BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1381
(102 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ZWY|A Chain A, Alpha-L-Fucosidase
pdb|2ZWY|B Chain B, Alpha-L-Fucosidase
pdb|2ZWZ|A Chain A, Alpha-L-Fucosidase Complexed With Inhibitor, Core1
pdb|2ZWZ|B Chain B, Alpha-L-Fucosidase Complexed With Inhibitor, Core1
pdb|2ZX5|A Chain A, Alpha-L-Fucosidase Complexed With Inhibitor, F10
pdb|2ZX5|B Chain B, Alpha-L-Fucosidase Complexed With Inhibitor, F10
pdb|2ZX6|A Chain A, Alpha-L-Fucosidase Complexed With Inhibitor, F10-1c
pdb|2ZX6|B Chain B, Alpha-L-Fucosidase Complexed With Inhibitor, F10-1c
pdb|2ZX7|A Chain A, Alpha-L-Fucosidase Complexed With Inhibitor, F10-2c
pdb|2ZX7|B Chain B, Alpha-L-Fucosidase Complexed With Inhibitor, F10-2c
pdb|2ZX8|A Chain A, Alpha-L-Fucosidase Complexed With Inhibitor, F10-2c-O
pdb|2ZX8|B Chain B, Alpha-L-Fucosidase Complexed With Inhibitor, F10-2c-O
pdb|2ZX9|A Chain A, Alpha-L-Fucosidase Complexed With Inhibitor, B4
pdb|2ZX9|B Chain B, Alpha-L-Fucosidase Complexed With Inhibitor, B4
pdb|2ZXA|A Chain A, Alpha-L-Fucosidase Complexed With Inhibitor, Fnj-Acetyl
pdb|2ZXA|B Chain B, Alpha-L-Fucosidase Complexed With Inhibitor, Fnj-Acetyl
pdb|2ZXB|A Chain A, Alpha-L-Fucosidase Complexed With Inhibitor, Ph-6fnj
pdb|2ZXB|B Chain B, Alpha-L-Fucosidase Complexed With Inhibitor, Ph-6fnj
pdb|2ZXD|A Chain A, Alpha-L-Fucosidase Complexed With Inhibitor, Iso-6fnj
pdb|2ZXD|B Chain B, Alpha-L-Fucosidase Complexed With Inhibitor, Iso-6fnj
Length = 455
Score = 75.1 bits (183), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 40/92 (43%), Positives = 55/92 (59%), Gaps = 11/92 (11%)
Query: 16 RNYKPGFTYQDFAKDFTAEFFDANHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWN 75
+ Y F Y+ FA FTAE +D WAD+ +GAKYV+ T+KHH+G+ LW +KY +N
Sbjct: 85 KTYGENFEYEKFADLFTAEKWDPQEWADLFKKAGAKYVIPTTKHHDGFCLWGTKYT-DFN 143
Query: 76 SMDIGPKRDLV----------DYTFGNWFTGG 97
S+ GPKRDLV FG +++GG
Sbjct: 144 SVKRGPKRDLVGDLAKAVREAGLRFGVYYSGG 175
>pdb|1ODU|A Chain A, Crystal Structure Of Thermotoga Maritima Alpha-Fucosidase
In Complex With Fucose
pdb|1ODU|B Chain B, Crystal Structure Of Thermotoga Maritima Alpha-Fucosidase
In Complex With Fucose
Length = 449
Score = 75.1 bits (183), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 40/92 (43%), Positives = 55/92 (59%), Gaps = 11/92 (11%)
Query: 16 RNYKPGFTYQDFAKDFTAEFFDANHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWN 75
+ Y F Y+ FA FTAE +D WAD+ +GAKYV+ T+KHH+G+ LW +KY +N
Sbjct: 85 KTYGENFEYEKFADLFTAEKWDPQEWADLFKKAGAKYVIPTTKHHDGFCLWGTKYT-DFN 143
Query: 76 SMDIGPKRDLV----------DYTFGNWFTGG 97
S+ GPKRDLV FG +++GG
Sbjct: 144 SVKRGPKRDLVGDLAKAVREAGLRFGVYYSGG 175
>pdb|1HL8|A Chain A, Crystal Structure Of Thermotoga Maritima Alpha-Fucosidase
pdb|1HL8|B Chain B, Crystal Structure Of Thermotoga Maritima Alpha-Fucosidase
pdb|1HL9|A Chain A, Crystal Structure Of Thermotoga Maritima Alpha-Fucosidase
In Complex With A Mechanism Based Inhibitor
pdb|1HL9|B Chain B, Crystal Structure Of Thermotoga Maritima Alpha-Fucosidase
In Complex With A Mechanism Based Inhibitor
Length = 449
Score = 75.1 bits (183), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 40/92 (43%), Positives = 55/92 (59%), Gaps = 11/92 (11%)
Query: 16 RNYKPGFTYQDFAKDFTAEFFDANHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWN 75
+ Y F Y+ FA FTAE +D WAD+ +GAKYV+ T+KHH+G+ LW +KY +N
Sbjct: 85 KTYGENFEYEKFADLFTAEKWDPQEWADLFKKAGAKYVIPTTKHHDGFCLWGTKYT-DFN 143
Query: 76 SMDIGPKRDLV----------DYTFGNWFTGG 97
S+ GPKRDLV FG +++GG
Sbjct: 144 SVKRGPKRDLVGDLAKAVREAGLRFGVYYSGG 175
>pdb|2WSP|A Chain A, Thermotoga Maritima Alpha-L-Fucosynthase, Tmd224g, In
Complex With Alpha-L-Fuc-(1-2)-Beta-L-Fuc-N3
pdb|2WSP|B Chain B, Thermotoga Maritima Alpha-L-Fucosynthase, Tmd224g, In
Complex With Alpha-L-Fuc-(1-2)-Beta-L-Fuc-N3
Length = 449
Score = 75.1 bits (183), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 40/92 (43%), Positives = 55/92 (59%), Gaps = 11/92 (11%)
Query: 16 RNYKPGFTYQDFAKDFTAEFFDANHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWN 75
+ Y F Y+ FA FTAE +D WAD+ +GAKYV+ T+KHH+G+ LW +KY +N
Sbjct: 85 KTYGENFEYEKFADLFTAEKWDPQEWADLFKKAGAKYVIPTTKHHDGFCLWGTKYT-DFN 143
Query: 76 SMDIGPKRDLV----------DYTFGNWFTGG 97
S+ GPKRDLV FG +++GG
Sbjct: 144 SVKRGPKRDLVGDLAKAVREAGLRFGVYYSGG 175
>pdb|2WVV|B Chain B, Crystal Structure Of An Alpha-L-Fucosidase Gh29 From
Bacteroides Thetaiotaomicron
Length = 450
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 36 FDANHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLV 86
FDA WA + G KYV +T+KHHEG+ LWPSKY + + KRD++
Sbjct: 78 FDAKKWAKMAKEMGTKYVKITTKHHEGFCLWPSKYT-KYTVANTPYKRDIL 127
>pdb|2WVV|A Chain A, Crystal Structure Of An Alpha-L-Fucosidase Gh29 From
Bacteroides Thetaiotaomicron
pdb|2WVV|C Chain C, Crystal Structure Of An Alpha-L-Fucosidase Gh29 From
Bacteroides Thetaiotaomicron
pdb|2WVV|D Chain D, Crystal Structure Of An Alpha-L-Fucosidase Gh29 From
Bacteroides Thetaiotaomicron
Length = 450
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 36 FDANHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLV 86
FDA WA + G KYV +T+KHHEG+ LWPSKY + + KRD++
Sbjct: 78 FDAKKWAKMAKEMGTKYVKITTKHHEGFCLWPSKYT-KYTVANTPYKRDIL 127
>pdb|2WVS|A Chain A, Crystal Structure Of An Alpha-L-Fucosidase Gh29 Trapped
Covalent Intermediate From Bacteroides Thetaiotaomicron
In Complex With 2-Fluoro-Fucosyl Fluoride Using An E288q
Mutant
pdb|2WVS|B Chain B, Crystal Structure Of An Alpha-L-Fucosidase Gh29 Trapped
Covalent Intermediate From Bacteroides Thetaiotaomicron
In Complex With 2-Fluoro-Fucosyl Fluoride Using An E288q
Mutant
pdb|2WVS|C Chain C, Crystal Structure Of An Alpha-L-Fucosidase Gh29 Trapped
Covalent Intermediate From Bacteroides Thetaiotaomicron
In Complex With 2-Fluoro-Fucosyl Fluoride Using An E288q
Mutant
pdb|2WVS|D Chain D, Crystal Structure Of An Alpha-L-Fucosidase Gh29 Trapped
Covalent Intermediate From Bacteroides Thetaiotaomicron
In Complex With 2-Fluoro-Fucosyl Fluoride Using An E288q
Mutant
Length = 443
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 36 FDANHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLV 86
FDA WA + G KYV +T+KHHEG+ LWPSKY + + KRD++
Sbjct: 82 FDAKKWAKMAKEMGTKYVKITTKHHEGFCLWPSKYT-KYTVANTPYKRDIL 131
>pdb|2WVT|A Chain A, Crystal Structure Of An Alpha-L-Fucosidase Gh29 From
Bacteroides Thetaiotaomicron In Complex With A Novel
Iminosugar Fucosidase Inhibitor
pdb|2WVT|B Chain B, Crystal Structure Of An Alpha-L-Fucosidase Gh29 From
Bacteroides Thetaiotaomicron In Complex With A Novel
Iminosugar Fucosidase Inhibitor
pdb|2WVU|A Chain A, Crystal Structure Of A Michaelis Complex Of Alpha-L-
Fucosidase Gh29 From Bacteroides Thetaiotaomicron With
The Synthetic Substrate 4-Nitrophenyl-Alpha-L-Fucose
pdb|2WVU|B Chain B, Crystal Structure Of A Michaelis Complex Of Alpha-L-
Fucosidase Gh29 From Bacteroides Thetaiotaomicron With
The Synthetic Substrate 4-Nitrophenyl-Alpha-L-Fucose
pdb|2WVU|C Chain C, Crystal Structure Of A Michaelis Complex Of Alpha-L-
Fucosidase Gh29 From Bacteroides Thetaiotaomicron With
The Synthetic Substrate 4-Nitrophenyl-Alpha-L-Fucose
pdb|2WVU|D Chain D, Crystal Structure Of A Michaelis Complex Of Alpha-L-
Fucosidase Gh29 From Bacteroides Thetaiotaomicron With
The Synthetic Substrate 4-Nitrophenyl-Alpha-L-Fucose
Length = 443
Score = 51.2 bits (121), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 36 FDANHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLV 86
FDA WA + G KYV +T+KHHEG+ LWPSKY + + KRD++
Sbjct: 82 FDAKKWAKMAKEMGTKYVKITTKHHEGFCLWPSKYT-KYTVANTPYKRDIL 131
>pdb|2XIB|A Chain A, Crystal Structure Of An Alpha-L-Fucosidase Gh29 From
Bacteroides Thetaiotaomicron In Complex With
Deoxyfuconojirimycin
pdb|2XIB|B Chain B, Crystal Structure Of An Alpha-L-Fucosidase Gh29 From
Bacteroides Thetaiotaomicron In Complex With
Deoxyfuconojirimycin
pdb|2XIB|C Chain C, Crystal Structure Of An Alpha-L-Fucosidase Gh29 From
Bacteroides Thetaiotaomicron In Complex With
Deoxyfuconojirimycin
pdb|2XIB|D Chain D, Crystal Structure Of An Alpha-L-Fucosidase Gh29 From
Bacteroides Thetaiotaomicron In Complex With
Deoxyfuconojirimycin
pdb|2XII|A Chain A, Crystal Structure Of An Alpha-L-Fucosidase Gh29 From
Bacteroides Thetaiotaomicron In Complex With An Extended
9- Fluorenone Iminosugar Inhibitor
pdb|2XII|B Chain B, Crystal Structure Of An Alpha-L-Fucosidase Gh29 From
Bacteroides Thetaiotaomicron In Complex With An Extended
9- Fluorenone Iminosugar Inhibitor
Length = 453
Score = 51.2 bits (121), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 21/35 (60%), Positives = 25/35 (71%)
Query: 36 FDANHWADILASSGAKYVVLTSKHHEGYTLWPSKY 70
FDA WA + G KYV +T+KHHEG+ LWPSKY
Sbjct: 81 FDAKKWAKMAKEMGTKYVKITTKHHEGFCLWPSKY 115
>pdb|3MO4|A Chain A, The Crystal Structure Of An Alpha-(1-3,4)-Fucosidase
From Bifidobacterium Longum Subsp. Infantis Atcc 15697
pdb|3MO4|B Chain B, The Crystal Structure Of An Alpha-(1-3,4)-Fucosidase
From Bifidobacterium Longum Subsp. Infantis Atcc 15697
Length = 480
Score = 43.9 bits (102), Expect = 2e-05, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 23/39 (58%)
Query: 31 FTAEFFDANHWADILASSGAKYVVLTSKHHEGYTLWPSK 69
F D + W D L + G V+LT KHH+G+ LWPS+
Sbjct: 59 FNPRNVDVDQWXDALVAGGXAGVILTCKHHDGFCLWPSR 97
>pdb|3UET|A Chain A, Crystal Structure Of Alpha-1,34-Fucosidase From
Bifidobacterium Longum Subsp. Infantis D172aE217A
MUTANT COMPLEXED WITH LACTO-N- Fucopentaose Ii
pdb|3UET|B Chain B, Crystal Structure Of Alpha-1,34-Fucosidase From
Bifidobacterium Longum Subsp. Infantis D172aE217A
MUTANT COMPLEXED WITH LACTO-N- Fucopentaose Ii
Length = 478
Score = 43.9 bits (102), Expect = 3e-05, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 23/39 (58%)
Query: 31 FTAEFFDANHWADILASSGAKYVVLTSKHHEGYTLWPSK 69
F D + W D L + G V+LT KHH+G+ LWPS+
Sbjct: 57 FNPRNVDVDQWMDALVAGGMAGVILTCKHHDGFCLWPSR 95
>pdb|3UES|A Chain A, Crystal Structure Of Alpha-1,34-Fucosidase From
Bifidobacterium Longum Subsp. Infantis Complexed With
Deoxyfuconojirimycin
pdb|3UES|B Chain B, Crystal Structure Of Alpha-1,34-Fucosidase From
Bifidobacterium Longum Subsp. Infantis Complexed With
Deoxyfuconojirimycin
Length = 478
Score = 43.9 bits (102), Expect = 3e-05, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 23/39 (58%)
Query: 31 FTAEFFDANHWADILASSGAKYVVLTSKHHEGYTLWPSK 69
F D + W D L + G V+LT KHH+G+ LWPS+
Sbjct: 57 FNPRNVDVDQWMDALVAGGMAGVILTCKHHDGFCLWPSR 95
>pdb|3EYP|A Chain A, Crystal Structure Of Putative Alpha-L-Fucosidase From
Bacteroides Thetaiotaomicron
pdb|3EYP|B Chain B, Crystal Structure Of Putative Alpha-L-Fucosidase From
Bacteroides Thetaiotaomicron
Length = 469
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 22/40 (55%)
Query: 31 FTAEFFDANHWADILASSGAKYVVLTSKHHEGYTLWPSKY 70
F D W L ++G +LT+KH +G+ LWPSKY
Sbjct: 49 FNPTALDCRQWMQTLKAAGIPAAILTAKHADGFCLWPSKY 88
>pdb|3GZA|A Chain A, Crystal Structure Of Putative Alpha-L-Fucosidase
(Np_812709.1) From Bacteroides Thetaiotaomicron
Vpi-5482 At 1.60 A Resolution
pdb|3GZA|B Chain B, Crystal Structure Of Putative Alpha-L-Fucosidase
(Np_812709.1) From Bacteroides Thetaiotaomicron
Vpi-5482 At 1.60 A Resolution
Length = 443
Score = 32.0 bits (71), Expect = 0.091, Method: Composition-based stats.
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 31 FTAEFFDANHWADILASSGAKYVVLTSKHHEGYTLWPS 68
F + + W ++G K+ VLT+ H G+ LW S
Sbjct: 54 FNPTELNTDQWVQAAKAAGCKFAVLTATHETGFGLWQS 91
>pdb|1Z3Y|A Chain A, Structure Of Gun4-1 From Thermosynechococcus Elongatus
Length = 238
Score = 29.6 bits (65), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 9/47 (19%)
Query: 1 MLSENPNSTVTKFMERNYKPGFT---------YQDFAKDFTAEFFDA 38
+L +P ++V F++++Y G YQ+ AK F AE F+A
Sbjct: 69 LLFHSPEASVQAFLQQHYPQGVIPLRSDRGVDYQELAKLFVAEKFEA 115
>pdb|1Z3X|A Chain A, Structure Of Gun4 From Thermosynechococcus Elongatus
Length = 238
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 9/47 (19%)
Query: 1 MLSENPNSTVTKFMERNYKPGFT---------YQDFAKDFTAEFFDA 38
+L +P ++V F++++Y G YQ+ AK AE F+A
Sbjct: 69 LLFHSPEASVQAFLQQHYPQGVIPLRSDRGVDYQELAKLLVAEKFEA 115
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,872,083
Number of Sequences: 62578
Number of extensions: 149345
Number of successful extensions: 429
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 410
Number of HSP's gapped (non-prelim): 18
length of query: 102
length of database: 14,973,337
effective HSP length: 67
effective length of query: 35
effective length of database: 10,780,611
effective search space: 377321385
effective search space used: 377321385
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)