: 96 IQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNA 155
+ +TSGTTG PK A + L + + ++ D ++ +P+FH G +GIL
Sbjct: 160 VVYTSGTTGPPKGAVIPRRALATTLDALADAWQWTGEDV-LVQGLPLFHVHGLVLGILGP 218
Query: 156 MNHGSTTVVPAPSFKPMDSLRAIA 179
+ G +V F + R +
Sbjct: 219 LRRGG-SVRHLGRFSTEGAARELN 241
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL
EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Length = 536
Score = 86.1 bits (214), Expect = 4e-20
Identities = 34/126 (26%), Positives = 53/126 (42%), Gaps = 12/126 (9%)
Query: 62 GTFRLSDIMQGAGPEYHRRREQISKSLNCRDGINIQFTSGTTGHPKAAFLTHYNLINN-- 119
G S++ Q E + ++ D + + ++SGTTG PK LTH LI +
Sbjct: 155 GCLHFSELTQADENEAPQV------DISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVA 208
Query: 120 --SNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVPAPSFKPMDSLRA 177
+ L F D IL +PMFH + +L + G+ ++ P F+ L
Sbjct: 209 QQVDGDNPNLYFHSED-VILCVLPMFHIYALNSIMLCGLRVGAPILI-MPKFEIGSLLGL 266
Query: 178 IAKEKC 183
I K K
Sbjct: 267 IEKYKV 272
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure
initiative, PSI-II, NYSGXRC, 11193J, structural
genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Length = 549
Score = 83.8 bits (208), Expect = 2e-19
Identities = 28/88 (31%), Positives = 37/88 (42%), Gaps = 3/88 (3%)
Query: 96 IQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNA 155
I +T GTTG PK LTH+NL N+ + D I+ +PMFH+ G++N
Sbjct: 185 IPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSHMD-TIVGCMPMFHSAE--FGLVNL 241
Query: 156 MNHGSTTVVPAPSFKPMDSLRAIAKEKC 183
M V F I K K
Sbjct: 242 MVTVGNEYVVMGMFNQEMLAENIEKYKG 269
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel,
alpha+beta, riken structural genomics/proteomics
initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata}
PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Length = 548
Score = 83.8 bits (208), Expect = 3e-19
Identities = 28/125 (22%), Positives = 46/125 (36%), Gaps = 5/125 (4%)
Query: 62 GTFRLSDIMQGAGPEYHRRREQISKSLN-CRDGINIQFTSGTTGHPKAAFLTHYNLINNS 120
G L ++ P + + ++ I +SG+TG PK LTH N++
Sbjct: 162 GYQCLDTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRF 221
Query: 121 NFIGKRLEFDKT--DHKILLQVPMFHTFGTAMGILNAMNHGSTTVVPAPSFKPMDSLRAI 178
+ + ++ +L VP H FG L + G VV F L+ +
Sbjct: 222 SHARDPIYGNQVSPGTAVLTVVPFHHGFGMFT-TLGYLICGF-RVVMLTKFDEETFLKTL 279
Query: 179 AKEKC 183
KC
Sbjct: 280 QDYKC 284
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase,
photoprotein, luminescence, aspulvinone, natural product
extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A
1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A
Length = 550
Score = 83.4 bits (207), Expect = 3e-19
Identities = 28/125 (22%), Positives = 42/125 (33%), Gaps = 5/125 (4%)
Query: 62 GTFRLSDIMQGAGPEYHRRREQISKSLNCRDGIN-IQFTSGTTGHPKAAFLTHYNLINNS 120
G + + P + + +S + I I +SG+TG PK L H
Sbjct: 160 GFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRF 219
Query: 121 NFI--GKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVPAPSFKPMDSLRAI 178
+ D IL VP H FG L + G V+ F+ LR++
Sbjct: 220 SHARDPIFGNQIIPDTAILSVVPFHHGFGM-FTTLGYLICGFRVVL-MYRFEEELFLRSL 277
Query: 179 AKEKC 183
K
Sbjct: 278 QDYKI 282
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase;
transferase; 3.10A {Arabidospis thaliana}
Length = 979
Score = 80.5 bits (199), Expect = 4e-18
Identities = 29/125 (23%), Positives = 51/125 (40%), Gaps = 7/125 (5%)
Query: 62 GTFRLSDIMQGAGPEYHRRREQISKSLNCRDGINIQFTSGTTGHPKAAFLTHYNLINN-- 119
G R +++ Q ++ D + + ++SGTTG PK LTH L+ +
Sbjct: 199 GCLRFTELTQSTTEASEVIDS---VEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVA 255
Query: 120 -SNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVPAPSFKPMDSLRAI 178
+ +D IL +PMFH + +L + G+ ++ P F+ L I
Sbjct: 256 QQVDGENPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILI-MPKFEINLLLELI 314
Query: 179 AKEKC 183
+ K
Sbjct: 315 QRCKV 319
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA
ligase; 1.84A {Burkholderia xenovorans}
Length = 529
Score = 79.9 bits (198), Expect = 6e-18
Identities = 17/87 (19%), Positives = 35/87 (40%)
Query: 96 IQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNA 155
++SG+TG PK TH NL + K + + + +F +G G+
Sbjct: 188 WLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAENDVVFSAAKLFFAYGLGNGLTFP 247
Query: 156 MNHGSTTVVPAPSFKPMDSLRAIAKEK 182
++ G+T ++ A + + +
Sbjct: 248 LSVGATAILMAERPTADAIFARLVEHR 274
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl
adenylate, structural genom 2, protein structure
initiative; HET: 1ZZ; 1.85A {Legionella pneumophila
subsp} PDB: 3lnv_A*
Length = 590
Score = 71.2 bits (175), Expect = 5e-15
Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 4/91 (4%)
Query: 96 IQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNA 155
+Q+TSG+T HPK ++H+NL++N N I + I +P H G IL
Sbjct: 172 LQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSFHMNDETI-IFSWLPPHHDMGLIGCILTP 230
Query: 156 MNHGSTTVVPAP-SF--KPMDSLRAIAKEKC 183
+ G ++ +P SF P+ L+ I K K
Sbjct: 231 IYGGIQAIMMSPFSFLQNPLSWLKHITKYKA 261
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase
like fold, AMP-binding; 2.05A {Mycobacterium
tuberculosis} PDB: 3e53_A
Length = 480
Score = 70.1 bits (172), Expect = 1e-14
Identities = 22/96 (22%), Positives = 38/96 (39%), Gaps = 8/96 (8%)
Query: 96 IQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQV-----PMFHTFGTAM 150
+Q+TSG+T P ++H N+ N + D P +H G +
Sbjct: 188 LQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWLPFYHDMGLVI 247
Query: 151 GILNAMNHGSTTVVPAP-SF--KPMDSLRAIAKEKC 183
GI + G V+ +P SF +P + +A +
Sbjct: 248 GICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFH 283
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme
family,, structural genomics, PSI-2, protein structure
initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB:
3pbk_A*
Length = 576
Score = 64.6 bits (158), Expect = 1e-12
Identities = 19/91 (20%), Positives = 39/91 (42%), Gaps = 3/91 (3%)
Query: 96 IQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGILNA 155
+Q+TSG+T P+ +TH ++ N I + + + +P +H G +L
Sbjct: 181 LQYTSGSTRFPRGVIITHREVMANLRAISHDGIKLRPGDRCVSWLPFYHDMGLVGFLLTP 240
Query: 156 MNHGSTTVVPAP-SF--KPMDSLRAIAKEKC 183
+ + F +P+ L+ I+K +
Sbjct: 241 VATQLSVDYLRTQDFAMRPLQWLKLISKNRG 271
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics,
riken structural genomics/proteomics initiative, RSGI;
HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1
PDB: 1ult_A* 1v26_A*
Length = 541
Score = 52.5 bits (127), Expect = 1e-08
Identities = 23/99 (23%), Positives = 38/99 (38%), Gaps = 14/99 (14%)
Query: 91 RDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQ-VPMFH----- 144
R + +T+GTTG PK +H L+ +S ++ ++L VPMFH
Sbjct: 176 RAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWC 235
Query: 145 -TFGTAMGILNAMNHGSTTVVPAPSFKPMDSLRAIAKEK 182
+ + G+ V+P P P + E
Sbjct: 236 LPYAATL-------VGAKQVLPGPRLDPASLVELFDGEG 267
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural
genomics, DLTA, ATP-binding, cytoplasm,
nucleotide-binding; 2.41A {Streptococcus pyogenes
serotype M6} PDB: 3lgx_A*
Length = 521
Score = 44.8 bits (107), Expect = 5e-06
Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 6/73 (8%)
Query: 98 FTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFG---TAMGILN 154
FTSGTTG PK ++H NL++ +N++ + FD +L + + M
Sbjct: 152 FTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLA---QPPYSFDLSVMYWAP 208
Query: 155 AMNHGSTTVVPAP 167
+ G T
Sbjct: 209 TLALGGTLFALPK 221
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain
acyl-COA synthetase, xenobiotic/medium-chain FA COA
ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A
3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Length = 570
Score = 42.2 bits (100), Expect = 5e-05
Identities = 26/145 (17%), Positives = 47/145 (32%), Gaps = 20/145 (13%)
Query: 47 ADALPTKLTRL----ALRMGTFRLSDIMQGAGPEYHRRREQISKSLNCRDGINIQFTSGT 102
A P+ +L G ++ A +H ++ I FTSGT
Sbjct: 164 ASECPSLRIKLLVSEKSCDGWLNFKKLLNEASTTHHCVE------TGSQEASAIYFTSGT 217
Query: 103 TGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVP----MFHTFGTAMGILNAMNH 158
+G PK A ++ +L I+ + + + + M
Sbjct: 218 SGLPKMAEHSYSSLG--LKAKMDAGWTGLQASDIMWTISDTGWILNILCSLME---PWAL 272
Query: 159 GSTTVV-PAPSFKPMDSLRAIAKEK 182
G+ T V P F P+ L+ ++
Sbjct: 273 GACTFVHLLPKFDPLVILKTLSSYP 297
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA,
non-ribosomal peptide synthetase, NRPS, adenylation
domain, D-alanylation; HET: AMP; 2.28A {Bacillus
subtilis} PDB: 3e7x_A*
Length = 511
Score = 42.1 bits (100), Expect = 5e-05
Identities = 16/73 (21%), Positives = 28/73 (38%), Gaps = 8/73 (10%)
Query: 98 FTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFG---TAMGILN 154
+TSG+TG+PK ++ NL + +++I I L F + M +
Sbjct: 150 YTSGSTGNPKGVQISAANLQSFTDWICADFPVSGGK--IFLN---QAPFSFDLSVMDLYP 204
Query: 155 AMNHGSTTVVPAP 167
+ G T
Sbjct: 205 CLQSGGTLHCVTK 217
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea
agglomerans} PDB: 3hgv_A 3l2k_A*
Length = 369
Score = 41.6 bits (97), Expect = 6e-05
Identities = 15/103 (14%), Positives = 30/103 (29%), Gaps = 6/103 (5%)
Query: 81 REQISKSLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEF--DKTDHKILL 138
+ + L + + GTTG PK + ++ + + L
Sbjct: 81 ANLVPQGLPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLA 140
Query: 139 QVPMF-HTFGTAMGILNAMNHGSTTVVPAPSFKPMDSLRAIAK 180
+P H G A+ G P R++++
Sbjct: 141 AIPTGPHIVGAINKER-ALRLGGMFFS--IDIDPRWVKRSLSE 180
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming
domain, adenylation, D-alanine protein ligase, ATP
complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A*
3dhv_A*
Length = 512
Score = 41.7 bits (99), Expect = 7e-05
Identities = 15/73 (20%), Positives = 29/73 (39%), Gaps = 8/73 (10%)
Query: 98 FTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFG---TAMGILN 154
+TSG+TG+PK +T+ L++ + + + + L F + M I
Sbjct: 151 YTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQ--VFLN---QAPFSFDLSVMDIYP 205
Query: 155 AMNHGSTTVVPAP 167
++ G T
Sbjct: 206 SLVTGGTLWAIDK 218
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate
forming; HET: PHE AMP; 1.90A {Brevibacillus brevis}
SCOP: e.23.1.1
Length = 563
Score = 40.9 bits (97), Expect = 1e-04
Identities = 19/90 (21%), Positives = 36/90 (40%), Gaps = 10/90 (11%)
Query: 98 FTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFG---TAMGILN 154
+TSGTTG+PK L H + N F L + D + Q F + + +
Sbjct: 189 YTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDR--IGQ---FASISFDASVWEMFM 243
Query: 155 AMNHGSTTVVPAP-SFKPMDSL-RAIAKEK 182
A+ G++ + + + I +++
Sbjct: 244 ALLTGASLYIILKDTINDFVKFEQYINQKE 273
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide
synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE;
2.00A {Neotyphodium lolii}
Length = 562
Score = 39.9 bits (94), Expect = 3e-04
Identities = 19/96 (19%), Positives = 28/96 (29%), Gaps = 16/96 (16%)
Query: 98 FTSGTTGHPKAAFLTHYNLIN--------NSNFIGKRLEFDKTDHKILLQVPMFHTFG-- 147
+TSG+TG PK ++ +NL + N K LE L +
Sbjct: 182 YTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGK--FLC---LASRAFD 236
Query: 148 -TAMGILNAMNHGSTTVVPAPSFKPMDSLRAIAKEK 182
+ A G V D R +
Sbjct: 237 VHIGEMFLAWRFGLCAVTGERLSMLDDLPRTFRELG 272
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein,
ligase phosphoprotein, TER module, phosphopantetheine;
2.60A {Bacillus subtilis}
Length = 1304
Score = 38.8 bits (91), Expect = 8e-04
Identities = 14/73 (19%), Positives = 24/73 (32%), Gaps = 9/73 (12%)
Query: 98 FTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFG---TAMGILN 154
+TSGTTG PK TH N+ + +D L +
Sbjct: 614 YTSGTTGKPKGNITTHANIQ---GLVKHVDYMAFSDQDTFLS---VSNYAFDAFTFDFYA 667
Query: 155 AMNHGSTTVVPAP 167
+M + + ++
Sbjct: 668 SMLNAARLIIADE 680
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.3 bits (86), Expect = 0.002
Identities = 33/185 (17%), Positives = 54/185 (29%), Gaps = 80/185 (43%)
Query: 15 IG-ESQ-PFRERTLS---HQDKIRPGRESNPRP--SAYKADALPTKLTRLALRMGTFRLS 67
IG + +L +D + E P P S + LT+ +
Sbjct: 306 IGVRCYEAYPNTSLPPSILEDSLENN-EGVPSPMLSI-------SNLTQEQV----QDYV 353
Query: 68 DIMQGAGPEYHRRREQISKSL-NCRDGINIQFTSGTTGHP-------------KAA---- 109
+ P +Q+ SL N + + +G P KA
Sbjct: 354 NKTNSHLPA----GKQVEISLVNGAKNLVV------SGPPQSLYGLNLTLRKAKAPSGLD 403
Query: 110 ----------------FL-------THYNLINNSNFIGKRL-----EFDKTDHKILLQVP 141
FL +H L+ S+ I K L F+ D +Q+P
Sbjct: 404 QSRIPFSERKLKFSNRFLPVASPFHSHL-LVPASDLINKDLVKNNVSFNAKD----IQIP 458
Query: 142 MFHTF 146
++ TF
Sbjct: 459 VYDTF 463
Score = 30.8 bits (69), Expect = 0.32
Identities = 29/174 (16%), Positives = 53/174 (30%), Gaps = 58/174 (33%)
Query: 36 RESNPRPS-AYKADA---LPT-KLTRLALRMGTFRLSDIMQGAGPEYHRRREQISKSLNC 90
+ P Y P + +LA + T +L G P R
Sbjct: 220 ENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLL----GFTPGELRSY--------- 266
Query: 91 RDGINIQFTSGTTGHPK----AAFL----THYNLINNSN-------FIGKRLEFDKTDHK 135
G TGH + A + + + + FIG R ++
Sbjct: 267 --------LKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVR------CYE 312
Query: 136 ILLQVPMFHTFGTAMGILNAMNHGSTTVVPAPSFKPMDSLRAIAKEKCMEYLTK 189
P +T + +++ + PS PM S+ + +E+ +Y+ K
Sbjct: 313 ---AYP--NTSLPPSILEDSLENNEGV----PS--PMLSISNLTQEQVQDYVNK 355
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase,
ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina
acetivorans}
Length = 580
Score = 37.2 bits (87), Expect = 0.002
Identities = 12/52 (23%), Positives = 19/52 (36%), Gaps = 2/52 (3%)
Query: 62 GTFRLSDIMQGAGPEYHRRREQISKSLNCRDGINIQFTSGTTGHPKAAFLTH 113
G ++ + P + R S D + F+SGT G PK +
Sbjct: 198 GWIDFRKELEESSPIFER--PTGEVSTKNEDICLVYFSSGTAGFPKMVEHDN 247
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier
protei ribosomal peptide synthetase, NRPS, valine
adenylation, LIG; HET: AMP; 2.15A {Pseudomonas
aeruginosa} PDB: 4dg9_A*
Length = 620
Score = 34.0 bits (79), Expect = 0.024
Identities = 19/92 (20%), Positives = 30/92 (32%), Gaps = 16/92 (17%)
Query: 98 FTSGTTGHPKAAFLTHYNLIN---NSNFIGKRLEFDKTDHKILLQVPMFHTFG---TAMG 151
F+SGTTG PKA TH + +F+ F + +
Sbjct: 171 FSSGTTGRPKAIACTHAGITRLCLGQSFLA----FAPQMR-----FLVNSPLSFDAATLE 221
Query: 152 ILNAMNHGSTTVVPAPSFK-PMDSLRAIAKEK 182
I A+ +G V+ P + I +
Sbjct: 222 IWGALLNGGCCVLNDLGPLDPGVLRQLIGERG 253
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 33.7 bits (76), Expect = 0.037
Identities = 34/228 (14%), Positives = 65/228 (28%), Gaps = 60/228 (26%)
Query: 3 LSSRNRGEKEDRIGESQPF---RERTLSHQDKIRPGRESNPRPSAYKADALPTKLTRLAL 59
L S + E+ ++ + R+R + + R Y L L L
Sbjct: 94 LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY--NVSRLQPYLK--LRQALLEL-- 147
Query: 60 RMGTFRLSDIMQGAGPEYHRRREQISKS----LNCRD-GINIQF-------TSGTTGHPK 107
R L D + G+G K+ C + + P+
Sbjct: 148 RPAKNVLIDGVLGSG-----------KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPE 196
Query: 108 AAFLTHYNL-----------INNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMGIL--- 153
L ++S+ I R+ + + + LL+ + + +L
Sbjct: 197 TVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN---CLLVLLNV 253
Query: 154 ------NAMNHGSTTVVPAPSFKPMDSLRA-IAKEKCMEY----LTKD 190
NA N ++ + D L A +++ LT D
Sbjct: 254 QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD 301
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.4 bits (65), Expect = 0.60
Identities = 14/74 (18%), Positives = 24/74 (32%), Gaps = 18/74 (24%)
Query: 18 SQPFRERTLSHQDKIRPGRESNPRPSAYKADALPTKLTRLALRMGTFRLSDIMQGAGPE- 76
+Q +R + IR RE R + DA + + A +
Sbjct: 75 AQA--DRLTQEPESIRKWREEQ-RKRLQELDAASKV-----------MEQEWREKAKKDL 120
Query: 77 ---YHRRREQISKS 87
R+ EQ+ K+
Sbjct: 121 EEWNQRQSEQVEKN 134
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 0.77
Identities = 8/44 (18%), Positives = 17/44 (38%), Gaps = 18/44 (40%)
Query: 17 ESQPFRERTLSHQDKIRPGRESNPRPSAYKADALPTKLTRLALR 60
E Q + K+ +++ + Y D+ P LA++
Sbjct: 18 EKQALK--------KL----QASLKL--YADDSAPA----LAIK 43
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like,
structural genomics, joint cente structural genomics,
JCSG; HET: MSE ADP COA; 2.20A {Bacteroides
thetaiotaomicron} PDB: 3s89_A*
Length = 436
Score = 26.5 bits (59), Expect = 5.9
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 91 RDGINIQFTSGTTGHPKAAFLT 112
RDG+ I +SGTTG+P +
Sbjct: 86 RDGVRIHSSSGTTGNPTVIVHS 107
>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET:
FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A*
3nyf_A* 3sm8_A*
Length = 381
Score = 26.4 bits (59), Expect = 6.9
Identities = 7/48 (14%), Positives = 11/48 (22%)
Query: 97 QFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFH 144
Q +TG A + Y F + P+
Sbjct: 42 QPGYHSTGRSAAHYTVAYGTPQVRALTAASRAFFDNPPAGFCEHPLLS 89
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation
pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia
cenocepacia} PDB: 2y4n_A*
Length = 437
Score = 26.1 bits (58), Expect = 8.7
Identities = 8/17 (47%), Positives = 9/17 (52%)
Query: 96 IQFTSGTTGHPKAAFLT 112
I +SGTTG P T
Sbjct: 95 IHASSGTTGKPTVVGYT 111
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.134 0.390
Gapped
Lambda K H
0.267 0.0789 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,802,013
Number of extensions: 158609
Number of successful extensions: 375
Number of sequences better than 10.0: 1
Number of HSP's gapped: 341
Number of HSP's successfully gapped: 45
Length of query: 190
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 102
Effective length of database: 4,244,745
Effective search space: 432963990
Effective search space used: 432963990
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.5 bits)