RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13808
         (190 letters)



>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica
           [TaxId: 28901]}
          Length = 643

 Score = 72.0 bits (176), Expect = 1e-15
 Identities = 18/99 (18%), Positives = 35/99 (35%), Gaps = 3/99 (3%)

Query: 88  LNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFG 147
           +N  D + I +TSG+TG PK    T    +  +    K +              +    G
Sbjct: 249 MNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTG 308

Query: 148 TAMGILNAMNHGSTTVVPAPS---FKPMDSLRAIAKEKC 183
            +  +   +  G+TT++         P    + + K + 
Sbjct: 309 HSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQV 347


>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 640

 Score = 60.3 bits (145), Expect = 1e-11
 Identities = 16/123 (13%), Positives = 37/123 (30%), Gaps = 3/123 (2%)

Query: 64  FRLSDIMQGAGPEYHRRREQISKSLNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFI 123
           F     +  A  +   +       ++  D + + +TSG+TG PK    +    +  +   
Sbjct: 212 FHAPRDLDWATEKKKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLT 271

Query: 124 GKRLEFDKTDHKILLQVPMFHTFGTAMGILNAMNHGSTTVVPAPS---FKPMDSLRAIAK 180
            +       +        +    G    +   + +G  T+V   +            I +
Sbjct: 272 MRYTFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDE 331

Query: 181 EKC 183
            K 
Sbjct: 332 HKV 334


>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168
           {Thermus thermophilus [TaxId: 274]}
          Length = 534

 Score = 43.7 bits (102), Expect = 5e-06
 Identities = 20/96 (20%), Positives = 34/96 (35%)

Query: 88  LNCRDGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFG 147
           +  R    + +T+GTTG PK    +H  L+ +S           ++  ++L V       
Sbjct: 166 VPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVN 225

Query: 148 TAMGILNAMNHGSTTVVPAPSFKPMDSLRAIAKEKC 183
                  A   G+  V+P P   P   +     E  
Sbjct: 226 AWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGV 261


>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin
           synthetase 1 {Bacillus brevis [TaxId: 1393]}
          Length = 514

 Score = 31.8 bits (71), Expect = 0.047
 Identities = 18/93 (19%), Positives = 31/93 (33%), Gaps = 1/93 (1%)

Query: 92  DGINIQFTSGTTGHPKAAFLTHYNLINNSNFIGKRLEFDKTDHKILLQVPMFHTFGTAMG 151
           D   + +TSGTTG+PK   L H  + N   F    L   + D  I     +         
Sbjct: 167 DLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDR-IGQFASISFDASVWEM 225

Query: 152 ILNAMNHGSTTVVPAPSFKPMDSLRAIAKEKCM 184
            +  +   S  ++   +            +K +
Sbjct: 226 FMALLTGASLYIILKDTINDFVKFEQYINQKEI 258


>d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase
           {Thermotoga maritima [TaxId: 2336]}
          Length = 376

 Score = 28.9 bits (63), Expect = 0.42
 Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 1/31 (3%)

Query: 73  AGPEYHRRREQISKSLNCRDGINIQFTSGTT 103
           A     + RE+++K L       I FTS  T
Sbjct: 42  ANLHMEKAREKVAKVLGVSPS-EIFFTSCAT 71


>d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase
           {Escherichia coli [TaxId: 562]}
          Length = 405

 Score = 24.9 bits (53), Expect = 8.7
 Identities = 9/31 (29%), Positives = 14/31 (45%)

Query: 73  AGPEYHRRREQISKSLNCRDGINIQFTSGTT 103
           A  +    R++ S  +N R    + F  GTT
Sbjct: 64  ATEKMENVRKRASLFINARSAEELVFVRGTT 94


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.134    0.390 

Gapped
Lambda     K      H
   0.267   0.0462    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 675,814
Number of extensions: 29062
Number of successful extensions: 60
Number of sequences better than 10.0: 1
Number of HSP's gapped: 60
Number of HSP's successfully gapped: 7
Length of query: 190
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 110
Effective length of database: 1,309,196
Effective search space: 144011560
Effective search space used: 144011560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.7 bits)