BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1381
(102 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9VTJ4|FUCO_DROME Putative alpha-L-fucosidase OS=Drosophila melanogaster GN=Fuca PE=2
SV=2
Length = 494
Score = 119 bits (297), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 52/80 (65%), Positives = 64/80 (80%)
Query: 7 NSTVTKFMERNYKPGFTYQDFAKDFTAEFFDANHWADILASSGAKYVVLTSKHHEGYTLW 66
N +FM+RNYKP FTYQ+FA FTAE F+A WA + SGA+YVVLTSKHH+G+TLW
Sbjct: 83 NPEYVQFMQRNYKPDFTYQEFASQFTAELFNATKWALLFKDSGARYVVLTSKHHDGFTLW 142
Query: 67 PSKYAFSWNSMDIGPKRDLV 86
PSK ++ WNSMD+GPKRD+V
Sbjct: 143 PSKNSYGWNSMDVGPKRDIV 162
>sp|P49713|FUCO_CAEEL Putative alpha-L-fucosidase OS=Caenorhabditis elegans GN=W03G11.3
PE=3 SV=2
Length = 482
Score = 118 bits (296), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 51/82 (62%), Positives = 69/82 (84%)
Query: 5 NPNSTVTKFMERNYKPGFTYQDFAKDFTAEFFDANHWADILASSGAKYVVLTSKHHEGYT 64
P+ V F+++NYKPG TY DFAKDFTAE+F+AN +A+ + +SGA+Y V TSKHHEG+T
Sbjct: 66 QPDKDVVNFVDKNYKPGTTYADFAKDFTAEYFNANQFAETVKTSGARYFVFTSKHHEGFT 125
Query: 65 LWPSKYAFSWNSMDIGPKRDLV 86
+WPS+ +++WNSMDIGPKRD+V
Sbjct: 126 MWPSRTSWNWNSMDIGPKRDIV 147
>sp|C3YWU0|FUCO_BRAFL Alpha-L-fucosidase OS=Branchiostoma floridae GN=BRAFLDRAFT_56888
PE=3 SV=2
Length = 449
Score = 111 bits (277), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 50/77 (64%), Positives = 63/77 (81%)
Query: 10 VTKFMERNYKPGFTYQDFAKDFTAEFFDANHWADILASSGAKYVVLTSKHHEGYTLWPSK 69
+ FM+RNY PGF Y DFA FTAE+++ WA++L +SGAKYVVLTSKHHEG+T WPSK
Sbjct: 71 IKDFMKRNYPPGFRYADFAPMFTAEWYNPLQWAEVLQASGAKYVVLTSKHHEGFTNWPSK 130
Query: 70 YAFSWNSMDIGPKRDLV 86
Y+++WNS+D GP RDLV
Sbjct: 131 YSWNWNSVDNGPHRDLV 147
>sp|Q9BTY2|FUCO2_HUMAN Plasma alpha-L-fucosidase OS=Homo sapiens GN=FUCA2 PE=1 SV=2
Length = 467
Score = 110 bits (274), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 48/76 (63%), Positives = 63/76 (82%)
Query: 11 TKFMERNYKPGFTYQDFAKDFTAEFFDANHWADILASSGAKYVVLTSKHHEGYTLWPSKY 70
+FM+ NY P F Y+DF FTA+FF+AN WADI +SGAKY+VLTSKHHEG+TLW S+Y
Sbjct: 87 VEFMKDNYPPSFKYEDFGPLFTAKFFNANQWADIFQASGAKYIVLTSKHHEGFTLWGSEY 146
Query: 71 AFSWNSMDIGPKRDLV 86
+++WN++D GPKRD+V
Sbjct: 147 SWNWNAIDEGPKRDIV 162
>sp|Q6AYS4|FUCO2_RAT Plasma alpha-L-fucosidase OS=Rattus norvegicus GN=Fuca2 PE=2 SV=1
Length = 459
Score = 109 bits (272), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 48/74 (64%), Positives = 63/74 (85%)
Query: 13 FMERNYKPGFTYQDFAKDFTAEFFDANHWADILASSGAKYVVLTSKHHEGYTLWPSKYAF 72
FM+ NY PGF Y+DF FTA++F+AN WAD+L +SGAKYVVLTSKHHEG+TLW S +++
Sbjct: 81 FMDNNYPPGFKYEDFGVLFTAKYFNANQWADLLQASGAKYVVLTSKHHEGFTLWGSAHSW 140
Query: 73 SWNSMDIGPKRDLV 86
+WN++D GPKRD+V
Sbjct: 141 NWNAVDEGPKRDIV 154
>sp|Q5RFI5|FUCO2_PONAB Plasma alpha-L-fucosidase OS=Pongo abelii GN=FUCA2 PE=2 SV=1
Length = 465
Score = 108 bits (269), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 47/76 (61%), Positives = 63/76 (82%)
Query: 11 TKFMERNYKPGFTYQDFAKDFTAEFFDANHWADILASSGAKYVVLTSKHHEGYTLWPSKY 70
+FM+ NY P F Y+DF FTA+FF+AN WADI +SGAKY+VLTSKHH+G+TLW S+Y
Sbjct: 85 VEFMKDNYPPSFKYEDFGPLFTAKFFNANQWADIFQASGAKYIVLTSKHHKGFTLWGSEY 144
Query: 71 AFSWNSMDIGPKRDLV 86
+++WN++D GPKRD+V
Sbjct: 145 SWNWNAIDEGPKRDIV 160
>sp|P17164|FUCO_RAT Tissue alpha-L-fucosidase OS=Rattus norvegicus GN=Fuca1 PE=1 SV=1
Length = 462
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 47/80 (58%), Positives = 60/80 (75%)
Query: 7 NSTVTKFMERNYKPGFTYQDFAKDFTAEFFDANHWADILASSGAKYVVLTSKHHEGYTLW 66
+S +FM+ NY PGF+Y DFA FTA FF WAD+ ++GAKYVVLT+KHHEG+T W
Sbjct: 82 SSAYVRFMKENYPPGFSYADFAPQFTARFFHPEEWADLFQAAGAKYVVLTAKHHEGFTNW 141
Query: 67 PSKYAFSWNSMDIGPKRDLV 86
PS +++WNS D+GP RDLV
Sbjct: 142 PSAVSWNWNSKDVGPHRDLV 161
>sp|Q99KR8|FUCO2_MOUSE Plasma alpha-L-fucosidase OS=Mus musculus GN=Fuca2 PE=2 SV=1
Length = 461
Score = 106 bits (264), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 47/74 (63%), Positives = 60/74 (81%)
Query: 13 FMERNYKPGFTYQDFAKDFTAEFFDANHWADILASSGAKYVVLTSKHHEGYTLWPSKYAF 72
FM NY PGF Y+DF FTA++F+AN WADIL +SGAKYVV TSKHHEG+T+W S ++
Sbjct: 83 FMNNNYAPGFKYEDFVVLFTAKYFNANQWADILQASGAKYVVFTSKHHEGFTMWGSDRSW 142
Query: 73 SWNSMDIGPKRDLV 86
+WN++D GPKRD+V
Sbjct: 143 NWNAVDEGPKRDIV 156
>sp|Q99LJ1|FUCO_MOUSE Tissue alpha-L-fucosidase OS=Mus musculus GN=Fuca1 PE=2 SV=1
Length = 452
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 45/75 (60%), Positives = 58/75 (77%)
Query: 12 KFMERNYKPGFTYQDFAKDFTAEFFDANHWADILASSGAKYVVLTSKHHEGYTLWPSKYA 71
+FM NY PGF+Y DFA FTA FF + WA++ ++GAKYVVLT+KHHEG+T WPS +
Sbjct: 77 RFMTENYPPGFSYADFAPQFTARFFHPDQWAELFQAAGAKYVVLTTKHHEGFTNWPSPVS 136
Query: 72 FSWNSMDIGPKRDLV 86
++WNS D+GP RDLV
Sbjct: 137 WNWNSKDVGPHRDLV 151
>sp|P04066|FUCO_HUMAN Tissue alpha-L-fucosidase OS=Homo sapiens GN=FUCA1 PE=1 SV=4
Length = 466
Score = 103 bits (258), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 45/75 (60%), Positives = 56/75 (74%)
Query: 12 KFMERNYKPGFTYQDFAKDFTAEFFDANHWADILASSGAKYVVLTSKHHEGYTLWPSKYA 71
+FM NY PGF+Y DF FTA FF WAD+ ++GAKYVVLT+KHHEG+T WPS +
Sbjct: 91 RFMRDNYPPGFSYADFGPQFTARFFHPEEWADLFQAAGAKYVVLTTKHHEGFTNWPSPVS 150
Query: 72 FSWNSMDIGPKRDLV 86
++WNS D+GP RDLV
Sbjct: 151 WNWNSKDVGPHRDLV 165
>sp|Q2KIM0|FUCO_BOVIN Tissue alpha-L-fucosidase OS=Bos taurus GN=FUCA1 PE=2 SV=1
Length = 468
Score = 102 bits (255), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 45/74 (60%), Positives = 57/74 (77%)
Query: 13 FMERNYKPGFTYQDFAKDFTAEFFDANHWADILASSGAKYVVLTSKHHEGYTLWPSKYAF 72
FM+ NY P F+Y DF FTA FF+ + WAD+ ++GAKYVVLT+KHHEGYT WPS ++
Sbjct: 95 FMKENYPPDFSYADFGPRFTARFFNPDSWADLFKAAGAKYVVLTTKHHEGYTNWPSPVSW 154
Query: 73 SWNSMDIGPKRDLV 86
+WNS D+GP RDLV
Sbjct: 155 NWNSKDVGPHRDLV 168
>sp|P48300|FUCO_CANFA Tissue alpha-L-fucosidase OS=Canis familiaris GN=FUCA1 PE=2 SV=1
Length = 465
Score = 102 bits (254), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 44/75 (58%), Positives = 57/75 (76%)
Query: 12 KFMERNYKPGFTYQDFAKDFTAEFFDANHWADILASSGAKYVVLTSKHHEGYTLWPSKYA 71
+FM NY PGF+Y DF FTA FF + WAD+ ++GA+YVVLT+KHHEG+T WPS +
Sbjct: 91 QFMSENYPPGFSYADFGPQFTARFFHPDTWADLFQAAGARYVVLTTKHHEGFTNWPSSVS 150
Query: 72 FSWNSMDIGPKRDLV 86
++WNS D+GP RDLV
Sbjct: 151 WNWNSNDVGPHRDLV 165
>sp|Q60HF8|FUCO_MACFA Tissue alpha-L-fucosidase OS=Macaca fascicularis GN=FUCA1 PE=2 SV=1
Length = 468
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 44/75 (58%), Positives = 55/75 (73%)
Query: 12 KFMERNYKPGFTYQDFAKDFTAEFFDANHWADILASSGAKYVVLTSKHHEGYTLWPSKYA 71
+FM NY PG +Y DF FTA FF WAD+ ++GAKYVVLT+KHHEG+T WPS +
Sbjct: 93 RFMRDNYPPGSSYADFGPQFTARFFHPEEWADLFQAAGAKYVVLTTKHHEGFTNWPSPVS 152
Query: 72 FSWNSMDIGPKRDLV 86
++WNS D+GP RDLV
Sbjct: 153 WNWNSKDVGPHRDLV 167
>sp|P10901|FUCO_DICDI Alpha-L-fucosidase OS=Dictyostelium discoideum GN=alfA PE=3 SV=1
Length = 461
Score = 96.3 bits (238), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 45/86 (52%), Positives = 59/86 (68%), Gaps = 3/86 (3%)
Query: 4 ENPNS---TVTKFMERNYKPGFTYQDFAKDFTAEFFDANHWADILASSGAKYVVLTSKHH 60
+NP+S ++ E+ + FTYQDF F FDAN WA I+ SGAKYVVLTSKHH
Sbjct: 70 KNPSSDGGATQRYHEKEFGANFTYQDFVSRFDCRLFDANEWASIIEKSGAKYVVLTSKHH 129
Query: 61 EGYTLWPSKYAFSWNSMDIGPKRDLV 86
EGYTLW S+ +++WNS++ GP D+V
Sbjct: 130 EGYTLWNSEQSWNWNSVETGPGIDIV 155
>sp|Q8GW72|FUCO1_ARATH Alpha-L-fucosidase 1 OS=Arabidopsis thaliana GN=FUC1 PE=1 SV=2
Length = 506
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 25/40 (62%)
Query: 31 FTAEFFDANHWADILASSGAKYVVLTSKHHEGYTLWPSKY 70
F +A+ W I SG V+LT+KHH+G+ LWPS+Y
Sbjct: 76 FNPTHLNASQWVQIAKDSGFSRVILTAKHHDGFCLWPSEY 115
>sp|Q7XUR3|FUCO1_ORYSJ Putative alpha-L-fucosidase 1 OS=Oryza sativa subsp. japonica
GN=Os04g0560400 PE=3 SV=2
Length = 517
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 12/16 (75%), Positives = 15/16 (93%)
Query: 53 VVLTSKHHEGYTLWPS 68
VVLT+KHH+G+ LWPS
Sbjct: 100 VVLTAKHHDGFCLWPS 115
>sp|Q8DFB2|RLMM_VIBVU Ribosomal RNA large subunit methyltransferase M OS=Vibrio
vulnificus (strain CMCP6) GN=rlmM PE=3 SV=2
Length = 363
Score = 30.0 bits (66), Expect = 4.7, Method: Composition-based stats.
Identities = 21/79 (26%), Positives = 30/79 (37%), Gaps = 8/79 (10%)
Query: 21 GFTYQDFAKDFTAEFFDANHWADILASSGAKYVVLTSKHH--EGYTLWPSKYAFSWNSMD 78
G+TYQ + D AD L +G KHH +G+ P + +W D
Sbjct: 226 GWTYQLVQRSMFVHCVDNGMMADSLMETG------QIKHHMVDGFKFEPDRKNVTWLVCD 279
Query: 79 IGPKRDLVDYTFGNWFTGG 97
+ K V + G W G
Sbjct: 280 MVEKPARVAHLMGEWLIKG 298
>sp|Q87RT2|RLMM_VIBPA Ribosomal RNA large subunit methyltransferase M OS=Vibrio
parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
GN=rlmM PE=3 SV=2
Length = 359
Score = 29.6 bits (65), Expect = 5.2, Method: Composition-based stats.
Identities = 21/79 (26%), Positives = 30/79 (37%), Gaps = 8/79 (10%)
Query: 21 GFTYQDFAKDFTAEFFDANHWADILASSGAKYVVLTSKHH--EGYTLWPSKYAFSWNSMD 78
G+TYQ + D AD L +G KHH +G+ P + +W D
Sbjct: 222 GWTYQLVKRSMFVHCVDNGMMADSLMETG------QIKHHMVDGFKFEPDRKNVTWIVCD 275
Query: 79 IGPKRDLVDYTFGNWFTGG 97
+ K V + G W G
Sbjct: 276 MVEKPARVAHLMGQWLLKG 294
>sp|Q7MN36|RLMM_VIBVY Ribosomal RNA large subunit methyltransferase M OS=Vibrio
vulnificus (strain YJ016) GN=rlmM PE=3 SV=2
Length = 359
Score = 29.6 bits (65), Expect = 5.3, Method: Composition-based stats.
Identities = 21/79 (26%), Positives = 30/79 (37%), Gaps = 8/79 (10%)
Query: 21 GFTYQDFAKDFTAEFFDANHWADILASSGAKYVVLTSKHH--EGYTLWPSKYAFSWNSMD 78
G+TYQ + D AD L +G KHH +G+ P + +W D
Sbjct: 222 GWTYQLVQRSMFVHCVDNGMMADSLMETG------QIKHHMVDGFKFEPDRKNVTWLVCD 275
Query: 79 IGPKRDLVDYTFGNWFTGG 97
+ K V + G W G
Sbjct: 276 MVEKPARVAHLMGEWLIKG 294
>sp|P28808|LCRF_YERPE Thermoregulatory protein LcrF OS=Yersinia pestis GN=lcrF PE=4 SV=1
Length = 271
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 2 LSENPNSTVTKFMERNYKPGFTYQDFAKDF 31
L P + KFME NY G+ FA++F
Sbjct: 161 LGNRPEERLQKFMEENYLQGWKLSKFAREF 190
>sp|A7N1H7|RLMM_VIBHB Ribosomal RNA large subunit methyltransferase M OS=Vibrio harveyi
(strain ATCC BAA-1116 / BB120) GN=rlmM PE=3 SV=2
Length = 359
Score = 29.6 bits (65), Expect = 5.7, Method: Composition-based stats.
Identities = 21/79 (26%), Positives = 30/79 (37%), Gaps = 8/79 (10%)
Query: 21 GFTYQDFAKDFTAEFFDANHWADILASSGAKYVVLTSKHH--EGYTLWPSKYAFSWNSMD 78
G+TYQ + D AD L +G KHH +G+ P + +W D
Sbjct: 222 GWTYQLVKRSMFVHCVDNGMMADSLMETG------QIKHHMVDGFKFEPDRKNVTWIVCD 275
Query: 79 IGPKRDLVDYTFGNWFTGG 97
+ K V + G W G
Sbjct: 276 MVEKPARVAHLMGQWLLKG 294
>sp|P0C2V5|VIRF_YEREN Virulence regulon transcriptional activator VirF OS=Yersinia
enterocolitica GN=virF PE=2 SV=1
Length = 271
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 2 LSENPNSTVTKFMERNYKPGFTYQDFAKDF 31
L P + KFME NY G+ FA++F
Sbjct: 161 LGNRPEERLQKFMEENYLQGWKLSKFAREF 190
>sp|A1JU91|VIRF_YERE8 Virulence regulon transcriptional activator VirF OS=Yersinia
enterocolitica serotype O:8 / biotype 1B (strain 8081)
GN=virF PE=3 SV=1
Length = 271
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 2 LSENPNSTVTKFMERNYKPGFTYQDFAKDF 31
L P + KFME NY G+ FA++F
Sbjct: 161 LGNRPEERLQKFMEENYLQGWKLSKFAREF 190
>sp|B7VJ92|RLMM_VIBSL Ribosomal RNA large subunit methyltransferase M OS=Vibrio
splendidus (strain LGP32) GN=rlmM PE=3 SV=2
Length = 363
Score = 29.6 bits (65), Expect = 6.4, Method: Composition-based stats.
Identities = 21/79 (26%), Positives = 30/79 (37%), Gaps = 8/79 (10%)
Query: 21 GFTYQDFAKDFTAEFFDANHWADILASSGAKYVVLTSKHH--EGYTLWPSKYAFSWNSMD 78
G+TYQ + D AD L +G KHH +G+ P + +W D
Sbjct: 226 GWTYQLVKRSMFVHCVDNGMMADSLMETG------QIKHHMVDGFKFEPDRKNVTWIICD 279
Query: 79 IGPKRDLVDYTFGNWFTGG 97
+ K V + G W G
Sbjct: 280 MVEKPARVAHLMGEWIIKG 298
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.133 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,007,037
Number of Sequences: 539616
Number of extensions: 1616117
Number of successful extensions: 3091
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 3069
Number of HSP's gapped (non-prelim): 27
length of query: 102
length of database: 191,569,459
effective HSP length: 71
effective length of query: 31
effective length of database: 153,256,723
effective search space: 4750958413
effective search space used: 4750958413
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)