Query psy1381
Match_columns 102
No_of_seqs 107 out of 966
Neff 5.2
Searched_HMMs 46136
Date Fri Aug 16 21:04:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1381.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1381hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00812 Alpha_L_fucos Alpha 100.0 1.5E-38 3.2E-43 257.2 10.0 94 5-99 50-143 (384)
2 PF01120 Alpha_L_fucos: Alpha- 100.0 2.1E-36 4.6E-41 240.1 8.2 85 14-99 69-153 (346)
3 KOG3340|consensus 100.0 4.6E-35 1E-39 236.1 5.4 94 6-99 72-165 (454)
4 COG3669 Alpha-L-fucosidase [Ca 100.0 1.9E-33 4.2E-38 229.2 5.3 92 7-99 23-116 (430)
5 PF14871 GHL6: Hypothetical gl 99.1 9.4E-11 2E-15 83.2 6.2 59 37-99 1-59 (132)
6 PF02638 DUF187: Glycosyl hydr 97.1 0.0014 3E-08 52.0 6.4 59 39-99 22-85 (311)
7 PF14488 DUF4434: Domain of un 97.0 0.0044 9.5E-08 45.3 7.3 63 34-99 15-80 (166)
8 COG1649 Uncharacterized protei 93.8 0.23 5E-06 41.7 6.6 68 30-99 55-130 (418)
9 PF13200 DUF4015: Putative gly 93.3 0.24 5.2E-06 40.0 5.7 57 39-98 16-75 (316)
10 PF04476 DUF556: Protein of un 91.5 0.44 9.6E-06 37.3 5.0 54 34-99 129-182 (235)
11 PRK13363 protocatechuate 4,5-d 90.8 0.73 1.6E-05 37.4 5.8 82 19-100 40-172 (335)
12 PRK02227 hypothetical protein; 86.9 1.2 2.7E-05 34.8 4.5 52 35-98 130-181 (238)
13 smart00642 Aamy Alpha-amylase 83.5 3.5 7.7E-05 29.8 5.3 57 43-99 26-85 (166)
14 PLN02446 (5-phosphoribosyl)-5- 81.1 5.2 0.00011 31.6 5.8 73 7-93 121-206 (262)
15 PF00128 Alpha-amylase: Alpha 77.5 2.6 5.7E-05 30.9 3.0 57 41-99 9-67 (316)
16 PRK12677 xylose isomerase; Pro 76.1 8.3 0.00018 31.6 5.8 54 34-99 29-82 (384)
17 PF10673 DUF2487: Protein of u 75.6 3.4 7.3E-05 30.0 3.0 23 39-61 74-96 (142)
18 cd07366 3MGA_Dioxygenase Subun 73.2 14 0.00031 29.9 6.3 82 19-100 39-168 (328)
19 TIGR01182 eda Entner-Doudoroff 71.9 7.5 0.00016 29.5 4.3 38 34-99 66-103 (204)
20 cd08071 MPN_DUF2466 Mov34/MPN/ 71.8 7.5 0.00016 26.5 3.9 56 32-99 42-97 (113)
21 smart00481 POLIIIAc DNA polyme 71.7 7.4 0.00016 23.3 3.5 24 34-57 13-36 (67)
22 PRK13586 1-(5-phosphoribosyl)- 71.5 6 0.00013 30.2 3.7 57 6-62 107-172 (232)
23 COG0320 LipA Lipoate synthase 71.1 4.7 0.0001 32.8 3.1 29 33-61 94-125 (306)
24 cd07367 CarBb CarBb is the B s 69.6 13 0.00028 28.8 5.2 62 39-100 32-107 (268)
25 PRK14114 1-(5-phosphoribosyl)- 68.8 7.8 0.00017 29.8 3.8 32 32-63 140-171 (241)
26 TIGR01919 hisA-trpF 1-(5-phosp 68.5 8.6 0.00019 29.5 4.0 58 7-64 109-177 (243)
27 TIGR03128 RuMP_HxlA 3-hexulose 66.7 11 0.00024 27.2 4.1 19 37-55 63-82 (206)
28 PF04002 RadC: RadC-like JAB d 66.3 6.3 0.00014 27.1 2.6 56 32-99 47-102 (123)
29 PF13460 NAD_binding_10: NADH( 65.7 10 0.00022 26.1 3.6 49 30-99 43-91 (183)
30 TIGR00608 radc DNA repair prot 65.7 8.5 0.00018 29.4 3.4 57 31-99 141-197 (218)
31 PRK00024 hypothetical protein; 65.1 7.2 0.00016 29.7 3.0 57 31-99 147-203 (224)
32 TIGR02402 trehalose_TreZ malto 62.9 26 0.00056 30.0 6.2 59 40-99 115-175 (542)
33 PF10566 Glyco_hydro_97: Glyco 62.7 28 0.00062 27.6 6.0 54 38-98 34-87 (273)
34 PTZ00445 p36-lilke protein; Pr 62.7 59 0.0013 25.3 7.6 67 28-99 17-93 (219)
35 COG0106 HisA Phosphoribosylfor 62.7 20 0.00043 28.2 5.0 73 7-93 110-190 (241)
36 COG1891 Uncharacterized protei 62.7 8.2 0.00018 29.9 2.8 55 33-99 128-182 (235)
37 PRK11709 putative L-ascorbate 62.3 12 0.00025 30.5 3.8 32 33-66 258-289 (355)
38 PLN02617 imidazole glycerol ph 62.1 12 0.00026 32.3 4.0 32 32-63 434-465 (538)
39 PF13380 CoA_binding_2: CoA bi 62.0 15 0.00032 24.9 3.8 36 39-99 69-104 (116)
40 TIGR02403 trehalose_treC alpha 61.9 20 0.00044 30.5 5.3 59 40-99 31-90 (543)
41 cd07320 Extradiol_Dioxygenase_ 61.6 24 0.00052 26.5 5.2 60 39-99 27-98 (260)
42 PRK14024 phosphoribosyl isomer 61.5 12 0.00026 28.3 3.6 34 30-63 140-173 (241)
43 PF07487 SopE_GEF: SopE GEF do 61.4 5.1 0.00011 29.8 1.5 18 84-101 64-81 (165)
44 TIGR03849 arch_ComA phosphosul 61.3 21 0.00046 27.9 5.0 48 35-91 130-181 (237)
45 PRK02083 imidazole glycerol ph 60.9 13 0.00028 28.1 3.7 31 32-62 149-179 (253)
46 PRK13209 L-xylulose 5-phosphat 60.5 7.9 0.00017 29.1 2.4 52 39-99 102-153 (283)
47 PF07338 DUF1471: Protein of u 60.1 18 0.00039 21.9 3.5 22 39-60 22-43 (56)
48 COG0107 HisF Imidazoleglycerol 58.9 16 0.00035 29.1 3.9 33 32-64 151-183 (256)
49 cd06595 GH31_xylosidase_XylS-l 58.7 11 0.00024 29.4 3.0 30 30-59 67-97 (292)
50 TIGR01515 branching_enzym alph 58.4 41 0.00088 29.1 6.7 60 39-99 160-221 (613)
51 cd06603 GH31_GANC_GANAB_alpha 58.0 12 0.00026 29.7 3.1 27 30-56 57-84 (339)
52 TIGR03586 PseI pseudaminic aci 58.0 11 0.00024 30.6 2.9 62 37-99 18-92 (327)
53 COG1400 SEC65 Signal recogniti 57.7 21 0.00046 24.3 3.9 66 27-95 23-88 (93)
54 cd07371 2A5CPDO_AB The alpha a 57.6 30 0.00065 26.7 5.3 61 39-100 29-104 (268)
55 TIGR00262 trpA tryptophan synt 57.5 26 0.00057 27.0 4.9 38 39-99 105-142 (256)
56 PRK01033 imidazole glycerol ph 57.4 18 0.00039 27.7 3.9 32 32-63 148-179 (258)
57 KOG2781|consensus 57.3 24 0.00052 28.4 4.7 52 3-60 90-143 (290)
58 PF02037 SAP: SAP domain; Int 56.2 10 0.00022 20.7 1.8 16 86-101 6-21 (35)
59 TIGR00735 hisF imidazoleglycer 56.2 31 0.00067 26.2 5.1 32 32-63 151-182 (254)
60 PRK08091 ribulose-phosphate 3- 55.3 14 0.0003 28.6 3.0 20 37-56 79-98 (228)
61 PRK09722 allulose-6-phosphate 55.2 14 0.0003 28.5 3.0 22 37-58 70-91 (229)
62 TIGR00510 lipA lipoate synthas 55.2 18 0.00038 28.9 3.7 26 38-63 96-121 (302)
63 PLN02960 alpha-amylase 55.1 36 0.00077 31.5 5.9 59 40-99 421-481 (897)
64 COG0036 Rpe Pentose-5-phosphat 54.8 14 0.00031 28.7 3.0 23 36-58 71-93 (220)
65 TIGR02456 treS_nterm trehalose 54.8 30 0.00065 29.3 5.2 59 39-98 31-90 (539)
66 PF00977 His_biosynth: Histidi 54.8 14 0.0003 27.8 2.9 46 34-93 145-190 (229)
67 PRK12313 glycogen branching en 54.6 44 0.00095 28.9 6.2 59 39-99 174-235 (633)
68 PLN02447 1,4-alpha-glucan-bran 54.4 40 0.00087 30.5 6.1 60 39-99 254-315 (758)
69 PF01055 Glyco_hydro_31: Glyco 53.1 17 0.00037 29.4 3.4 28 30-57 76-104 (441)
70 PRK10933 trehalose-6-phosphate 52.6 40 0.00086 28.9 5.6 60 39-99 36-96 (551)
71 PRK10785 maltodextrin glucosid 52.2 35 0.00077 29.4 5.3 59 39-99 182-241 (598)
72 PRK09856 fructoselysine 3-epim 52.2 15 0.00033 27.4 2.8 52 39-99 93-144 (275)
73 PRK15279 type III secretion pr 52.2 12 0.00026 29.1 2.2 42 52-101 115-156 (240)
74 PRK05402 glycogen branching en 51.9 48 0.001 29.3 6.1 60 39-99 269-330 (726)
75 PRK08883 ribulose-phosphate 3- 51.7 17 0.00037 27.5 3.0 22 37-58 69-90 (220)
76 cd06601 GH31_lyase_GLase GLase 51.6 36 0.00077 27.4 4.9 67 30-100 57-126 (332)
77 COG2185 Sbm Methylmalonyl-CoA 51.6 30 0.00065 25.2 4.1 20 80-99 74-93 (143)
78 PRK15280 type III secretion pr 51.5 12 0.00027 29.0 2.2 42 52-101 115-156 (240)
79 PRK13125 trpA tryptophan synth 51.4 18 0.00038 27.5 3.0 25 31-55 83-107 (244)
80 cd07373 2A5CPDO_A The alpha su 51.3 44 0.00096 25.8 5.3 61 39-100 32-107 (271)
81 PRK03881 hypothetical protein; 50.8 34 0.00075 28.7 4.9 61 40-100 36-108 (467)
82 cd07951 ED_3B_N_AMMECR1 The N- 50.1 39 0.00085 25.4 4.7 61 40-100 29-101 (256)
83 PF02811 PHP: PHP domain; Int 50.0 22 0.00048 24.1 3.1 24 35-58 15-38 (175)
84 PRK00748 1-(5-phosphoribosyl)- 49.6 32 0.0007 25.2 4.1 30 34-63 144-173 (233)
85 PRK06361 hypothetical protein; 49.6 30 0.00065 25.1 3.9 27 32-58 6-32 (212)
86 cd00423 Pterin_binding Pterin 49.3 54 0.0012 25.0 5.4 69 26-100 98-166 (258)
87 cd06598 GH31_transferase_CtsZ 49.1 22 0.00048 28.0 3.3 28 30-57 63-91 (317)
88 PRK08005 epimerase; Validated 48.6 20 0.00044 27.2 3.0 22 37-58 69-90 (210)
89 PRK14057 epimerase; Provisiona 48.4 20 0.00044 28.2 3.0 22 37-58 86-107 (254)
90 cd07369 PydA_Rs_like PydA is a 48.1 44 0.00096 27.1 5.0 62 39-100 36-117 (329)
91 PF00809 Pterin_bind: Pterin b 48.1 18 0.00039 26.9 2.6 50 38-100 105-163 (210)
92 PRK08745 ribulose-phosphate 3- 47.8 21 0.00046 27.2 3.0 22 37-58 73-94 (223)
93 PF11360 DUF3110: Protein of u 47.6 24 0.00051 23.4 2.8 27 32-58 51-77 (86)
94 cd06593 GH31_xylosidase_YicI Y 47.6 22 0.00048 27.6 3.1 28 30-57 59-87 (308)
95 PF00150 Cellulase: Cellulase 47.6 34 0.00075 25.0 4.0 55 37-98 22-76 (281)
96 PRK06552 keto-hydroxyglutarate 47.5 40 0.00087 25.5 4.4 20 34-54 74-93 (213)
97 smart00513 SAP Putative DNA-bi 46.9 19 0.00041 19.4 1.9 16 86-101 6-21 (35)
98 TIGR03862 flavo_PP4765 unchara 46.6 40 0.00086 27.7 4.6 51 34-99 52-102 (376)
99 cd07368 PhnC_Bs_like PhnC is a 46.5 65 0.0014 25.1 5.6 62 39-100 36-112 (277)
100 PRK15278 type III secretion pr 45.9 17 0.00037 28.3 2.2 17 85-101 145-161 (261)
101 PRK03745 signal recognition pa 45.7 48 0.001 22.7 4.2 65 30-95 26-94 (100)
102 TIGR02631 xylA_Arthro xylose i 45.6 48 0.001 27.2 4.9 54 34-99 30-83 (382)
103 PF07894 DUF1669: Protein of u 45.4 13 0.00029 29.8 1.6 17 83-99 160-176 (284)
104 TIGR01501 MthylAspMutase methy 45.1 71 0.0015 22.7 5.2 48 33-100 36-83 (134)
105 cd06594 GH31_glucosidase_YihQ 44.6 24 0.00052 28.0 2.9 30 30-59 64-94 (317)
106 PRK12858 tagatose 1,6-diphosph 44.5 23 0.00049 28.9 2.8 47 42-99 112-158 (340)
107 PRK13111 trpA tryptophan synth 44.5 48 0.001 25.8 4.5 43 34-99 102-144 (258)
108 PRK10658 putative alpha-glucos 44.3 21 0.00044 31.6 2.7 28 30-57 318-346 (665)
109 cd07372 2A5CPDO_B The beta sub 44.3 72 0.0016 25.3 5.6 62 39-100 40-115 (294)
110 cd04732 HisA HisA. Phosphorib 44.2 42 0.00091 24.5 4.0 31 33-63 143-173 (234)
111 PRK13587 1-(5-phosphoribosyl)- 44.1 41 0.00088 25.6 4.0 55 7-62 111-174 (234)
112 cd04731 HisF The cyclase subun 44.0 38 0.00083 25.2 3.8 31 32-62 145-175 (243)
113 PF12706 Lactamase_B_2: Beta-l 44.0 33 0.00073 23.6 3.3 27 30-56 166-192 (194)
114 PF13069 DUF3933: Protein of u 43.9 15 0.00032 22.4 1.2 17 47-63 36-52 (53)
115 PF00834 Ribul_P_3_epim: Ribul 43.5 15 0.00033 27.5 1.6 21 37-57 68-88 (201)
116 cd04740 DHOD_1B_like Dihydroor 43.0 98 0.0021 23.7 6.0 55 35-99 98-156 (296)
117 PF07775 PaRep2b: PaRep2b prot 42.7 18 0.00038 31.5 2.0 70 26-100 107-177 (512)
118 PRK14511 maltooligosyl trehalo 42.4 69 0.0015 29.6 5.7 61 38-99 22-84 (879)
119 cd00019 AP2Ec AP endonuclease 42.1 16 0.00034 27.6 1.5 51 39-99 88-138 (279)
120 PRK13397 3-deoxy-7-phosphohept 42.1 76 0.0017 24.9 5.3 51 39-100 32-82 (250)
121 PRK13209 L-xylulose 5-phosphat 41.7 90 0.0019 23.4 5.6 24 33-56 18-41 (283)
122 cd06591 GH31_xylosidase_XylS X 41.2 29 0.00063 27.3 2.9 26 31-56 60-86 (319)
123 PTZ00413 lipoate synthase; Pro 41.2 32 0.00069 29.0 3.2 30 32-61 173-205 (398)
124 PRK13358 protocatechuate 4,5-d 40.6 1E+02 0.0022 23.6 5.8 60 39-99 32-106 (269)
125 cd00615 Orn_deC_like Ornithine 39.9 94 0.002 23.6 5.5 46 35-99 139-185 (294)
126 PRK10605 N-ethylmaleimide redu 39.9 44 0.00096 27.0 3.8 54 42-96 165-222 (362)
127 PRK07998 gatY putative fructos 39.8 35 0.00077 27.2 3.2 43 40-99 88-130 (283)
128 TIGR00007 phosphoribosylformim 39.4 56 0.0012 24.0 4.1 29 35-63 144-172 (230)
129 cd07950 Gallate_Doxase_N The N 38.8 89 0.0019 24.5 5.3 62 39-100 38-115 (277)
130 PRK13364 protocatechuate 4,5-d 38.4 77 0.0017 25.0 4.9 62 39-100 38-115 (278)
131 PF13611 Peptidase_S76: Serine 38.1 23 0.0005 25.2 1.7 18 82-99 35-52 (121)
132 cd06604 GH31_glucosidase_II_Ma 37.6 43 0.00094 26.5 3.4 30 30-59 57-87 (339)
133 cd02933 OYE_like_FMN Old yello 37.5 58 0.0013 26.1 4.1 54 42-96 158-215 (338)
134 cd04747 OYE_like_5_FMN Old yel 37.5 52 0.0011 26.8 3.9 54 42-96 150-207 (361)
135 PF13483 Lactamase_B_3: Beta-l 37.4 45 0.00097 23.0 3.1 24 33-56 139-162 (163)
136 TIGR02298 HpaD_Fe 3,4-dihydrox 36.5 1.2E+02 0.0025 23.8 5.6 62 39-100 37-113 (282)
137 cd07365 MhpB_like Subunit B of 36.5 1.1E+02 0.0024 24.4 5.6 61 39-99 32-104 (310)
138 PRK13585 1-(5-phosphoribosyl)- 35.8 71 0.0015 23.6 4.1 29 35-63 148-176 (241)
139 cd04734 OYE_like_3_FMN Old yel 35.7 49 0.0011 26.5 3.5 54 42-96 147-204 (343)
140 KOG3111|consensus 35.3 42 0.0009 26.2 2.8 19 37-55 75-93 (224)
141 cd02130 PA_ScAPY_like PA_ScAPY 35.3 88 0.0019 20.9 4.2 21 39-59 58-78 (122)
142 cd02132 PA_GO-like PA_GO-like: 35.2 92 0.002 21.7 4.4 21 39-59 73-93 (139)
143 TIGR00640 acid_CoA_mut_C methy 35.2 89 0.0019 21.8 4.3 44 35-98 39-82 (132)
144 TIGR00542 hxl6Piso_put hexulos 35.1 43 0.00092 25.3 2.9 50 39-98 97-147 (279)
145 PRK07535 methyltetrahydrofolat 34.9 53 0.0012 25.5 3.4 77 7-100 78-154 (261)
146 KOG1643|consensus 34.7 46 0.001 26.2 3.0 48 9-56 45-93 (247)
147 PRK09505 malS alpha-amylase; R 34.5 1.1E+02 0.0024 27.3 5.7 62 38-99 232-307 (683)
148 PRK00685 metal-dependent hydro 34.5 51 0.0011 23.7 3.1 27 35-63 170-196 (228)
149 cd01093 CRIB_PAK_like PAK (p21 34.5 25 0.00054 20.4 1.2 14 38-51 28-41 (46)
150 cd04819 PA_2 PA_2: Protease-as 34.3 50 0.0011 22.5 2.9 30 39-68 60-89 (127)
151 cd04723 HisA_HisF Phosphoribos 34.1 1E+02 0.0022 23.2 4.8 30 32-62 142-171 (233)
152 PF03102 NeuB: NeuB family; I 33.9 35 0.00077 26.4 2.3 59 41-99 1-71 (241)
153 COG1234 ElaC Metal-dependent h 33.8 50 0.0011 25.9 3.2 22 35-56 234-255 (292)
154 cd04733 OYE_like_2_FMN Old yel 33.8 48 0.001 26.2 3.1 54 42-96 155-212 (338)
155 PRK13210 putative L-xylulose 5 33.8 1.8E+02 0.0039 21.5 6.1 55 33-99 13-67 (284)
156 PRK13365 protocatechuate 4,5-d 33.5 1.3E+02 0.0028 23.6 5.5 62 39-100 38-115 (279)
157 TIGR02104 pulA_typeI pullulana 33.5 94 0.002 26.8 5.0 59 40-99 168-244 (605)
158 PF13592 HTH_33: Winged helix- 33.3 62 0.0013 19.3 2.9 26 35-60 21-46 (60)
159 PRK14507 putative bifunctional 33.2 1E+02 0.0022 30.7 5.5 61 38-99 760-822 (1693)
160 TIGR02617 tnaA_trp_ase tryptop 32.9 88 0.0019 26.9 4.7 51 34-99 165-219 (467)
161 TIGR03572 WbuZ glycosyl amidat 32.8 1.2E+02 0.0026 22.3 5.0 29 34-62 151-179 (232)
162 COG2081 Predicted flavoprotein 32.8 99 0.0022 26.2 4.9 51 34-99 77-127 (408)
163 PRK13370 mhpB 3-(2,3-dihydroxy 32.7 1.6E+02 0.0036 23.5 6.0 61 39-99 32-104 (313)
164 PRK10259 hypothetical protein; 32.6 64 0.0014 21.5 3.1 20 39-58 53-72 (86)
165 cd06599 GH31_glycosidase_Aec37 32.5 57 0.0012 25.7 3.3 28 30-57 66-94 (317)
166 PF14698 ASL_C2: Argininosucci 32.5 37 0.00081 21.3 1.9 16 84-99 23-38 (70)
167 cd07584 nitrilase_6 Uncharacte 32.5 1.2E+02 0.0027 22.2 5.0 58 39-98 22-79 (258)
168 PRK12928 lipoyl synthase; Prov 32.5 66 0.0014 25.4 3.7 29 33-61 84-115 (290)
169 TIGR02129 hisA_euk phosphoribo 32.4 1E+02 0.0022 24.2 4.7 55 8-63 115-184 (253)
170 cd08802 Death_UNC5B Death doma 32.3 17 0.00037 24.1 0.3 65 26-99 8-76 (84)
171 cd00956 Transaldolase_FSA Tran 32.2 72 0.0016 23.9 3.7 50 35-100 109-158 (211)
172 PLN00196 alpha-amylase; Provis 31.8 99 0.0022 25.8 4.8 57 39-99 47-107 (428)
173 PRK13813 orotidine 5'-phosphat 31.4 76 0.0017 23.1 3.6 20 39-58 70-89 (215)
174 PRK12568 glycogen branching en 31.4 1.7E+02 0.0037 26.5 6.3 59 39-99 273-334 (730)
175 cd07370 HPCD The Class III ext 31.4 1.6E+02 0.0035 22.7 5.6 53 47-99 43-110 (280)
176 PTZ00032 60S ribosomal protein 31.1 34 0.00074 26.5 1.8 41 39-99 170-210 (211)
177 PF14572 Pribosyl_synth: Phosp 31.0 47 0.001 25.1 2.5 22 39-60 100-121 (184)
178 cd07364 PCA_45_Dioxygenase_B S 31.0 1.5E+02 0.0032 23.2 5.4 62 39-100 38-115 (277)
179 cd00617 Tnase_like Tryptophana 30.8 1E+02 0.0022 25.7 4.6 50 36-99 136-188 (431)
180 PRK02126 ribonuclease Z; Provi 30.7 75 0.0016 25.5 3.7 26 34-61 289-314 (334)
181 cd07949 PCA_45_Doxase_B_like_1 30.4 1.7E+02 0.0036 23.0 5.6 62 39-100 38-115 (276)
182 PRK14864 putative biofilm stre 30.4 71 0.0015 22.0 3.1 22 39-60 67-88 (104)
183 PF08543 Phos_pyr_kin: Phospho 30.3 63 0.0014 24.3 3.1 63 37-99 143-216 (246)
184 PRK02083 imidazole glycerol ph 30.2 67 0.0014 24.2 3.2 24 37-60 31-54 (253)
185 PRK07226 fructose-bisphosphate 29.9 55 0.0012 25.1 2.8 18 83-100 125-142 (267)
186 PRK12595 bifunctional 3-deoxy- 29.9 1.4E+02 0.0031 24.4 5.3 50 40-100 136-185 (360)
187 PRK13957 indole-3-glycerol-pho 29.9 76 0.0016 24.8 3.6 31 34-64 59-90 (247)
188 PRK03972 ribosomal biogenesis 29.5 2.1E+02 0.0045 22.1 5.8 60 2-67 6-70 (208)
189 PRK05904 coproporphyrinogen II 29.4 1.3E+02 0.0029 24.1 5.0 60 30-99 95-154 (353)
190 PRK08392 hypothetical protein; 29.4 89 0.0019 23.0 3.7 24 34-57 12-35 (215)
191 COG1166 SpeA Arginine decarbox 29.3 35 0.00076 30.4 1.7 53 45-100 293-350 (652)
192 PRK13523 NADPH dehydrogenase N 29.3 68 0.0015 25.8 3.3 54 42-96 148-205 (337)
193 PLN02334 ribulose-phosphate 3- 29.3 66 0.0014 24.0 3.0 21 37-57 76-96 (229)
194 cd04724 Tryptophan_synthase_al 29.1 66 0.0014 24.4 3.0 18 39-56 94-111 (242)
195 PF03432 Relaxase: Relaxase/Mo 29.1 89 0.0019 22.8 3.7 36 26-61 59-99 (242)
196 PRK09929 hypothetical protein; 28.9 90 0.002 21.1 3.3 21 39-59 56-76 (91)
197 PF08742 C8: C8 domain; Inter 28.8 42 0.00091 20.5 1.6 20 82-101 46-65 (74)
198 PRK14706 glycogen branching en 28.7 1.6E+02 0.0034 26.0 5.6 58 40-99 172-232 (639)
199 PLN02411 12-oxophytodienoate r 28.6 83 0.0018 25.8 3.8 54 42-96 171-228 (391)
200 PRK09441 cytoplasmic alpha-amy 28.6 1.4E+02 0.003 24.8 5.1 60 38-99 24-96 (479)
201 TIGR01703 hybrid_clust hydroxy 28.6 69 0.0015 27.8 3.4 26 25-50 63-88 (522)
202 cd07952 ED_3B_like Uncharacter 28.5 1E+02 0.0023 23.5 4.1 55 46-100 32-97 (256)
203 TIGR03569 NeuB_NnaB N-acetylne 28.3 1.2E+02 0.0027 24.5 4.6 62 38-99 18-91 (329)
204 PLN02591 tryptophan synthase 28.2 97 0.0021 24.1 3.9 42 35-99 92-133 (250)
205 cd04731 HisF The cyclase subun 28.1 77 0.0017 23.5 3.2 27 36-62 27-53 (243)
206 PF12860 PAS_7: PAS fold 28.0 54 0.0012 21.0 2.2 39 61-100 6-55 (115)
207 PRK05290 hybrid cluster protei 28.0 77 0.0017 27.7 3.6 28 23-50 62-89 (546)
208 PLN02428 lipoic acid synthase 28.0 71 0.0015 26.2 3.2 26 33-58 127-155 (349)
209 TIGR02401 trehalose_TreY malto 27.9 1.7E+02 0.0036 27.0 5.8 61 38-99 18-80 (825)
210 KOG2781|consensus 27.9 45 0.00097 26.9 2.0 24 76-99 111-134 (290)
211 TIGR02651 RNase_Z ribonuclease 27.8 76 0.0017 24.0 3.2 23 34-56 243-265 (299)
212 TIGR02649 true_RNase_BN ribonu 27.6 76 0.0017 24.4 3.2 26 34-61 245-270 (303)
213 cd04735 OYE_like_4_FMN Old yel 27.6 72 0.0016 25.5 3.2 54 42-96 150-207 (353)
214 PRK10426 alpha-glucosidase; Pr 27.4 62 0.0013 28.4 2.9 30 30-59 262-292 (635)
215 PF02900 LigB: Catalytic LigB 27.4 85 0.0019 23.8 3.4 61 39-99 31-112 (272)
216 COG2179 Predicted hydrolase of 27.4 92 0.002 23.5 3.5 60 39-101 52-111 (175)
217 PRK07945 hypothetical protein; 27.3 1E+02 0.0022 24.7 4.0 30 31-61 106-135 (335)
218 TIGR03531 selenium_SpcS O-phos 27.0 1.7E+02 0.0036 24.7 5.3 47 36-99 189-237 (444)
219 PRK09257 aromatic amino acid a 27.0 1.8E+02 0.004 22.9 5.3 50 35-98 156-206 (396)
220 PRK00055 ribonuclease Z; Revie 27.0 93 0.002 22.7 3.5 24 33-56 208-231 (270)
221 COG0287 TyrA Prephenate dehydr 26.9 38 0.00082 26.7 1.4 36 31-66 141-180 (279)
222 PF10017 Methyltransf_33: Hist 26.9 1E+02 0.0022 21.2 3.4 28 28-55 88-115 (127)
223 PF04909 Amidohydro_2: Amidohy 26.8 70 0.0015 23.0 2.8 44 39-99 88-132 (273)
224 PRK09248 putative hydrolase; V 26.8 76 0.0016 23.7 3.0 26 35-61 18-43 (246)
225 cd05014 SIS_Kpsf KpsF-like pro 26.7 83 0.0018 20.5 2.9 33 32-64 57-89 (128)
226 smart00518 AP2Ec AP endonuclea 26.5 77 0.0017 23.6 3.0 17 39-55 87-103 (273)
227 TIGR01302 IMP_dehydrog inosine 26.3 1.1E+02 0.0023 25.5 4.1 56 36-99 274-329 (450)
228 PRK02261 methylaspartate mutas 26.2 2.2E+02 0.0047 19.9 5.1 25 32-56 37-61 (137)
229 PRK05799 coproporphyrinogen II 26.1 1.5E+02 0.0032 23.6 4.7 59 31-99 92-150 (374)
230 COG2102 Predicted ATPases of P 26.0 1.8E+02 0.0039 22.7 5.0 59 29-99 114-175 (223)
231 PLN02721 threonine aldolase 26.0 1.8E+02 0.0039 22.0 5.0 50 36-99 118-173 (353)
232 COG2078 AMMECR1 Uncharacterize 25.8 57 0.0012 25.2 2.2 20 82-101 152-171 (203)
233 PRK01033 imidazole glycerol ph 25.6 89 0.0019 23.9 3.2 45 35-93 29-73 (258)
234 PRK14705 glycogen branching en 25.5 2E+02 0.0042 27.7 5.9 59 39-99 769-830 (1224)
235 PRK04161 tagatose 1,6-diphosph 25.1 88 0.0019 25.8 3.2 66 22-99 94-159 (329)
236 cd04729 NanE N-acetylmannosami 25.1 1.8E+02 0.0039 21.3 4.7 39 41-97 84-122 (219)
237 PF00586 AIRS: AIR synthase re 25.0 29 0.00064 22.1 0.4 17 83-99 74-90 (96)
238 PF08963 DUF1878: Protein of u 25.0 54 0.0012 23.1 1.7 63 31-99 36-98 (113)
239 PF07498 Rho_N: Rho terminatio 24.9 63 0.0014 18.3 1.8 17 86-102 7-23 (43)
240 cd07567 biotinidase_like bioti 24.9 2.3E+02 0.005 22.3 5.5 59 40-98 31-102 (299)
241 PF02225 PA: PA domain; Inter 24.9 65 0.0014 20.1 2.0 19 39-57 47-65 (101)
242 PF11470 TUG-UBL1: GLUT4 regul 24.9 65 0.0014 20.2 2.0 25 76-100 10-34 (65)
243 cd06450 DOPA_deC_like DOPA dec 24.9 2.8E+02 0.0062 20.9 5.9 17 83-99 164-180 (345)
244 TIGR03572 WbuZ glycosyl amidat 24.9 97 0.0021 22.8 3.2 25 35-59 29-53 (232)
245 cd02124 PA_PoS1_like PA_PoS1_l 24.8 91 0.002 21.6 2.9 21 39-59 69-89 (129)
246 COG0174 GlnA Glutamine synthet 24.7 3.1E+02 0.0068 23.3 6.5 67 32-100 101-182 (443)
247 TIGR00097 HMP-P_kinase phospho 24.6 1.7E+02 0.0036 21.8 4.5 63 37-99 151-222 (254)
248 PF07862 Nif11: Nitrogen fixat 24.5 66 0.0014 18.3 1.8 28 24-52 16-43 (49)
249 PRK15450 signal transduction p 24.4 46 0.001 22.3 1.3 23 27-49 63-85 (85)
250 TIGR02100 glgX_debranch glycog 24.4 1.4E+02 0.003 26.5 4.6 58 41-99 189-260 (688)
251 cd07582 nitrilase_4 Uncharacte 24.2 1.8E+02 0.004 22.1 4.8 59 40-98 28-91 (294)
252 cd01299 Met_dep_hydrolase_A Me 24.1 2.4E+02 0.0051 21.6 5.4 53 39-99 123-175 (342)
253 cd02419 Peptidase_C39C A sub-f 24.1 2.1E+02 0.0045 18.4 4.8 43 12-54 18-62 (127)
254 cd07362 HPCD_like Class III ex 23.9 2.4E+02 0.0053 21.8 5.4 62 39-100 33-109 (272)
255 PRK02113 putative hydrolase; P 23.9 1.4E+02 0.003 22.1 3.9 28 31-58 196-223 (252)
256 PTZ00170 D-ribulose-5-phosphat 23.8 95 0.0021 23.4 3.1 20 36-55 75-94 (228)
257 COG2503 Predicted secreted aci 23.7 13 0.00029 29.8 -1.7 41 29-71 105-148 (274)
258 COG2136 IMP4 Predicted exosome 23.7 1.7E+02 0.0038 22.0 4.4 54 3-62 9-64 (191)
259 cd08560 GDPD_EcGlpQ_like_1 Gly 23.7 2.6E+02 0.0056 22.8 5.7 61 37-100 279-341 (356)
260 PLN02978 pyridoxal kinase 23.7 98 0.0021 24.2 3.2 25 38-62 174-198 (308)
261 PF02449 Glyco_hydro_42: Beta- 23.6 46 0.00099 26.5 1.4 54 31-98 2-61 (374)
262 PF08819 DUF1802: Domain of un 23.6 72 0.0016 23.8 2.3 33 39-71 4-49 (177)
263 PF08671 SinI: Anti-repressor 23.6 58 0.0013 17.7 1.4 10 39-48 3-12 (30)
264 cd01937 ribokinase_group_D Rib 23.6 1E+02 0.0023 22.4 3.2 30 37-67 171-200 (254)
265 cd07197 nitrilase Nitrilase su 23.5 2.1E+02 0.0045 20.5 4.7 57 39-98 21-77 (253)
266 cd07578 nitrilase_1_R1 First n 23.5 1.5E+02 0.0032 22.0 4.0 56 40-98 24-79 (258)
267 PRK11633 cell division protein 23.4 1.7E+02 0.0037 22.6 4.4 55 37-101 162-219 (226)
268 cd01051 Mn_catalase Manganese 23.4 2.9E+02 0.0062 19.8 7.0 22 4-25 15-37 (156)
269 PLN02905 beta-amylase 23.4 1.7E+02 0.0038 26.5 4.9 55 39-100 578-632 (702)
270 cd02930 DCR_FMN 2,4-dienoyl-Co 23.3 1.2E+02 0.0027 24.1 3.8 54 42-96 143-200 (353)
271 PRK03705 glycogen debranching 23.3 2.2E+02 0.0047 25.3 5.5 58 41-99 184-257 (658)
272 PHA00497 pol RNA-dependent RNA 23.2 73 0.0016 28.6 2.6 27 45-71 115-141 (673)
273 cd02420 Peptidase_C39D A sub-f 23.1 2.2E+02 0.0047 18.3 4.6 41 12-52 18-60 (125)
274 PRK04452 acetyl-CoA decarbonyl 23.1 92 0.002 25.3 3.0 23 35-57 74-97 (319)
275 PRK06427 bifunctional hydroxy- 23.1 1.9E+02 0.0041 21.5 4.5 62 38-99 159-230 (266)
276 PRK05678 succinyl-CoA syntheta 23.0 2E+02 0.0044 22.8 4.9 34 45-99 85-118 (291)
277 CHL00139 rpl18 ribosomal prote 22.9 60 0.0013 22.3 1.7 41 39-99 68-108 (109)
278 COG3033 TnaA Tryptophanase [Am 22.8 2E+02 0.0043 24.7 5.0 50 35-99 168-221 (471)
279 COG0352 ThiE Thiamine monophos 22.8 1.1E+02 0.0024 23.3 3.3 44 39-99 24-67 (211)
280 COG0075 Serine-pyruvate aminot 22.8 2.5E+02 0.0054 23.4 5.5 48 34-98 115-162 (383)
281 PLN02361 alpha-amylase 22.7 2.6E+02 0.0057 23.2 5.7 53 42-99 35-91 (401)
282 cd02932 OYE_YqiM_FMN Old yello 22.6 1.3E+02 0.0028 23.7 3.7 54 42-96 160-217 (336)
283 PF02581 TMP-TENI: Thiamine mo 22.6 1.6E+02 0.0034 21.0 3.9 49 34-94 101-149 (180)
284 PRK13398 3-deoxy-7-phosphohept 22.5 2.3E+02 0.0049 22.2 5.0 51 39-100 44-94 (266)
285 cd04795 SIS SIS domain. SIS (S 22.5 1.3E+02 0.0028 17.9 3.0 25 32-56 57-81 (87)
286 PF02153 PDH: Prephenate dehyd 22.5 41 0.00088 25.6 0.8 26 39-64 140-165 (258)
287 cd04816 PA_SaNapH_like PA_SaNa 22.4 92 0.002 20.9 2.5 22 39-60 57-78 (122)
288 COG0134 TrpC Indole-3-glycerol 22.4 1.1E+02 0.0024 24.2 3.2 41 22-62 50-94 (254)
289 COG2039 Pcp Pyrrolidone-carbox 22.4 64 0.0014 25.0 1.9 19 83-101 114-132 (207)
290 cd01760 RBD Ubiquitin-like dom 22.3 88 0.0019 19.9 2.3 25 76-100 13-37 (72)
291 PF00786 PBD: P21-Rho-binding 22.2 66 0.0014 19.4 1.6 14 38-51 27-40 (59)
292 TIGR03381 agmatine_aguB N-carb 22.2 3.2E+02 0.007 20.2 5.7 59 39-98 22-80 (279)
293 PRK00912 ribonuclease P protei 22.2 1.1E+02 0.0023 22.9 3.0 26 35-61 15-40 (237)
294 PF10191 COG7: Golgi complex c 22.2 70 0.0015 28.7 2.3 21 29-49 3-23 (766)
295 cd02929 TMADH_HD_FMN Trimethyl 22.1 1.5E+02 0.0033 24.0 4.1 54 42-96 156-213 (370)
296 PLN02801 beta-amylase 22.0 2.2E+02 0.0048 25.0 5.2 51 39-99 330-380 (517)
297 PLN02450 1-aminocyclopropane-1 22.0 2E+02 0.0044 23.7 4.9 48 37-99 174-226 (468)
298 PRK06806 fructose-bisphosphate 22.0 76 0.0016 25.0 2.3 44 39-99 87-130 (281)
299 TIGR00735 hisF imidazoleglycer 21.9 1.2E+02 0.0025 23.0 3.2 23 36-58 30-52 (254)
300 PF05368 NmrA: NmrA-like famil 21.9 1.1E+02 0.0023 22.1 2.9 23 39-61 84-106 (233)
301 TIGR01949 AroFGH_arch predicte 21.9 98 0.0021 23.5 2.8 17 84-100 123-139 (258)
302 PRK08208 coproporphyrinogen II 21.8 1.3E+02 0.0029 24.7 3.7 59 31-99 134-192 (430)
303 PRK05481 lipoyl synthase; Prov 21.7 1.1E+02 0.0025 23.9 3.2 28 34-61 78-108 (289)
304 COG0223 Fmt Methionyl-tRNA for 21.7 1.8E+02 0.0039 23.6 4.4 29 29-57 59-87 (307)
305 PRK08599 coproporphyrinogen II 21.7 2.4E+02 0.0052 22.4 5.1 59 31-99 93-151 (377)
306 TIGR00060 L18_bact ribosomal p 21.5 68 0.0015 22.4 1.7 41 39-99 73-113 (114)
307 PF01261 AP_endonuc_2: Xylose 21.3 94 0.002 21.3 2.4 53 39-98 74-126 (213)
308 PF05889 SLA_LP_auto_ag: Solub 21.2 1.4E+02 0.003 25.1 3.8 47 38-99 141-187 (389)
309 PF00724 Oxidored_FMN: NADH:fl 21.2 73 0.0016 25.3 2.1 53 42-95 155-211 (341)
310 PRK10415 tRNA-dihydrouridine s 21.1 1.3E+02 0.0029 23.8 3.5 31 31-61 144-174 (321)
311 cd02127 PA_hPAP21_like PA_hPAP 21.1 95 0.0021 21.2 2.4 19 42-60 51-69 (118)
312 PRK08609 hypothetical protein; 21.1 1.4E+02 0.0031 25.8 3.9 27 32-58 345-371 (570)
313 cd02931 ER_like_FMN Enoate red 21.0 1.7E+02 0.0037 23.8 4.2 53 43-96 157-214 (382)
314 cd02423 Peptidase_C39G A sub-f 20.9 2.4E+02 0.0052 18.0 5.4 43 12-54 18-63 (129)
315 PF01380 SIS: SIS domain SIS d 20.5 95 0.0021 20.0 2.2 33 31-63 62-94 (131)
316 PF11684 DUF3280: Protein of u 20.5 91 0.002 22.3 2.2 23 39-61 70-92 (140)
317 cd02122 PA_GRAIL_like PA _GRAI 20.5 96 0.0021 21.8 2.3 21 40-60 75-95 (138)
318 cd07908 Mn_catalase_like Manga 20.4 67 0.0014 22.2 1.5 47 5-51 9-77 (154)
319 cd07573 CPA N-carbamoylputresc 20.4 2.8E+02 0.006 20.7 5.0 58 39-98 22-80 (284)
320 PF01212 Beta_elim_lyase: Beta 20.3 1.1E+02 0.0025 23.9 2.9 50 34-99 104-160 (290)
321 PRK13396 3-deoxy-7-phosphohept 20.3 2.2E+02 0.0047 23.5 4.7 50 39-99 118-167 (352)
322 TIGR03537 DapC succinyldiamino 20.2 2.3E+02 0.005 21.8 4.7 17 82-98 154-170 (350)
323 cd02072 Glm_B12_BD B12 binding 20.1 3.2E+02 0.007 19.2 5.1 46 34-99 35-80 (128)
324 PF14117 DUF4287: Domain of un 20.1 87 0.0019 19.5 1.8 16 34-49 13-28 (61)
No 1
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=100.00 E-value=1.5e-38 Score=257.17 Aligned_cols=94 Identities=52% Similarity=0.913 Sum_probs=90.2
Q ss_pred CCChHHHHHHHHhCCCCCChHHhhccCCCCCCCHHHHHHHHHHcCCCeEEEeeeecCCcccCCCCCCCCcccccCCCCCc
Q psy1381 5 NPNSTVTKFMERNYKPGFTYQDFAKDFTAEFFDANHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRD 84 (102)
Q Consensus 5 ~~~~~y~~~~~~~~~~~~~Y~~~a~~F~p~~fDp~~Wa~l~k~aGakyvvlTtKHHdGF~lW~S~~~~~~~s~~~~p~rD 84 (102)
.+++...++|.++|||.++|++++++|+|++|||++||+++|+|||||+|||||||||||||||+++ +||+++.+|+||
T Consensus 50 ~~~~~~~~~~~~~~~~~~~Y~~~~~~F~p~~fD~~~Wa~~~k~AGakY~vlTaKHHDGF~lw~S~~t-~~n~~~~~pkrD 128 (384)
T smart00812 50 QPNSPEYKHHIKNYGPEFGYKDFAPQFTAEKFDPEEWADLFKKAGAKYVVLTAKHHDGFCLWDSKYS-NWNAVDTGPKRD 128 (384)
T ss_pred CCCCcHHHHHHhccCCcccHHHHHhcCCchhCCHHHHHHHHHHcCCCeEEeeeeecCCccccCCCCC-CCcccCCCCCcc
Confidence 3567788999999999999999999999999999999999999999999999999999999999999 899999999999
Q ss_pred hHHHHHHHHhhcCCC
Q psy1381 85 LVDYTFGNWFTGGSP 99 (102)
Q Consensus 85 iv~el~~a~~~~Gl~ 99 (102)
||+||++|||++||.
T Consensus 129 iv~el~~A~rk~Glk 143 (384)
T smart00812 129 LVGELADAVRKRGLK 143 (384)
T ss_pred hHHHHHHHHHHcCCe
Confidence 999999999999985
No 2
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=100.00 E-value=2.1e-36 Score=240.09 Aligned_cols=85 Identities=46% Similarity=0.793 Sum_probs=66.7
Q ss_pred HHHhCCCCCChHHhhccCCCCCCCHHHHHHHHHHcCCCeEEEeeeecCCcccCCCCCCCCcccccCCCCCchHHHHHHHH
Q psy1381 14 MERNYKPGFTYQDFAKDFTAEFFDANHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVDYTFGNW 93 (102)
Q Consensus 14 ~~~~~~~~~~Y~~~a~~F~p~~fDp~~Wa~l~k~aGakyvvlTtKHHdGF~lW~S~~~~~~~s~~~~p~rDiv~el~~a~ 93 (102)
+.+..++..+|.++++.|+|++|||+|||++||+|||||+|||||||||||||||+++ +||+++.+++||||+||++||
T Consensus 69 ~~~~~~~~~~Y~~~~~~F~p~~fD~dqW~~~ak~aGakY~VlTakHHDGF~LW~S~~t-~~~v~~~~~krDiv~El~~A~ 147 (346)
T PF01120_consen 69 MGSYKIPEEEYGDFAKQFNPTKFDADQWAKLAKDAGAKYVVLTAKHHDGFCLWPSKYT-DYNVVNSGPKRDIVGELADAC 147 (346)
T ss_dssp HHHHTCCCSCGGGHGGG---TT--HHHHHHHHHHTT-SEEEEEEE-TT--BSS--TT--SSBGGGGGGTS-HHHHHHHHH
T ss_pred ccccccchhhHhhhhhhCCcccCCHHHHHHHHHHcCCCEEEeehhhcCccccCCCCCC-cccccCCCCCCCHHHHHHHHH
Confidence 3345689999999999999999999999999999999999999999999999999999 699999999999999999999
Q ss_pred hhcCCC
Q psy1381 94 FTGGSP 99 (102)
Q Consensus 94 ~~~Gl~ 99 (102)
|++||.
T Consensus 148 rk~Glk 153 (346)
T PF01120_consen 148 RKYGLK 153 (346)
T ss_dssp HHTT-E
T ss_pred HHcCCe
Confidence 999984
No 3
>KOG3340|consensus
Probab=100.00 E-value=4.6e-35 Score=236.13 Aligned_cols=94 Identities=55% Similarity=1.022 Sum_probs=90.6
Q ss_pred CChHHHHHHHHhCCCCCChHHhhccCCCCCCCHHHHHHHHHHcCCCeEEEeeeecCCcccCCCCCCCCcccccCCCCCch
Q psy1381 6 PNSTVTKFMERNYKPGFTYQDFAKDFTAEFFDANHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDL 85 (102)
Q Consensus 6 ~~~~y~~~~~~~~~~~~~Y~~~a~~F~p~~fDp~~Wa~l~k~aGakyvvlTtKHHdGF~lW~S~~~~~~~s~~~~p~rDi 85 (102)
..+.|++||.+||+|.++|++++++|+++.|+|.|||++++++||||||||+|||||||||||+++++|||++.||+|||
T Consensus 72 ~~P~yv~Fmd~ny~P~fty~df~~~Fta~~fnA~qWa~lfq~sGaryvVLTsKHHeGFtlWPS~~SwnwNS~dvgpkrDi 151 (454)
T KOG3340|consen 72 FGPKYVTFMDDNYKPGFTYADFASQFTATLFNASQWADLFQDSGARYVVLTSKHHEGFTLWPSEYSWNWNSMDVGPKRDI 151 (454)
T ss_pred CCCceeeeccccCCCCCchhhchhhhhhhhcCHHHHHHHHHhcCceEEEEeecccCceecCCCcCcccccccccCccccH
Confidence 34569999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCC
Q psy1381 86 VDYTFGNWFTGGSP 99 (102)
Q Consensus 86 v~el~~a~~~~Gl~ 99 (102)
|+||+.|.|+++|-
T Consensus 152 V~EL~~A~rk~dir 165 (454)
T KOG3340|consen 152 VGELASAIRKRDIR 165 (454)
T ss_pred HHHHHHHHHhcCcc
Confidence 99999999999873
No 4
>COG3669 Alpha-L-fucosidase [Carbohydrate transport and metabolism]
Probab=99.98 E-value=1.9e-33 Score=229.16 Aligned_cols=92 Identities=41% Similarity=0.763 Sum_probs=87.9
Q ss_pred ChHHHHHHHHhCCCC--CChHHhhccCCCCCCCHHHHHHHHHHcCCCeEEEeeeecCCcccCCCCCCCCcccccCCCCCc
Q psy1381 7 NSTVTKFMERNYKPG--FTYQDFAKDFTAEFFDANHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRD 84 (102)
Q Consensus 7 ~~~y~~~~~~~~~~~--~~Y~~~a~~F~p~~fDp~~Wa~l~k~aGakyvvlTtKHHdGF~lW~S~~~~~~~s~~~~p~rD 84 (102)
-++..+||-+||+.. ++|.+++++||||+|||.+||+++|+|||||+|+|+|||||||||||++| .||+++.|||||
T Consensus 23 ~~~~~~fh~nT~~dq~~f~~~~f~~~Ftae~wDP~eWar~fK~aGAKyvilvakHHDGFaLw~t~ys-~wnsvk~GpKrD 101 (430)
T COG3669 23 GSPFYHFHPNTYGDQEWFGGQEFPPRFTAENWDPREWARLFKEAGAKYVILVAKHHDGFALWPTDYS-VWNSVKRGPKRD 101 (430)
T ss_pred CCceEEeccccccCcccccccccccccCcccCCHHHHHHHHHHcCCcEEEEeeeecCCeeecccccc-cccccccCCccc
Confidence 466778999999876 99999999999999999999999999999999999999999999999999 899999999999
Q ss_pred hHHHHHHHHhhcCCC
Q psy1381 85 LVDYTFGNWFTGGSP 99 (102)
Q Consensus 85 iv~el~~a~~~~Gl~ 99 (102)
||+|+++|.|.+||-
T Consensus 102 lvgela~Avr~qGL~ 116 (430)
T COG3669 102 LVGELAKAVREQGLR 116 (430)
T ss_pred HHHHHHHHHHHcCCe
Confidence 999999999999984
No 5
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=99.15 E-value=9.4e-11 Score=83.23 Aligned_cols=59 Identities=25% Similarity=0.438 Sum_probs=53.7
Q ss_pred CHHHHHHHHHHcCCCeEEEeeeecCCcccCCCCCCCCcccccCCCCCchHHHHHHHHhhcCCC
Q psy1381 37 DANHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVDYTFGNWFTGGSP 99 (102)
Q Consensus 37 Dp~~Wa~l~k~aGakyvvlTtKHHdGF~lW~S~~~~~~~s~~~~p~rDiv~el~~a~~~~Gl~ 99 (102)
||++|++.++++|+.-+++-+|=|.|+|.|||++. .++.+-++||++|++++|++.||.
T Consensus 1 D~~~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~----~~hp~L~~Dllge~v~a~h~~Gir 59 (132)
T PF14871_consen 1 DPEQFVDTLKEAHVNSITIFAKCHGGYAYYPTKVG----PRHPGLKRDLLGEQVEACHERGIR 59 (132)
T ss_pred CHHHHHHHHHHhCCCEEEEEcccccEEEEccCCCC----cCCCCCCcCHHHHHHHHHHHCCCE
Confidence 89999999999999999999999999999999995 235555799999999999999984
No 6
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=97.14 E-value=0.0014 Score=52.04 Aligned_cols=59 Identities=22% Similarity=0.365 Sum_probs=48.5
Q ss_pred HHHHHHHHHcCCCeEEEeeeecCCcccCCCCCCCCccccc-----CCCCCchHHHHHHHHhhcCCC
Q psy1381 39 NHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMD-----IGPKRDLVDYTFGNWFTGGSP 99 (102)
Q Consensus 39 ~~Wa~l~k~aGakyvvlTtKHHdGF~lW~S~~~~~~~s~~-----~~p~rDiv~el~~a~~~~Gl~ 99 (102)
++.++.++++|+.-|++-++- .|.+||+|++- +|.... ..|+.|.+..+++.|+++||.
T Consensus 22 ~~~l~~l~~~~~N~V~~qVr~-~gda~Y~S~~~-p~s~~~~g~~~~~pg~DpL~~~I~eaHkrGle 85 (311)
T PF02638_consen 22 DEMLDDLKSAGFNAVFVQVRP-RGDALYPSDIE-PWSGYLTGKQGKDPGFDPLEFMIEEAHKRGLE 85 (311)
T ss_pred HHHHHHHHHcCCCEEEEEEEe-CcEEEeccccc-ccccccCCCCCCCCCccHHHHHHHHHHHcCCE
Confidence 677788999999999999997 69999999996 343221 235789999999999999984
No 7
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=96.98 E-value=0.0044 Score=45.34 Aligned_cols=63 Identities=17% Similarity=0.302 Sum_probs=51.8
Q ss_pred CCCCHHHHHHH---HHHcCCCeEEEeeeecCCcccCCCCCCCCcccccCCCCCchHHHHHHHHhhcCCC
Q psy1381 34 EFFDANHWADI---LASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVDYTFGNWFTGGSP 99 (102)
Q Consensus 34 ~~fDp~~Wa~l---~k~aGakyvvlTtKHHdGF~lW~S~~~~~~~s~~~~p~rDiv~el~~a~~~~Gl~ 99 (102)
.++++++|-+. +++.|+++||+.--=..|...+||+.. +.. -.-+..|+|..+.++|.+.|+.
T Consensus 15 ~~~~~~~W~~~~~~m~~~GidtlIlq~~~~~~~~~yps~~~-~~~--~~~~~~d~l~~~L~~A~~~Gmk 80 (166)
T PF14488_consen 15 QNWTPAQWREEFRAMKAIGIDTLILQWTGYGGFAFYPSKLS-PGG--FYMPPVDLLEMILDAADKYGMK 80 (166)
T ss_pred cCCCHHHHHHHHHHHHHcCCcEEEEEEeecCCcccCCcccc-Ccc--ccCCcccHHHHHHHHHHHcCCE
Confidence 68999999765 578899999999888888999999983 222 2236899999999999999973
No 8
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.79 E-value=0.23 Score=41.69 Aligned_cols=68 Identities=18% Similarity=0.240 Sum_probs=53.5
Q ss_pred cCCCCCCCHHHH---HHHHHHcCCCeEEEeeeecCCcccCCCCCCCCccccc-----CCCCCchHHHHHHHHhhcCCC
Q psy1381 30 DFTAEFFDANHW---ADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMD-----IGPKRDLVDYTFGNWFTGGSP 99 (102)
Q Consensus 30 ~F~p~~fDp~~W---a~l~k~aGakyvvlTtKHHdGF~lW~S~~~~~~~s~~-----~~p~rDiv~el~~a~~~~Gl~ 99 (102)
.+....+++.+. ++.++.+|+.-+.+..+ -+|.|+|+|++- .|.... ..++.|.++++++.++++||.
T Consensus 55 ~~~~v~~~~~el~~~ld~l~~ln~NTv~~qV~-~~G~~lypS~~~-p~s~~~~~~~~~~~g~DpLa~~I~~AHkr~l~ 130 (418)
T COG1649 55 ADSRVLFQRQELKDILDDLQKLNFNTVYPQVW-NDGDALYPSAVL-PWSDGLPGVLGVDPGYDPLAFVIAEAHKRGLE 130 (418)
T ss_pred CCCcccccHHHHHHHHHHHHHcCCceeEEEEe-cCcccccccccc-ccccCcCcccCCCCCCChHHHHHHHHHhcCCe
Confidence 455667777554 55678899999988887 689999999997 443332 345899999999999999996
No 9
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=93.27 E-value=0.24 Score=40.02 Aligned_cols=57 Identities=16% Similarity=0.259 Sum_probs=47.0
Q ss_pred HHHHHHHHHcCCCeEEEeeeecCCcccCCCCCCCCcccccCCCCC---chHHHHHHHHhhcCC
Q psy1381 39 NHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKR---DLVDYTFGNWFTGGS 98 (102)
Q Consensus 39 ~~Wa~l~k~aGakyvvlTtKHHdGF~lW~S~~~~~~~s~~~~p~r---Div~el~~a~~~~Gl 98 (102)
+..++++++.|...+|+..|=-+|...|+|+... ....+..+ .=+++|++.|+++||
T Consensus 16 ~~~~~~i~~t~lNavVIDvKdd~G~i~y~s~~~~---~~~~ga~~~~i~D~~~l~~~l~e~gI 75 (316)
T PF13200_consen 16 DKLLDLIKRTELNAVVIDVKDDDGNITYDSQVPL---AREIGAVKPYIKDLKALVKKLKEHGI 75 (316)
T ss_pred HHHHHHHHhcCCceEEEEEecCCceEEecCCCch---hhhcccccccccCHHHHHHHHHHCCC
Confidence 6889999999999999999999999999999872 22333322 337899999999997
No 10
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=91.51 E-value=0.44 Score=37.28 Aligned_cols=54 Identities=15% Similarity=0.129 Sum_probs=45.5
Q ss_pred CCCCHHHHHHHHHHcCCCeEEEeeeecCCcccCCCCCCCCcccccCCCCCchHHHHHHHHhhcCCC
Q psy1381 34 EFFDANHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVDYTFGNWFTGGSP 99 (102)
Q Consensus 34 ~~fDp~~Wa~l~k~aGakyvvlTtKHHdGF~lW~S~~~~~~~s~~~~p~rDiv~el~~a~~~~Gl~ 99 (102)
..++|-++.++++++|+.-+|+=|-+-||-.|++-- ..+-+.+|++.||++||-
T Consensus 129 ~~~~p~~l~~~a~~aG~~gvMlDTa~Kdg~~L~d~~------------~~~~L~~Fv~~ar~~gL~ 182 (235)
T PF04476_consen 129 GSISPLDLPEIAAEAGFDGVMLDTADKDGGSLFDHL------------SEEELAEFVAQARAHGLM 182 (235)
T ss_pred cCCCHHHHHHHHHHcCCCEEEEecccCCCCchhhcC------------CHHHHHHHHHHHHHccch
Confidence 457899999999999999999999999987765421 256789999999999973
No 11
>PRK13363 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=90.83 E-value=0.73 Score=37.44 Aligned_cols=82 Identities=10% Similarity=0.087 Sum_probs=57.7
Q ss_pred CCCCChHHhhccC---------CCCCCCH---------HHHHHHHHHcCCCeEEEeeeec---------CCcccCCCCCC
Q psy1381 19 KPGFTYQDFAKDF---------TAEFFDA---------NHWADILASSGAKYVVLTSKHH---------EGYTLWPSKYA 71 (102)
Q Consensus 19 ~~~~~Y~~~a~~F---------~p~~fDp---------~~Wa~l~k~aGakyvvlTtKHH---------dGF~lW~S~~~ 71 (102)
|..++|+++...= +|+.-+- +++++.++++...-+|+++.|| +.||+...+.-
T Consensus 40 ~~~~~~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~a~~~~~~~i~~~~PDvlViispdh~~~F~~~~~p~f~I~~~~~~ 119 (335)
T PRK13363 40 GRPWTYDALVAERAPENLEEQITPEERTERHAACEAAIERMRDAIEAARIDVAVIVGNDQMELFTTDNNPAFAIYYGETI 119 (335)
T ss_pred CCCCCHHHHHHhhcchhhhcccCcccccchHHHHHHHHHHHHHHHHHhCCCEEEEEcCCchhhcccccCCceEEeeccee
Confidence 6788999886532 3332221 6788889999999999999999 77888877663
Q ss_pred CC-c------------c-----------cccCCCCCchHHHHHHHHhhcCCCC
Q psy1381 72 FS-W------------N-----------SMDIGPKRDLVDYTFGNWFTGGSPG 100 (102)
Q Consensus 72 ~~-~------------~-----------s~~~~p~rDiv~el~~a~~~~Gl~~ 100 (102)
.. + . ........+|..++++.+.+.|++-
T Consensus 120 ~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~gd~eLA~~I~~~l~~~G~d~ 172 (335)
T PRK13363 120 RNNPASREKLPSLPPGVKAAMPGYMPDAETTYPVVPELARHMIRRLVDDGFDI 172 (335)
T ss_pred ccchhhccccccccccccccccccCCCCCcCCCCCHHHHHHHHHHHHHcCCCe
Confidence 11 0 0 0112225789999999999999974
No 12
>PRK02227 hypothetical protein; Provisional
Probab=86.87 E-value=1.2 Score=34.81 Aligned_cols=52 Identities=13% Similarity=0.109 Sum_probs=42.0
Q ss_pred CCCHHHHHHHHHHcCCCeEEEeeeecCCcccCCCCCCCCcccccCCCCCchHHHHHHHHhhcCC
Q psy1381 35 FFDANHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVDYTFGNWFTGGS 98 (102)
Q Consensus 35 ~fDp~~Wa~l~k~aGakyvvlTtKHHdGF~lW~S~~~~~~~s~~~~p~rDiv~el~~a~~~~Gl 98 (102)
..+|..|.++++++|+..+||=|---||-.|++- -..+-+.+|++.||++||
T Consensus 130 ~~~~~~l~~~a~~aGf~g~MlDTa~Kdg~~Lfd~------------l~~~~L~~Fv~~ar~~Gl 181 (238)
T PRK02227 130 SVSPLSLPAIAADAGFDGAMLDTAIKDGKSLFDH------------MDEEELAEFVAEARSHGL 181 (238)
T ss_pred CCChHHHHHHHHHcCCCEEEEecccCCCcchHhh------------CCHHHHHHHHHHHHHccc
Confidence 3488999999999999999997777776655431 135789999999999997
No 13
>smart00642 Aamy Alpha-amylase domain.
Probab=83.50 E-value=3.5 Score=29.76 Aligned_cols=57 Identities=12% Similarity=0.043 Sum_probs=35.2
Q ss_pred HHHHHcCCCeEEEeeeecCCcc-cCCCCCC-CCcccccCC-CCCchHHHHHHHHhhcCCC
Q psy1381 43 DILASSGAKYVVLTSKHHEGYT-LWPSKYA-FSWNSMDIG-PKRDLVDYTFGNWFTGGSP 99 (102)
Q Consensus 43 ~l~k~aGakyvvlTtKHHdGF~-lW~S~~~-~~~~s~~~~-p~rDiv~el~~a~~~~Gl~ 99 (102)
+-+++.|++.|.|+--+..+-. .+...+. .+|..++.. ...+=+++|+++|+++||-
T Consensus 26 ~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~ 85 (166)
T smart00642 26 DYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIK 85 (166)
T ss_pred HHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCE
Confidence 3589999999999876654431 1222221 122222211 1357789999999999984
No 14
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=81.11 E-value=5.2 Score=31.64 Aligned_cols=73 Identities=11% Similarity=0.004 Sum_probs=54.1
Q ss_pred ChHHHHHHHHhCCCCC------------ChHHhhccC-CCCCCCHHHHHHHHHHcCCCeEEEeeeecCCcccCCCCCCCC
Q psy1381 7 NSTVTKFMERNYKPGF------------TYQDFAKDF-TAEFFDANHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFS 73 (102)
Q Consensus 7 ~~~y~~~~~~~~~~~~------------~Y~~~a~~F-~p~~fDp~~Wa~l~k~aGakyvvlTtKHHdGF~lW~S~~~~~ 73 (102)
||++.+-+.+.||+.. .|.=..+.| ..+.++|.+|+..+.+.|++.+++|.-.-||
T Consensus 121 ~p~~v~~~~~~~G~~~IvvsiD~k~~~g~~~Va~~GW~~~t~~~~~e~~~~~~~~g~~eii~TdI~rDG----------- 189 (262)
T PLN02446 121 DLERLKDLVRLVGKQRLVLDLSCRKKDGRYYVVTDRWQKFSDLAVDEETLEFLAAYCDEFLVHGVDVEG----------- 189 (262)
T ss_pred CHHHHHHHHHHhCCCCEEEEEEEEecCCCEEEEECCCcccCCCCHHHHHHHHHHhCCCEEEEEEEcCCC-----------
Confidence 4888888888886521 122234556 4479999999999999999999999999987
Q ss_pred cccccCCCCCchHHHHHHHH
Q psy1381 74 WNSMDIGPKRDLVDYTFGNW 93 (102)
Q Consensus 74 ~~s~~~~p~rDiv~el~~a~ 93 (102)
+..||..++++++.+++
T Consensus 190 ---tl~G~d~el~~~l~~~~ 206 (262)
T PLN02446 190 ---KRLGIDEELVALLGEHS 206 (262)
T ss_pred ---cccCCCHHHHHHHHhhC
Confidence 23456677777776665
No 15
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=77.46 E-value=2.6 Score=30.91 Aligned_cols=57 Identities=12% Similarity=0.009 Sum_probs=36.7
Q ss_pred HHHHHHHcCCCeEEEeeeecCCcccCCCCCC-CCcccccCCC-CCchHHHHHHHHhhcCCC
Q psy1381 41 WADILASSGAKYVVLTSKHHEGYTLWPSKYA-FSWNSMDIGP-KRDLVDYTFGNWFTGGSP 99 (102)
Q Consensus 41 Wa~l~k~aGakyvvlTtKHHdGF~lW~S~~~-~~~~s~~~~p-~rDiv~el~~a~~~~Gl~ 99 (102)
-++-++++|+..|.|+-=...+. +..-+. .+|..++..- ..+=+++|+++|++.||-
T Consensus 9 kLdyl~~lGv~~I~l~Pi~~~~~--~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~ 67 (316)
T PF00128_consen 9 KLDYLKDLGVNAIWLSPIFESPN--GYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIK 67 (316)
T ss_dssp THHHHHHHTESEEEESS-EESSS--STTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCE
T ss_pred hhHHHHHcCCCceeccccccccc--ccccccceeeeccccccchhhhhhhhhhccccccce
Confidence 35678999999999997776543 222221 1333333222 345699999999999983
No 16
>PRK12677 xylose isomerase; Provisional
Probab=76.07 E-value=8.3 Score=31.61 Aligned_cols=54 Identities=17% Similarity=0.087 Sum_probs=38.9
Q ss_pred CCCCHHHHHHHHHHcCCCeEEEeeeecCCcccCCCCCCCCcccccCCCCCchHHHHHHHHhhcCCC
Q psy1381 34 EFFDANHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVDYTFGNWFTGGSP 99 (102)
Q Consensus 34 ~~fDp~~Wa~l~k~aGakyvvlTtKHHdGF~lW~S~~~~~~~s~~~~p~rDiv~el~~a~~~~Gl~ 99 (102)
..+++.++++.++++|++.|-| |.++...|+.... -....++++.++++++||.
T Consensus 29 ~~~~~~E~v~~~a~~Gf~gVEl---h~~~l~p~~~~~~---------~~~~~~~~lk~~l~~~GL~ 82 (384)
T PRK12677 29 PPLDPVEAVHKLAELGAYGVTF---HDDDLVPFGATDA---------ERDRIIKRFKKALDETGLV 82 (384)
T ss_pred CCCCHHHHHHHHHHhCCCEEEe---cccccCCCCCChh---------hhHHHHHHHHHHHHHcCCe
Confidence 4679999999999999999877 5554333332211 0123788999999999986
No 17
>PF10673 DUF2487: Protein of unknown function (DUF2487); InterPro: IPR019615 This entry represents proteins with unknown function that appears to be restricted to Bacillus sp.
Probab=75.56 E-value=3.4 Score=29.97 Aligned_cols=23 Identities=35% Similarity=0.549 Sum_probs=21.2
Q ss_pred HHHHHHHHHcCCCeEEEeeeecC
Q psy1381 39 NHWADILASSGAKYVVLTSKHHE 61 (102)
Q Consensus 39 ~~Wa~l~k~aGakyvvlTtKHHd 61 (102)
..|.+.+++.|+|+|++.|-.++
T Consensus 74 ~~w~~~l~~~GFkhV~~lT~D~~ 96 (142)
T PF10673_consen 74 NDWCEELKESGFKHVFYLTSDSE 96 (142)
T ss_pred HHHHHHHHhcCCcEEEEEecCcc
Confidence 78999999999999999998875
No 18
>cd07366 3MGA_Dioxygenase Subunit B of the Class III Extradiol ring-cleavage dioxygenase, 3-O-Methylgallate Dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 3-O-Methylgallate. 3-O-Methylgallate Dioxygenase catalyzes the oxidization and subsequent ring-opening of 3-O-Methylgallate (3MGA) between carbons 2 and 3. 3-O-Methylgallate Dioxygenase is a key enzyme in the syringate degradation pathway, in which the syringate is first converted to 3-O-Methylgallate by O-demethylase. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which uses a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.
Probab=73.22 E-value=14 Score=29.92 Aligned_cols=82 Identities=9% Similarity=0.143 Sum_probs=55.9
Q ss_pred CCCCChHHhhcc---CCCCCCCH--------------HHHHHHHHHcCCCeEEEeeeecC---------CcccCCCCCCC
Q psy1381 19 KPGFTYQDFAKD---FTAEFFDA--------------NHWADILASSGAKYVVLTSKHHE---------GYTLWPSKYAF 72 (102)
Q Consensus 19 ~~~~~Y~~~a~~---F~p~~fDp--------------~~Wa~l~k~aGakyvvlTtKHHd---------GF~lW~S~~~~ 72 (102)
|..++|+++... ..+....| +++++.++++...=+|+++.||- .||+...+.-.
T Consensus 39 ~~~~~~~~l~~~~~~~~~~~i~~e~~~~~~~~~~~a~~~~~~~i~~~~PDvlVIispDH~~~f~~~~~P~f~I~~~~~~~ 118 (328)
T cd07366 39 GRTWTYEELVAERGDENENQITPEEMAARYARCQAALDRLADFIRAARIDVAVIVGDDQKELFDEALLPAFAIYYGDTIT 118 (328)
T ss_pred CCCCCHHHHHhhcccccccccCccccccchHHHHHHHHHHHHHHHHhCCCEEEEEcCccHhhhccccCCceEEeecceee
Confidence 667889988443 22222222 67888899999999999999875 68887665521
Q ss_pred -Ccc---------------------cccCCCCCchHHHHHHHHhhcCCCC
Q psy1381 73 -SWN---------------------SMDIGPKRDLVDYTFGNWFTGGSPG 100 (102)
Q Consensus 73 -~~~---------------------s~~~~p~rDiv~el~~a~~~~Gl~~ 100 (102)
+.. ........+|..++++.+.+.|++-
T Consensus 119 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~eLA~~I~~~l~~~G~dv 168 (328)
T cd07366 119 NGPRTREQLDRMPPHEAAAGYAPDEARTYPCHPELARHLIKHTVADGFDV 168 (328)
T ss_pred cChhhccccccccccccccccCCCCCcCCCCCHHHHHHHHHHHHHcCCCe
Confidence 100 1112225799999999999999974
No 19
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=71.93 E-value=7.5 Score=29.48 Aligned_cols=38 Identities=13% Similarity=0.184 Sum_probs=28.5
Q ss_pred CCCCHHHHHHHHHHcCCCeEEEeeeecCCcccCCCCCCCCcccccCCCCCchHHHHHHHHhhcCCC
Q psy1381 34 EFFDANHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVDYTFGNWFTGGSP 99 (102)
Q Consensus 34 ~~fDp~~Wa~l~k~aGakyvvlTtKHHdGF~lW~S~~~~~~~s~~~~p~rDiv~el~~a~~~~Gl~ 99 (102)
+=.|+++ ++.+.++||+|+| ++.+ ..++++.|+++|+|
T Consensus 66 TVl~~~~-a~~a~~aGA~Fiv----------------sP~~-----------~~~v~~~~~~~~i~ 103 (204)
T TIGR01182 66 TVLNPEQ-LRQAVDAGAQFIV----------------SPGL-----------TPELAKHAQDHGIP 103 (204)
T ss_pred eCCCHHH-HHHHHHcCCCEEE----------------CCCC-----------CHHHHHHHHHcCCc
Confidence 5678887 8889999999995 2111 23888899999886
No 20
>cd08071 MPN_DUF2466 Mov34/MPN/PAD-1 family. Mov34 DUF2466 (also known as DNA repair protein RadC) domain of unknown function contains the signature JAB1/MPN/Mov34 metalloenzyme (JAMM) motif, EXnHS/THX7SXXD, which is involved in zinc ion coordination and provides the active site for isopeptidase activity. However, to date, the name RadC has been misleading and no function has been determined.
Probab=71.78 E-value=7.5 Score=26.52 Aligned_cols=56 Identities=14% Similarity=0.069 Sum_probs=45.0
Q ss_pred CCCCCCHHHHHHHHHHcCCCeEEEeeeecCCcccCCCCCCCCcccccCCCCCchHHHHHHHHhhcCCC
Q psy1381 32 TAEFFDANHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVDYTFGNWFTGGSP 99 (102)
Q Consensus 32 ~p~~fDp~~Wa~l~k~aGakyvvlTtKHHdGF~lW~S~~~~~~~s~~~~p~rDiv~el~~a~~~~Gl~ 99 (102)
+....+|.+..+.+-..+|..+|++=.|-.|-+ -||+. ...+.+.|.++|+.-|+.
T Consensus 42 ~~~~v~~R~i~~~aL~~~A~~vil~HNHPsG~~-~PS~~-----------D~~~T~~l~~~~~~l~i~ 97 (113)
T cd08071 42 NSSLVHPREIFKEALRHNAAAIILAHNHPSGDP-TPSRE-----------DIELTKRLKEAGELLGIR 97 (113)
T ss_pred cceecCHHHHHHHHHHHhhheEEEEeeCCCCCC-CCCHH-----------HHHHHHHHHHHHHHCCCE
Confidence 566889999999999999999999999988743 22222 367788899999888764
No 21
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=71.72 E-value=7.4 Score=23.35 Aligned_cols=24 Identities=13% Similarity=0.147 Sum_probs=21.2
Q ss_pred CCCCHHHHHHHHHHcCCCeEEEee
Q psy1381 34 EFFDANHWADILASSGAKYVVLTS 57 (102)
Q Consensus 34 ~~fDp~~Wa~l~k~aGakyvvlTt 57 (102)
....|++.++.+++.|++.+.+|=
T Consensus 13 ~~~~~~~~~~~a~~~g~~~v~iTD 36 (67)
T smart00481 13 GALSPEELVKRAKELGLKAIAITD 36 (67)
T ss_pred ccCCHHHHHHHHHHcCCCEEEEee
Confidence 356799999999999999999874
No 22
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=71.48 E-value=6 Score=30.22 Aligned_cols=57 Identities=9% Similarity=0.055 Sum_probs=43.0
Q ss_pred CChHHHHHHHHhCCCCCCh---------HHhhccCCCCCCCHHHHHHHHHHcCCCeEEEeeeecCC
Q psy1381 6 PNSTVTKFMERNYKPGFTY---------QDFAKDFTAEFFDANHWADILASSGAKYVVLTSKHHEG 62 (102)
Q Consensus 6 ~~~~y~~~~~~~~~~~~~Y---------~~~a~~F~p~~fDp~~Wa~l~k~aGakyvvlTtKHHdG 62 (102)
.+++..+=+.+.||+..-. .=..+.|..+..+|.+|++.+.+.|++.+++|.-..||
T Consensus 107 ~~p~~~~~~~~~~g~~~ivvslD~~~~~~v~~~gw~~~~~~~~e~~~~l~~~g~~~ii~tdI~~dG 172 (232)
T PRK13586 107 TNFNLFHDIVREIGSNRVLVSIDYDNTKRVLIRGWKEKSMEVIDGIKKVNELELLGIIFTYISNEG 172 (232)
T ss_pred CCHHHHHHHHHHhCCCCEEEEEEcCCCCEEEccCCeeCCCCHHHHHHHHHhcCCCEEEEecccccc
Confidence 3667777777778653221 11134566678899999999999999999999999998
No 23
>COG0320 LipA Lipoate synthase [Coenzyme metabolism]
Probab=71.06 E-value=4.7 Score=32.78 Aligned_cols=29 Identities=31% Similarity=0.470 Sum_probs=24.3
Q ss_pred CCCCCH---HHHHHHHHHcCCCeEEEeeeecC
Q psy1381 33 AEFFDA---NHWADILASSGAKYVVLTSKHHE 61 (102)
Q Consensus 33 p~~fDp---~~Wa~l~k~aGakyvvlTtKHHd 61 (102)
|...|| +..|++++++|-||||||+---|
T Consensus 94 P~~lD~~EP~rvAeaV~~mgLkyVViTsVdRD 125 (306)
T COG0320 94 PNPLDPDEPERVAEAVKDMGLKYVVITSVDRD 125 (306)
T ss_pred CCCCCCchHHHHHHHHHHhCCCeEEEEeeccc
Confidence 666665 67899999999999999987766
No 24
>cd07367 CarBb CarBb is the B subunit of the Class III Extradiol ring-cleavage dioxygenase, 2-aminophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. CarBb is the B subunit of 2-aminophenol 1,6-dioxygenase (CarB), which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. It is a key enzyme in the carbazole degradation pathway isolated from bacterial strains with carbazole degradation ability. The enzyme is a heterotetramer composed of two A and two B subunits. CarB belongs to the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Although the enzyme was originally isolated as a meta-cleavage enzyme for 2'-aminobiphenyl-2,3-diol involved in carbazole degradation, it has also shown high specificity for 2,3-dihydroxybiphenyl.
Probab=69.58 E-value=13 Score=28.84 Aligned_cols=62 Identities=10% Similarity=0.016 Sum_probs=40.3
Q ss_pred HHHHHHHHHcCCCeEEEeeeec-CC--------cccCCCCCCCCc---cc--ccCCCCCchHHHHHHHHhhcCCCC
Q psy1381 39 NHWADILASSGAKYVVLTSKHH-EG--------YTLWPSKYAFSW---NS--MDIGPKRDLVDYTFGNWFTGGSPG 100 (102)
Q Consensus 39 ~~Wa~l~k~aGakyvvlTtKHH-dG--------F~lW~S~~~~~~---~s--~~~~p~rDiv~el~~a~~~~Gl~~ 100 (102)
+++.+.++++..+-+|+.+-|| .. |++..++.-.++ .. .......+|..++++.+++.|++-
T Consensus 32 ~~~~~~l~~~~Pd~ivvis~dH~~~~~~~~~p~~~i~~~~~~~~~~~~g~p~~~~~gd~~LA~~i~~~l~~~g~~~ 107 (268)
T cd07367 32 AEIGRRVRESRPDVLVVISSDHLFNINLSLQPPFVVGTADSYTPFGDMDIPRELFPGHREFARAFVRQAAEDGFDL 107 (268)
T ss_pred HHHHHHHHHcCCCEEEEEeCchhhhcccccCCceEEeeccccccCCcCCCCcccCCCCHHHHHHHHHHHHHcCCCe
Confidence 4466667777899999999977 33 455433321011 11 112236799999999999999963
No 25
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=68.75 E-value=7.8 Score=29.81 Aligned_cols=32 Identities=22% Similarity=0.205 Sum_probs=29.2
Q ss_pred CCCCCCHHHHHHHHHHcCCCeEEEeeeecCCc
Q psy1381 32 TAEFFDANHWADILASSGAKYVVLTSKHHEGY 63 (102)
Q Consensus 32 ~p~~fDp~~Wa~l~k~aGakyvvlTtKHHdGF 63 (102)
+.+.++|.+|++.+.+.|++.+++|.-..||-
T Consensus 140 ~~~~~~~~e~~~~~~~~g~~~ii~tdI~rdGt 171 (241)
T PRK14114 140 AEEEIDPVSLLKRLKEYGLEEIVHTEIEKDGT 171 (241)
T ss_pred ecCCCCHHHHHHHHHhcCCCEEEEEeechhhc
Confidence 45799999999999999999999999999874
No 26
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=68.48 E-value=8.6 Score=29.51 Aligned_cols=58 Identities=17% Similarity=0.149 Sum_probs=41.6
Q ss_pred ChHHHHHHHHhCCCC----------CChHHh-hccCCCCCCCHHHHHHHHHHcCCCeEEEeeeecCCcc
Q psy1381 7 NSTVTKFMERNYKPG----------FTYQDF-AKDFTAEFFDANHWADILASSGAKYVVLTSKHHEGYT 64 (102)
Q Consensus 7 ~~~y~~~~~~~~~~~----------~~Y~~~-a~~F~p~~fDp~~Wa~l~k~aGakyvvlTtKHHdGF~ 64 (102)
+|+..+-+.+.|+.. -.|..+ .+.|+.+..++.+|++.+.+.|++.+++|.-..||-.
T Consensus 109 ~p~~~~~~~~~~g~~ivvslD~k~~g~~~~v~~~Gw~~~~~~~~~~~~~~~~~g~~~ii~tdI~~dGt~ 177 (243)
T TIGR01919 109 NPWWAAAVIRYGGDIVAVGLDVLEDGEWHTLGNRGWSDGGGDLEVLERLLDSGGCSRVVVTDSKKDGLS 177 (243)
T ss_pred CHHHHHHHHHHccccEEEEEEEecCCceEEEECCCeecCCCcHHHHHHHHHhCCCCEEEEEecCCcccC
Confidence 566666666666432 001122 3345668999999999999999999999999999743
No 27
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=66.69 E-value=11 Score=27.25 Aligned_cols=19 Identities=32% Similarity=0.490 Sum_probs=17.1
Q ss_pred CHHHH-HHHHHHcCCCeEEE
Q psy1381 37 DANHW-ADILASSGAKYVVL 55 (102)
Q Consensus 37 Dp~~W-a~l~k~aGakyvvl 55 (102)
||..| ++.+.++||.++++
T Consensus 63 d~~~~~~~~~~~~Gad~i~v 82 (206)
T TIGR03128 63 DAGEYEAEQAFAAGADIVTV 82 (206)
T ss_pred cchHHHHHHHHHcCCCEEEE
Confidence 88889 99999999998874
No 28
>PF04002 RadC: RadC-like JAB domain; InterPro: IPR001405 This family was named initially with reference to the Escherichia coli radC102 mutation which suggested that RadC was involved in repair of DNA lesions []. However the relevant mutation has subsequently been shown to be in recG, not radC []. In addition all attempts to characterise a radiation-related function for RadC in Streptococcus pneumoniae failed, suggesting that it is not involved in repair of DNA lesions, in recombination during transformation, in gene conversion, nor in mismatch repair [].; PDB: 2QLC_A.
Probab=66.30 E-value=6.3 Score=27.11 Aligned_cols=56 Identities=18% Similarity=0.018 Sum_probs=39.9
Q ss_pred CCCCCCHHHHHHHHHHcCCCeEEEeeeecCCcccCCCCCCCCcccccCCCCCchHHHHHHHHhhcCCC
Q psy1381 32 TAEFFDANHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVDYTFGNWFTGGSP 99 (102)
Q Consensus 32 ~p~~fDp~~Wa~l~k~aGakyvvlTtKHHdGF~lW~S~~~~~~~s~~~~p~rDiv~el~~a~~~~Gl~ 99 (102)
+....+|++.++.+-..+|..+|+.=.|-.|-+ -||+. ..++.+.|.++|+.-|++
T Consensus 47 ~~~~v~~R~I~~~al~~~A~~vIl~HNHPsG~~-~PS~~-----------D~~~T~~L~~~~~~l~I~ 102 (123)
T PF04002_consen 47 DSAPVDPREIFRRALRLNASSVILAHNHPSGDP-EPSDA-----------DIALTRRLKKAARLLGIE 102 (123)
T ss_dssp -GGGCSHHHHHHHHHHTT-SEEEEEEE-TTS---S--HH-----------HHHHHHHHHHHHHHHT-E
T ss_pred CcccccHHHHHHHHHhhCCceEEEEEEcCCCCC-CCCHh-----------HHHHHHHHHHHHHHcCCe
Confidence 445789999999999999999999999999864 22221 256789999999887764
No 29
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=65.70 E-value=10 Score=26.13 Aligned_cols=49 Identities=16% Similarity=0.164 Sum_probs=38.0
Q ss_pred cCCCCCCCHHHHHHHHHHcCCCeEEEeeeecCCcccCCCCCCCCcccccCCCCCchHHHHHHHHhhcCCC
Q psy1381 30 DFTAEFFDANHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVDYTFGNWFTGGSP 99 (102)
Q Consensus 30 ~F~p~~fDp~~Wa~l~k~aGakyvvlTtKHHdGF~lW~S~~~~~~~s~~~~p~rDiv~el~~a~~~~Gl~ 99 (102)
.+..+.+|++.|.++++ |+..|+.+.-+... ..|.++.+.++|+++|++
T Consensus 43 ~~~~d~~d~~~~~~al~--~~d~vi~~~~~~~~-------------------~~~~~~~~~~a~~~~~~~ 91 (183)
T PF13460_consen 43 IIQGDLFDPDSVKAALK--GADAVIHAAGPPPK-------------------DVDAAKNIIEAAKKAGVK 91 (183)
T ss_dssp EEESCTTCHHHHHHHHT--TSSEEEECCHSTTT-------------------HHHHHHHHHHHHHHTTSS
T ss_pred cceeeehhhhhhhhhhh--hcchhhhhhhhhcc-------------------cccccccccccccccccc
Confidence 44567799999999888 89999888832221 178899999999999865
No 30
>TIGR00608 radc DNA repair protein radc. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=65.66 E-value=8.5 Score=29.40 Aligned_cols=57 Identities=12% Similarity=-0.038 Sum_probs=46.2
Q ss_pred CCCCCCCHHHHHHHHHHcCCCeEEEeeeecCCcccCCCCCCCCcccccCCCCCchHHHHHHHHhhcCCC
Q psy1381 31 FTAEFFDANHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVDYTFGNWFTGGSP 99 (102)
Q Consensus 31 F~p~~fDp~~Wa~l~k~aGakyvvlTtKHHdGF~lW~S~~~~~~~s~~~~p~rDiv~el~~a~~~~Gl~ 99 (102)
-+....+|.+..+.+-..+|..+|++=.|-+|-+ .||+. .+++.+.|.++|+--|++
T Consensus 141 ~~~~~v~pReI~~~Al~~~A~~vIlaHNHPSG~~-~PS~~-----------Di~~T~~l~~a~~~lgI~ 197 (218)
T TIGR00608 141 VNHVPVHPREIFKEALKLSASALILAHNHPSGEP-SPSQE-----------DILITERLRKAAELLGIE 197 (218)
T ss_pred CCeEEEcHHHHHHHHHHhhCCeEEEEeecCCCCC-CCCHH-----------HHHHHHHHHHHHHhCCCE
Confidence 3556899999999999999999999999998843 23322 367889999999988874
No 31
>PRK00024 hypothetical protein; Reviewed
Probab=65.12 E-value=7.2 Score=29.75 Aligned_cols=57 Identities=12% Similarity=0.018 Sum_probs=46.3
Q ss_pred CCCCCCCHHHHHHHHHHcCCCeEEEeeeecCCcccCCCCCCCCcccccCCCCCchHHHHHHHHhhcCCC
Q psy1381 31 FTAEFFDANHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVDYTFGNWFTGGSP 99 (102)
Q Consensus 31 F~p~~fDp~~Wa~l~k~aGakyvvlTtKHHdGF~lW~S~~~~~~~s~~~~p~rDiv~el~~a~~~~Gl~ 99 (102)
-+....+|.+..+.+-..+|..+|++=.|-+|-+ .||+. .+++.+.|.++|+--|++
T Consensus 147 ~~~~~v~pRei~~~Al~~~A~~iIl~HNHPSG~~-~PS~~-----------D~~~T~~l~~a~~~l~I~ 203 (224)
T PRK00024 147 LNSSIVHPREIVKRALKLNAAALILAHNHPSGDP-EPSQA-----------DILITKRLKEAGELLGIR 203 (224)
T ss_pred CCeEEEcHHHHHHHHHHhhccceEEEecCCCCCC-CCCHH-----------HHHHHHHHHHHHHhCCCE
Confidence 3566899999999999999999999999998843 23322 367889999999988875
No 32
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=62.93 E-value=26 Score=29.97 Aligned_cols=59 Identities=14% Similarity=-0.075 Sum_probs=37.1
Q ss_pred HHHHHHHHcCCCeEEEeeeecC-CcccCCCCCCCCcccccCCC-CCchHHHHHHHHhhcCCC
Q psy1381 40 HWADILASSGAKYVVLTSKHHE-GYTLWPSKYAFSWNSMDIGP-KRDLVDYTFGNWFTGGSP 99 (102)
Q Consensus 40 ~Wa~l~k~aGakyvvlTtKHHd-GF~lW~S~~~~~~~s~~~~p-~rDiv~el~~a~~~~Gl~ 99 (102)
+-++-++++|.+.|-|+--+-- |--.|--... +|..+.... ..|=+++|+++|++.||.
T Consensus 115 ~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~-~~~~~~~~~G~~~e~k~lV~~aH~~Gi~ 175 (542)
T TIGR02402 115 EKLPYLADLGITAIELMPVAQFPGTRGWGYDGV-LPYAPHNAYGGPDDLKALVDAAHGLGLG 175 (542)
T ss_pred HhhHHHHHcCCCEEEeCccccCCCCCCCCCCcc-CccccccccCCHHHHHHHHHHHHHCCCE
Confidence 3478899999999998876431 1112222222 222332222 357799999999999984
No 33
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=62.74 E-value=28 Score=27.61 Aligned_cols=54 Identities=17% Similarity=0.184 Sum_probs=32.1
Q ss_pred HHHHHHHHHHcCCCeEEEeeeecCCcccCCCCCCCCcccccCCCCCchHHHHHHHHhhcCC
Q psy1381 38 ANHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVDYTFGNWFTGGS 98 (102)
Q Consensus 38 p~~Wa~l~k~aGakyvvlTtKHHdGF~lW~S~~~~~~~s~~~~p~rDiv~el~~a~~~~Gl 98 (102)
-.++++.|++.|..|+++ -+|...|-.....+ ..... ...=|.||++=+++.|+
T Consensus 34 ~k~yIDfAa~~G~eYvlv----D~GW~~~~~~~~~d--~~~~~-~~~dl~elv~Ya~~KgV 87 (273)
T PF10566_consen 34 QKRYIDFAAEMGIEYVLV----DAGWYGWEKDDDFD--FTKPI-PDFDLPELVDYAKEKGV 87 (273)
T ss_dssp HHHHHHHHHHTT-SEEEE----BTTCCGS--TTT----TT-B--TT--HHHHHHHHHHTT-
T ss_pred HHHHHHHHHHcCCCEEEe----cccccccccccccc--ccccC-CccCHHHHHHHHHHcCC
Confidence 378999999999999999 44544433333322 22222 34557899999999886
No 34
>PTZ00445 p36-lilke protein; Provisional
Probab=62.73 E-value=59 Score=25.30 Aligned_cols=67 Identities=12% Similarity=0.097 Sum_probs=43.0
Q ss_pred hccCCCCCCCH----HHHHHHHHHcCCCeEEE------eeeecCCcccCCCCCCCCcccccCCCCCchHHHHHHHHhhcC
Q psy1381 28 AKDFTAEFFDA----NHWADILASSGAKYVVL------TSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVDYTFGNWFTGG 97 (102)
Q Consensus 28 a~~F~p~~fDp----~~Wa~l~k~aGakyvvl------TtKHHdGF~lW~S~~~~~~~s~~~~p~rDiv~el~~a~~~~G 97 (102)
...|.-...++ +..++++++.|.|-|++ +++|-.|+.-.+.... . . .+..+.-+++|..++++.|
T Consensus 17 ~~~~~~~~~~~~~~~~~~v~~L~~~GIk~Va~D~DnTlI~~HsgG~~~~~~~~~-~--~--~~~~tpefk~~~~~l~~~~ 91 (219)
T PTZ00445 17 IESGLFDHLNPHESADKFVDLLNECGIKVIASDFDLTMITKHSGGYIDPDNDDI-R--V--LTSVTPDFKILGKRLKNSN 91 (219)
T ss_pred HHhcccccCCHHHHHHHHHHHHHHcCCeEEEecchhhhhhhhcccccCCCcchh-h--h--hccCCHHHHHHHHHHHHCC
Confidence 34443334454 56778899999999985 8899999544431111 1 1 1113444888999999999
Q ss_pred CC
Q psy1381 98 SP 99 (102)
Q Consensus 98 l~ 99 (102)
++
T Consensus 92 I~ 93 (219)
T PTZ00445 92 IK 93 (219)
T ss_pred Ce
Confidence 86
No 35
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=62.72 E-value=20 Score=28.21 Aligned_cols=73 Identities=18% Similarity=0.184 Sum_probs=52.5
Q ss_pred ChHHHHHHHHhCCCCC----Ch---HHhhccC-CCCCCCHHHHHHHHHHcCCCeEEEeeeecCCcccCCCCCCCCccccc
Q psy1381 7 NSTVTKFMERNYKPGF----TY---QDFAKDF-TAEFFDANHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMD 78 (102)
Q Consensus 7 ~~~y~~~~~~~~~~~~----~Y---~~~a~~F-~p~~fDp~~Wa~l~k~aGakyvvlTtKHHdGF~lW~S~~~~~~~s~~ 78 (102)
||+...=+.+.||.+- .+ +...+.| .-+.+++.+-++.+.+.|+..+++|.-+-||-+
T Consensus 110 ~p~~v~~~~~~~g~rivv~lD~r~g~vav~GW~e~s~~~~~~l~~~~~~~g~~~ii~TdI~~DGtl-------------- 175 (241)
T COG0106 110 NPDLVKELCEEYGDRIVVALDARDGKVAVSGWQEDSGVELEELAKRLEEVGLAHILYTDISRDGTL-------------- 175 (241)
T ss_pred CHHHHHHHHHHcCCcEEEEEEccCCccccccccccccCCHHHHHHHHHhcCCCeEEEEeccccccc--------------
Confidence 5666655555665210 00 1134556 447899999999999999999999999998743
Q ss_pred CCCCCchHHHHHHHH
Q psy1381 79 IGPKRDLVDYTFGNW 93 (102)
Q Consensus 79 ~~p~rDiv~el~~a~ 93 (102)
.||..|++++|+++.
T Consensus 176 ~G~n~~l~~~l~~~~ 190 (241)
T COG0106 176 SGPNVDLVKELAEAV 190 (241)
T ss_pred CCCCHHHHHHHHHHh
Confidence 477889999998876
No 36
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=62.67 E-value=8.2 Score=29.89 Aligned_cols=55 Identities=11% Similarity=0.121 Sum_probs=44.1
Q ss_pred CCCCCHHHHHHHHHHcCCCeEEEeeeecCCcccCCCCCCCCcccccCCCCCchHHHHHHHHhhcCCC
Q psy1381 33 AEFFDANHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVDYTFGNWFTGGSP 99 (102)
Q Consensus 33 p~~fDp~~Wa~l~k~aGakyvvlTtKHHdGF~lW~S~~~~~~~s~~~~p~rDiv~el~~a~~~~Gl~ 99 (102)
-...+|=..-+.+++||+.-+++-|--.||=.||+-- ..-.++||++++|++||.
T Consensus 128 vgsv~Pl~~P~vaa~ag~DvaMvDTaiKDGkslFdfm------------~~e~l~eFvd~Ah~hGL~ 182 (235)
T COG1891 128 VGSVSPLLLPEVAAEAGADVAMVDTAIKDGKSLFDFM------------DEEELEEFVDLAHEHGLE 182 (235)
T ss_pred ccCcCccccHHHHHhcCCCEEEEecccccchhHHhhh------------cHHHHHHHHHHHHHcchH
Confidence 3456677778899999999999999888887776532 245689999999999984
No 37
>PRK11709 putative L-ascorbate 6-phosphate lactonase; Provisional
Probab=62.29 E-value=12 Score=30.55 Aligned_cols=32 Identities=19% Similarity=0.251 Sum_probs=26.6
Q ss_pred CCCCCHHHHHHHHHHcCCCeEEEeeeecCCcccC
Q psy1381 33 AEFFDANHWADILASSGAKYVVLTSKHHEGYTLW 66 (102)
Q Consensus 33 p~~fDp~~Wa~l~k~aGakyvvlTtKHHdGF~lW 66 (102)
....+|++++++++++++|.+|++ |.|-|.+-
T Consensus 258 ~~hm~p~ea~~~a~~l~ak~vIpi--H~dtf~~~ 289 (355)
T PRK11709 258 TDKMTSIDILRMAESLNAKVVIPV--HHDIWSNF 289 (355)
T ss_pred cCCCCHHHHHHHHHHcCCCEEEEE--Chhhcccc
Confidence 347899999999999999988876 88866543
No 38
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=62.14 E-value=12 Score=32.32 Aligned_cols=32 Identities=19% Similarity=0.211 Sum_probs=29.1
Q ss_pred CCCCCCHHHHHHHHHHcCCCeEEEeeeecCCc
Q psy1381 32 TAEFFDANHWADILASSGAKYVVLTSKHHEGY 63 (102)
Q Consensus 32 ~p~~fDp~~Wa~l~k~aGakyvvlTtKHHdGF 63 (102)
..+..|+-+|++.+.+.||..+++|.-..||-
T Consensus 434 ~~~~~~~~~~~~~~~~~Gageil~t~id~DGt 465 (538)
T PLN02617 434 EGRPIGAYELAKAVEELGAGEILLNCIDCDGQ 465 (538)
T ss_pred ccCCCCHHHHHHHHHhcCCCEEEEeecccccc
Confidence 34699999999999999999999999999973
No 39
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=61.99 E-value=15 Score=24.88 Aligned_cols=36 Identities=19% Similarity=0.038 Sum_probs=25.8
Q ss_pred HHHHHHHHHcCCCeEEEeeeecCCcccCCCCCCCCcccccCCCCCchHHHHHHHHhhcCCC
Q psy1381 39 NHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVDYTFGNWFTGGSP 99 (102)
Q Consensus 39 ~~Wa~l~k~aGakyvvlTtKHHdGF~lW~S~~~~~~~s~~~~p~rDiv~el~~a~~~~Gl~ 99 (102)
.++++-+.+.|++.+++..- ..-.|+.+.|+++|+.
T Consensus 69 ~~~v~~~~~~g~~~v~~~~g-------------------------~~~~~~~~~a~~~gi~ 104 (116)
T PF13380_consen 69 PEIVDEAAALGVKAVWLQPG-------------------------AESEELIEAAREAGIR 104 (116)
T ss_dssp HHHHHHHHHHT-SEEEE-TT-------------------------S--HHHHHHHHHTT-E
T ss_pred HHHHHHHHHcCCCEEEEEcc-------------------------hHHHHHHHHHHHcCCE
Confidence 67888888999999999876 2346888999999874
No 40
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=61.94 E-value=20 Score=30.49 Aligned_cols=59 Identities=8% Similarity=-0.079 Sum_probs=35.3
Q ss_pred HHHHHHHHcCCCeEEEeeeecCCcccCCCCCCCCcccccCC-CCCchHHHHHHHHhhcCCC
Q psy1381 40 HWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIG-PKRDLVDYTFGNWFTGGSP 99 (102)
Q Consensus 40 ~Wa~l~k~aGakyvvlTtKHHdGF~lW~S~~~~~~~s~~~~-p~rDiv~el~~a~~~~Gl~ 99 (102)
+-++-++++|++.|.|+.-+-.+-.-+.-..+ +|..++.. ...+-+++|+++|+++||-
T Consensus 31 ~~l~yl~~lG~~~i~l~Pi~~~~~~~~gY~~~-d~~~id~~~Gt~~~~~~lv~~ah~~gi~ 90 (543)
T TIGR02403 31 EKLDYLKKLGVDYIWLNPFYVSPQKDNGYDVS-DYYAINPLFGTMADFEELVSEAKKRNIK 90 (543)
T ss_pred HhHHHHHHcCCCEEEECCcccCCCCCCCCCcc-ccCccCcccCCHHHHHHHHHHHHHCCCE
Confidence 34578899999999998655432111000111 12222211 1357799999999999983
No 41
>cd07320 Extradiol_Dioxygenase_3B_like Subunit B of Class III Extradiol ring-cleavage dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site of the aromatic ring. Intradiol enzymes cleave the aromatic ring between two hydroxyl groups, whereas extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Extradiol dioxygenases can be further divided into three classes. Class I and II enzymes are evolutionary related and show sequence similarity, with the two-domain class II enzymes evolving from the class I enzyme through gene duplication. Class III enzymes are different in sequence and structure and usually have two subunits, designated A and B. This model represents the catalytic subunit B of extradiol dioxygenase class
Probab=61.63 E-value=24 Score=26.46 Aligned_cols=60 Identities=10% Similarity=0.009 Sum_probs=38.7
Q ss_pred HHHHHHHHHcCCCeEEEeeeecC----CcccCCCCCC-CCccc-----cc--CCCCCchHHHHHHHHhhcCCC
Q psy1381 39 NHWADILASSGAKYVVLTSKHHE----GYTLWPSKYA-FSWNS-----MD--IGPKRDLVDYTFGNWFTGGSP 99 (102)
Q Consensus 39 ~~Wa~l~k~aGakyvvlTtKHHd----GF~lW~S~~~-~~~~s-----~~--~~p~rDiv~el~~a~~~~Gl~ 99 (102)
+++.+.+++...+-||+..-||. +|++...+.- ..++. .. .....+++.+|++.+++ |++
T Consensus 27 ~~~~~~~~~~~pd~iviis~hh~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~d~ela~~l~~~~~~-~~~ 98 (260)
T cd07320 27 IEISKRIKEKRPDTIIVVSPHHLVIISATAITCAETFETADSGQWGRRPVYDVKGDPDLAWEIAEELIK-EIP 98 (260)
T ss_pred HHHHHHHHHhCCCEEEEEeCCccccCCCEEEeecceeccccccccCCCCCcCCCCCHHHHHHHHHHHHh-cCC
Confidence 33455556678899999999997 5666554431 01111 11 12257899999999988 876
No 42
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=61.53 E-value=12 Score=28.34 Aligned_cols=34 Identities=24% Similarity=0.200 Sum_probs=29.8
Q ss_pred cCCCCCCCHHHHHHHHHHcCCCeEEEeeeecCCc
Q psy1381 30 DFTAEFFDANHWADILASSGAKYVVLTSKHHEGY 63 (102)
Q Consensus 30 ~F~p~~fDp~~Wa~l~k~aGakyvvlTtKHHdGF 63 (102)
.|..+..++.++++.+.++|+..+++|....+|-
T Consensus 140 Gw~~~~~~~~~~~~~l~~~G~~~iiv~~~~~~g~ 173 (241)
T PRK14024 140 GWTRDGGDLWEVLERLDSAGCSRYVVTDVTKDGT 173 (241)
T ss_pred CeeecCccHHHHHHHHHhcCCCEEEEEeecCCCC
Confidence 4555678999999999999999999999999974
No 43
>PF07487 SopE_GEF: SopE GEF domain; InterPro: IPR016019 The type III secretion system of Gram-negative bacteria is used to transport virulence factors from the pathogen directly into the host cell [] and is only triggered when the bacterium comes into close contact with the host. Effector proteins secreted by the type III system do not possess a secretion signal, and are considered unique because of this. Salmonella spp. secrete an effector protein called SopE that is responsible for stimulating the reorganisation of the host cell actin cytoskeleton, and ruffling of the cellular membrane []. It acts as a guanyl-nucleotide-exchange factor on Rho-GTPase proteins such as Cdc42 and Rac. As it is imperative for the bacterium to revert the cell back to its "normal" state as quickly as possible, another tyrosine phosphatase effector called SptP reverses the actions brought about by SopE []. Recently, it has been found that SopE and its protein homologue SopE2 can activate different sets of Rho-GTPases in the host cell []. Far from being a redundant set of two similar type III effectors, they both act in unison to specifically activate different Rho-GTPase signalling cascades in the host cell during infection. This entry represents the guanine nucleotide exchange factor domain of SopE. This domain has an alpha-helical structure consisting of two three-helix bundles arranged in a lamdba shape [, ].; GO: 0005085 guanyl-nucleotide exchange factor activity, 0009405 pathogenesis, 0031532 actin cytoskeleton reorganization, 0032862 activation of Rho GTPase activity, 0005576 extracellular region; PDB: 1GZS_B 1R9K_A 1R6E_A 2JOL_A 2JOK_A.
Probab=61.43 E-value=5.1 Score=29.82 Aligned_cols=18 Identities=17% Similarity=0.058 Sum_probs=15.2
Q ss_pred chHHHHHHHHhhcCCCCC
Q psy1381 84 DLVDYTFGNWFTGGSPGK 101 (102)
Q Consensus 84 Div~el~~a~~~~Gl~~~ 101 (102)
=.+.|+.++||+.||||.
T Consensus 64 pFL~eiGeaak~aGLPge 81 (165)
T PF07487_consen 64 PFLFEIGEAAKNAGLPGE 81 (165)
T ss_dssp HHHHHHHHHHHHTT-SEE
T ss_pred HHHHHHHHHHHHCCCCcc
Confidence 389999999999999984
No 44
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=61.28 E-value=21 Score=27.88 Aligned_cols=48 Identities=19% Similarity=0.290 Sum_probs=33.3
Q ss_pred CCCHHHHHHHH---HHcCCCeEEEeeeecCC-cccCCCCCCCCcccccCCCCCchHHHHHH
Q psy1381 35 FFDANHWADIL---ASSGAKYVVLTSKHHEG-YTLWPSKYAFSWNSMDIGPKRDLVDYTFG 91 (102)
Q Consensus 35 ~fDp~~Wa~l~---k~aGakyvvlTtKHHdG-F~lW~S~~~~~~~s~~~~p~rDiv~el~~ 91 (102)
..+|++|++.+ -+|||.+||+=++--.+ -=+++..-+ .+.|+|.++++
T Consensus 130 ~~~~~~~i~~~~~~LeAGA~~ViiEarEsg~~~Gi~~~~g~---------~r~d~v~~i~~ 181 (237)
T TIGR03849 130 ELTPDDRIKLINKDLEAGADYVIIEGRESGKNIGLFDEKGN---------VKEDELDVLAE 181 (237)
T ss_pred cCCHHHHHHHHHHHHHCCCcEEEEeehhcCCCcceeCCCCC---------CchHHHHHHHh
Confidence 68999999999 89999999998875421 223333322 14677777766
No 45
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=60.87 E-value=13 Score=28.08 Aligned_cols=31 Identities=32% Similarity=0.478 Sum_probs=27.2
Q ss_pred CCCCCCHHHHHHHHHHcCCCeEEEeeeecCC
Q psy1381 32 TAEFFDANHWADILASSGAKYVVLTSKHHEG 62 (102)
Q Consensus 32 ~p~~fDp~~Wa~l~k~aGakyvvlTtKHHdG 62 (102)
.++.+++.++++.+.++|+..+++|.-+.+|
T Consensus 149 ~~~~~~~~~~~~~~~~~g~~~ii~~~i~~~g 179 (253)
T PRK02083 149 KPTGLDAVEWAKEVEELGAGEILLTSMDRDG 179 (253)
T ss_pred eecCCCHHHHHHHHHHcCCCEEEEcCCcCCC
Confidence 4568899999999999999999999877666
No 46
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=60.50 E-value=7.9 Score=29.14 Aligned_cols=52 Identities=10% Similarity=0.051 Sum_probs=32.1
Q ss_pred HHHHHHHHHcCCCeEEEeeeecCCcccCCCCCCCCcccccCCCCCchHHHHHHHHhhcCCC
Q psy1381 39 NHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVDYTFGNWFTGGSP 99 (102)
Q Consensus 39 ~~Wa~l~k~aGakyvvlTtKHHdGF~lW~S~~~~~~~s~~~~p~rDiv~el~~a~~~~Gl~ 99 (102)
++.+++++++|++++++. |+..|....... .. .--.+-++++.+.++++|+.
T Consensus 102 ~~~i~~a~~lG~~~i~~~-----~~~~~~~~~~~~--~~--~~~~~~l~~l~~~A~~~GV~ 153 (283)
T PRK13209 102 RKAIQLAQDLGIRVIQLA-----GYDVYYEQANNE--TR--RRFIDGLKESVELASRASVT 153 (283)
T ss_pred HHHHHHHHHcCCCEEEEC-----CccccccccHHH--HH--HHHHHHHHHHHHHHHHhCCE
Confidence 468899999999999873 444333221100 00 00135678888888888873
No 47
>PF07338 DUF1471: Protein of unknown function (DUF1471); InterPro: IPR010854 This entry consists of several hypothetical Enterobacterial proteins of around 90 residues in length. Some of the proteins are annotated as ydgH precursors and contain two copies of this region, one at the N terminus and the other at the C terminus. The function of this family is unknown.; PDB: 2NOC_A 2JNA_B 4EVU_B.
Probab=60.05 E-value=18 Score=21.94 Aligned_cols=22 Identities=32% Similarity=0.353 Sum_probs=18.6
Q ss_pred HHHHHHHHHcCCCeEEEeeeec
Q psy1381 39 NHWADILASSGAKYVVLTSKHH 60 (102)
Q Consensus 39 ~~Wa~l~k~aGakyvvlTtKHH 60 (102)
++.++.+.+.||+|..+|.-+-
T Consensus 22 ~~la~kAd~~GA~~y~I~~~~~ 43 (56)
T PF07338_consen 22 EALAKKADEKGAKYYRITSASE 43 (56)
T ss_dssp HHHHHHHHHTT-SEEEEEEEEE
T ss_pred HHHHHHHHHcCCCEEEEEEEEc
Confidence 6788999999999999998776
No 48
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=58.89 E-value=16 Score=29.06 Aligned_cols=33 Identities=30% Similarity=0.423 Sum_probs=29.7
Q ss_pred CCCCCCHHHHHHHHHHcCCCeEEEeeeecCCcc
Q psy1381 32 TAEFFDANHWADILASSGAKYVVLTSKHHEGYT 64 (102)
Q Consensus 32 ~p~~fDp~~Wa~l~k~aGakyvvlTtKHHdGF~ 64 (102)
.++.+|+=+|++.+.+.||.-++||.--.||-.
T Consensus 151 ~~t~~d~~~Wa~~~e~~GAGEIlLtsmD~DGtk 183 (256)
T COG0107 151 EDTGLDAVEWAKEVEELGAGEILLTSMDRDGTK 183 (256)
T ss_pred cCCCcCHHHHHHHHHHcCCceEEEeeecccccc
Confidence 347899999999999999999999999999853
No 49
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=58.69 E-value=11 Score=29.37 Aligned_cols=30 Identities=17% Similarity=0.255 Sum_probs=24.3
Q ss_pred cCCCCCC-CHHHHHHHHHHcCCCeEEEeeee
Q psy1381 30 DFTAEFF-DANHWADILASSGAKYVVLTSKH 59 (102)
Q Consensus 30 ~F~p~~f-Dp~~Wa~l~k~aGakyvvlTtKH 59 (102)
+|++++| ||++.++.+++.|+|.++.+-=|
T Consensus 67 t~d~~~FPdp~~mi~~Lh~~G~k~v~~v~P~ 97 (292)
T cd06595 67 SWNRKLFPDPEKLLQDLHDRGLKVTLNLHPA 97 (292)
T ss_pred EEChhcCCCHHHHHHHHHHCCCEEEEEeCCC
Confidence 5567665 89999999999999988877443
No 50
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=58.35 E-value=41 Score=29.14 Aligned_cols=60 Identities=10% Similarity=0.028 Sum_probs=36.2
Q ss_pred HHHHHHHHHcCCCeEEEeeeec-CCcccCCCCCCCCcccccCCC-CCchHHHHHHHHhhcCCC
Q psy1381 39 NHWADILASSGAKYVVLTSKHH-EGYTLWPSKYAFSWNSMDIGP-KRDLVDYTFGNWFTGGSP 99 (102)
Q Consensus 39 ~~Wa~l~k~aGakyvvlTtKHH-dGF~lW~S~~~~~~~s~~~~p-~rDiv~el~~a~~~~Gl~ 99 (102)
+..++-++++|.+.|-|+-=.- .+-..|--..+ +|.++...- ..+=+++|+++|+++||.
T Consensus 160 ~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~-~y~~~~~~~Gt~~dlk~lV~~~H~~Gi~ 221 (613)
T TIGR01515 160 DQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVT-GYYAPTSRFGTPDDFMYFVDACHQAGIG 221 (613)
T ss_pred HHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcc-cCcccccccCCHHHHHHHHHHHHHCCCE
Confidence 3455777999999999876321 11112333333 232333211 346689999999999983
No 51
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=58.04 E-value=12 Score=29.74 Aligned_cols=27 Identities=30% Similarity=0.471 Sum_probs=23.3
Q ss_pred cCCCCCC-CHHHHHHHHHHcCCCeEEEe
Q psy1381 30 DFTAEFF-DANHWADILASSGAKYVVLT 56 (102)
Q Consensus 30 ~F~p~~f-Dp~~Wa~l~k~aGakyvvlT 56 (102)
.|++++| ||++.++.+++.|.|.++.+
T Consensus 57 ~~d~~~FPdp~~mi~~L~~~G~k~~~~~ 84 (339)
T cd06603 57 TWDKKKFPDPEKMQEKLASKGRKLVTIV 84 (339)
T ss_pred EeCcccCCCHHHHHHHHHHCCCEEEEEe
Confidence 5688888 99999999999999977654
No 52
>TIGR03586 PseI pseudaminic acid synthase.
Probab=58.02 E-value=11 Score=30.55 Aligned_cols=62 Identities=16% Similarity=0.137 Sum_probs=37.5
Q ss_pred CHHHHHHHHHHcCCCeEEEeeeecCCccc------CCCCCCCCccc------c-cCCCCCchHHHHHHHHhhcCCC
Q psy1381 37 DANHWADILASSGAKYVVLTSKHHEGYTL------WPSKYAFSWNS------M-DIGPKRDLVDYTFGNWFTGGSP 99 (102)
Q Consensus 37 Dp~~Wa~l~k~aGakyvvlTtKHHdGF~l------W~S~~~~~~~s------~-~~~p~rDiv~el~~a~~~~Gl~ 99 (102)
-+.+.++.++++||.-|=|-+-.-+-+.. +..+.. .|+. . ..--..|-..+|.+.|++.||+
T Consensus 18 ~A~~lI~~A~~aGAdavKFQ~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~el~~e~~~~L~~~~~~~Gi~ 92 (327)
T TIGR03586 18 RALAMIEAAKAAGADAIKLQTYTPDTITLDSDRPEFIIKGG-LWDGRTLYDLYQEAHTPWEWHKELFERAKELGLT 92 (327)
T ss_pred HHHHHHHHHHHhCCCEEEeeeccHHHhhccccccccccccC-CcCCccHHHHHHHhhCCHHHHHHHHHHHHHhCCc
Confidence 36789999999999977766644443320 000000 1110 0 0112457778999999999997
No 53
>COG1400 SEC65 Signal recognition particle 19 kDa protein [Intracellular trafficking and secretion]
Probab=57.71 E-value=21 Score=24.25 Aligned_cols=66 Identities=18% Similarity=0.117 Sum_probs=45.5
Q ss_pred hhccCCCCCCCHHHHHHHHHHcCCCeEEEeeeecCCcccCCCCCCCCcccccCCCCCchHHHHHHHHhh
Q psy1381 27 FAKDFTAEFFDANHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVDYTFGNWFT 95 (102)
Q Consensus 27 ~a~~F~p~~fDp~~Wa~l~k~aGakyvvlTtKHHdGF~lW~S~~~~~~~s~~~~p~rDiv~el~~a~~~ 95 (102)
+...+..+++..++.+++++++|.++.|.--|-+=+ .-|.+. . -.-....+++..+++.+++..++
T Consensus 23 vpk~laV~~P~~~ei~~a~~~LGl~~~v~~dk~yPr-~~w~~~-g-~vive~~~~K~~~lk~ia~~lr~ 88 (93)
T COG1400 23 VPKELAVENPSLEEIAEALRELGLKPKVERDKKYPR-LWWEIS-G-RVIVESNGKKSKLLKAIAAKLRE 88 (93)
T ss_pred cchhhcccCCCHHHHHHHHHHcCCCeeechhhcCCC-chhhhC-c-eEEEecCccHhHHHHHHHHHHHH
Confidence 345677889999999999999999998655555544 344444 2 11122345678888888877664
No 54
>cd07371 2A5CPDO_AB The alpha and beta subunits of the Class III extradiol dioxygenase, 2-amino-5-chlorophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol. This subfamily contains both alpha and beta subunits of 2-amino-5-chlorophenol 1,6-dioxygenase (2A5CPDO), which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, an intermediate during p-chloronitrobenzene degradation. 2A5CPDO is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. The active enzyme is probably a heterotetramer, composed of two alpha and two beta subunits. Alpha and beta subunits share significant sequence similarity and may have evolved by gene duplication.
Probab=57.62 E-value=30 Score=26.72 Aligned_cols=61 Identities=15% Similarity=0.074 Sum_probs=39.6
Q ss_pred HHHHHHHHHcCCCeEEEeeeecCC----cccCCCCCC------C---CcccccC--CCCCchHHHHHHHHhhcCCCC
Q psy1381 39 NHWADILASSGAKYVVLTSKHHEG----YTLWPSKYA------F---SWNSMDI--GPKRDLVDYTFGNWFTGGSPG 100 (102)
Q Consensus 39 ~~Wa~l~k~aGakyvvlTtKHHdG----F~lW~S~~~------~---~~~s~~~--~p~rDiv~el~~a~~~~Gl~~ 100 (102)
+++.+.+++++.+-+|+.+-|+.= |++ .+... . .+..+.. ....+|..++++.+++.|++-
T Consensus 29 ~~l~~~l~~~~Pd~IvviS~Hw~~~~~~~~i-~~~~~~g~~~~~~~~~~~~~~y~~~g~~eLA~~i~~~~~~~gi~~ 104 (268)
T cd07371 29 ERAGASLAASRPDVVLVYSTQWIAVLDHHWL-TRPRSEGRHVDENWPEFGRLDYSINVDVELAEACVEEGRKAGLVT 104 (268)
T ss_pred HHHHHHHHHcCCCEEEEECCCCccccCcEEe-cccccceeecCcccchhceeeecCCCCHHHHHHHHHHHHHCCCcE
Confidence 456666666789999999999853 444 33110 0 0111222 225789999999999999874
No 55
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=57.51 E-value=26 Score=27.02 Aligned_cols=38 Identities=8% Similarity=0.002 Sum_probs=29.0
Q ss_pred HHHHHHHHHcCCCeEEEeeeecCCcccCCCCCCCCcccccCCCCCchHHHHHHHHhhcCCC
Q psy1381 39 NHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVDYTFGNWFTGGSP 99 (102)
Q Consensus 39 ~~Wa~l~k~aGakyvvlTtKHHdGF~lW~S~~~~~~~s~~~~p~rDiv~el~~a~~~~Gl~ 99 (102)
+.+++.++++|+..+++- | .. -+-..++.+.|+++|+.
T Consensus 105 e~f~~~~~~aGvdgviip----D--------lp-----------~ee~~~~~~~~~~~gl~ 142 (256)
T TIGR00262 105 EEFYAKCKEVGVDGVLVA----D--------LP-----------LEESGDLVEAAKKHGVK 142 (256)
T ss_pred HHHHHHHHHcCCCEEEEC----C--------CC-----------hHHHHHHHHHHHHCCCc
Confidence 999999999999998885 2 01 13357788888888864
No 56
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=57.37 E-value=18 Score=27.73 Aligned_cols=32 Identities=22% Similarity=0.151 Sum_probs=28.3
Q ss_pred CCCCCCHHHHHHHHHHcCCCeEEEeeeecCCc
Q psy1381 32 TAEFFDANHWADILASSGAKYVVLTSKHHEGY 63 (102)
Q Consensus 32 ~p~~fDp~~Wa~l~k~aGakyvvlTtKHHdGF 63 (102)
..+..+|.++++.+.+.|+..+++|..+-||.
T Consensus 148 ~~~~~~~~e~~~~~~~~g~~~ii~~~i~~~G~ 179 (258)
T PRK01033 148 KKLKKDPLELAKEYEALGAGEILLNSIDRDGT 179 (258)
T ss_pred ecCCCCHHHHHHHHHHcCCCEEEEEccCCCCC
Confidence 34688999999999999999999999888874
No 57
>KOG2781|consensus
Probab=57.26 E-value=24 Score=28.38 Aligned_cols=52 Identities=17% Similarity=0.327 Sum_probs=43.4
Q ss_pred CCCCChHHHHHHHHhC--CCCCChHHhhccCCCCCCCHHHHHHHHHHcCCCeEEEeeeec
Q psy1381 3 SENPNSTVTKFMERNY--KPGFTYQDFAKDFTAEFFDANHWADILASSGAKYVVLTSKHH 60 (102)
Q Consensus 3 ~~~~~~~y~~~~~~~~--~~~~~Y~~~a~~F~p~~fDp~~Wa~l~k~aGakyvvlTtKHH 60 (102)
|++|++.-.+|+++-- .|+ +.++|--++.-.+.+++|++-|..-+|++..|-
T Consensus 90 SR~PSsrL~~FaKelkLvfPN------aqr~nRG~~~~~~lv~a~ra~~~Td~iivHEhR 143 (290)
T KOG2781|consen 90 SRDPSSRLKMFAKELKLVFPN------AQRLNRGNYVVGELVDAARANGVTDLIIVHEHR 143 (290)
T ss_pred CCCchHHHHHHHHhheEeccC------hhhhcccceeHHHHHHHHHHCCCceEEEEeccC
Confidence 8899999999998742 111 457788888899999999999999999999886
No 58
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=56.21 E-value=10 Score=20.75 Aligned_cols=16 Identities=13% Similarity=-0.107 Sum_probs=13.2
Q ss_pred HHHHHHHHhhcCCCCC
Q psy1381 86 VDYTFGNWFTGGSPGK 101 (102)
Q Consensus 86 v~el~~a~~~~Gl~~~ 101 (102)
|.||-+.|++.|||..
T Consensus 6 v~eLk~~l~~~gL~~~ 21 (35)
T PF02037_consen 6 VAELKEELKERGLSTS 21 (35)
T ss_dssp HHHHHHHHHHTTS-ST
T ss_pred HHHHHHHHHHCCCCCC
Confidence 7899999999999853
No 59
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=56.20 E-value=31 Score=26.19 Aligned_cols=32 Identities=31% Similarity=0.449 Sum_probs=27.4
Q ss_pred CCCCCCHHHHHHHHHHcCCCeEEEeeeecCCc
Q psy1381 32 TAEFFDANHWADILASSGAKYVVLTSKHHEGY 63 (102)
Q Consensus 32 ~p~~fDp~~Wa~l~k~aGakyvvlTtKHHdGF 63 (102)
..+..++.++++.+.++|+..+++|..+-+|.
T Consensus 151 ~~~~~~~~~~~~~l~~~G~~~iivt~i~~~g~ 182 (254)
T TIGR00735 151 ESTGLDAVEWAKEVEKLGAGEILLTSMDKDGT 182 (254)
T ss_pred ccCCCCHHHHHHHHHHcCCCEEEEeCcCcccC
Confidence 44688999999999999999999998766664
No 60
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=55.30 E-value=14 Score=28.60 Aligned_cols=20 Identities=30% Similarity=0.307 Sum_probs=18.1
Q ss_pred CHHHHHHHHHHcCCCeEEEe
Q psy1381 37 DANHWADILASSGAKYVVLT 56 (102)
Q Consensus 37 Dp~~Wa~l~k~aGakyvvlT 56 (102)
||++|++.++++|+.++.+=
T Consensus 79 ~P~~~i~~~~~aGad~It~H 98 (228)
T PRK08091 79 DQFEVAKACVAAGADIVTLQ 98 (228)
T ss_pred CHHHHHHHHHHhCCCEEEEc
Confidence 69999999999999988773
No 61
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=55.23 E-value=14 Score=28.48 Aligned_cols=22 Identities=32% Similarity=0.655 Sum_probs=19.1
Q ss_pred CHHHHHHHHHHcCCCeEEEeee
Q psy1381 37 DANHWADILASSGAKYVVLTSK 58 (102)
Q Consensus 37 Dp~~Wa~l~k~aGakyvvlTtK 58 (102)
||+.|++.+.++|+.++.+=..
T Consensus 70 ~P~~~i~~~~~aGad~it~H~E 91 (229)
T PRK09722 70 DPQDYIDQLADAGADFITLHPE 91 (229)
T ss_pred CHHHHHHHHHHcCCCEEEECcc
Confidence 6999999999999998887444
No 62
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=55.19 E-value=18 Score=28.91 Aligned_cols=26 Identities=31% Similarity=0.497 Sum_probs=21.4
Q ss_pred HHHHHHHHHHcCCCeEEEeeeecCCc
Q psy1381 38 ANHWADILASSGAKYVVLTSKHHEGY 63 (102)
Q Consensus 38 p~~Wa~l~k~aGakyvvlTtKHHdGF 63 (102)
|.+-|+.+++.|.+++|||+-+.|.+
T Consensus 96 i~~~a~~~~~~GlkevvLTsv~~ddl 121 (302)
T TIGR00510 96 PAKLAETIKDMGLKYVVITSVDRDDL 121 (302)
T ss_pred HHHHHHHHHHCCCCEEEEEeecCCCc
Confidence 45667778889999999999998743
No 63
>PLN02960 alpha-amylase
Probab=55.08 E-value=36 Score=31.54 Aligned_cols=59 Identities=12% Similarity=0.031 Sum_probs=41.1
Q ss_pred HHHHHHHHcCCCeEEEeeee-cCCcccCCCCCCCCcccccCCC-CCchHHHHHHHHhhcCCC
Q psy1381 40 HWADILASSGAKYVVLTSKH-HEGYTLWPSKYAFSWNSMDIGP-KRDLVDYTFGNWFTGGSP 99 (102)
Q Consensus 40 ~Wa~l~k~aGakyvvlTtKH-HdGF~lW~S~~~~~~~s~~~~p-~rDiv~el~~a~~~~Gl~ 99 (102)
..++-++++|.+.|-|+.-. |.++..|--..+ +|.++.... ..|=+++|+++|+++||.
T Consensus 421 ~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~-~yfa~~~~yGtp~dfk~LVd~aH~~GI~ 481 (897)
T PLN02960 421 KVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVT-NFFAVSSRFGTPDDFKRLVDEAHGLGLL 481 (897)
T ss_pred HHHHHHHHcCCCEEEECCcccCCCCCCCCCCcc-cCCCcccccCCHHHHHHHHHHHHHCCCE
Confidence 46888999999999998764 334455554444 343443322 347789999999999984
No 64
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=54.79 E-value=14 Score=28.65 Aligned_cols=23 Identities=13% Similarity=0.408 Sum_probs=20.0
Q ss_pred CCHHHHHHHHHHcCCCeEEEeee
Q psy1381 36 FDANHWADILASSGAKYVVLTSK 58 (102)
Q Consensus 36 fDp~~Wa~l~k~aGakyvvlTtK 58 (102)
-+|+.|++.+.++||.++.+=..
T Consensus 71 ~~p~~~i~~fa~agad~It~H~E 93 (220)
T COG0036 71 ENPDRYIEAFAKAGADIITFHAE 93 (220)
T ss_pred CCHHHHHHHHHHhCCCEEEEEec
Confidence 37999999999999999988544
No 65
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=54.78 E-value=30 Score=29.29 Aligned_cols=59 Identities=10% Similarity=-0.083 Sum_probs=36.5
Q ss_pred HHHHHHHHHcCCCeEEEeeeecCCcccCCCCCCCCcccccCC-CCCchHHHHHHHHhhcCC
Q psy1381 39 NHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIG-PKRDLVDYTFGNWFTGGS 98 (102)
Q Consensus 39 ~~Wa~l~k~aGakyvvlTtKHHdGF~lW~S~~~~~~~s~~~~-p~rDiv~el~~a~~~~Gl 98 (102)
.+.++-+++.|++.+.|+-=+-.+-.-+.=.+. +|..++.. ...+=+++|+++|+++||
T Consensus 31 ~~~Ldyl~~LGv~~i~L~Pi~~~~~~~~gY~~~-dy~~vd~~~Gt~~df~~Lv~~ah~~Gi 90 (539)
T TIGR02456 31 TSKLDYLKWLGVDALWLLPFFQSPLRDDGYDVS-DYRAILPEFGTIDDFKDFVDEAHARGM 90 (539)
T ss_pred HHhHHHHHHCCCCEEEECCCcCCCCCCCCCCcc-cccccChhhCCHHHHHHHHHHHHHCCC
Confidence 345778899999999999765432100100111 22222221 135779999999999998
No 66
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=54.76 E-value=14 Score=27.81 Aligned_cols=46 Identities=24% Similarity=0.286 Sum_probs=34.5
Q ss_pred CCCCHHHHHHHHHHcCCCeEEEeeeecCCcccCCCCCCCCcccccCCCCCchHHHHHHHH
Q psy1381 34 EFFDANHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVDYTFGNW 93 (102)
Q Consensus 34 ~~fDp~~Wa~l~k~aGakyvvlTtKHHdGF~lW~S~~~~~~~s~~~~p~rDiv~el~~a~ 93 (102)
+..+|.+|++.+.+.|++.+++|.-..||- ..||..++++++.+.+
T Consensus 145 ~~~~~~~~~~~~~~~g~~~ii~tdi~~dGt--------------~~G~d~~~~~~l~~~~ 190 (229)
T PF00977_consen 145 SGIDLEEFAKRLEELGAGEIILTDIDRDGT--------------MQGPDLELLKQLAEAV 190 (229)
T ss_dssp EEEEHHHHHHHHHHTT-SEEEEEETTTTTT--------------SSS--HHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHhcCCcEEEEeeccccCC--------------cCCCCHHHHHHHHHHc
Confidence 478999999999999999999999999873 3355566666666554
No 67
>PRK12313 glycogen branching enzyme; Provisional
Probab=54.64 E-value=44 Score=28.95 Aligned_cols=59 Identities=10% Similarity=0.063 Sum_probs=37.4
Q ss_pred HHHHHHHHHcCCCeEEEeee--ecCCcccCCCCCCCCcccccCCC-CCchHHHHHHHHhhcCCC
Q psy1381 39 NHWADILASSGAKYVVLTSK--HHEGYTLWPSKYAFSWNSMDIGP-KRDLVDYTFGNWFTGGSP 99 (102)
Q Consensus 39 ~~Wa~l~k~aGakyvvlTtK--HHdGF~lW~S~~~~~~~s~~~~p-~rDiv~el~~a~~~~Gl~ 99 (102)
+..++-+++.|+..|-|+-= |-. -..|--..+ +|.++.... ..+=+++|+++|+++||.
T Consensus 174 ~~ll~yl~~LGv~~i~L~Pi~~~~~-~~~~GY~~~-~y~~i~~~~Gt~~d~k~lv~~~H~~Gi~ 235 (633)
T PRK12313 174 DELIPYVKEMGYTHVEFMPLMEHPL-DGSWGYQLT-GYFAPTSRYGTPEDFMYLVDALHQNGIG 235 (633)
T ss_pred HHHHHHHHHcCCCEEEeCchhcCCC-CCCCCCCCc-CcCcCCCCCCCHHHHHHHHHHHHHCCCE
Confidence 44568899999999988764 321 112333333 233333222 357799999999999984
No 68
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=54.37 E-value=40 Score=30.53 Aligned_cols=60 Identities=10% Similarity=0.111 Sum_probs=38.9
Q ss_pred HHHHHHHHHcCCCeEEEeeeecCC-cccCCCCCCCCcccccCCC-CCchHHHHHHHHhhcCCC
Q psy1381 39 NHWADILASSGAKYVVLTSKHHEG-YTLWPSKYAFSWNSMDIGP-KRDLVDYTFGNWFTGGSP 99 (102)
Q Consensus 39 ~~Wa~l~k~aGakyvvlTtKHHdG-F~lW~S~~~~~~~s~~~~p-~rDiv~el~~a~~~~Gl~ 99 (102)
++-++-++++|...|.|+.-+--. ..-|--..+ +|..+.... ..|=+++|+++|+++||.
T Consensus 254 ~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~-~~fa~~~~~Gtp~dlk~LVd~aH~~GI~ 315 (758)
T PLN02447 254 DDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVT-NFFAVSSRSGTPEDLKYLIDKAHSLGLR 315 (758)
T ss_pred HHHHHHHHHcCCCEEEECCccccCCCCCCCcCcc-cCcccccccCCHHHHHHHHHHHHHCCCE
Confidence 456788999999999998654322 223433333 233333211 346699999999999983
No 69
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=53.14 E-value=17 Score=29.43 Aligned_cols=28 Identities=29% Similarity=0.413 Sum_probs=21.7
Q ss_pred cCCCCCC-CHHHHHHHHHHcCCCeEEEee
Q psy1381 30 DFTAEFF-DANHWADILASSGAKYVVLTS 57 (102)
Q Consensus 30 ~F~p~~f-Dp~~Wa~l~k~aGakyvvlTt 57 (102)
.|++++| ||+++++.+++.|.|.++.+.
T Consensus 76 ~~d~~~FPd~~~~~~~l~~~G~~~~~~~~ 104 (441)
T PF01055_consen 76 TWDPERFPDPKQMIDELHDQGIKVVLWVH 104 (441)
T ss_dssp -B-TTTTTTHHHHHHHHHHTT-EEEEEEE
T ss_pred ccccccccchHHHHHhHhhCCcEEEEEee
Confidence 5688888 999999999999999776554
No 70
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=52.56 E-value=40 Score=28.91 Aligned_cols=60 Identities=17% Similarity=0.016 Sum_probs=35.5
Q ss_pred HHHHHHHHHcCCCeEEEeeeecCCcccCCCCCCCCcccccCCC-CCchHHHHHHHHhhcCCC
Q psy1381 39 NHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGP-KRDLVDYTFGNWFTGGSP 99 (102)
Q Consensus 39 ~~Wa~l~k~aGakyvvlTtKHHdGF~lW~S~~~~~~~s~~~~p-~rDiv~el~~a~~~~Gl~ 99 (102)
.+.++-++++|++.+.|+.-+..+-.-+.-.+. +|..++..- ..+=+++|+++|+++||.
T Consensus 36 ~~~ldyl~~lGv~~i~l~P~~~~~~~~~gY~~~-d~~~id~~~Gt~~d~~~lv~~~h~~gi~ 96 (551)
T PRK10933 36 TQRLDYLQKLGVDAIWLTPFYVSPQVDNGYDVA-NYTAIDPTYGTLDDFDELVAQAKSRGIR 96 (551)
T ss_pred HHhhHHHHhCCCCEEEECCCCCCCCCCCCCCcc-cCCCcCcccCCHHHHHHHHHHHHHCCCE
Confidence 466789999999999997654211000000111 222222211 245689999999999984
No 71
>PRK10785 maltodextrin glucosidase; Provisional
Probab=52.23 E-value=35 Score=29.43 Aligned_cols=59 Identities=8% Similarity=-0.050 Sum_probs=36.8
Q ss_pred HHHHHHHHHcCCCeEEEeeeecCCcccCCCCCCCCcccccCCC-CCchHHHHHHHHhhcCCC
Q psy1381 39 NHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGP-KRDLVDYTFGNWFTGGSP 99 (102)
Q Consensus 39 ~~Wa~l~k~aGakyvvlTtKHHdGF~lW~S~~~~~~~s~~~~p-~rDiv~el~~a~~~~Gl~ 99 (102)
.+-++-+++.|+..+-|+-=+... ..+--.++ +|..++..- ..+-+++|+++|+++||-
T Consensus 182 ~~kLdYL~~LGv~~I~L~Pif~s~-s~hgYd~~-Dy~~iDp~~Gt~~df~~Lv~~aH~rGik 241 (598)
T PRK10785 182 SEKLPYLKKLGVTALYLNPIFTAP-SVHKYDTE-DYRHVDPQLGGDAALLRLRHATQQRGMR 241 (598)
T ss_pred HHHHHHHHHcCCCEEEeCCcccCC-CCCCcCcc-cccccCcccCCHHHHHHHHHHHHHCCCE
Confidence 456788999999999999654321 00000111 232333211 357789999999999983
No 72
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=52.21 E-value=15 Score=27.40 Aligned_cols=52 Identities=15% Similarity=0.194 Sum_probs=31.8
Q ss_pred HHHHHHHHHcCCCeEEEeeeecCCcccCCCCCCCCcccccCCCCCchHHHHHHHHhhcCCC
Q psy1381 39 NHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVDYTFGNWFTGGSP 99 (102)
Q Consensus 39 ~~Wa~l~k~aGakyvvlTtKHHdGF~lW~S~~~~~~~s~~~~p~rDiv~el~~a~~~~Gl~ 99 (102)
++++++++..|++.+++..-|. | +.......| .--.+.+++|++-+.++||.
T Consensus 93 ~~~i~~a~~lGa~~i~~~~~~~-~---~~~~~~~~~-----~~~~~~l~~l~~~a~~~gv~ 144 (275)
T PRK09856 93 KLAMDMAKEMNAGYTLISAAHA-G---YLTPPNVIW-----GRLAENLSELCEYAENIGMD 144 (275)
T ss_pred HHHHHHHHHhCCCEEEEcCCCC-C---CCCCHHHHH-----HHHHHHHHHHHHHHHHcCCE
Confidence 4577999999999998854322 2 111000001 01236788889999998873
No 73
>PRK15279 type III secretion protein SopE; Provisional
Probab=52.20 E-value=12 Score=29.09 Aligned_cols=42 Identities=12% Similarity=0.057 Sum_probs=28.4
Q ss_pred eEEEeeeecCCcccCCCCCCCCcccccCCCCCchHHHHHHHHhhcCCCCC
Q psy1381 52 YVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVDYTFGNWFTGGSPGK 101 (102)
Q Consensus 52 yvvlTtKHHdGF~lW~S~~~~~~~s~~~~p~rDiv~el~~a~~~~Gl~~~ 101 (102)
+.-+..++-|-||+=.-.-. .. -+-.++|+-+|+|.+||||.
T Consensus 115 lsavyS~~Kd~~c~ll~skg-----~~---i~pfLkeiGeAA~naGLPGe 156 (240)
T PRK15279 115 LSAVYSKNKDQCCNLLISKG-----IN---IAPFLQEIGEAAKNAGLPGT 156 (240)
T ss_pred HHHHHHHhHHHHHHHHHhcC-----CC---chHHHHHHHHHHHhCCCCCc
Confidence 34456677787776432222 01 13389999999999999995
No 74
>PRK05402 glycogen branching enzyme; Provisional
Probab=51.90 E-value=48 Score=29.35 Aligned_cols=60 Identities=12% Similarity=0.036 Sum_probs=37.0
Q ss_pred HHHHHHHHHcCCCeEEEeeeec-CCcccCCCCCCCCcccccCCC-CCchHHHHHHHHhhcCCC
Q psy1381 39 NHWADILASSGAKYVVLTSKHH-EGYTLWPSKYAFSWNSMDIGP-KRDLVDYTFGNWFTGGSP 99 (102)
Q Consensus 39 ~~Wa~l~k~aGakyvvlTtKHH-dGF~lW~S~~~~~~~s~~~~p-~rDiv~el~~a~~~~Gl~ 99 (102)
+.+++-++++|...|-|+-=.- .+-..|--..+ +|.+++..- ..+=+++|+++|+++||.
T Consensus 269 ~~l~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~-~y~ai~~~~Gt~~dfk~lV~~~H~~Gi~ 330 (726)
T PRK05402 269 DQLIPYVKEMGFTHVELLPIAEHPFDGSWGYQPT-GYYAPTSRFGTPDDFRYFVDACHQAGIG 330 (726)
T ss_pred HHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcc-cCCCcCcccCCHHHHHHHHHHHHHCCCE
Confidence 3456778999999998886531 11112332333 233333221 356799999999999984
No 75
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=51.68 E-value=17 Score=27.54 Aligned_cols=22 Identities=14% Similarity=0.223 Sum_probs=19.3
Q ss_pred CHHHHHHHHHHcCCCeEEEeee
Q psy1381 37 DANHWADILASSGAKYVVLTSK 58 (102)
Q Consensus 37 Dp~~Wa~l~k~aGakyvvlTtK 58 (102)
||+.|++.++++|+.++.+=..
T Consensus 69 ~p~~~i~~~~~~gad~i~~H~E 90 (220)
T PRK08883 69 PVDRIIPDFAKAGASMITFHVE 90 (220)
T ss_pred CHHHHHHHHHHhCCCEEEEccc
Confidence 6999999999999999887544
No 76
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=51.64 E-value=36 Score=27.39 Aligned_cols=67 Identities=15% Similarity=-0.024 Sum_probs=41.2
Q ss_pred cCCCCCC-CHHHHHHHHHHcCCCeEEEeeeecCCcccCCCCCC-CCcccccCCC-CCchHHHHHHHHhhcCCCC
Q psy1381 30 DFTAEFF-DANHWADILASSGAKYVVLTSKHHEGYTLWPSKYA-FSWNSMDIGP-KRDLVDYTFGNWFTGGSPG 100 (102)
Q Consensus 30 ~F~p~~f-Dp~~Wa~l~k~aGakyvvlTtKHHdGF~lW~S~~~-~~~~s~~~~p-~rDiv~el~~a~~~~Gl~~ 100 (102)
+|++++| ||++.++.+++.|+|.++.+--+-.--..|+.... .+++ .| -|+--.++.+...+.||.+
T Consensus 57 t~d~~~FPdp~~mv~~L~~~G~klv~~i~P~i~~g~~~~~~~~~pDft----np~ar~wW~~~~~~l~~~Gv~~ 126 (332)
T cd06601 57 TTNGGGFPNPKEMFDNLHNKGLKCSTNITPVISYGGGLGSPGLYPDLG----RPDVREWWGNQYKYLFDIGLEF 126 (332)
T ss_pred eecCCCCCCHHHHHHHHHHCCCeEEEEecCceecCccCCCCceeeCCC----CHHHHHHHHHHHHHHHhCCCce
Confidence 3467776 59999999999999999887665543334444332 1221 12 3455555555555567654
No 77
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=51.59 E-value=30 Score=25.17 Aligned_cols=20 Identities=20% Similarity=0.092 Sum_probs=17.6
Q ss_pred CCCCchHHHHHHHHhhcCCC
Q psy1381 80 GPKRDLVDYTFGNWFTGGSP 99 (102)
Q Consensus 80 ~p~rDiv~el~~a~~~~Gl~ 99 (102)
+.+.+++.+++++||++|+.
T Consensus 74 g~h~~l~~~lve~lre~G~~ 93 (143)
T COG2185 74 GGHLTLVPGLVEALREAGVE 93 (143)
T ss_pred chHHHHHHHHHHHHHHhCCc
Confidence 44789999999999999975
No 78
>PRK15280 type III secretion protein SopE2; Provisional
Probab=51.50 E-value=12 Score=28.99 Aligned_cols=42 Identities=12% Similarity=0.041 Sum_probs=28.5
Q ss_pred eEEEeeeecCCcccCCCCCCCCcccccCCCCCchHHHHHHHHhhcCCCCC
Q psy1381 52 YVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVDYTFGNWFTGGSPGK 101 (102)
Q Consensus 52 yvvlTtKHHdGF~lW~S~~~~~~~s~~~~p~rDiv~el~~a~~~~Gl~~~ 101 (102)
+.-+..++-|-||+-.-.-+.. .--.++|+-+|+|.+||||.
T Consensus 115 lsavyS~~Kd~~c~ll~~kG~~--------i~pfLkeiGeAA~naGLPGe 156 (240)
T PRK15280 115 LSAVYSNNKDQCCKLLISKGVS--------ITPFLKEIGEAAQNAGLPGE 156 (240)
T ss_pred HHHHHHHhHHHHHHHHHhcCCC--------ccHHHHHHHHHHHhCCCCCc
Confidence 3445667778777644322200 23479999999999999995
No 79
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=51.37 E-value=18 Score=27.47 Aligned_cols=25 Identities=12% Similarity=0.198 Sum_probs=21.4
Q ss_pred CCCCCCCHHHHHHHHHHcCCCeEEE
Q psy1381 31 FTAEFFDANHWADILASSGAKYVVL 55 (102)
Q Consensus 31 F~p~~fDp~~Wa~l~k~aGakyvvl 55 (102)
++|-..+|++|++.++++|+..+++
T Consensus 83 ~n~~~~~~~~~i~~~~~~Gadgvii 107 (244)
T PRK13125 83 LEDYVDSLDNFLNMARDVGADGVLF 107 (244)
T ss_pred cchhhhCHHHHHHHHHHcCCCEEEE
Confidence 3554669999999999999999998
No 80
>cd07373 2A5CPDO_A The alpha subunit of the Class III extradiol dioxygenase, 2-amino-5-chlorophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol. 2-amino-5-chlorophenol 1,6-dioxygenase (2A5CPDO) catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, which is an intermediate during p-chloronitrobenzene degradation. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. The active enzyme is probably a heterotetramer, composed of two alpha and two beta subunits. The alpha and beta subunits share significant sequence similarity and may have evolved by gene duplication. This model describes the alpha subunit, which does not contain a potential metal binding site and may not possess catalytic activity.
Probab=51.32 E-value=44 Score=25.82 Aligned_cols=61 Identities=16% Similarity=0.123 Sum_probs=39.6
Q ss_pred HHHHHHHHHcCCCeEEEeeeecC----CcccCCCCC------C---CCcccc--cCCCCCchHHHHHHHHhhcCCCC
Q psy1381 39 NHWADILASSGAKYVVLTSKHHE----GYTLWPSKY------A---FSWNSM--DIGPKRDLVDYTFGNWFTGGSPG 100 (102)
Q Consensus 39 ~~Wa~l~k~aGakyvvlTtKHHd----GF~lW~S~~------~---~~~~s~--~~~p~rDiv~el~~a~~~~Gl~~ 100 (102)
+++.+.++++.-+-+|+.+-|+. ++++ -+.. . .++.-. ......+|..++++.++++|++-
T Consensus 32 ~~lg~~l~~~~Pd~IvviS~Hw~~~~~~~~v-~~~~~~g~~~~~~~~df~g~p~~~~g~~eLA~~i~~~~~~~gi~~ 107 (271)
T cd07373 32 RQAGKALAASRPDVVLVYSTQWFAVLDQQWL-TRPRSEGVHVDENWHEFGELPYDIRSDTALAEACVTACPEHGVHA 107 (271)
T ss_pred HHHHHHHHHhCCCEEEEECCCCcccccceeE-eeccccccccccChhHhcCcccccCCCHHHHHHHHHHHHHCCCcE
Confidence 45566666678899999999975 4444 2211 0 011111 12236799999999999999874
No 81
>PRK03881 hypothetical protein; Provisional
Probab=50.79 E-value=34 Score=28.65 Aligned_cols=61 Identities=13% Similarity=0.089 Sum_probs=38.9
Q ss_pred HHHHHHHHcCCCeEEEeeeecC----CcccCCCCCC-CCcc-----c--ccCCCCCchHHHHHHHHhhcCCCC
Q psy1381 40 HWADILASSGAKYVVLTSKHHE----GYTLWPSKYA-FSWN-----S--MDIGPKRDLVDYTFGNWFTGGSPG 100 (102)
Q Consensus 40 ~Wa~l~k~aGakyvvlTtKHHd----GF~lW~S~~~-~~~~-----s--~~~~p~rDiv~el~~a~~~~Gl~~ 100 (102)
++.+.+.++..+-+|+.+-||. +|+++..... .+|. . .......++..+|++.+++.|++.
T Consensus 36 ~~~~~l~~~~Pd~IVVispH~~~~~~~~~i~~~~~~~gdf~~fg~~~v~~~~~~d~eLA~~i~~~~~~~g~~~ 108 (467)
T PRK03881 36 ELARRIAEKKPDTIIIISPHGPVFRDAVAISDGPRLKGDLGRFGAPEVSFSFKNDLELVEEIAEEAKKEGIPV 108 (467)
T ss_pred HHHHHHHHhCCCEEEEECCCcccccCcEEEecCcceeeehhccCCCCccccCCCCHHHHHHHHHHHHHcCCce
Confidence 3444445556788888888986 4556655431 1221 1 122235789999999999999864
No 82
>cd07951 ED_3B_N_AMMECR1 The N-terminal domain, an extradiol dioxygenase class III subunit B-like domain, of unknown proteins containing a C-terminal AMMECR1 domain. This subfamily is composed of uncharacterized proteins containing an N-terminal domain with similarity to the catalytic B subunit of class III extradiol dioxygenases and a C-terminal AMMECR1-like domain. This model represents the N-terminal domain. Class III extradiol dioxygenases use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon, however, proteins in this subfamily do not contain a potential metal binding site and may not exhibit class III extradiol dioxygenase-like activity. The AMMECR1 protein was proposed to be a regulatory factor that is potentially involved in the development of AMME contiguous gene deletion syndrome.
Probab=50.06 E-value=39 Score=25.44 Aligned_cols=61 Identities=18% Similarity=0.185 Sum_probs=37.5
Q ss_pred HHHHHHHHcCCCeEEEeeeecC----CcccCCCCCC-CCccc-----c--cCCCCCchHHHHHHHHhhcCCCC
Q psy1381 40 HWADILASSGAKYVVLTSKHHE----GYTLWPSKYA-FSWNS-----M--DIGPKRDLVDYTFGNWFTGGSPG 100 (102)
Q Consensus 40 ~Wa~l~k~aGakyvvlTtKHHd----GF~lW~S~~~-~~~~s-----~--~~~p~rDiv~el~~a~~~~Gl~~ 100 (102)
++.+.+++...+.+|+..-||- +|++...... .+|.. . ......++..+|.+..++.|++-
T Consensus 29 ~~~~~l~~~~pd~ivvvg~h~~~~~~~~~~~~~~~~~~~~~gf~~~~~~~~~~~d~~la~~l~~~l~~~g~~~ 101 (256)
T cd07951 29 AAARRLAAARPDTIVVVSPHAPVFRDAFAISTGGTLRGDFSRFGAPEVSFGVDLDLELVEEIAGEADKEGLPV 101 (256)
T ss_pred HHHHHHHHcCCCEEEEECCCcccccceeEeccCCceecchhhcCCCcceEeeeCCHHHHHHHHHHhhhcCCCc
Confidence 3444444566788999888985 5555554331 11110 0 12225788999999989888863
No 83
>PF02811 PHP: PHP domain; InterPro: IPR004013 The PHP (Polymerase and Histidinol Phosphatase) domain is a putative phosphoesterase domain. This family is often associated with an N-terminal region IPR003141 from INTERPRO.; GO: 0003824 catalytic activity; PDB: 2WJE_A 3QY8_A 2WJD_A 2WJF_A 1PB0_B 1M68_A 1M65_A 3E38_B 2W9M_A 3E0F_A ....
Probab=50.00 E-value=22 Score=24.09 Aligned_cols=24 Identities=8% Similarity=0.159 Sum_probs=20.9
Q ss_pred CCCHHHHHHHHHHcCCCeEEEeee
Q psy1381 35 FFDANHWADILASSGAKYVVLTSK 58 (102)
Q Consensus 35 ~fDp~~Wa~l~k~aGakyvvlTtK 58 (102)
..+|++.++.|++.|.+.+++|=.
T Consensus 15 ~~~~~e~v~~A~~~Gl~~i~iTDH 38 (175)
T PF02811_consen 15 KDSPEEYVEQAKEKGLDAIAITDH 38 (175)
T ss_dssp SSSHHHHHHHHHHTTESEEEEEEE
T ss_pred cCCHHHHHHHHHHcCCCEEEEcCC
Confidence 459999999999999998888754
No 84
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=49.62 E-value=32 Score=25.18 Aligned_cols=30 Identities=20% Similarity=0.277 Sum_probs=26.5
Q ss_pred CCCCHHHHHHHHHHcCCCeEEEeeeecCCc
Q psy1381 34 EFFDANHWADILASSGAKYVVLTSKHHEGY 63 (102)
Q Consensus 34 ~~fDp~~Wa~l~k~aGakyvvlTtKHHdGF 63 (102)
+..++.++++.+.++|+..+++|....+|-
T Consensus 144 ~~~~~~e~~~~~~~~g~~~ii~~~~~~~g~ 173 (233)
T PRK00748 144 SGVTAEDLAKRFEDAGVKAIIYTDISRDGT 173 (233)
T ss_pred CCCCHHHHHHHHHhcCCCEEEEeeecCcCC
Confidence 478999999999999999999998887764
No 85
>PRK06361 hypothetical protein; Provisional
Probab=49.60 E-value=30 Score=25.15 Aligned_cols=27 Identities=7% Similarity=0.035 Sum_probs=23.0
Q ss_pred CCCCCCHHHHHHHHHHcCCCeEEEeee
Q psy1381 32 TAEFFDANHWADILASSGAKYVVLTSK 58 (102)
Q Consensus 32 ~p~~fDp~~Wa~l~k~aGakyvvlTtK 58 (102)
+-....+++.++.|+++|.+.++||-.
T Consensus 6 sdg~~~~~e~v~~A~~~Gl~~i~iTDH 32 (212)
T PRK06361 6 SDGELIPSELVRRARVLGYRAIAITDH 32 (212)
T ss_pred cCCCCCHHHHHHHHHHcCCCEEEEecC
Confidence 335778999999999999999999853
No 86
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=49.28 E-value=54 Score=25.00 Aligned_cols=69 Identities=16% Similarity=0.152 Sum_probs=41.2
Q ss_pred HhhccCCCCCCCHHHHHHHHHHcCCCeEEEeeeecCCcccCCCCCCCCcccccCCCCCchHHHHHHHHhhcCCCC
Q psy1381 26 DFAKDFTAEFFDANHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVDYTFGNWFTGGSPG 100 (102)
Q Consensus 26 ~~a~~F~p~~fDp~~Wa~l~k~aGakyvvlTtKHHdGF~lW~S~~~~~~~s~~~~p~rDiv~el~~a~~~~Gl~~ 100 (102)
++...-+.+..| ++.++++++.|+.+|++... |-........ +|.. ...-..+.+.++++.+.++|++-
T Consensus 98 ~iINdis~~~~~-~~~~~l~~~~~~~vV~m~~~---~~~~~~~~~~-~~~~-~~~~~~~~~~~~i~~~~~~Gi~~ 166 (258)
T cd00423 98 DIINDVSGGRGD-PEMAPLAAEYGAPVVLMHMD---GTPQTMQNNP-YYAD-VVDEVVEFLEERVEAATEAGIPP 166 (258)
T ss_pred CEEEeCCCCCCC-hHHHHHHHHcCCCEEEECcC---CCCcccccCC-Ccch-HHHHHHHHHHHHHHHHHHcCCCH
Confidence 333444555556 78899999999988888643 3222222211 1110 00113577888889999999853
No 87
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=49.12 E-value=22 Score=28.01 Aligned_cols=28 Identities=32% Similarity=0.449 Sum_probs=23.4
Q ss_pred cCCCCCC-CHHHHHHHHHHcCCCeEEEee
Q psy1381 30 DFTAEFF-DANHWADILASSGAKYVVLTS 57 (102)
Q Consensus 30 ~F~p~~f-Dp~~Wa~l~k~aGakyvvlTt 57 (102)
.|++++| ||++.++.+++.|.|.++.+.
T Consensus 63 ~wd~~~FPdp~~mi~~L~~~G~k~~~~v~ 91 (317)
T cd06598 63 DWDRKAFPDPAGMIADLAKKGVKTIVITE 91 (317)
T ss_pred EeccccCCCHHHHHHHHHHcCCcEEEEEc
Confidence 3566655 899999999999999999874
No 88
>PRK08005 epimerase; Validated
Probab=48.62 E-value=20 Score=27.22 Aligned_cols=22 Identities=14% Similarity=0.434 Sum_probs=19.1
Q ss_pred CHHHHHHHHHHcCCCeEEEeee
Q psy1381 37 DANHWADILASSGAKYVVLTSK 58 (102)
Q Consensus 37 Dp~~Wa~l~k~aGakyvvlTtK 58 (102)
||+.|++.+.++|+.++.+=..
T Consensus 69 ~P~~~i~~~~~~gad~It~H~E 90 (210)
T PRK08005 69 SPQRWLPWLAAIRPGWIFIHAE 90 (210)
T ss_pred CHHHHHHHHHHhCCCEEEEccc
Confidence 5999999999999999887444
No 89
>PRK14057 epimerase; Provisional
Probab=48.37 E-value=20 Score=28.23 Aligned_cols=22 Identities=23% Similarity=0.271 Sum_probs=19.1
Q ss_pred CHHHHHHHHHHcCCCeEEEeee
Q psy1381 37 DANHWADILASSGAKYVVLTSK 58 (102)
Q Consensus 37 Dp~~Wa~l~k~aGakyvvlTtK 58 (102)
||+.|++.+.++|+.++.+=..
T Consensus 86 ~P~~~i~~~~~aGad~It~H~E 107 (254)
T PRK14057 86 DQWTAAQACVKAGAHCITLQAE 107 (254)
T ss_pred CHHHHHHHHHHhCCCEEEEeec
Confidence 6999999999999999887443
No 90
>cd07369 PydA_Rs_like PydA is a Class III Extradiol ring-cleavage dioxygenase required for the degradation of 3-hydroxy-4-pyridone (HP). This subfamily is composed of Rhizobium sp. PydA and similar proteins. PydA is required for the degradation of 3-hydroxy-4-pyridone (HP), an intermediate in the Leucaena toxin mimosine degradation pathway. It is a member of the class III extradiol dioxygenase family, a group of enzymes that use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.
Probab=48.09 E-value=44 Score=27.12 Aligned_cols=62 Identities=5% Similarity=-0.010 Sum_probs=44.3
Q ss_pred HHHHHHHHHcCCCeEEEe-eeecCC--------cccCCCCCC-CCcc-------c---ccCCCCCchHHHHHHHHhhcCC
Q psy1381 39 NHWADILASSGAKYVVLT-SKHHEG--------YTLWPSKYA-FSWN-------S---MDIGPKRDLVDYTFGNWFTGGS 98 (102)
Q Consensus 39 ~~Wa~l~k~aGakyvvlT-tKHHdG--------F~lW~S~~~-~~~~-------s---~~~~p~rDiv~el~~a~~~~Gl 98 (102)
+++.+.+++++..-+|+. +-|-.| ||+...+.- -+|. . .......+|..++++.+++.|+
T Consensus 36 ~~l~~~v~~~~PD~iVV~~sdH~~~~f~d~~P~f~I~~~~~~~G~~~~~~~~~~~~~~~~~~gd~eLA~~I~~~l~~~G~ 115 (329)
T cd07369 36 LKLGRTLTAARPDVIIAFLDDHFENHFRTNMPTIAIGVAESHSGPADQLMEALRVPKKHYFPGNPEVAEQLLRALVHDSF 115 (329)
T ss_pred HHHHHHHHHhCCCEEEEEcCCchhhhccccCccEEEeecceeeccchhccccCCCCcccCCCCCHHHHHHHHHHHHHCCC
Confidence 567778888999999994 888874 666666542 1222 1 2223368999999999999998
Q ss_pred CC
Q psy1381 99 PG 100 (102)
Q Consensus 99 ~~ 100 (102)
+-
T Consensus 116 dv 117 (329)
T cd07369 116 DC 117 (329)
T ss_pred Ce
Confidence 74
No 91
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=48.08 E-value=18 Score=26.91 Aligned_cols=50 Identities=22% Similarity=0.238 Sum_probs=32.0
Q ss_pred HHHHHHHHHHcCCCeEEEeeeecCCcccCCCCCCCCcccccCCC-CC-chHHHHHHHHhh-------cCCCC
Q psy1381 38 ANHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGP-KR-DLVDYTFGNWFT-------GGSPG 100 (102)
Q Consensus 38 p~~Wa~l~k~aGakyvvlTtKHHdGF~lW~S~~~~~~~s~~~~p-~r-Div~el~~a~~~-------~Gl~~ 100 (102)
=++.+.++++.|+.+|+++.. | +.. .+...+ .+ |++.++.+.+++ +|++-
T Consensus 105 ~~~~~~l~a~~~~~vV~m~~~---~-----~~~-----~~~~~~~~~~~~~~~i~~~~~~~i~~l~~~Gi~~ 163 (210)
T PF00809_consen 105 DPEMLPLAAEYGAPVVLMHSD---G-----NPK-----GMPETADYRLDIAEEIIEFLEERIEALEKAGIPR 163 (210)
T ss_dssp STTHHHHHHHHTSEEEEESES---S-----ETT-----TTTSSHHHSHSHHHHHHHHHHHHHHHHHHTT--G
T ss_pred cchhhhhhhcCCCEEEEEecc---c-----ccc-----cccccchhhhhHHHHHHHHHHHHHHHHHHcCCCH
Confidence 367889999999988887665 1 011 111122 34 899999888887 79964
No 92
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=47.83 E-value=21 Score=27.25 Aligned_cols=22 Identities=14% Similarity=0.223 Sum_probs=19.2
Q ss_pred CHHHHHHHHHHcCCCeEEEeee
Q psy1381 37 DANHWADILASSGAKYVVLTSK 58 (102)
Q Consensus 37 Dp~~Wa~l~k~aGakyvvlTtK 58 (102)
||+.|++.++++|+.++.+=..
T Consensus 73 ~P~~~i~~~~~~gad~I~~H~E 94 (223)
T PRK08745 73 PVDRIVPDFADAGATTISFHPE 94 (223)
T ss_pred CHHHHHHHHHHhCCCEEEEccc
Confidence 6999999999999999887444
No 93
>PF11360 DUF3110: Protein of unknown function (DUF3110); InterPro: IPR021503 This family of proteins has no known function.
Probab=47.61 E-value=24 Score=23.40 Aligned_cols=27 Identities=22% Similarity=0.353 Sum_probs=24.1
Q ss_pred CCCCCCHHHHHHHHHHcCCCeEEEeee
Q psy1381 32 TAEFFDANHWADILASSGAKYVVLTSK 58 (102)
Q Consensus 32 ~p~~fDp~~Wa~l~k~aGakyvvlTtK 58 (102)
+.+..|+++....++++|.+|.|+..-
T Consensus 51 ~Ve~id~~~i~~fC~~~gy~~~iv~~g 77 (86)
T PF11360_consen 51 TVEEIDPEEIEEFCRSAGYEYEIVPPG 77 (86)
T ss_pred CeEEECHHHHHHHHHHCCceEEEECCC
Confidence 557999999999999999999998753
No 94
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=47.59 E-value=22 Score=27.56 Aligned_cols=28 Identities=21% Similarity=0.342 Sum_probs=22.5
Q ss_pred cCCCCCC-CHHHHHHHHHHcCCCeEEEee
Q psy1381 30 DFTAEFF-DANHWADILASSGAKYVVLTS 57 (102)
Q Consensus 30 ~F~p~~f-Dp~~Wa~l~k~aGakyvvlTt 57 (102)
.|++++| ||++.++.+++.|++.++.+.
T Consensus 59 ~~d~~~FPd~~~~i~~l~~~G~~~~~~~~ 87 (308)
T cd06593 59 EFDPDRFPDPEGMLSRLKEKGFKVCLWIN 87 (308)
T ss_pred EECcccCCCHHHHHHHHHHCCCeEEEEec
Confidence 3466655 899999999999999877654
No 95
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=47.58 E-value=34 Score=24.97 Aligned_cols=55 Identities=13% Similarity=-0.090 Sum_probs=35.9
Q ss_pred CHHHHHHHHHHcCCCeEEEeeeecCCcccCCCCCCCCcccccCCCCCchHHHHHHHHhhcCC
Q psy1381 37 DANHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVDYTFGNWFTGGS 98 (102)
Q Consensus 37 Dp~~Wa~l~k~aGakyvvlTtKHHdGF~lW~S~~~~~~~s~~~~p~rDiv~el~~a~~~~Gl 98 (102)
..++..+.++++|++.|=|-.- |..-........-.....+-+.+++++|+++||
T Consensus 22 ~~~~~~~~~~~~G~n~VRi~v~-------~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi 76 (281)
T PF00150_consen 22 ITEADFDQLKALGFNTVRIPVG-------WEAYQEPNPGYNYDETYLARLDRIVDAAQAYGI 76 (281)
T ss_dssp SHHHHHHHHHHTTESEEEEEEE-------STSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-
T ss_pred CHHHHHHHHHHCCCCEEEeCCC-------HHHhcCCCCCccccHHHHHHHHHHHHHHHhCCC
Confidence 7899999999999999866654 322221000000011245788999999999997
No 96
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=47.55 E-value=40 Score=25.46 Aligned_cols=20 Identities=30% Similarity=0.511 Sum_probs=16.0
Q ss_pred CCCCHHHHHHHHHHcCCCeEE
Q psy1381 34 EFFDANHWADILASSGAKYVV 54 (102)
Q Consensus 34 ~~fDp~~Wa~l~k~aGakyvv 54 (102)
+=.++++ ++.+.++||+|+|
T Consensus 74 TV~~~~~-~~~a~~aGA~Fiv 93 (213)
T PRK06552 74 TVLDAVT-ARLAILAGAQFIV 93 (213)
T ss_pred eCCCHHH-HHHHHHcCCCEEE
Confidence 4567776 5889999999988
No 97
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation.
Probab=46.94 E-value=19 Score=19.44 Aligned_cols=16 Identities=13% Similarity=-0.068 Sum_probs=14.0
Q ss_pred HHHHHHHHhhcCCCCC
Q psy1381 86 VDYTFGNWFTGGSPGK 101 (102)
Q Consensus 86 v~el~~a~~~~Gl~~~ 101 (102)
+.+|-+.|+..|||-.
T Consensus 6 ~~~Lk~~l~~~gl~~~ 21 (35)
T smart00513 6 VSELKDELKKRGLSTS 21 (35)
T ss_pred HHHHHHHHHHcCCCCC
Confidence 7899999999999853
No 98
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=46.62 E-value=40 Score=27.74 Aligned_cols=51 Identities=18% Similarity=0.148 Sum_probs=38.6
Q ss_pred CCCCHHHHHHHHHHcCCCeEEEeeeecCCcccCCCCCCCCcccccCCCCCchHHHHHHHHhhcCCC
Q psy1381 34 EFFDANHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVDYTFGNWFTGGSP 99 (102)
Q Consensus 34 ~~fDp~~Wa~l~k~aGakyvvlTtKHHdGF~lW~S~~~~~~~s~~~~p~rDiv~el~~a~~~~Gl~ 99 (102)
..|++++-.+.+++.|.... .-++-.+||-... -.|||.-|..+|++.|+.
T Consensus 52 ~~f~~~d~~~fF~~~Gi~~~-----~e~~grvfP~S~~----------A~sVv~~L~~~l~~~gV~ 102 (376)
T TIGR03862 52 EAFDAVALQDWARGLGIETF-----VGSSGRVFPVEMK----------AAPLLRAWLKRLAEQGVQ 102 (376)
T ss_pred HhCCHHHHHHHHHHCCCceE-----ECCCCEECCCCCC----------HHHHHHHHHHHHHHCCCE
Confidence 37889999999999998533 3344478873322 279999999999999974
No 99
>cd07368 PhnC_Bs_like PhnC is a Class III Extradiol ring-cleavage dioxygenase involved in the polycyclic aromatic hydrocarbon (PAH) catabolic pathway. This subfamily is composed of Burkholderia sp. PhnC and similar poteins. PhnC is one of nine protein products encoded by the phn locus. These proteins are involved in the polycyclic aromatic hydrocarbon (PAH) catabolic pathway. PhnC is a member of the class III extradiol dioxygenase family, a group os enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.
Probab=46.46 E-value=65 Score=25.11 Aligned_cols=62 Identities=15% Similarity=0.073 Sum_probs=40.6
Q ss_pred HHHHHHHHHcCCCeEEEeeeec-CCcc--------cCCCCCCCCcc------cccCCCCCchHHHHHHHHhhcCCCC
Q psy1381 39 NHWADILASSGAKYVVLTSKHH-EGYT--------LWPSKYAFSWN------SMDIGPKRDLVDYTFGNWFTGGSPG 100 (102)
Q Consensus 39 ~~Wa~l~k~aGakyvvlTtKHH-dGF~--------lW~S~~~~~~~------s~~~~p~rDiv~el~~a~~~~Gl~~ 100 (102)
+++.+.+++++..-+|+.+.|| -.|- +...+...+|. .+......+|..++++.+++.|++-
T Consensus 36 ~~~~~~v~~~~pD~ivvi~~dH~~~f~~~~~P~f~i~~~~~~g~~~~~~~~~~~~~~g~~eLA~~i~~~l~~~g~~~ 112 (277)
T cd07368 36 AICAERLAALQVTSVVVIGDDHYTLFGTYCLPMYLIGTGDVDGPYDPLPGLPRAVIENNEPLAHHIMQHGLEYGIDW 112 (277)
T ss_pred HHHHHHHHHcCCCEEEEEcCchHhhhhhccCCceEEecccccCCccccCCCCcccCcCCHHHHHHHHHHHHHcCCCE
Confidence 6778888999999999998665 4432 22222211221 1122336789999999999999863
No 100
>PRK15278 type III secretion protein BopE; Provisional
Probab=45.95 E-value=17 Score=28.34 Aligned_cols=17 Identities=18% Similarity=0.196 Sum_probs=16.0
Q ss_pred hHHHHHHHHhhcCCCCC
Q psy1381 85 LVDYTFGNWFTGGSPGK 101 (102)
Q Consensus 85 iv~el~~a~~~~Gl~~~ 101 (102)
.++||-+|+|.+||||.
T Consensus 145 FLkEiGEAAqnAGLPGe 161 (261)
T PRK15278 145 FIEALGDAARATGLPGA 161 (261)
T ss_pred HHHHHHHHHHhCCCCCc
Confidence 79999999999999995
No 101
>PRK03745 signal recognition particle protein Srp19; Provisional
Probab=45.68 E-value=48 Score=22.70 Aligned_cols=65 Identities=11% Similarity=-0.098 Sum_probs=41.8
Q ss_pred cCCCCCCCHHHHHHHHHHcCCCeE-EEeeeecCCc---ccCCCCCCCCcccccCCCCCchHHHHHHHHhh
Q psy1381 30 DFTAEFFDANHWADILASSGAKYV-VLTSKHHEGY---TLWPSKYAFSWNSMDIGPKRDLVDYTFGNWFT 95 (102)
Q Consensus 30 ~F~p~~fDp~~Wa~l~k~aGakyv-vlTtKHHdGF---~lW~S~~~~~~~s~~~~p~rDiv~el~~a~~~ 95 (102)
.+.-++=..++.+++++..|..++ +=..|+|--. .-|--..+ ..-....+++++|++.+++..++
T Consensus 26 ~~aV~~P~~~EI~~a~~~lgl~~~~~E~~K~yPr~~g~~~~~~~~G-rv~V~~~~~K~~ll~~Ia~~ik~ 94 (100)
T PRK03745 26 NLAVERPTLEEIVDAAEALGFKVIEVDREKLNPRLSGIDEELRTRG-RIVIESPYGKSKSLKMIAQKIRE 94 (100)
T ss_pred HHcccCCCHHHHHHHHHHcCCCcEeeccCCCCCCccCCccchhcCC-EEEecCCCCHHHHHHHHHHHHHH
Confidence 334455567999999999999996 5556777432 22322222 11122446789999999887665
No 102
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=45.55 E-value=48 Score=27.18 Aligned_cols=54 Identities=20% Similarity=0.103 Sum_probs=36.3
Q ss_pred CCCCHHHHHHHHHHcCCCeEEEeeeecCCcccCCCCCCCCcccccCCCCCchHHHHHHHHhhcCCC
Q psy1381 34 EFFDANHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVDYTFGNWFTGGSP 99 (102)
Q Consensus 34 ~~fDp~~Wa~l~k~aGakyvvlTtKHHdGF~lW~S~~~~~~~s~~~~p~rDiv~el~~a~~~~Gl~ 99 (102)
...|+.+.++.++++|+..|-| |.+. +||-..+. .-....++++.++++++||.
T Consensus 30 ~~~~~~e~i~~la~~GfdgVE~---~~~d--l~P~~~~~-------~e~~~~~~~lk~~L~~~GL~ 83 (382)
T TIGR02631 30 TALDPVEAVHKLAELGAYGVTF---HDDD--LIPFGAPP-------QERDQIVRRFKKALDETGLK 83 (382)
T ss_pred CCcCHHHHHHHHHHhCCCEEEe---cccc--cCCCCCCh-------hHHHHHHHHHHHHHHHhCCe
Confidence 3469999999999999998865 2222 23322210 00134588999999999986
No 103
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=45.40 E-value=13 Score=29.83 Aligned_cols=17 Identities=18% Similarity=0.096 Sum_probs=14.4
Q ss_pred CchHHHHHHHHhhcCCC
Q psy1381 83 RDLVDYTFGNWFTGGSP 99 (102)
Q Consensus 83 rDiv~el~~a~~~~Gl~ 99 (102)
.||+.+|.+||.++|+|
T Consensus 160 ~dIf~DLleAa~kR~Vp 176 (284)
T PF07894_consen 160 VDIFCDLLEAANKRGVP 176 (284)
T ss_pred HHHHHHHHHHHHhcCCc
Confidence 47888889999888887
No 104
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=45.13 E-value=71 Score=22.65 Aligned_cols=48 Identities=10% Similarity=0.005 Sum_probs=35.1
Q ss_pred CCCCCHHHHHHHHHHcCCCeEEEeeeecCCcccCCCCCCCCcccccCCCCCchHHHHHHHHhhcCCCC
Q psy1381 33 AEFFDANHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVDYTFGNWFTGGSPG 100 (102)
Q Consensus 33 p~~fDp~~Wa~l~k~aGakyvvlTtKHHdGF~lW~S~~~~~~~s~~~~p~rDiv~el~~a~~~~Gl~~ 100 (102)
...-.|++.++.+++-++.-+.+.+-= +.....++++.+.++++|+.+
T Consensus 36 G~~v~~e~~v~aa~~~~adiVglS~l~--------------------~~~~~~~~~~~~~l~~~gl~~ 83 (134)
T TIGR01501 36 GVLSPQEEFIKAAIETKADAILVSSLY--------------------GHGEIDCKGLRQKCDEAGLEG 83 (134)
T ss_pred CCCCCHHHHHHHHHHcCCCEEEEeccc--------------------ccCHHHHHHHHHHHHHCCCCC
Confidence 345568999999999999988875321 223556788888888888754
No 105
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=44.60 E-value=24 Score=27.95 Aligned_cols=30 Identities=10% Similarity=0.261 Sum_probs=24.1
Q ss_pred cCCCCCC-CHHHHHHHHHHcCCCeEEEeeee
Q psy1381 30 DFTAEFF-DANHWADILASSGAKYVVLTSKH 59 (102)
Q Consensus 30 ~F~p~~f-Dp~~Wa~l~k~aGakyvvlTtKH 59 (102)
+|++++| ||++.++.+++.|+|.++.+--+
T Consensus 64 ~~d~~~FPdp~~mi~~Lh~~G~~~~~~i~P~ 94 (317)
T cd06594 64 EWDPERYPGLDELIEELKARGIRVLTYINPY 94 (317)
T ss_pred EEChhhCCCHHHHHHHHHHCCCEEEEEecCc
Confidence 5577655 89999999999999998876433
No 106
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=44.53 E-value=23 Score=28.89 Aligned_cols=47 Identities=15% Similarity=0.060 Sum_probs=30.6
Q ss_pred HHHHHHcCCCeEEEeeeecCCcccCCCCCCCCcccccCCCCCchHHHHHHHHhhcCCC
Q psy1381 42 ADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVDYTFGNWFTGGSP 99 (102)
Q Consensus 42 a~l~k~aGakyvvlTtKHHdGF~lW~S~~~~~~~s~~~~p~rDiv~el~~a~~~~Gl~ 99 (102)
++-++++||.-|.+..-.+. +.... + ..-+...|+++.+.|++.|||
T Consensus 112 ve~a~~~GAdAVk~lv~~~~-------d~~~~---~-~~~~~~~l~rv~~ec~~~giP 158 (340)
T PRK12858 112 VRRIKEAGADAVKLLLYYRP-------DEDDA---I-NDRKHAFVERVGAECRANDIP 158 (340)
T ss_pred HHHHHHcCCCEEEEEEEeCC-------CcchH---H-HHHHHHHHHHHHHHHHHcCCc
Confidence 56678888887777765551 11100 0 011345799999999999998
No 107
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=44.51 E-value=48 Score=25.78 Aligned_cols=43 Identities=9% Similarity=0.058 Sum_probs=33.6
Q ss_pred CCCCHHHHHHHHHHcCCCeEEEeeeecCCcccCCCCCCCCcccccCCCCCchHHHHHHHHhhcCCC
Q psy1381 34 EFFDANHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVDYTFGNWFTGGSP 99 (102)
Q Consensus 34 ~~fDp~~Wa~l~k~aGakyvvlTtKHHdGF~lW~S~~~~~~~s~~~~p~rDiv~el~~a~~~~Gl~ 99 (102)
-++..+..++.++++|+.-+++. | . + -|=..+++++|+++||.
T Consensus 102 ~~~G~e~f~~~~~~aGvdGviip----D--------L---------p--~ee~~~~~~~~~~~gl~ 144 (258)
T PRK13111 102 FQYGVERFAADAAEAGVDGLIIP----D--------L---------P--PEEAEELRAAAKKHGLD 144 (258)
T ss_pred hhcCHHHHHHHHHHcCCcEEEEC----C--------C---------C--HHHHHHHHHHHHHcCCc
Confidence 35677899999999999999984 1 1 1 25677899999999975
No 108
>PRK10658 putative alpha-glucosidase; Provisional
Probab=44.32 E-value=21 Score=31.57 Aligned_cols=28 Identities=21% Similarity=0.334 Sum_probs=24.2
Q ss_pred cCCCCCC-CHHHHHHHHHHcCCCeEEEee
Q psy1381 30 DFTAEFF-DANHWADILASSGAKYVVLTS 57 (102)
Q Consensus 30 ~F~p~~f-Dp~~Wa~l~k~aGakyvvlTt 57 (102)
+|++++| ||++.++.+++.|.|-++.+-
T Consensus 318 ~wd~~~FPdp~~mi~~L~~~G~k~~~~i~ 346 (665)
T PRK10658 318 EWDPRTFPDPEGMLKRLKAKGLKICVWIN 346 (665)
T ss_pred EEChhhCCCHHHHHHHHHHCCCEEEEecc
Confidence 5678888 999999999999999877653
No 109
>cd07372 2A5CPDO_B The beta subunit of the Class III extradiol dioxygenase, 2-amino-5-chlorophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol. 2-amino-5-chlorophenol 1,6-dioxygenase (2A5CPDO), catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, which is an intermediate during p-chloronitrobenzene degradation. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. The active 2A5CPDO enzyme is probably a heterotetramer, composed of two alpha and two beta subunits. The alpha and beta subunits share significant sequence similarity and may have evolved by gene duplication. This model describes the beta subunit, which contains a putative metal binding site with two conserved histidines; these residues are equivalent to two out of three Fe(II) bindin
Probab=44.32 E-value=72 Score=25.28 Aligned_cols=62 Identities=10% Similarity=-0.015 Sum_probs=40.0
Q ss_pred HHHHHHHHHcCCCeEEEeeeecCC---cccCCCC-----CC-CC-ccc--cc--CCCCCchHHHHHHHHhhcCCCC
Q psy1381 39 NHWADILASSGAKYVVLTSKHHEG---YTLWPSK-----YA-FS-WNS--MD--IGPKRDLVDYTFGNWFTGGSPG 100 (102)
Q Consensus 39 ~~Wa~l~k~aGakyvvlTtKHHdG---F~lW~S~-----~~-~~-~~s--~~--~~p~rDiv~el~~a~~~~Gl~~ 100 (102)
++..+.+++.+.+-+|+++-|+-= +.+.... .+ +. ... .. .....+|..++++.+++.|++-
T Consensus 40 ~~~~~~i~~~~Pd~IVViSpHw~~~~~~~~~~~p~~~G~~~~~~~p~~~~~~~~~~gd~eLA~~i~~~~~~~Gi~~ 115 (294)
T cd07372 40 ERARESIEALKPDVLLVHSPHWITSVGHHFLGVPELSGRSVDPIFPNLFRYDFSMNVDVELAEACCEEGRKAGLVT 115 (294)
T ss_pred HHHHHHHHHcCCCEEEEECCCcccccCeeeecCCcccccccccccccceeeccCCCCCHHHHHHHHHHHHHCCCCe
Confidence 567788899999999999999531 1221111 11 00 000 11 1236899999999999999974
No 110
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=44.18 E-value=42 Score=24.54 Aligned_cols=31 Identities=16% Similarity=0.218 Sum_probs=26.4
Q ss_pred CCCCCHHHHHHHHHHcCCCeEEEeeeecCCc
Q psy1381 33 AEFFDANHWADILASSGAKYVVLTSKHHEGY 63 (102)
Q Consensus 33 p~~fDp~~Wa~l~k~aGakyvvlTtKHHdGF 63 (102)
.+..++.++++.+.+.|+.+++++....+|-
T Consensus 143 ~~~~~~~~~~~~~~~~ga~~iii~~~~~~g~ 173 (234)
T cd04732 143 TSEVSLEELAKRFEELGVKAIIYTDISRDGT 173 (234)
T ss_pred ecCCCHHHHHHHHHHcCCCEEEEEeecCCCc
Confidence 3577999999999999999999987766654
No 111
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=44.13 E-value=41 Score=25.55 Aligned_cols=55 Identities=13% Similarity=0.165 Sum_probs=38.8
Q ss_pred ChHHHHHHHHhCCCCCChH-------H-hhccC-CCCCCCHHHHHHHHHHcCCCeEEEeeeecCC
Q psy1381 7 NSTVTKFMERNYKPGFTYQ-------D-FAKDF-TAEFFDANHWADILASSGAKYVVLTSKHHEG 62 (102)
Q Consensus 7 ~~~y~~~~~~~~~~~~~Y~-------~-~a~~F-~p~~fDp~~Wa~l~k~aGakyvvlTtKHHdG 62 (102)
|++..+-+.+.|+.+ -+- . ..+.| ..+..++.+|++.+.+.|++.+++|.-..||
T Consensus 111 ~~~~l~~~~~~fg~~-ivvslD~~~g~v~~~gw~~~~~~~~~~~~~~~~~~g~~~ii~tdi~~dG 174 (234)
T PRK13587 111 DTDWLKEMAHTFPGR-IYLSVDAYGEDIKVNGWEEDTELNLFSFVRQLSDIPLGGIIYTDIAKDG 174 (234)
T ss_pred CHHHHHHHHHHcCCC-EEEEEEeeCCEEEecCCcccCCCCHHHHHHHHHHcCCCEEEEecccCcC
Confidence 566666666666522 111 1 12233 3468899999999999999999999999987
No 112
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=44.04 E-value=38 Score=25.20 Aligned_cols=31 Identities=32% Similarity=0.478 Sum_probs=26.4
Q ss_pred CCCCCCHHHHHHHHHHcCCCeEEEeeeecCC
Q psy1381 32 TAEFFDANHWADILASSGAKYVVLTSKHHEG 62 (102)
Q Consensus 32 ~p~~fDp~~Wa~l~k~aGakyvvlTtKHHdG 62 (102)
..+..++.++++.+.++|+.+++++..+.+|
T Consensus 145 ~~~~~~~~~~~~~l~~~G~d~i~v~~i~~~g 175 (243)
T cd04731 145 KPTGLDAVEWAKEVEELGAGEILLTSMDRDG 175 (243)
T ss_pred eecCCCHHHHHHHHHHCCCCEEEEeccCCCC
Confidence 4457788999999999999999998877655
No 113
>PF12706 Lactamase_B_2: Beta-lactamase superfamily domain; PDB: 3BV6_F 1WW1_A 2E7Y_A 3RPC_D 3ZWF_A 3JXP_A 1XTO_A 2CBN_A 3G1P_B 3P2U_A ....
Probab=43.99 E-value=33 Score=23.61 Aligned_cols=27 Identities=15% Similarity=0.076 Sum_probs=23.6
Q ss_pred cCCCCCCCHHHHHHHHHHcCCCeEEEe
Q psy1381 30 DFTAEFFDANHWADILASSGAKYVVLT 56 (102)
Q Consensus 30 ~F~p~~fDp~~Wa~l~k~aGakyvvlT 56 (102)
.-.+...++++.++++++.++|.+|++
T Consensus 166 ~~~~~h~~~~~~~~~~~~~~~~~~il~ 192 (194)
T PF12706_consen 166 ARGPGHMTLEEALELAKELKAKKVILI 192 (194)
T ss_dssp HCCTTSBBHHHHHHHHHHHTTSEEEEE
T ss_pred ccCCCCCCHHHHHHHHHHcCCCEEEEE
Confidence 344778899999999999999999986
No 114
>PF13069 DUF3933: Protein of unknown function (DUF3933)
Probab=43.88 E-value=15 Score=22.36 Aligned_cols=17 Identities=41% Similarity=0.829 Sum_probs=14.9
Q ss_pred HcCCCeEEEeeeecCCc
Q psy1381 47 SSGAKYVVLTSKHHEGY 63 (102)
Q Consensus 47 ~aGakyvvlTtKHHdGF 63 (102)
+.|-+|+|+|++--+|.
T Consensus 36 rtg~ry~vitaeea~gl 52 (53)
T PF13069_consen 36 RTGNRYVVITAEEAEGL 52 (53)
T ss_pred ccCCEEEEEEehhhccC
Confidence 56899999999998885
No 115
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=43.55 E-value=15 Score=27.53 Aligned_cols=21 Identities=19% Similarity=0.575 Sum_probs=17.3
Q ss_pred CHHHHHHHHHHcCCCeEEEee
Q psy1381 37 DANHWADILASSGAKYVVLTS 57 (102)
Q Consensus 37 Dp~~Wa~l~k~aGakyvvlTt 57 (102)
||+.|++.++++|+.++.+=.
T Consensus 68 ~P~~~i~~~~~~g~~~i~~H~ 88 (201)
T PF00834_consen 68 NPERYIEEFAEAGADYITFHA 88 (201)
T ss_dssp SGGGHHHHHHHHT-SEEEEEG
T ss_pred cHHHHHHHHHhcCCCEEEEcc
Confidence 689999999999999887743
No 116
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=42.99 E-value=98 Score=23.70 Aligned_cols=55 Identities=13% Similarity=0.117 Sum_probs=30.3
Q ss_pred CCCHHHHHHHHH---HcCCCeEEEeeeecCCcccCCCCCCCCcccccCCCCCchHHHHHHHHhhc-CCC
Q psy1381 35 FFDANHWADILA---SSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVDYTFGNWFTG-GSP 99 (102)
Q Consensus 35 ~fDp~~Wa~l~k---~aGakyvvlTtKHHdGF~lW~S~~~~~~~s~~~~p~rDiv~el~~a~~~~-Gl~ 99 (102)
..++++|+++++ ++|+.++-|..- +..+... ....+...+++.|+++++|+. ++|
T Consensus 98 g~~~~~~~~~a~~~~~~G~d~iElN~~---------cP~~~~~-g~~~~~~~~~~~eiv~~vr~~~~~P 156 (296)
T cd04740 98 GSTVEEFVEVAEKLADAGADAIELNIS---------CPNVKGG-GMAFGTDPEAVAEIVKAVKKATDVP 156 (296)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEECC---------CCCCCCC-cccccCCHHHHHHHHHHHHhccCCC
Confidence 346888887766 579999888621 1111000 011122346777777777766 444
No 117
>PF07775 PaRep2b: PaRep2b protein; InterPro: IPR011689 This is a group of proteins, expressed in the crenarchaeon Pyrobaculum aerophilum, whose members are variable in length and level of conservation. The presence of numerous frameshifts and internal stop codons in multiple alignments are thought to indicate that most family members are no longer functional [].
Probab=42.70 E-value=18 Score=31.46 Aligned_cols=70 Identities=16% Similarity=0.105 Sum_probs=48.9
Q ss_pred HhhccCCCCCCCHHHHHHHHHHcCCCeEEEeeeecCCcccCCCCCCCC-cccccCCCCCchHHHHHHHHhhcCCCC
Q psy1381 26 DFAKDFTAEFFDANHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFS-WNSMDIGPKRDLVDYTFGNWFTGGSPG 100 (102)
Q Consensus 26 ~~a~~F~p~~fDp~~Wa~l~k~aGakyvvlTtKHHdGF~lW~S~~~~~-~~s~~~~p~rDiv~el~~a~~~~Gl~~ 100 (102)
.+-..|..++=+++..|..+...|++-- +-+|.++ |--..+.+ ..++.....++-|++|++.|++.|+=+
T Consensus 107 ~L~a~F~gsRE~AErlAsILrAlG~~aE--vk~~g~~---W~V~l~Td~IaAirh~ewl~AV~~fVeel~~~G~I~ 177 (512)
T PF07775_consen 107 SLRAQFGGSREKAERLASILRALGAEAE--VKKYGGE---WRVVLTTDSIAAIRHPEWLEAVRAFVEELHEKGVIS 177 (512)
T ss_pred EEEEEecccHHHHHHHHHHHHhcCCeeE--EEEcCCe---EEEEEEeCcchhcccHHHHHHHHHHHHHHhhccccc
Confidence 4556899999999999999999997632 3344443 44444322 223333336899999999999999854
No 118
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=42.40 E-value=69 Score=29.63 Aligned_cols=61 Identities=8% Similarity=-0.041 Sum_probs=38.2
Q ss_pred HHHHHHHHHHcCCCeEEEeeeecC-CcccCCCCCCCCcccccCC-CCCchHHHHHHHHhhcCCC
Q psy1381 38 ANHWADILASSGAKYVVLTSKHHE-GYTLWPSKYAFSWNSMDIG-PKRDLVDYTFGNWFTGGSP 99 (102)
Q Consensus 38 p~~Wa~l~k~aGakyvvlTtKHHd-GF~lW~S~~~~~~~s~~~~-p~rDiv~el~~a~~~~Gl~ 99 (102)
..+.+.-+++.|+..+.++--... .-..+--.+. +|..++.. ...+=+++|+++|+++||-
T Consensus 22 ~~~~l~YL~~LGis~IyLsPi~~a~~gs~hGYdv~-D~~~idp~lGt~e~f~~Lv~aah~~Gi~ 84 (879)
T PRK14511 22 AAELVPYFADLGVSHLYLSPILAARPGSTHGYDVV-DHTRINPELGGEEGLRRLAAALRAHGMG 84 (879)
T ss_pred HHHHhHHHHHcCCCEEEECcCccCCCCCCCCCCcC-CCCCcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 466777889999999988764321 1111111222 23333322 1457899999999999983
No 119
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=42.12 E-value=16 Score=27.55 Aligned_cols=51 Identities=10% Similarity=0.010 Sum_probs=31.6
Q ss_pred HHHHHHHHHcCCCeEEEeeeecCCcccCCCCCCCCcccccCCCCCchHHHHHHHHhhcCCC
Q psy1381 39 NHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVDYTFGNWFTGGSP 99 (102)
Q Consensus 39 ~~Wa~l~k~aGakyvvlTtKHHdGF~lW~S~~~~~~~s~~~~p~rDiv~el~~a~~~~Gl~ 99 (102)
..++++|++.|++++++..-+..+ .. . .....--.+.++++++.++++|+.
T Consensus 88 ~~~i~~A~~lG~~~v~~~~g~~~~-------~~--~-~~~~~~~~~~l~~l~~~a~~~gi~ 138 (279)
T cd00019 88 KDEIERCEELGIRLLVFHPGSYLG-------QS--K-EEGLKRVIEALNELIDKAETKGVV 138 (279)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCC-------CC--H-HHHHHHHHHHHHHHHHhccCCCCE
Confidence 789999999999998883322111 00 0 000001247788888888888873
No 120
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=42.08 E-value=76 Score=24.91 Aligned_cols=51 Identities=12% Similarity=-0.035 Sum_probs=36.4
Q ss_pred HHHHHHHHHcCCCeEEEeeeecCCcccCCCCCCCCcccccCCCCCchHHHHHHHHhhcCCCC
Q psy1381 39 NHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVDYTFGNWFTGGSPG 100 (102)
Q Consensus 39 ~~Wa~l~k~aGakyvvlTtKHHdGF~lW~S~~~~~~~s~~~~p~rDiv~el~~a~~~~Gl~~ 100 (102)
-+-|+.++++|+.++== ..|+..++ . ....|++.+=+++|.+.|++.|||-
T Consensus 32 ~~~a~~~~~~g~~~~r~--------g~~kpRts-~--~sf~G~G~~gl~~L~~~~~~~Gl~~ 82 (250)
T PRK13397 32 RLAASSAKKLGYNYFRG--------GAYKPRTS-A--ASFQGLGLQGIRYLHEVCQEFGLLS 82 (250)
T ss_pred HHHHHHHHHcCCCEEEe--------cccCCCCC-C--cccCCCCHHHHHHHHHHHHHcCCCE
Confidence 34566688888866532 35665555 2 1256778889999999999999983
No 121
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=41.75 E-value=90 Score=23.37 Aligned_cols=24 Identities=13% Similarity=-0.032 Sum_probs=20.1
Q ss_pred CCCCCHHHHHHHHHHcCCCeEEEe
Q psy1381 33 AEFFDANHWADILASSGAKYVVLT 56 (102)
Q Consensus 33 p~~fDp~~Wa~l~k~aGakyvvlT 56 (102)
++.++.++-+++++++|.++|=|.
T Consensus 18 ~~~~~~~e~~~~~~~~G~~~iEl~ 41 (283)
T PRK13209 18 PAGECWLEKLAIAKTAGFDFVEMS 41 (283)
T ss_pred CCCCCHHHHHHHHHHcCCCeEEEe
Confidence 456788899999999999999885
No 122
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=41.19 E-value=29 Score=27.32 Aligned_cols=26 Identities=23% Similarity=0.307 Sum_probs=21.7
Q ss_pred CCCCCC-CHHHHHHHHHHcCCCeEEEe
Q psy1381 31 FTAEFF-DANHWADILASSGAKYVVLT 56 (102)
Q Consensus 31 F~p~~f-Dp~~Wa~l~k~aGakyvvlT 56 (102)
|++++| ||++.++.+++.|.|.++.+
T Consensus 60 ~d~~~FPdp~~mi~~L~~~G~kv~~~i 86 (319)
T cd06591 60 FDPERFPDPKAMVRELHEMNAELMISI 86 (319)
T ss_pred EChhhCCCHHHHHHHHHHCCCEEEEEe
Confidence 356555 89999999999999988865
No 123
>PTZ00413 lipoate synthase; Provisional
Probab=41.16 E-value=32 Score=29.03 Aligned_cols=30 Identities=23% Similarity=0.405 Sum_probs=22.4
Q ss_pred CCCCCCHHHHHHH---HHHcCCCeEEEeeeecC
Q psy1381 32 TAEFFDANHWADI---LASSGAKYVVLTSKHHE 61 (102)
Q Consensus 32 ~p~~fDp~~Wa~l---~k~aGakyvvlTtKHHd 61 (102)
.|...||++-++. ++++|++|+|+|+---|
T Consensus 173 ~p~~lD~eEp~~vA~av~~~Gl~~~VVTSv~RD 205 (398)
T PTZ00413 173 KPPPLDPNEPEKVAKAVAEMGVDYIVMTMVDRD 205 (398)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCEEEEEEEcCC
Confidence 3677788766554 56689999999997653
No 124
>PRK13358 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=40.63 E-value=1e+02 Score=23.64 Aligned_cols=60 Identities=10% Similarity=0.050 Sum_probs=38.0
Q ss_pred HHHHHHHHHcCCCeEEEeeeecC---------Cccc----CCCCCCCCc--ccccCCCCCchHHHHHHHHhhcCCC
Q psy1381 39 NHWADILASSGAKYVVLTSKHHE---------GYTL----WPSKYAFSW--NSMDIGPKRDLVDYTFGNWFTGGSP 99 (102)
Q Consensus 39 ~~Wa~l~k~aGakyvvlTtKHHd---------GF~l----W~S~~~~~~--~s~~~~p~rDiv~el~~a~~~~Gl~ 99 (102)
+++.+.+++..-+.+|+.+-||. +|++ |++... ++ .........+|..+|.+.+.+.|++
T Consensus 32 ~~~~~~l~~~~Pd~iViis~~h~~~~~~~~~~~~~i~~~~~~~p~g-d~g~~~~~~~g~~~LA~~l~~~~~~~~~~ 106 (269)
T PRK13358 32 REIGRRLRELRPDVLVVIGSDHLFNFNTGCQPPFLVGTGDSDTPYG-DMDIPRELVPGHRAFAQAIALHRAADGFD 106 (269)
T ss_pred HHHHHHHHHcCCCEEEEEeCchhhhcccccCCCeEEEecCCCCCcc-ccCCCcccCCCCHHHHHHHHHHHHHcCCC
Confidence 45666667778899999999887 5664 221111 11 0111222457799999999888886
No 125
>cd00615 Orn_deC_like Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.
Probab=39.94 E-value=94 Score=23.62 Aligned_cols=46 Identities=17% Similarity=0.161 Sum_probs=30.7
Q ss_pred CCCHHHHHHHHHH-cCCCeEEEeeeecCCcccCCCCCCCCcccccCCCCCchHHHHHHHHhhcCCC
Q psy1381 35 FFDANHWADILAS-SGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVDYTFGNWFTGGSP 99 (102)
Q Consensus 35 ~fDp~~Wa~l~k~-aGakyvvlTtKHHdGF~lW~S~~~~~~~s~~~~p~rDiv~el~~a~~~~Gl~ 99 (102)
..|+++..+++++ -..+-+++|.-+..|.+ -| ++++++.|+++|++
T Consensus 139 ~i~~~~l~~~l~~~~~~k~v~l~~p~~~G~~------------------~d-l~~I~~~~~~~g~~ 185 (294)
T cd00615 139 GIPPETFKKALIEHPDAKAAVITNPTYYGIC------------------YN-LRKIVEEAHHRGLP 185 (294)
T ss_pred CCCHHHHHHHHHhCCCceEEEEECCCCCCEe------------------cC-HHHHHHHHHhcCCe
Confidence 5789999988876 35666776532222221 13 68999999999875
No 126
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=39.87 E-value=44 Score=27.04 Aligned_cols=54 Identities=17% Similarity=0.042 Sum_probs=37.0
Q ss_pred HHHHHHcCCCeEEEeeeecCCcccCCCCCCCCcccccCCC----CCchHHHHHHHHhhc
Q psy1381 42 ADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGP----KRDLVDYTFGNWFTG 96 (102)
Q Consensus 42 a~l~k~aGakyvvlTtKHHdGF~lW~S~~~~~~~s~~~~p----~rDiv~el~~a~~~~ 96 (102)
|+.|++||+-.|=|-+-|.--..-|=|..+ |-.+-.+|. +.-++.|++++.|+.
T Consensus 165 A~rA~~AGfDGVEIh~ahGyLl~qFLSp~~-N~RtDeYGGslENR~Rf~~Eiv~aVr~~ 222 (362)
T PRK10605 165 IANAREAGFDLVELHSAHGYLLHQFLSPSS-NQRTDQYGGSVENRARLVLEVVDAGIAE 222 (362)
T ss_pred HHHHHHcCCCEEEEcccccchHHHhcCCcC-CCCCCcCCCcHHHHHHHHHHHHHHHHHH
Confidence 457788999999999999655566666666 222333443 346777888887764
No 127
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=39.82 E-value=35 Score=27.15 Aligned_cols=43 Identities=14% Similarity=0.131 Sum_probs=30.4
Q ss_pred HHHHHHHHcCCCeEEEeeeecCCcccCCCCCCCCcccccCCCCCchHHHHHHHHhhcCCC
Q psy1381 40 HWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVDYTFGNWFTGGSP 99 (102)
Q Consensus 40 ~Wa~l~k~aGakyvvlTtKHHdGF~lW~S~~~~~~~s~~~~p~rDiv~el~~a~~~~Gl~ 99 (102)
+++..+-++|+.-|++ || |..+..- ...+.+++++-|+.+|++
T Consensus 88 e~i~~Ai~~GftSVM~-----Dg-----S~l~~ee-------Ni~~T~~vve~Ah~~gv~ 130 (283)
T PRK07998 88 EDVKQAVRAGFTSVMI-----DG-----AALPFEE-------NIAFTKEAVDFAKSYGVP 130 (283)
T ss_pred HHHHHHHHcCCCEEEE-----eC-----CCCCHHH-------HHHHHHHHHHHHHHcCCE
Confidence 5666677888888888 44 2222111 357899999999999986
No 128
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=39.36 E-value=56 Score=23.96 Aligned_cols=29 Identities=17% Similarity=0.188 Sum_probs=26.4
Q ss_pred CCCHHHHHHHHHHcCCCeEEEeeeecCCc
Q psy1381 35 FFDANHWADILASSGAKYVVLTSKHHEGY 63 (102)
Q Consensus 35 ~fDp~~Wa~l~k~aGakyvvlTtKHHdGF 63 (102)
..+|.++++.+.+.|+..++++..+.+|-
T Consensus 144 ~~~~~~~~~~~~~~g~~~ii~~~~~~~g~ 172 (230)
T TIGR00007 144 EVSLEELAKRLEELGLEGIIYTDISRDGT 172 (230)
T ss_pred CCCHHHHHHHHHhCCCCEEEEEeecCCCC
Confidence 48999999999999999999999988875
No 129
>cd07950 Gallate_Doxase_N The N-terminal domain of the Class III extradiol dioxygenase, Gallate Dioxygenase, which catalyzes the oxidization and subsequent ring-opening of gallate. Gallate Dioxygenase catalyzes the oxidization and subsequent ring-opening of gallate, an intermediate in the degradation of the aromatic compound, syringate. The reaction product of gallate dioxygenase is 4-oxalomesaconate. The amino acid sequence of the N-terminal and C-terminal regions of gallate dioxygenase exhibits homology with the sequence of PCA 4,5-dioxygenase B (catalytic) and A subunits, respectively. The enzyme is estimated to be a homodimer according to the Escherichia coli enzyme. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. In this subfamily, the subunits A and B are fused to make a single polypeptide chain. The dimer interface for this subfamily may resemble the tetramer interface of classical LigAB en
Probab=38.77 E-value=89 Score=24.46 Aligned_cols=62 Identities=10% Similarity=-0.020 Sum_probs=40.2
Q ss_pred HHHHHHHHHcCCCeEEEeeeec-C--------CcccCCCCCC--CCc-----ccccCCCCCchHHHHHHHHhhcCCCC
Q psy1381 39 NHWADILASSGAKYVVLTSKHH-E--------GYTLWPSKYA--FSW-----NSMDIGPKRDLVDYTFGNWFTGGSPG 100 (102)
Q Consensus 39 ~~Wa~l~k~aGakyvvlTtKHH-d--------GF~lW~S~~~--~~~-----~s~~~~p~rDiv~el~~a~~~~Gl~~ 100 (102)
++..+.+++++..=+|+++.|| . .||+...... .++ .........+|..++++.+.+.|++-
T Consensus 38 ~~~~~~i~~~~PD~iVvi~~dH~~~f~~d~~p~f~Ig~~~~~~~~d~~~~~~~~~~~~g~~~LA~~i~~~~~~~g~~~ 115 (277)
T cd07950 38 EPVKQWLAEQKPDVLFMVYNDHVTSFFFDHYSAFALGVGDSYEVADEGGGPRDLPPIRGHAALAQHIAESLVADEFDL 115 (277)
T ss_pred HHHHHHHHHhCCCEEEEEcCcHHHHhccccCCcEEEEecccccccccccCCccCCCCCCCHHHHHHHHHHHHhcCCCe
Confidence 5677778888888899998565 3 3454433332 010 01122226799999999999999864
No 130
>PRK13364 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=38.43 E-value=77 Score=24.99 Aligned_cols=62 Identities=8% Similarity=-0.022 Sum_probs=43.4
Q ss_pred HHHHHHHHHcCCCeEEEee-eecCC--------cccCCCCCC-CC---cccc---cCCCCCchHHHHHHHHhhcCCCC
Q psy1381 39 NHWADILASSGAKYVVLTS-KHHEG--------YTLWPSKYA-FS---WNSM---DIGPKRDLVDYTFGNWFTGGSPG 100 (102)
Q Consensus 39 ~~Wa~l~k~aGakyvvlTt-KHHdG--------F~lW~S~~~-~~---~~s~---~~~p~rDiv~el~~a~~~~Gl~~ 100 (102)
++..+.++++.-.-+|+.+ -|..+ ||+...... .+ |... ......++..+|++.+++.|++-
T Consensus 38 ~~~~~~v~~~~PDvvVvis~dH~~~ff~d~~p~f~i~~~~~~~g~~~~~g~~~~~~~~~~~~lA~~i~~~l~~~gid~ 115 (278)
T PRK13364 38 PPVREWLEKVKPDVAVVFYNDHGLNFFLDKMPTFAVGAAPEYSNADEGWGIPTLAPFKGDTELSWHIIESLVEEEFDI 115 (278)
T ss_pred HHHHHHHHHhCCCEEEEECCchHhhhccccCCeEEEeeCceecCChhhcCCCCCCCCCCCHHHHHHHHHHHHHcCCCe
Confidence 5677778888889999999 88665 556655552 12 2211 12226799999999999999974
No 131
>PF13611 Peptidase_S76: Serine peptidase of plant viral polyprotein, P1
Probab=38.14 E-value=23 Score=25.20 Aligned_cols=18 Identities=28% Similarity=0.194 Sum_probs=16.6
Q ss_pred CCchHHHHHHHHhhcCCC
Q psy1381 82 KRDLVDYTFGNWFTGGSP 99 (102)
Q Consensus 82 ~rDiv~el~~a~~~~Gl~ 99 (102)
=-||++++.+.|-+.|+|
T Consensus 35 i~dL~~~~~~ic~ergiP 52 (121)
T PF13611_consen 35 IDDLVREVTEICCERGIP 52 (121)
T ss_pred HHHHHHHHHHHHHHcCCC
Confidence 369999999999999998
No 132
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=37.56 E-value=43 Score=26.50 Aligned_cols=30 Identities=23% Similarity=0.304 Sum_probs=24.3
Q ss_pred cCCCCCC-CHHHHHHHHHHcCCCeEEEeeee
Q psy1381 30 DFTAEFF-DANHWADILASSGAKYVVLTSKH 59 (102)
Q Consensus 30 ~F~p~~f-Dp~~Wa~l~k~aGakyvvlTtKH 59 (102)
.|++++| ||++.++.+++.|.|.++.+.-|
T Consensus 57 ~~d~~~fPdp~~m~~~l~~~g~~~~~~~~P~ 87 (339)
T cd06604 57 TWDKERFPDPKELIKELHEQGFKVVTIIDPG 87 (339)
T ss_pred eeccccCCCHHHHHHHHHHCCCEEEEEEeCc
Confidence 4677777 79999999999999998766433
No 133
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=37.52 E-value=58 Score=26.09 Aligned_cols=54 Identities=7% Similarity=-0.061 Sum_probs=36.8
Q ss_pred HHHHHHcCCCeEEEeeeecCCcccCCCCCCCCcccccCCC----CCchHHHHHHHHhhc
Q psy1381 42 ADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGP----KRDLVDYTFGNWFTG 96 (102)
Q Consensus 42 a~l~k~aGakyvvlTtKHHdGF~lW~S~~~~~~~s~~~~p----~rDiv~el~~a~~~~ 96 (102)
|+.+++||+..|=|-+-|.-=++-|=|..++. .+-..|. +..++.|++++.|+.
T Consensus 158 A~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~-R~D~yGGslenR~rf~~eii~air~~ 215 (338)
T cd02933 158 ARNAIEAGFDGVEIHGANGYLIDQFLRDGSNK-RTDEYGGSIENRARFLLEVVDAVAEA 215 (338)
T ss_pred HHHHHHcCCCEEEEccccchhHHHhcCCccCC-CCCcCCCcHHHhhhHHHHHHHHHHHH
Confidence 45677899999999888855555566665522 1223333 458888999999875
No 134
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=37.46 E-value=52 Score=26.84 Aligned_cols=54 Identities=9% Similarity=-0.100 Sum_probs=38.1
Q ss_pred HHHHHHcCCCeEEEeeeecCCcccCCCCCCCCcccccCCC----CCchHHHHHHHHhhc
Q psy1381 42 ADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGP----KRDLVDYTFGNWFTG 96 (102)
Q Consensus 42 a~l~k~aGakyvvlTtKHHdGF~lW~S~~~~~~~s~~~~p----~rDiv~el~~a~~~~ 96 (102)
|+.+++||+..|=|-+-|.--++-|=|..++. .+-.+|. +..++.|++++.|+.
T Consensus 150 A~~a~~aGfDgVeih~ahGyLl~qFLSp~~N~-RtDeYGGslenR~Rf~~eii~air~~ 207 (361)
T cd04747 150 AADARRLGFDGIELHGAHGYLIDQFFWAGTNR-RADGYGGSLAARSRFAAEVVKAIRAA 207 (361)
T ss_pred HHHHHHcCCCEEEEecccchHHHHhcCCCCCC-CCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 55778899999999998866666666666522 1223443 458888888888885
No 135
>PF13483 Lactamase_B_3: Beta-lactamase superfamily domain; PDB: 1VJN_B 3KL7_A.
Probab=37.42 E-value=45 Score=23.03 Aligned_cols=24 Identities=13% Similarity=0.062 Sum_probs=18.7
Q ss_pred CCCCCHHHHHHHHHHcCCCeEEEe
Q psy1381 33 AEFFDANHWADILASSGAKYVVLT 56 (102)
Q Consensus 33 p~~fDp~~Wa~l~k~aGakyvvlT 56 (102)
+-..++++.+++++..++|+||.+
T Consensus 139 ~~~~~~~~a~~~~~~l~pk~viP~ 162 (163)
T PF13483_consen 139 PFTMGPEEAAELAERLKPKLVIPM 162 (163)
T ss_dssp TTS--HHHHHHHHHHCT-SEEEEE
T ss_pred CcccCHHHHHHHHHHcCCCEEEeC
Confidence 347899999999999999999976
No 136
>TIGR02298 HpaD_Fe 3,4-dihydroxyphenylacetate 2,3-dioxygenase. This enzyme catalyzes the ring-opening step in the degradation of 4-hydroxyphenylacetate.
Probab=36.54 E-value=1.2e+02 Score=23.80 Aligned_cols=62 Identities=11% Similarity=0.020 Sum_probs=40.0
Q ss_pred HHHHHHHHHcCCCeEEEeeeecCC---cccCCCCCC-CCcc---------ccc--CCCCCchHHHHHHHHhhcCCCC
Q psy1381 39 NHWADILASSGAKYVVLTSKHHEG---YTLWPSKYA-FSWN---------SMD--IGPKRDLVDYTFGNWFTGGSPG 100 (102)
Q Consensus 39 ~~Wa~l~k~aGakyvvlTtKHHdG---F~lW~S~~~-~~~~---------s~~--~~p~rDiv~el~~a~~~~Gl~~ 100 (102)
+++.+.+++...+-+|+++-||.- +.+-.++.- -.|+ .+. .....+|..++++.+++.|++-
T Consensus 37 ~~l~~~l~~~~Pd~IVViS~H~~~~~~~~i~~~~~~~g~~~~~g~p~~l~~~~y~~~gd~eLA~~i~~~~~~~gi~~ 113 (282)
T TIGR02298 37 KEISRRAKEMGVDTIVVFDTHWLVNSGYHINCNDQFSGSYTSHELPHFIQDLRYDYPGNPALGQLIADEAQEHGVKT 113 (282)
T ss_pred HHHHHHHHHcCCCEEEEECCCCCcCCCeEEecCCCCcceecCCCCChhhhCceeeCCCCHHHHHHHHHHHHHCCCce
Confidence 456667777789999999999853 332222221 0111 111 2225789999999999999973
No 137
>cd07365 MhpB_like Subunit B of the Class III Extradiol ring-cleavage dioxygenase, 2,3-dihydroxyphenylpropionate 1,2-dioxygenase (MhpB), which catalyzes the oxidization and subsequent ring-opening of 2,3-dihydroxyphenylpropionate. 2,3-dihydroxyphenylpropionate 1,2-dioxygenase (MhpB) catalyzes the oxidization and subsequent ring-opening of 2,3-dihydroxyphenylpropionate, yielding the product 2-hydroxy-6-oxo-nona-2,4-diene 1,9-dicarboxylate. It is an essential enzyme in the beta-phenylpropionic degradation pathway, in which beta-phenylpropionic is first hydrolyzed to produce 2,3-dihydroxyphenylpropionate. The enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like class III enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the ca
Probab=36.46 E-value=1.1e+02 Score=24.44 Aligned_cols=61 Identities=16% Similarity=0.171 Sum_probs=39.6
Q ss_pred HHHHHHHHHcCCCeEEEeeeecCC-ccc--------CCCCCC-CCcccc--cCCCCCchHHHHHHHHhhcCCC
Q psy1381 39 NHWADILASSGAKYVVLTSKHHEG-YTL--------WPSKYA-FSWNSM--DIGPKRDLVDYTFGNWFTGGSP 99 (102)
Q Consensus 39 ~~Wa~l~k~aGakyvvlTtKHHdG-F~l--------W~S~~~-~~~~s~--~~~p~rDiv~el~~a~~~~Gl~ 99 (102)
+++.+.+++..-.-+|+.+-||-+ |-. -.+... .+|..- ......++..+|.+.+...|++
T Consensus 32 ~~l~~~l~~~~PD~iVIigphH~~~f~~~~~p~f~i~~a~~~~gd~~~p~g~~~~d~eLA~~L~~~~~~~g~d 104 (310)
T cd07365 32 AAARAFVAAFDPELVVLFAPDHYNGFFYDLMPPFCIGTAATAVGDYGTLAGPLNVPRDLAEDLARHVLDSGID 104 (310)
T ss_pred HHHHHHHHHcCCCEEEEEcCCcccccccccCCceEeeccCccccccccCCCCCCCCHHHHHHHHHhhhhcCCC
Confidence 566777788888999999999987 322 333221 122111 0111468899999999888885
No 138
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=35.79 E-value=71 Score=23.60 Aligned_cols=29 Identities=21% Similarity=0.216 Sum_probs=24.7
Q ss_pred CCCHHHHHHHHHHcCCCeEEEeeeecCCc
Q psy1381 35 FFDANHWADILASSGAKYVVLTSKHHEGY 63 (102)
Q Consensus 35 ~fDp~~Wa~l~k~aGakyvvlTtKHHdGF 63 (102)
..||.++++.+.++|+..+++|.-..+|-
T Consensus 148 ~~~~~~~~~~~~~~G~~~i~~~~~~~~g~ 176 (241)
T PRK13585 148 GYTPVEAAKRFEELGAGSILFTNVDVEGL 176 (241)
T ss_pred CCCHHHHHHHHHHcCCCEEEEEeecCCCC
Confidence 56999999999999999999988665543
No 139
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=35.65 E-value=49 Score=26.45 Aligned_cols=54 Identities=13% Similarity=0.047 Sum_probs=33.2
Q ss_pred HHHHHHcCCCeEEEeeeecCCcccCCCCCCCCcccccCCC----CCchHHHHHHHHhhc
Q psy1381 42 ADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGP----KRDLVDYTFGNWFTG 96 (102)
Q Consensus 42 a~l~k~aGakyvvlTtKHHdGF~lW~S~~~~~~~s~~~~p----~rDiv~el~~a~~~~ 96 (102)
|+++++||+..|=|-.-|--=++-|-|..++. .+-..|. +.+++.|++++.|+.
T Consensus 147 A~ra~~aGfDgVeih~ahGyLl~qFlsp~~N~-RtD~yGGslenR~r~~~eiv~~ir~~ 204 (343)
T cd04734 147 ARRCQAGGLDGVELQAAHGHLIDQFLSPLTNR-RTDEYGGSLENRMRFLLEVLAAVRAA 204 (343)
T ss_pred HHHHHHcCCCEEEEccccchHHHHhhCCCcCC-CCCcCCCCHHHHhHHHHHHHHHHHHH
Confidence 34567799999999877732223344444311 1122333 348999999999986
No 140
>KOG3111|consensus
Probab=35.28 E-value=42 Score=26.21 Aligned_cols=19 Identities=26% Similarity=0.690 Sum_probs=16.7
Q ss_pred CHHHHHHHHHHcCCCeEEE
Q psy1381 37 DANHWADILASSGAKYVVL 55 (102)
Q Consensus 37 Dp~~Wa~l~k~aGakyvvl 55 (102)
+|++|++-+.+|||.-+.|
T Consensus 75 ~Peq~V~~~a~agas~~tf 93 (224)
T KOG3111|consen 75 NPEQWVDQMAKAGASLFTF 93 (224)
T ss_pred CHHHHHHHHHhcCcceEEE
Confidence 6999999999999986655
No 141
>cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY). This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab
Probab=35.27 E-value=88 Score=20.90 Aligned_cols=21 Identities=10% Similarity=0.202 Sum_probs=17.7
Q ss_pred HHHHHHHHHcCCCeEEEeeee
Q psy1381 39 NHWADILASSGAKYVVLTSKH 59 (102)
Q Consensus 39 ~~Wa~l~k~aGakyvvlTtKH 59 (102)
.+=++.++++||+.+|+.-.+
T Consensus 58 ~~K~~~A~~aGA~~vIv~n~~ 78 (122)
T cd02130 58 GDKSALAGAAGAAAAIIYNNV 78 (122)
T ss_pred HHHHHHHHHCCCcEEEEEECC
Confidence 455888999999999998766
No 142
>cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10. This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=35.22 E-value=92 Score=21.66 Aligned_cols=21 Identities=19% Similarity=0.317 Sum_probs=17.5
Q ss_pred HHHHHHHHHcCCCeEEEeeee
Q psy1381 39 NHWADILASSGAKYVVLTSKH 59 (102)
Q Consensus 39 ~~Wa~l~k~aGakyvvlTtKH 59 (102)
.+=+..++++||+.+|+....
T Consensus 73 ~~K~~nA~~aGA~avIv~n~~ 93 (139)
T cd02132 73 TEKAKIAEAGGASALLIINDQ 93 (139)
T ss_pred HHHHHHHHHcCCcEEEEEECC
Confidence 455889999999999998644
No 143
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=35.20 E-value=89 Score=21.77 Aligned_cols=44 Identities=18% Similarity=0.056 Sum_probs=30.8
Q ss_pred CCCHHHHHHHHHHcCCCeEEEeeeecCCcccCCCCCCCCcccccCCCCCchHHHHHHHHhhcCC
Q psy1381 35 FFDANHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVDYTFGNWFTGGS 98 (102)
Q Consensus 35 ~fDp~~Wa~l~k~aGakyvvlTtKHHdGF~lW~S~~~~~~~s~~~~p~rDiv~el~~a~~~~Gl 98 (102)
.=.|++-++.+++.++..+++.+-= +.....+++++++++++|+
T Consensus 39 ~~s~e~~v~aa~e~~adii~iSsl~--------------------~~~~~~~~~~~~~L~~~g~ 82 (132)
T TIGR00640 39 FQTPEEIARQAVEADVHVVGVSSLA--------------------GGHLTLVPALRKELDKLGR 82 (132)
T ss_pred CCCHHHHHHHHHHcCCCEEEEcCch--------------------hhhHHHHHHHHHHHHhcCC
Confidence 4468999999999999999985321 1124556666666666665
No 144
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=35.10 E-value=43 Score=25.25 Aligned_cols=50 Identities=10% Similarity=0.076 Sum_probs=29.8
Q ss_pred HHHHHHHHHcCCCeEEEeeeecCCcccCCCCCC-CCcccccCCCCCchHHHHHHHHhhcCC
Q psy1381 39 NHWADILASSGAKYVVLTSKHHEGYTLWPSKYA-FSWNSMDIGPKRDLVDYTFGNWFTGGS 98 (102)
Q Consensus 39 ~~Wa~l~k~aGakyvvlTtKHHdGF~lW~S~~~-~~~~s~~~~p~rDiv~el~~a~~~~Gl 98 (102)
+..++++++.|++++++- |...++.... ..|.. -.+-++++++.++++|+
T Consensus 97 ~~~i~~a~~lG~~~v~~~-----~~~~~~~~~~~~~~~~-----~~~~l~~l~~~A~~~Gv 147 (279)
T TIGR00542 97 EKAIQLARDLGIRTIQLA-----GYDVYYEEHDEETRRR-----FREGLKEAVELAARAQV 147 (279)
T ss_pred HHHHHHHHHhCCCEEEec-----CcccccCcCCHHHHHH-----HHHHHHHHHHHHHHcCC
Confidence 578889999999998762 2111111111 00000 12556788889999887
No 145
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=34.87 E-value=53 Score=25.49 Aligned_cols=77 Identities=16% Similarity=0.034 Sum_probs=45.9
Q ss_pred ChHHHHHHHHhCCCCCChHHhhccCCCCCCCHHHHHHHHHHcCCCeEEEeeeecCCcccCCCCCCCCcccccCCCCCchH
Q psy1381 7 NSTVTKFMERNYKPGFTYQDFAKDFTAEFFDANHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLV 86 (102)
Q Consensus 7 ~~~y~~~~~~~~~~~~~Y~~~a~~F~p~~fDp~~Wa~l~k~aGakyvvlTtKHHdGF~lW~S~~~~~~~s~~~~p~rDiv 86 (102)
+++..+-..+.|.- .++...-+.+...-++.+.++++.|+.+|+++. |..|-+ + + + ....+++
T Consensus 78 ~~~v~eaaL~~~~G----~~iINsIs~~~~~~~~~~~l~~~~g~~vv~m~~-~~~g~P----~-t-----~--~~~~~~l 140 (261)
T PRK07535 78 NPAAIEAGLKVAKG----PPLINSVSAEGEKLEVVLPLVKKYNAPVVALTM-DDTGIP----K-D-----A--EDRLAVA 140 (261)
T ss_pred CHHHHHHHHHhCCC----CCEEEeCCCCCccCHHHHHHHHHhCCCEEEEec-CCCCCC----C-C-----H--HHHHHHH
Confidence 44445555554310 123333344443234789999999999988874 434421 0 1 1 0135888
Q ss_pred HHHHHHHhhcCCCC
Q psy1381 87 DYTFGNWFTGGSPG 100 (102)
Q Consensus 87 ~el~~a~~~~Gl~~ 100 (102)
.++++.|.++|++.
T Consensus 141 ~~~v~~a~~~GI~~ 154 (261)
T PRK07535 141 KELVEKADEYGIPP 154 (261)
T ss_pred HHHHHHHHHcCCCH
Confidence 99999999999963
No 146
>KOG1643|consensus
Probab=34.75 E-value=46 Score=26.23 Aligned_cols=48 Identities=19% Similarity=0.309 Sum_probs=28.8
Q ss_pred HHHHHHHHhCCCCCChHHh-hccCCCCCCCHHHHHHHHHHcCCCeEEEe
Q psy1381 9 TVTKFMERNYKPGFTYQDF-AKDFTAEFFDANHWADILASSGAKYVVLT 56 (102)
Q Consensus 9 ~y~~~~~~~~~~~~~Y~~~-a~~F~p~~fDp~~Wa~l~k~aGakyvvlT 56 (102)
.|..|.++...+...-... +-.+..-.|.-+.=++.++++|++||||-
T Consensus 45 ~Yl~~ak~~l~~~i~v~aQn~~~~k~GafTGEiS~~mlkd~G~~wVIlG 93 (247)
T KOG1643|consen 45 PYLDYAKSKLKPDIGVAAQNCYKVKSGAFTGEISAEMLKDLGAEWVILG 93 (247)
T ss_pred hHHHHHHHhCCccceeecceeeeccCccccCccCHHHHHhCCCCEEEec
Confidence 4555555555433322211 22344445666667889999999999984
No 147
>PRK09505 malS alpha-amylase; Reviewed
Probab=34.50 E-value=1.1e+02 Score=27.28 Aligned_cols=62 Identities=16% Similarity=0.285 Sum_probs=37.3
Q ss_pred HHHHHHHHHHcCCCeEEEee--eecCCccc------CC-CCC-C---CCcccccCCC-CCchHHHHHHHHhhcCCC
Q psy1381 38 ANHWADILASSGAKYVVLTS--KHHEGYTL------WP-SKY-A---FSWNSMDIGP-KRDLVDYTFGNWFTGGSP 99 (102)
Q Consensus 38 p~~Wa~l~k~aGakyvvlTt--KHHdGF~l------W~-S~~-~---~~~~s~~~~p-~rDiv~el~~a~~~~Gl~ 99 (102)
-.+.++-++++|+..|.|+. ++.+|..- ++ ..+ . .+|..++... ..+-+++|+++|+++||.
T Consensus 232 i~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~ 307 (683)
T PRK09505 232 LTEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIR 307 (683)
T ss_pred HHHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCE
Confidence 46778899999999998864 34333210 11 011 1 1222222211 356799999999999984
No 148
>PRK00685 metal-dependent hydrolase; Provisional
Probab=34.49 E-value=51 Score=23.73 Aligned_cols=27 Identities=15% Similarity=0.089 Sum_probs=22.6
Q ss_pred CCCHHHHHHHHHHcCCCeEEEeeeecCCc
Q psy1381 35 FFDANHWADILASSGAKYVVLTSKHHEGY 63 (102)
Q Consensus 35 ~fDp~~Wa~l~k~aGakyvvlTtKHHdGF 63 (102)
..+|++-+++++++++|.+|+| |.+.|
T Consensus 170 h~~~~ea~~~~~~~~~k~~v~~--H~~~~ 196 (228)
T PRK00685 170 TMGPEDAALAVELIKPKIVIPM--HYNTF 196 (228)
T ss_pred ccCHHHHHHHHHhhCCCEEEEe--ccCCC
Confidence 5899999999999999988776 66544
No 149
>cd01093 CRIB_PAK_like PAK (p21 activated kinase) Binding Domain (PBD), binds Cdc42p- and/or Rho-like small GTPases; also known as the Cdc42/Rac interactive binding (CRIB) motif; has been shown to inhibit transcriptional activation and cell transformation mediated by the Ras-Rac pathway. This subgroup of CRIB/PBD-domains is found N-terminal of Serine/Threonine kinase domains in PAK and PAK-like proteins.
Probab=34.45 E-value=25 Score=20.44 Aligned_cols=14 Identities=36% Similarity=0.762 Sum_probs=12.3
Q ss_pred HHHHHHHHHHcCCC
Q psy1381 38 ANHWADILASSGAK 51 (102)
Q Consensus 38 p~~Wa~l~k~aGak 51 (102)
|.+|.++++.+|..
T Consensus 28 P~eW~~ll~~sgis 41 (46)
T cd01093 28 PEEWQRLLKSSGIT 41 (46)
T ss_pred CHHHHHHHHHcCCC
Confidence 69999999999864
No 150
>cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2. A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola
Probab=34.27 E-value=50 Score=22.53 Aligned_cols=30 Identities=10% Similarity=-0.064 Sum_probs=23.2
Q ss_pred HHHHHHHHHcCCCeEEEeeeecCCcccCCC
Q psy1381 39 NHWADILASSGAKYVVLTSKHHEGYTLWPS 68 (102)
Q Consensus 39 ~~Wa~l~k~aGakyvvlTtKHHdGF~lW~S 68 (102)
.+=++.+.++||+-+|+...+...+..+++
T Consensus 60 ~~k~~~A~~~GA~avi~~~~~~g~~~~~~~ 89 (127)
T cd04819 60 KEKYAKAVAAGAAAFVVVNTVPGVLPATGD 89 (127)
T ss_pred HHHHHHHHHCCCEEEEEEeCCCCcCccccc
Confidence 455888999999999999777666665544
No 151
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=34.10 E-value=1e+02 Score=23.18 Aligned_cols=30 Identities=13% Similarity=0.224 Sum_probs=27.3
Q ss_pred CCCCCCHHHHHHHHHHcCCCeEEEeeeecCC
Q psy1381 32 TAEFFDANHWADILASSGAKYVVLTSKHHEG 62 (102)
Q Consensus 32 ~p~~fDp~~Wa~l~k~aGakyvvlTtKHHdG 62 (102)
.++..+|.+|++.+.+. ++.+++|-=..+|
T Consensus 142 ~~~~~~~~~~~~~~~~~-~~~li~~di~~~G 171 (233)
T cd04723 142 PTDFIGPEELLRRLAKW-PEELIVLDIDRVG 171 (233)
T ss_pred ccCcCCHHHHHHHHHHh-CCeEEEEEcCccc
Confidence 45788999999999999 9999999998887
No 152
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=33.86 E-value=35 Score=26.40 Aligned_cols=59 Identities=15% Similarity=0.074 Sum_probs=33.9
Q ss_pred HHHHHHHcCCCeEEEeeeecCCcccCC-------CCCCCC---cccc--cCCCCCchHHHHHHHHhhcCCC
Q psy1381 41 WADILASSGAKYVVLTSKHHEGYTLWP-------SKYAFS---WNSM--DIGPKRDLVDYTFGNWFTGGSP 99 (102)
Q Consensus 41 Wa~l~k~aGakyvvlTtKHHdGF~lW~-------S~~~~~---~~s~--~~~p~rDiv~el~~a~~~~Gl~ 99 (102)
.+++|+++||.-|=|-+..-+.+..=. ++.+.. +... ...-..|-..+|.+.|++.||.
T Consensus 1 lI~~A~~aGaDaVKFQ~~~~~~l~~~~~~~~~y~~~~~~~~~~~~~~~~~~el~~e~~~~L~~~~~~~gi~ 71 (241)
T PF03102_consen 1 LIDAAAEAGADAVKFQTFTAEELYSPNAYKAPYQSPNGWGDESYYELFKKLELSEEQHKELFEYCKELGID 71 (241)
T ss_dssp HHHHHHHHT-SEEEEEEB-HHHHCSGGGGG-------TT-SSTHHHHHHHHSS-HHHHHHHHHHHHHTT-E
T ss_pred CHHHHHHhCCCEEEEEEEchhhhcChhhhcccccccCCCCCCcHHHHHHHhcCCHHHHHHHHHHHHHcCCE
Confidence 378999999999999888877544221 111100 0000 0112467888999999999984
No 153
>COG1234 ElaC Metal-dependent hydrolases of the beta-lactamase superfamily III [General function prediction only]
Probab=33.81 E-value=50 Score=25.90 Aligned_cols=22 Identities=32% Similarity=0.383 Sum_probs=20.3
Q ss_pred CCCHHHHHHHHHHcCCCeEEEe
Q psy1381 35 FFDANHWADILASSGAKYVVLT 56 (102)
Q Consensus 35 ~fDp~~Wa~l~k~aGakyvvlT 56 (102)
.-.++|=+++|++||+|-+|||
T Consensus 234 HsT~~eAa~iA~~A~vk~LiLt 255 (292)
T COG1234 234 HSTAEEAAEIAKEAGVKKLILT 255 (292)
T ss_pred CCCHHHHHHHHHHcCCCeEEEE
Confidence 5678999999999999999998
No 154
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=33.80 E-value=48 Score=26.22 Aligned_cols=54 Identities=13% Similarity=0.099 Sum_probs=36.1
Q ss_pred HHHHHHcCCCeEEEeeeecCCcccCCCCCCCCcccccCCC----CCchHHHHHHHHhhc
Q psy1381 42 ADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGP----KRDLVDYTFGNWFTG 96 (102)
Q Consensus 42 a~l~k~aGakyvvlTtKHHdGF~lW~S~~~~~~~s~~~~p----~rDiv~el~~a~~~~ 96 (102)
|+.+++||+..|=|-.-|.--..-|-|..++. .+-..|. +.+++.|++++.|+.
T Consensus 155 A~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~-R~D~yGGslenR~rf~~EiI~aIR~a 212 (338)
T cd04733 155 ARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNK-RTDEYGGSLENRARLLLEIYDAIRAA 212 (338)
T ss_pred HHHHHHcCCCEEEEchhhhhHHHHhcCCcCCC-CCccCCCCHHHHHHHHHHHHHHHHHH
Confidence 44667899999999888855555667766522 1223333 457888888888865
No 155
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=33.80 E-value=1.8e+02 Score=21.54 Aligned_cols=55 Identities=9% Similarity=0.092 Sum_probs=35.2
Q ss_pred CCCCCHHHHHHHHHHcCCCeEEEeeeecCCcccCCCCCCCCcccccCCCCCchHHHHHHHHhhcCCC
Q psy1381 33 AEFFDANHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVDYTFGNWFTGGSP 99 (102)
Q Consensus 33 p~~fDp~~Wa~l~k~aGakyvvlTtKHHdGF~lW~S~~~~~~~s~~~~p~rDiv~el~~a~~~~Gl~ 99 (102)
|..++.++-++.++++|..++=+.... .+.... .... ...-+.++.+.++++||.
T Consensus 13 ~~~~~~~e~~~~~~~~G~~~iEl~~~~------~~~~~~----~~~~--~~~~~~~l~~~l~~~Gl~ 67 (284)
T PRK13210 13 PKHLSWEERLVFAKELGFDFVEMSVDE------SDERLA----RLDW--SKEERLSLVKAIYETGVR 67 (284)
T ss_pred CCCCCHHHHHHHHHHcCCCeEEEecCC------cccccc----cccC--CHHHHHHHHHHHHHcCCC
Confidence 456788999999999999999885221 001000 0000 123377888889999885
No 156
>PRK13365 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=33.52 E-value=1.3e+02 Score=23.59 Aligned_cols=62 Identities=15% Similarity=-0.047 Sum_probs=40.5
Q ss_pred HHHHHHHHHcCCCeEEEeeeec------CC---cccCCCCCC--CCcc-----cccCCCCCchHHHHHHHHhhcCCCC
Q psy1381 39 NHWADILASSGAKYVVLTSKHH------EG---YTLWPSKYA--FSWN-----SMDIGPKRDLVDYTFGNWFTGGSPG 100 (102)
Q Consensus 39 ~~Wa~l~k~aGakyvvlTtKHH------dG---F~lW~S~~~--~~~~-----s~~~~p~rDiv~el~~a~~~~Gl~~ 100 (102)
++..+.+++++..-+|+...|| |. ||+.....- .++. ........+|..++++.+++.|++-
T Consensus 38 ~~i~~~v~~~~PDviVvi~sdH~~~f~~d~~p~f~Ig~~~~~~~~~~g~~~~~~~~~~g~~eLA~~i~~~~~~~g~~~ 115 (279)
T PRK13365 38 EPVAAWLAEQKADVLVFFYNDHCTTFFFDLYPTFALGVGERFPVADEGAGLRPLPPIRGDVQLQAHIAECLVNDEFDL 115 (279)
T ss_pred HHHHHHHHHhCCCEEEEEcCchHHHhccccCCceEEEecccccccccccCCCCCCCCCCCHHHHHHHHHHHHHcCCCe
Confidence 5677788889999999995555 33 454444332 1111 1112336789999999999999874
No 157
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=33.52 E-value=94 Score=26.81 Aligned_cols=59 Identities=15% Similarity=0.108 Sum_probs=35.6
Q ss_pred HHHHHHHHcCCCeEEEeeeecCCc---------ccCCCCCCCCccccc--CC--C-----CCchHHHHHHHHhhcCCC
Q psy1381 40 HWADILASSGAKYVVLTSKHHEGY---------TLWPSKYAFSWNSMD--IG--P-----KRDLVDYTFGNWFTGGSP 99 (102)
Q Consensus 40 ~Wa~l~k~aGakyvvlTtKHHdGF---------~lW~S~~~~~~~s~~--~~--p-----~rDiv~el~~a~~~~Gl~ 99 (102)
+-++-++++|...|-|+--+--.- ..|--... +|.+.. .+ | ..+-+++|+++|+++||.
T Consensus 168 ~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY~~~-~y~~~~~~y~~~p~~~~~~~~efk~lV~~~H~~Gi~ 244 (605)
T TIGR02104 168 TGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGYDPL-NYNVPEGSYSTNPYDPATRIRELKQMIQALHENGIR 244 (605)
T ss_pred hHHHHHHHcCCCEEEeCCcccccccccccCCCCCCCCCCCc-cCCCcChhhhcCCCccchHHHHHHHHHHHHHHCCCE
Confidence 347889999999998876553210 01222222 222221 11 1 136799999999999984
No 158
>PF13592 HTH_33: Winged helix-turn helix
Probab=33.31 E-value=62 Score=19.33 Aligned_cols=26 Identities=12% Similarity=0.111 Sum_probs=21.2
Q ss_pred CCCHHHHHHHHHHcCCCeEEEeeeec
Q psy1381 35 FFDANHWADILASSGAKYVVLTSKHH 60 (102)
Q Consensus 35 ~fDp~~Wa~l~k~aGakyvvlTtKHH 60 (102)
.+.+...-++++++|+.|......|.
T Consensus 21 ~ys~~~v~~lL~r~G~s~~kp~~~~~ 46 (60)
T PF13592_consen 21 KYSPSGVYRLLKRLGFSYQKPRPRPP 46 (60)
T ss_pred EEcHHHHHHHHHHcCCccccCCCCcc
Confidence 45788889999999999988777665
No 159
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=33.23 E-value=1e+02 Score=30.65 Aligned_cols=61 Identities=10% Similarity=-0.050 Sum_probs=36.8
Q ss_pred HHHHHHHHHHcCCCeEEEeeeecC-CcccCCCCCCCCcccccCCC-CCchHHHHHHHHhhcCCC
Q psy1381 38 ANHWADILASSGAKYVVLTSKHHE-GYTLWPSKYAFSWNSMDIGP-KRDLVDYTFGNWFTGGSP 99 (102)
Q Consensus 38 p~~Wa~l~k~aGakyvvlTtKHHd-GF~lW~S~~~~~~~s~~~~p-~rDiv~el~~a~~~~Gl~ 99 (102)
..+.++-+++.|+..+.++--.-. .-..+--.+. +|+.++..- ..+=++.|+++|+++||-
T Consensus 760 ~~~~l~Yl~~LGv~~i~lsPi~~a~~gs~hGYdv~-D~~~idp~lG~~edf~~Lv~~ah~~Gi~ 822 (1693)
T PRK14507 760 AEAILPYLAALGISHVYASPILKARPGSTHGYDIV-DHSQINPEIGGEEGFERFCAALKAHGLG 822 (1693)
T ss_pred HHHHhHHHHHcCCCEEEECCCcCCCCCCCCCCCCC-CCCccCcccCCHHHHHHHHHHHHHCCCE
Confidence 466677789999999998843321 1111111222 233332211 355679999999999983
No 160
>TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated. Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream.
Probab=32.91 E-value=88 Score=26.94 Aligned_cols=51 Identities=20% Similarity=0.135 Sum_probs=36.0
Q ss_pred CCCCHHHHHHHHHHcCC---CeEEEeeeecCCcccCCCCCCCCcccccCCC-CCchHHHHHHHHhhcCCC
Q psy1381 34 EFFDANHWADILASSGA---KYVVLTSKHHEGYTLWPSKYAFSWNSMDIGP-KRDLVDYTFGNWFTGGSP 99 (102)
Q Consensus 34 ~~fDp~~Wa~l~k~aGa---kyvvlTtKHHdGF~lW~S~~~~~~~s~~~~p-~rDiv~el~~a~~~~Gl~ 99 (102)
-.+|+++..+++++-|+ -+++.|.-| |+.--.| ..+-++++.+.|+++|||
T Consensus 165 G~~dl~~le~~I~~~g~~~i~~v~~tlt~---------------N~~GGqpvslenlr~V~~la~~~GIp 219 (467)
T TIGR02617 165 GNFDLEGLERGIEEVGPNNVPYIVATITC---------------NSAGGQPVSLANLKAVYEIAKKYDIP 219 (467)
T ss_pred CCcCHHHHHHHHhhcCCCCceeeeeeEEE---------------ecCCCEEeCHHHHHHHHHHHHHcCCc
Confidence 37899999999998776 344444421 1111111 578899999999999997
No 161
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=32.81 E-value=1.2e+02 Score=22.33 Aligned_cols=29 Identities=28% Similarity=0.349 Sum_probs=24.1
Q ss_pred CCCCHHHHHHHHHHcCCCeEEEeeeecCC
Q psy1381 34 EFFDANHWADILASSGAKYVVLTSKHHEG 62 (102)
Q Consensus 34 ~~fDp~~Wa~l~k~aGakyvvlTtKHHdG 62 (102)
+..++.+-++.+.++|+..++++.-.-+|
T Consensus 151 ~~~~~~~~~~~~~~~G~d~i~i~~i~~~g 179 (232)
T TIGR03572 151 TGRDPVEWAREAEQLGAGEILLNSIDRDG 179 (232)
T ss_pred CCCCHHHHHHHHHHcCCCEEEEeCCCccC
Confidence 46789999999999999999999744443
No 162
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=32.78 E-value=99 Score=26.21 Aligned_cols=51 Identities=14% Similarity=0.161 Sum_probs=38.5
Q ss_pred CCCCHHHHHHHHHHcCCCeEEEeeeecCCcccCCCCCCCCcccccCCCCCchHHHHHHHHhhcCCC
Q psy1381 34 EFFDANHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVDYTFGNWFTGGSP 99 (102)
Q Consensus 34 ~~fDp~~Wa~l~k~aGakyvvlTtKHHdGF~lW~S~~~~~~~s~~~~p~rDiv~el~~a~~~~Gl~ 99 (102)
+.|+|++.++++..-|.++-+- .|. =|||..-+ -.+||.-|...|+++|+-
T Consensus 77 ~~ft~~d~i~~~e~~Gi~~~e~---~~G--r~Fp~sdk----------A~~Iv~~ll~~~~~~gV~ 127 (408)
T COG2081 77 ARFTPEDFIDWVEGLGIALKEE---DLG--RMFPDSDK----------ASPIVDALLKELEALGVT 127 (408)
T ss_pred HhCCHHHHHHHHHhcCCeeEEc---cCc--eecCCccc----------hHHHHHHHHHHHHHcCcE
Confidence 5799999999999999987642 222 34444222 379999999999999973
No 163
>PRK13370 mhpB 3-(2,3-dihydroxyphenyl)propionate dioxygenase; Provisional
Probab=32.67 E-value=1.6e+02 Score=23.53 Aligned_cols=61 Identities=16% Similarity=0.089 Sum_probs=38.1
Q ss_pred HHHHHHHHHcCCCeEEEeeeecCCc-c--------cCCCCCC-CCcccc--cCCCCCchHHHHHHHHhhcCCC
Q psy1381 39 NHWADILASSGAKYVVLTSKHHEGY-T--------LWPSKYA-FSWNSM--DIGPKRDLVDYTFGNWFTGGSP 99 (102)
Q Consensus 39 ~~Wa~l~k~aGakyvvlTtKHHdGF-~--------lW~S~~~-~~~~s~--~~~p~rDiv~el~~a~~~~Gl~ 99 (102)
+++.+.++++.-.-+|+.+-||.+. - +..+... .+|..- ......++..+|.+.+...|++
T Consensus 32 ~~l~~~l~~~~PD~iVIigpdH~~~f~~d~~P~f~i~~~~~~~gd~~~~~g~~~~d~eLA~~i~~~~~~~g~d 104 (313)
T PRK13370 32 AAAREFVAAFDPELVVLFAPDHYNGFFYDVMPPFCIGVSATAVGDYGTAAGPLPVPSDLAEALAEAVLDSGID 104 (313)
T ss_pred HHHHHHHHHhCCCEEEEEcCCcccccccccCCceEeccCCCcCcccccCCCCCCCCHHHHHHHHHHhHhcCCC
Confidence 5667777788889999999976543 2 2222221 122211 0111468899999999999986
No 164
>PRK10259 hypothetical protein; Provisional
Probab=32.65 E-value=64 Score=21.47 Aligned_cols=20 Identities=30% Similarity=0.270 Sum_probs=16.5
Q ss_pred HHHHHHHHHcCCCeEEEeee
Q psy1381 39 NHWADILASSGAKYVVLTSK 58 (102)
Q Consensus 39 ~~Wa~l~k~aGakyvvlTtK 58 (102)
++.++.+.++||+|..++.-
T Consensus 53 ~~La~KAd~~GA~~YrIi~a 72 (86)
T PRK10259 53 AKLAEKAAAAGASGYSITSA 72 (86)
T ss_pred HHHHHHHHHcCCCEEEEEEe
Confidence 67889999999997777654
No 165
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=32.55 E-value=57 Score=25.66 Aligned_cols=28 Identities=11% Similarity=0.265 Sum_probs=22.4
Q ss_pred cCCCCCC-CHHHHHHHHHHcCCCeEEEee
Q psy1381 30 DFTAEFF-DANHWADILASSGAKYVVLTS 57 (102)
Q Consensus 30 ~F~p~~f-Dp~~Wa~l~k~aGakyvvlTt 57 (102)
.|++++| ||++.++.+++.|.|.++.+-
T Consensus 66 ~~d~~~FPdp~~mi~~L~~~g~k~~~~i~ 94 (317)
T cd06599 66 NWNKDRFPDPAAFVAKFHERGIRLAPNIK 94 (317)
T ss_pred ecCcccCCCHHHHHHHHHHCCCEEEEEeC
Confidence 4566654 899999999999999987543
No 166
>PF14698 ASL_C2: Argininosuccinate lyase C-terminal; PDB: 1XWO_A 2E9F_A 1TJW_C 1TJU_A 1DCN_B 1K7W_B 1HY1_C 1TJV_B 1AUW_A 1U15_B ....
Probab=32.49 E-value=37 Score=21.26 Aligned_cols=16 Identities=19% Similarity=0.119 Sum_probs=14.0
Q ss_pred chHHHHHHHHhhcCCC
Q psy1381 84 DLVDYTFGNWFTGGSP 99 (102)
Q Consensus 84 Div~el~~a~~~~Gl~ 99 (102)
.||+.+|..|.+.|++
T Consensus 23 ~iVg~~V~~a~~~~~~ 38 (70)
T PF14698_consen 23 HIVGRLVRLAEEEGKP 38 (70)
T ss_dssp HHHHHHHHHHHHTTS-
T ss_pred HHHHHHHHHHHHcCCC
Confidence 6999999999999986
No 167
>cd07584 nitrilase_6 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=32.47 E-value=1.2e+02 Score=22.22 Aligned_cols=58 Identities=14% Similarity=0.031 Sum_probs=35.1
Q ss_pred HHHHHHHHHcCCCeEEEeeeecCCcccCCCCCCCCcccccCCCCCchHHHHHHHHhhcCC
Q psy1381 39 NHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVDYTFGNWFTGGS 98 (102)
Q Consensus 39 ~~Wa~l~k~aGakyvvlTtKHHdGF~lW~S~~~~~~~s~~~~p~rDiv~el~~a~~~~Gl 98 (102)
.++++.+++.|++.+||------||.+++-... .+. .......+++..|.+.+++.|+
T Consensus 22 ~~~i~~a~~~ga~liv~PE~~l~g~~~~~~~~~-~~~-~~~~~~~~~~~~l~~~a~~~~i 79 (258)
T cd07584 22 AELCKEAAAEGADLICFPELATTGYRPDLLGPK-LWE-LSEPIDGPTVRLFSELAKELGV 79 (258)
T ss_pred HHHHHHHHHcCCCEEEcccccccCCCccccchh-hHh-hccCCCCcHHHHHHHHHHHcCe
Confidence 456777778899999977666667776432211 010 1111124577778888888765
No 168
>PRK12928 lipoyl synthase; Provisional
Probab=32.47 E-value=66 Score=25.36 Aligned_cols=29 Identities=31% Similarity=0.430 Sum_probs=21.7
Q ss_pred CCCCCHHHHHHH---HHHcCCCeEEEeeeecC
Q psy1381 33 AEFFDANHWADI---LASSGAKYVVLTSKHHE 61 (102)
Q Consensus 33 p~~fDp~~Wa~l---~k~aGakyvvlTtKHHd 61 (102)
+-..++++..+. +++.|.++++||.-++|
T Consensus 84 ~~~~~~eei~~~a~~~~~~G~keivitg~~~d 115 (290)
T PRK12928 84 PMPLDPDEPERVAEAVAALGLRYVVLTSVARD 115 (290)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEEEEeCC
Confidence 344677666554 46789999999998885
No 169
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=32.38 E-value=1e+02 Score=24.24 Aligned_cols=55 Identities=9% Similarity=0.007 Sum_probs=40.5
Q ss_pred hHHHHHHHHhCCCCC-------------ChHHhhccCCC-CCCCHH-HHHHHHHHcCCCeEEEeeeecCCc
Q psy1381 8 STVTKFMERNYKPGF-------------TYQDFAKDFTA-EFFDAN-HWADILASSGAKYVVLTSKHHEGY 63 (102)
Q Consensus 8 ~~y~~~~~~~~~~~~-------------~Y~~~a~~F~p-~~fDp~-~Wa~l~k~aGakyvvlTtKHHdGF 63 (102)
++..+=+.+.||+.. .|.=....|.- +.++|. ++++.+.+. ++.+++|.-.-||-
T Consensus 115 ~~~~~~i~~~fG~~~IvvsiD~k~~~~g~~~V~~~GW~~~t~~~~~~e~~~~~~~~-~~~il~TdI~rDGt 184 (253)
T TIGR02129 115 LKRLKEIVSLVGKDRLIVDLSCRKTQDGRWIVAMNKWQTITDLELNAETLEELSKY-CDEFLIHAADVEGL 184 (253)
T ss_pred HHHHHHHHHHhCCCCEEEEEEEEEcCCCcEEEEECCCcccCCCChHHHHHHHHHhh-CCEEEEeeecccCc
Confidence 667777777886431 11223445633 799998 999999999 99999999999874
No 170
>cd08802 Death_UNC5B Death domain found in Uncoordinated-5B. Death Domain (DD) found in Uncoordinated-5B (UNC5B). UNC5B is part of the UNC-5 homolog family. It is a receptor for the secreted netrin-1 and plays a role in axonal guidance, angiogenesis, and apoptosis. UNC5B signaling is involved in the netrin-1-induced proliferation and migration of renal proximal tubular cells. It is also required for vascular patterning during embryonic development, and its activation inhibits sprouting angiogenesis. UNC5 proteins are transmembrane proteins with an extracellular domain consisting of two immunoglobulin repeats, two thrombospondin type-I modules and an intracellular region containing a ZU-5 domain, UPA domain and a DD. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activatio
Probab=32.26 E-value=17 Score=24.15 Aligned_cols=65 Identities=14% Similarity=0.168 Sum_probs=44.5
Q ss_pred HhhccCCCCCCCHHHHHHHHHHcCCC-eEEEeeeecCCcccCCCCCC---CCcccccCCCCCchHHHHHHHHhhcCCC
Q psy1381 26 DFAKDFTAEFFDANHWADILASSGAK-YVVLTSKHHEGYTLWPSKYA---FSWNSMDIGPKRDLVDYTFGNWFTGGSP 99 (102)
Q Consensus 26 ~~a~~F~p~~fDp~~Wa~l~k~aGak-yvvlTtKHHdGF~lW~S~~~---~~~~s~~~~p~rDiv~el~~a~~~~Gl~ 99 (102)
++..-++|..=....|..+|++.|.. |+ .-|..-||.+. ..|-..+. +..+| ++|.++.++-|-+
T Consensus 8 kLc~~Ld~p~~~g~DW~~LAekL~ld~yl-------~~f~~~psPT~~LLd~WE~~~~-~~~~v-~~L~~~L~~mgR~ 76 (84)
T cd08802 8 KICNSLDAPNSRGNDWRLLAQKLSMDRYL-------NYFATKASPTGVILDLWEARHQ-DDGDL-NSLASALEEMGKS 76 (84)
T ss_pred HHHHHhCCCCCCCCcHHHHHHHcCchhHH-------HHHHcCCCcHHHHHHHHHhcCC-CcccH-HHHHHHHHHcCcc
Confidence 45666777777778899999999998 43 26777676664 34533322 23454 8999998887743
No 171
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=32.21 E-value=72 Score=23.94 Aligned_cols=50 Identities=22% Similarity=0.142 Sum_probs=33.5
Q ss_pred CCCHHHHHHHHHHcCCCeEEEeeeecCCcccCCCCCCCCcccccCCCCCchHHHHHHHHhhcCCCC
Q psy1381 35 FFDANHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVDYTFGNWFTGGSPG 100 (102)
Q Consensus 35 ~fDp~~Wa~l~k~aGakyvvlTtKHHdGF~lW~S~~~~~~~s~~~~p~rDiv~el~~a~~~~Gl~~ 100 (102)
-|++.| +.++.+|||.|+-+...=-+ + ...++..+|+++.+.|+++|++-
T Consensus 109 V~s~~Q-a~~Aa~AGA~yvsP~vgR~~-----------~----~g~dg~~~i~~i~~~~~~~~~~t 158 (211)
T cd00956 109 IFSAAQ-ALLAAKAGATYVSPFVGRID-----------D----LGGDGMELIREIRTIFDNYGFDT 158 (211)
T ss_pred ecCHHH-HHHHHHcCCCEEEEecChHh-----------h----cCCCHHHHHHHHHHHHHHcCCCc
Confidence 577777 55667789888654433222 1 11236789999999999999873
No 172
>PLN00196 alpha-amylase; Provisional
Probab=31.78 E-value=99 Score=25.81 Aligned_cols=57 Identities=19% Similarity=0.298 Sum_probs=33.9
Q ss_pred HHHHHHHHHcCCCeEEEeeeecC----CcccCCCCCCCCcccccCCCCCchHHHHHHHHhhcCCC
Q psy1381 39 NHWADILASSGAKYVVLTSKHHE----GYTLWPSKYAFSWNSMDIGPKRDLVDYTFGNWFTGGSP 99 (102)
Q Consensus 39 ~~Wa~l~k~aGakyvvlTtKHHd----GF~lW~S~~~~~~~s~~~~p~rDiv~el~~a~~~~Gl~ 99 (102)
.+=++-++++|..-|-|+--.+. |+ |++..- +-+..+.| ..+-+++|+++|+++||-
T Consensus 47 ~~kldyL~~LGvtaIWL~P~~~s~s~hGY--~~~D~y-~ld~~~fG-t~~elk~Lv~~aH~~GIk 107 (428)
T PLN00196 47 MGKVDDIAAAGITHVWLPPPSHSVSEQGY--MPGRLY-DLDASKYG-NEAQLKSLIEAFHGKGVQ 107 (428)
T ss_pred HHHHHHHHHcCCCEEEeCCCCCCCCCCCC--CccccC-CCCcccCC-CHHHHHHHHHHHHHCCCE
Confidence 34567789999999988853221 22 222211 00111223 345688999999999983
No 173
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=31.42 E-value=76 Score=23.11 Aligned_cols=20 Identities=10% Similarity=0.104 Sum_probs=11.6
Q ss_pred HHHHHHHHHcCCCeEEEeee
Q psy1381 39 NHWADILASSGAKYVVLTSK 58 (102)
Q Consensus 39 ~~Wa~l~k~aGakyvvlTtK 58 (102)
..+++.+.++||.++.+-+-
T Consensus 70 ~~~~~~~~~~gad~vtvh~e 89 (215)
T PRK13813 70 RLICEAVFEAGAWGIIVHGF 89 (215)
T ss_pred HHHHHHHHhCCCCEEEEcCc
Confidence 44446666677766655443
No 174
>PRK12568 glycogen branching enzyme; Provisional
Probab=31.42 E-value=1.7e+02 Score=26.53 Aligned_cols=59 Identities=12% Similarity=0.039 Sum_probs=35.8
Q ss_pred HHHHHHHHHcCCCeEEEeee--ecCCcccCCCCCCCCcccccC-CCCCchHHHHHHHHhhcCCC
Q psy1381 39 NHWADILASSGAKYVVLTSK--HHEGYTLWPSKYAFSWNSMDI-GPKRDLVDYTFGNWFTGGSP 99 (102)
Q Consensus 39 ~~Wa~l~k~aGakyvvlTtK--HHdGF~lW~S~~~~~~~s~~~-~p~rDiv~el~~a~~~~Gl~ 99 (102)
++.++-++++|...|-|+-- |..+ .-|--... .|.++.. -...+=+++|+++|+++||-
T Consensus 273 ~~ll~ylk~LGvt~I~LmPi~e~~~~-~~wGY~~~-~~~a~~~~~G~~~dfk~lV~~~H~~Gi~ 334 (730)
T PRK12568 273 EQLIPYVQQLGFTHIELLPITEHPFG-GSWGYQPL-GLYAPTARHGSPDGFAQFVDACHRAGIG 334 (730)
T ss_pred HHHHHHHHHcCCCEEEECccccCCCC-CCCCCCCC-cCCccCcccCCHHHHHHHHHHHHHCCCE
Confidence 45667789999999988765 3211 12322222 1112221 12356789999999999983
No 175
>cd07370 HPCD The Class III extradiol dioxygenase, homoprotocatechuate 2,3-dioxygenase, catalyzes the key ring cleavage step in the metabolism of homoprotocatechuate. 3,4-dihydroxyphenylacetate (homoprotocatechuate) 2,3-dioxygenase (HPCD) catalyzes the key ring cleavage step in the metabolism of homoprotocatechuate (hpca), a central intermediate in the bacterial degradation of aromatic compounds. The enzyme incorporates both atoms of molecular oxygen into hpca, resulting in aromatic ring-opening to yield alpha-hydroxy-delta-carboxymethyl cis-muconic semialdehyde. HPCD is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon.
Probab=31.42 E-value=1.6e+02 Score=22.72 Aligned_cols=53 Identities=15% Similarity=0.181 Sum_probs=33.1
Q ss_pred HcCCCeEEEeeeec---CCcccCCCCCCC-Ccc---------ccc--CCCCCchHHHHHHHHhhcCCC
Q psy1381 47 SSGAKYVVLTSKHH---EGYTLWPSKYAF-SWN---------SMD--IGPKRDLVDYTFGNWFTGGSP 99 (102)
Q Consensus 47 ~aGakyvvlTtKHH---dGF~lW~S~~~~-~~~---------s~~--~~p~rDiv~el~~a~~~~Gl~ 99 (102)
+..-+.+|+.+-|+ .+|++-...... .|. .+. .....+++.++++.+++.|++
T Consensus 43 ~~~Pd~ivviS~H~~~~~~~~i~~~~~~~g~~~~~g~p~~~~~i~~~~~gd~ela~~i~~~~~~~g~~ 110 (280)
T cd07370 43 ELGVDTIVVFDTHWLVNAGYHINANARFSGLFTSNELPHFIADMPYDYAGDPELAHLIAEEATEHGVK 110 (280)
T ss_pred HcCCCEEEEECCCcccccceeEeccCCCCceecCCCCCchhcCCCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 44568999999998 345533332210 111 111 122568999999999999987
No 176
>PTZ00032 60S ribosomal protein L18; Provisional
Probab=31.06 E-value=34 Score=26.54 Aligned_cols=41 Identities=15% Similarity=0.038 Sum_probs=30.5
Q ss_pred HHHHHHHHHcCCCeEEEeeeecCCcccCCCCCCCCcccccCCCCCchHHHHHHHHhhcCCC
Q psy1381 39 NHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVDYTFGNWFTGGSP 99 (102)
Q Consensus 39 ~~Wa~l~k~aGakyvvlTtKHHdGF~lW~S~~~~~~~s~~~~p~rDiv~el~~a~~~~Gl~ 99 (102)
+..++.+++.|.+-|||=-. || -| .--|+.|++++|+.||-
T Consensus 170 k~IAerAl~kGI~kVvFDRg---Gy---------~Y--------HGRVkALAdaARe~GLk 210 (211)
T PTZ00032 170 KLIGRKALSKGISKVRFDRA---HY---------KY--------AGKVEALAEGARAVGLQ 210 (211)
T ss_pred HHHHHHHHHCCCCEEEEeCC---CC---------ee--------hhHHHHHHHHHHHcCCC
Confidence 66788899999988887421 11 11 34699999999999984
No 177
>PF14572 Pribosyl_synth: Phosphoribosyl synthetase-associated domain; PDB: 2H07_B 2H06_B 3S5J_B 2HCR_A 3EFH_A 2H08_A 1DKR_B 1DKU_B 1IBS_B 2JI4_A ....
Probab=31.03 E-value=47 Score=25.07 Aligned_cols=22 Identities=32% Similarity=0.338 Sum_probs=19.2
Q ss_pred HHHHHHHHHcCCCeEEEeeeec
Q psy1381 39 NHWADILASSGAKYVVLTSKHH 60 (102)
Q Consensus 39 ~~Wa~l~k~aGakyvvlTtKHH 60 (102)
-.-++++|+.||+.|...+-|-
T Consensus 100 ~~aA~~Lk~~GA~~V~~~aTHg 121 (184)
T PF14572_consen 100 IKAAELLKERGAKKVYACATHG 121 (184)
T ss_dssp HHHHHHHHHTTESEEEEEEEEE
T ss_pred HHHHHHHHHcCCCEEEEEEeCc
Confidence 4568899999999999999994
No 178
>cd07364 PCA_45_Dioxygenase_B Subunit B of the Class III extradiol dioxygenase, Protocatechuate 4,5-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of protocatechuate. Protocatechuate 4,5-dioxygenase (LigAB) catalyzes the oxidization and subsequent ring-opening of protocatechuate (or 3,4-dihydroxybenzoic acid, PCA), an intermediate in the breakdown of lignin and other compounds. Protocatechuate 4,5-dioxygenase is an aromatic ring opening dioxygenase belonging to the class III extradiol enzyme family, a group of enyzmes that cleaves aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon using a non-heme Fe(II). LigAB is composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. The B subunit (LigB) is the catalytic subunit of LigAB.
Probab=30.97 E-value=1.5e+02 Score=23.24 Aligned_cols=62 Identities=8% Similarity=0.058 Sum_probs=38.5
Q ss_pred HHHHHHHHHcCCCeEEEe-eeecCCc--------ccCCCCCC--CC--cc---cccCCCCCchHHHHHHHHhhcCCCC
Q psy1381 39 NHWADILASSGAKYVVLT-SKHHEGY--------TLWPSKYA--FS--WN---SMDIGPKRDLVDYTFGNWFTGGSPG 100 (102)
Q Consensus 39 ~~Wa~l~k~aGakyvvlT-tKHHdGF--------~lW~S~~~--~~--~~---s~~~~p~rDiv~el~~a~~~~Gl~~ 100 (102)
++..+.+++++..=+|+. .-|..+| |+.....- .. |. ........+|..++++.+++.|++-
T Consensus 38 ~~~~~~~~~~~pD~vVvi~~dH~~~f~~~~~P~f~i~~~~~~~~~~~~~g~~~~~~~~g~~~LA~~i~~~~~~~g~~~ 115 (277)
T cd07364 38 QPARDWIKKNKPDVAIIVYNDHASAFDLDIIPTFAIGTAEEFQPADEGYGPRPVPDVQGHPDLAWHIAQSLILDDFDM 115 (277)
T ss_pred HHHHHHHHHhCCCEEEEEcCchHHhhcccCCCceEEeeccccccCccccCCCCCCCCCCCHHHHHHHHHHHHHcCCCE
Confidence 456677788888889987 5565443 33333221 00 11 1122336799999999999999863
No 179
>cd00617 Tnase_like Tryptophanase family (Tnase). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.
Probab=30.79 E-value=1e+02 Score=25.71 Aligned_cols=50 Identities=16% Similarity=0.135 Sum_probs=33.8
Q ss_pred CCHHHHHHHHHHcC---CCeEEEeeeecCCcccCCCCCCCCcccccCCCCCchHHHHHHHHhhcCCC
Q psy1381 36 FDANHWADILASSG---AKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVDYTFGNWFTGGSP 99 (102)
Q Consensus 36 fDp~~Wa~l~k~aG---akyvvlTtKHHdGF~lW~S~~~~~~~s~~~~p~rDiv~el~~a~~~~Gl~ 99 (102)
+|+++..+++.+-| .+.++++.-|+..+ -.....+-++++.+-|+++||+
T Consensus 136 iD~e~Le~~I~~~~~~~~~~I~v~~p~N~~g--------------G~~~s~~~l~~i~eia~~~gi~ 188 (431)
T cd00617 136 IDVAKLEKLIDEVGAENIPYIVLTITNNTAG--------------GQPVSMANLREVRELAHKYGIP 188 (431)
T ss_pred cCHHHHHHHhCcccCCCccEEEEECCcCCCC--------------CccCCHHHHHHHHHHHHHcCCE
Confidence 78899988887654 55666665554310 0011367788999999999986
No 180
>PRK02126 ribonuclease Z; Provisional
Probab=30.68 E-value=75 Score=25.49 Aligned_cols=26 Identities=15% Similarity=0.244 Sum_probs=23.0
Q ss_pred CCCCHHHHHHHHHHcCCCeEEEeeeecC
Q psy1381 34 EFFDANHWADILASSGAKYVVLTSKHHE 61 (102)
Q Consensus 34 ~~fDp~~Wa~l~k~aGakyvvlTtKHHd 61 (102)
-...+++-+++++++|++.+||| |+.
T Consensus 289 gH~t~~~a~~lA~~a~vk~LvLt--H~s 314 (334)
T PRK02126 289 NHLTARQAGRLAREAGVKRLLPF--HFS 314 (334)
T ss_pred CCCCHHHHHHHHHHcCCCEEEEE--ecC
Confidence 47789999999999999999998 765
No 181
>cd07949 PCA_45_Doxase_B_like_1 The B subunit of unknown Class III extradiol dioxygenases with similarity to Protocatechuate 4,5-dioxygenase. This subfamily is composed of proteins of unknown function with similarity to the B subunit of Protocatechuate 4,5-dioxygenase (LigAB). LigAB belongs to the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Dioxygenases play key roles in the degradation of aromatic compounds. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.
Probab=30.42 E-value=1.7e+02 Score=22.96 Aligned_cols=62 Identities=10% Similarity=0.011 Sum_probs=42.0
Q ss_pred HHHHHHHHHcCCCeEEEeee-ecC--------CcccCCCCC-CCC---cc---cccCCCCCchHHHHHHHHhhcCCCC
Q psy1381 39 NHWADILASSGAKYVVLTSK-HHE--------GYTLWPSKY-AFS---WN---SMDIGPKRDLVDYTFGNWFTGGSPG 100 (102)
Q Consensus 39 ~~Wa~l~k~aGakyvvlTtK-HHd--------GF~lW~S~~-~~~---~~---s~~~~p~rDiv~el~~a~~~~Gl~~ 100 (102)
++..+.++++...-+|+++. |.. .||+-..+. ..+ |. ........+|..++++.+.+.|++-
T Consensus 38 ~~~~~~v~~~~PD~iVvis~dH~~~f~~~~~p~f~i~~~~~~~g~~~~~g~~~~~~~~g~~~LA~~i~~~~~~~g~d~ 115 (276)
T cd07949 38 PPVHDWLEKAKPDVAVVFYNDHGLNFFLDKMPTFAVGAAPSYRNADEGWGIPALAPFKGDPELSWHLIESLVEDEFDI 115 (276)
T ss_pred HHHHHHHHHcCCCEEEEECCcHHhhhccccCCcEEEecCccccCcccccCCCCCCCCCCCHHHHHHHHHHHHHcCCCe
Confidence 67778888999999999995 844 456663332 101 11 1222236799999999999999863
No 182
>PRK14864 putative biofilm stress and motility protein A; Provisional
Probab=30.42 E-value=71 Score=21.98 Aligned_cols=22 Identities=18% Similarity=0.261 Sum_probs=19.1
Q ss_pred HHHHHHHHHcCCCeEEEeeeec
Q psy1381 39 NHWADILASSGAKYVVLTSKHH 60 (102)
Q Consensus 39 ~~Wa~l~k~aGakyvvlTtKHH 60 (102)
++.++-+.++||+|..++.-|-
T Consensus 67 ~~La~KAda~GA~yYrIi~~~e 88 (104)
T PRK14864 67 REIQAKANAAGADYYVIVMVDE 88 (104)
T ss_pred HHHHHHHHHcCCCEEEEEEccc
Confidence 6788889999999999998854
No 183
>PF08543 Phos_pyr_kin: Phosphomethylpyrimidine kinase; InterPro: IPR013749 This enzyme 2.7.4.7 from EC is part of the Thiamine pyrophosphate (TPP) synthesis pathway, TPP is an essential cofactor for many enzymes []. ; PDB: 2DDW_B 2DDO_B 2DDM_A 3IBQ_A 3H74_A 3HYO_A 1UB0_A 1VI9_D 1TD2_B 2PHP_D ....
Probab=30.29 E-value=63 Score=24.28 Aligned_cols=63 Identities=27% Similarity=0.322 Sum_probs=39.9
Q ss_pred CHHHHHHHHHHcCCCeEEEeeeec---CC---cccCCCCCCCCcccccCC-----CCCchHHHHHHHHhhcCCC
Q psy1381 37 DANHWADILASSGAKYVVLTSKHH---EG---YTLWPSKYAFSWNSMDIG-----PKRDLVDYTFGNWFTGGSP 99 (102)
Q Consensus 37 Dp~~Wa~l~k~aGakyvvlTtKHH---dG---F~lW~S~~~~~~~s~~~~-----p~rDiv~el~~a~~~~Gl~ 99 (102)
+..+.++.+.+.|++.||+|.-|. ++ ..+++.+....+...... .-.|++.-+..++-..|.+
T Consensus 143 ~~~~~~~~l~~~G~~~VvItg~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~GTGd~fss~laa~l~~g~~ 216 (246)
T PF08543_consen 143 DIEEAAKALLALGPKNVVITGGHLDGDEGIITDVLYDGGEFYWLSSPRIPTGSFHGTGDLFSSALAAFLAKGYS 216 (246)
T ss_dssp HHHHHHHHHHHTS-SEEEEEEEEGGSSCEEEEEEEETTSEEEEEEEEEECTSGCTTHHHHHHHHHHHHHHTTSS
T ss_pred hHHHHHHHHHHhCCceEEEeeeccccccccccceeeeccceeecceeEEcCCCCCCchhHHHHHHHHHHHcCCC
Confidence 445677777789999999999996 22 455543333222222212 2369999998888888764
No 184
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=30.16 E-value=67 Score=24.19 Aligned_cols=24 Identities=21% Similarity=0.184 Sum_probs=21.2
Q ss_pred CHHHHHHHHHHcCCCeEEEeeeec
Q psy1381 37 DANHWADILASSGAKYVVLTSKHH 60 (102)
Q Consensus 37 Dp~~Wa~l~k~aGakyvvlTtKHH 60 (102)
||.++++.+.++|++.+.++----
T Consensus 31 d~~~~a~~~~~~G~~~i~i~dl~~ 54 (253)
T PRK02083 31 DPVELAKRYNEEGADELVFLDITA 54 (253)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCc
Confidence 999999999999999999886543
No 185
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=29.94 E-value=55 Score=25.11 Aligned_cols=18 Identities=11% Similarity=-0.129 Sum_probs=14.9
Q ss_pred CchHHHHHHHHhhcCCCC
Q psy1381 83 RDLVDYTFGNWFTGGSPG 100 (102)
Q Consensus 83 rDiv~el~~a~~~~Gl~~ 100 (102)
...++++++.|+++|+|-
T Consensus 125 ~~~~~~v~~~~~~~g~pl 142 (267)
T PRK07226 125 LEDLGEVAEECEEWGMPL 142 (267)
T ss_pred HHHHHHHHHHHHHcCCcE
Confidence 457888899999999984
No 186
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=29.91 E-value=1.4e+02 Score=24.38 Aligned_cols=50 Identities=12% Similarity=-0.052 Sum_probs=33.6
Q ss_pred HHHHHHHHcCCCeEEEeeeecCCcccCCCCCCCCcccccCCCCCchHHHHHHHHhhcCCCC
Q psy1381 40 HWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVDYTFGNWFTGGSPG 100 (102)
Q Consensus 40 ~Wa~l~k~aGakyvvlTtKHHdGF~lW~S~~~~~~~s~~~~p~rDiv~el~~a~~~~Gl~~ 100 (102)
+-|+.++++|++++- . ..|+..++ +| ...|++.+=+.+|.+.|++.|||-
T Consensus 136 ~~A~~lk~~g~~~~r------~--~~~kpRts-p~--~f~g~~~e~l~~L~~~~~~~Gl~~ 185 (360)
T PRK12595 136 AVAKALKAKGLKLLR------G--GAFKPRTS-PY--DFQGLGVEGLKILKQVADEYGLAV 185 (360)
T ss_pred HHHHHHHHcCCcEEE------c--cccCCCCC-Cc--cccCCCHHHHHHHHHHHHHcCCCE
Confidence 445566666766544 1 45665555 32 255777788999999999999973
No 187
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=29.89 E-value=76 Score=24.84 Aligned_cols=31 Identities=23% Similarity=0.216 Sum_probs=24.5
Q ss_pred CCCCHHHHHHHHHHcCCCeE-EEeeeecCCcc
Q psy1381 34 EFFDANHWADILASSGAKYV-VLTSKHHEGYT 64 (102)
Q Consensus 34 ~~fDp~~Wa~l~k~aGakyv-vlTtKHHdGF~ 64 (102)
+.+||.+||..+.++||.-+ |+|-.|+-|..
T Consensus 59 ~~~d~~~~A~~y~~~GA~aISVlTe~~~F~Gs 90 (247)
T PRK13957 59 ADYHPVQIAKTYETLGASAISVLTDQSYFGGS 90 (247)
T ss_pred CCCCHHHHHHHHHHCCCcEEEEEcCCCcCCCC
Confidence 46999999999999999765 66666665544
No 188
>PRK03972 ribosomal biogenesis protein; Validated
Probab=29.51 E-value=2.1e+02 Score=22.05 Aligned_cols=60 Identities=12% Similarity=-0.015 Sum_probs=44.6
Q ss_pred CCCCCChHHHHHHHHhC--CCCCChHHhhccCCCCCCCHHHHHHHHHHcCCCeEEEeeeec---CCcccCC
Q psy1381 2 LSENPNSTVTKFMERNY--KPGFTYQDFAKDFTAEFFDANHWADILASSGAKYVVLTSKHH---EGYTLWP 67 (102)
Q Consensus 2 ~~~~~~~~y~~~~~~~~--~~~~~Y~~~a~~F~p~~fDp~~Wa~l~k~aGakyvvlTtKHH---dGF~lW~ 67 (102)
-|++|++.-.+|+++=- .|+. ..++=.++.-++.++.|.+-|+..+|++..|+ +|..+.+
T Consensus 6 TSr~PS~rtr~F~keL~~v~Pns------~~i~RGk~~lkel~~~A~~~g~TdLIVV~E~rg~P~~L~i~h 70 (208)
T PRK03972 6 TSHRPTRRTRSFGHDLERVFPNS------LYLTRGKKTIQDLLMEAYDRGYERLLIINVWKGNPLKMTFIK 70 (208)
T ss_pred CCCCccHHHHHHHHHHHHhCCCC------EEEecCCccHHHHHHHHHHCCCCeEEEEecCCCcCCeEEEEc
Confidence 37899999999988621 2222 23455688899999999999999999998876 5555554
No 189
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=29.44 E-value=1.3e+02 Score=24.10 Aligned_cols=60 Identities=7% Similarity=0.068 Sum_probs=34.2
Q ss_pred cCCCCCCCHHHHHHHHHHcCCCeEEEeeeecCCcccCCCCCCCCcccccCCCCCchHHHHHHHHhhcCCC
Q psy1381 30 DFTAEFFDANHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVDYTFGNWFTGGSP 99 (102)
Q Consensus 30 ~F~p~~fDp~~Wa~l~k~aGakyvvlTtKHHdGF~lW~S~~~~~~~s~~~~p~rDiv~el~~a~~~~Gl~ 99 (102)
.-+|+.++ ++.+++++++|++.+-+-..+-+ .++- ..+..+-..+-+.+.++.+|++|+.
T Consensus 95 E~nP~~lt-~e~l~~lk~~G~nrisiGvQS~~------d~vL---~~l~R~~~~~~~~~ai~~lr~~G~~ 154 (353)
T PRK05904 95 ECNPELIT-QSQINLLKKNKVNRISLGVQSMN------NNIL---KQLNRTHTIQDSKEAINLLHKNGIY 154 (353)
T ss_pred EeccCcCC-HHHHHHHHHcCCCEEEEecccCC------HHHH---HHcCCCCCHHHHHHHHHHHHHcCCC
Confidence 34677776 45567777777777766555443 1110 1122222344566777888888764
No 190
>PRK08392 hypothetical protein; Provisional
Probab=29.38 E-value=89 Score=22.99 Aligned_cols=24 Identities=8% Similarity=0.011 Sum_probs=20.7
Q ss_pred CCCCHHHHHHHHHHcCCCeEEEee
Q psy1381 34 EFFDANHWADILASSGAKYVVLTS 57 (102)
Q Consensus 34 ~~fDp~~Wa~l~k~aGakyvvlTt 57 (102)
..-.+++.++.|.+.|.+.+.||-
T Consensus 12 ~~~~~~e~v~~A~~~Gl~~i~iTd 35 (215)
T PRK08392 12 GIGSVRDNIAEAERKGLRLVGISD 35 (215)
T ss_pred CcCCHHHHHHHHHHcCCCEEEEcc
Confidence 455699999999999999999874
No 191
>COG1166 SpeA Arginine decarboxylase (spermidine biosynthesis) [Amino acid transport and metabolism]
Probab=29.33 E-value=35 Score=30.39 Aligned_cols=53 Identities=21% Similarity=0.145 Sum_probs=33.5
Q ss_pred HHHcCCCeEEEeeeecCCccc-CC-CCCCCCcccccCCC---CCchHHHHHHHHhhcCCCC
Q psy1381 45 LASSGAKYVVLTSKHHEGYTL-WP-SKYAFSWNSMDIGP---KRDLVDYTFGNWFTGGSPG 100 (102)
Q Consensus 45 ~k~aGakyvvlTtKHHdGF~l-W~-S~~~~~~~s~~~~p---~rDiv~el~~a~~~~Gl~~ 100 (102)
+.++||+-=.| .=-.|... |+ |++. .+.|++++- -.|||..+.++|..+|+|-
T Consensus 293 L~klGa~i~~~--dVGGGLgVDYdGt~t~-~~~S~NY~l~eYA~dVV~~l~d~C~~~~~p~ 350 (652)
T COG1166 293 LRKLGANIKYF--DVGGGLGVDYDGTRTQ-SDCSKNYGLNEYANDVVWALKDACEEKGLPH 350 (652)
T ss_pred HHHcCCCceEE--eccCceeecccCcccc-ccccccCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34678872222 12234332 32 3443 456777766 4799999999999999985
No 192
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=29.32 E-value=68 Score=25.76 Aligned_cols=54 Identities=9% Similarity=-0.009 Sum_probs=35.1
Q ss_pred HHHHHHcCCCeEEEeeeecCCcccCCCCCCCCcccccCCC----CCchHHHHHHHHhhc
Q psy1381 42 ADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGP----KRDLVDYTFGNWFTG 96 (102)
Q Consensus 42 a~l~k~aGakyvvlTtKHHdGF~lW~S~~~~~~~s~~~~p----~rDiv~el~~a~~~~ 96 (102)
|+.+++||+..|=|-+-|.--++-+=|..+ |-.+-..|. +..++.|++++.|+.
T Consensus 148 A~~a~~aGfDgVeih~ahGyLl~qFlSp~~-N~RtD~yGGslenR~Rf~~eii~~ir~~ 205 (337)
T PRK13523 148 AVRAKEAGFDVIEIHGAHGYLINEFLSPLS-NKRTDEYGGSPENRYRFLREIIDAVKEV 205 (337)
T ss_pred HHHHHHcCCCEEEEccccchHHHHhcCCcc-CCcCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 446678899999999888554455555554 212223343 347788888888775
No 193
>PLN02334 ribulose-phosphate 3-epimerase
Probab=29.29 E-value=66 Score=23.95 Aligned_cols=21 Identities=14% Similarity=0.279 Sum_probs=18.0
Q ss_pred CHHHHHHHHHHcCCCeEEEee
Q psy1381 37 DANHWADILASSGAKYVVLTS 57 (102)
Q Consensus 37 Dp~~Wa~l~k~aGakyvvlTt 57 (102)
||+.+++++.++||.++.+-.
T Consensus 76 ~p~d~~~~~~~~gad~v~vH~ 96 (229)
T PLN02334 76 NPEDYVPDFAKAGASIFTFHI 96 (229)
T ss_pred CHHHHHHHHHHcCCCEEEEee
Confidence 789999999999999985543
No 194
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=29.12 E-value=66 Score=24.40 Aligned_cols=18 Identities=6% Similarity=0.196 Sum_probs=16.0
Q ss_pred HHHHHHHHHcCCCeEEEe
Q psy1381 39 NHWADILASSGAKYVVLT 56 (102)
Q Consensus 39 ~~Wa~l~k~aGakyvvlT 56 (102)
+.+++.++++|+..+++-
T Consensus 94 ~~fi~~~~~aG~~giiip 111 (242)
T cd04724 94 ERFLRDAKEAGVDGLIIP 111 (242)
T ss_pred HHHHHHHHHCCCcEEEEC
Confidence 999999999999988884
No 195
>PF03432 Relaxase: Relaxase/Mobilisation nuclease domain ; InterPro: IPR005094 Relaxases/mobilisation proteins are required for the horizontal transfer of genetic information contained on plasmids that occurs during bacterial conjugation. The relaxase, in conjunction with several auxiliary proteins, forms the relaxation complex or relaxosome. Relaxases nick duplex DNA in a specific manner by catalysing trans-esterification [].
Probab=29.12 E-value=89 Score=22.75 Aligned_cols=36 Identities=11% Similarity=0.186 Sum_probs=28.2
Q ss_pred HhhccCCCCCCCHHHHHHHH----HHcCC-CeEEEeeeecC
Q psy1381 26 DFAKDFTAEFFDANHWADIL----ASSGA-KYVVLTSKHHE 61 (102)
Q Consensus 26 ~~a~~F~p~~fDp~~Wa~l~----k~aGa-kyvvlTtKHHd 61 (102)
-+.-.|.|...+|++|.+++ ++.|. .+-++.+.|.|
T Consensus 59 h~i~Sf~~~e~~~e~~~~~~~~~~~~~~~~~~~~v~~~H~D 99 (242)
T PF03432_consen 59 HIIISFPPDELTPEQAHEIAREFAEEMGPGNHQYVVVVHTD 99 (242)
T ss_pred EEeccCCccccCHHHHHHHHHHHHHHcCCCCcceEEEECCC
Confidence 44557888779999998765 56777 78888888999
No 196
>PRK09929 hypothetical protein; Provisional
Probab=28.92 E-value=90 Score=21.06 Aligned_cols=21 Identities=29% Similarity=0.310 Sum_probs=17.8
Q ss_pred HHHHHHHHHcCCCeEEEeeee
Q psy1381 39 NHWADILASSGAKYVVLTSKH 59 (102)
Q Consensus 39 ~~Wa~l~k~aGakyvvlTtKH 59 (102)
++.++-+.++||+|.++|.-.
T Consensus 56 ~~La~KAd~~GA~yY~Ii~a~ 76 (91)
T PRK09929 56 EDLIKKADEKGADVLVLTSGQ 76 (91)
T ss_pred HHHHHHHHHcCCCEEEEEecC
Confidence 678889999999999998743
No 197
>PF08742 C8: C8 domain; InterPro: IPR014853 The proteins in this entry contained a domain rich in positionally conserved cysteine residues. Most proteins contains 7 or 8 cysteine residues. The domain is found in disease-related proteins including von Willebrand factor, Alpha tectorin, Zonadhesin and Mucin. It is often found on proteins containing IPR001846 from INTERPRO and IPR002919 from INTERPRO.
Probab=28.75 E-value=42 Score=20.50 Aligned_cols=20 Identities=5% Similarity=-0.213 Sum_probs=17.2
Q ss_pred CCchHHHHHHHHhhcCCCCC
Q psy1381 82 KRDLVDYTFGNWFTGGSPGK 101 (102)
Q Consensus 82 ~rDiv~el~~a~~~~Gl~~~ 101 (102)
--+.+.+++.+|+..|+...
T Consensus 46 ~C~~l~~Ya~~C~~~g~~~~ 65 (74)
T PF08742_consen 46 LCEALSAYARECQRAGICVG 65 (74)
T ss_pred hhHHHHHHHHHHHHCcCCCC
Confidence 46899999999999998753
No 198
>PRK14706 glycogen branching enzyme; Provisional
Probab=28.71 E-value=1.6e+02 Score=26.01 Aligned_cols=58 Identities=12% Similarity=0.074 Sum_probs=35.1
Q ss_pred HHHHHHHHcCCCeEEEeee--ecCCcccCCCCCCCCcccccCCC-CCchHHHHHHHHhhcCCC
Q psy1381 40 HWADILASSGAKYVVLTSK--HHEGYTLWPSKYAFSWNSMDIGP-KRDLVDYTFGNWFTGGSP 99 (102)
Q Consensus 40 ~Wa~l~k~aGakyvvlTtK--HHdGF~lW~S~~~~~~~s~~~~p-~rDiv~el~~a~~~~Gl~ 99 (102)
..++-++++|...|-|.-- |- +-.-|--..+ +|.++.... ..+=+++|+++|+++||.
T Consensus 172 ~l~~ylk~lG~t~velmPv~e~~-~~~~wGY~~~-~~~~~~~~~g~~~~~~~lv~~~H~~gi~ 232 (639)
T PRK14706 172 RLGEYVTYMGYTHVELLGVMEHP-FDGSWGYQVT-GYYAPTSRLGTPEDFKYLVNHLHGLGIG 232 (639)
T ss_pred HHHHHHHHcCCCEEEccchhcCC-CCCCCCcCcc-cccccccccCCHHHHHHHHHHHHHCCCE
Confidence 3456689999999877643 31 1112433333 233333222 346689999999999984
No 199
>PLN02411 12-oxophytodienoate reductase
Probab=28.64 E-value=83 Score=25.79 Aligned_cols=54 Identities=7% Similarity=-0.057 Sum_probs=34.2
Q ss_pred HHHHHHcCCCeEEEeeeecCCcccCCCCCCCCcccccCCC----CCchHHHHHHHHhhc
Q psy1381 42 ADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGP----KRDLVDYTFGNWFTG 96 (102)
Q Consensus 42 a~l~k~aGakyvvlTtKHHdGF~lW~S~~~~~~~s~~~~p----~rDiv~el~~a~~~~ 96 (102)
|+.|++||+..|=|-+-|.==+.-|=|..+ |-.+-..|. +.-++.|++++.|+.
T Consensus 171 A~rA~~AGFDGVEIH~AhGYLl~QFLSp~t-N~RtDeYGGSlENR~RF~lEIi~aVr~~ 228 (391)
T PLN02411 171 ALNAIRAGFDGIEIHGAHGYLIDQFLKDGI-NDRTDEYGGSIENRCRFLMQVVQAVVSA 228 (391)
T ss_pred HHHHHHcCCCEEEEccccchHHHHhCCCcc-CCCCCcCCCCHHHHhHHHHHHHHHHHHH
Confidence 457789999999998888443444555555 212223443 346777777777654
No 200
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=28.57 E-value=1.4e+02 Score=24.84 Aligned_cols=60 Identities=15% Similarity=0.147 Sum_probs=36.3
Q ss_pred HHHHHHHHHHcCCCeEEEeeeecC--CcccCCCCCC-CCcc---------cccCCC-CCchHHHHHHHHhhcCCC
Q psy1381 38 ANHWADILASSGAKYVVLTSKHHE--GYTLWPSKYA-FSWN---------SMDIGP-KRDLVDYTFGNWFTGGSP 99 (102)
Q Consensus 38 p~~Wa~l~k~aGakyvvlTtKHHd--GF~lW~S~~~-~~~~---------s~~~~p-~rDiv~el~~a~~~~Gl~ 99 (102)
-.+.++-++++|+..+-|+--... | .|.-.+. .+|. .++..- ..+=+++|+++|+++||-
T Consensus 24 I~~kldyl~~LGvtaIwl~P~~~~~~~--~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~Li~~~H~~Gi~ 96 (479)
T PRK09441 24 LAERAPELAEAGITAVWLPPAYKGTSG--GYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNAIDALHENGIK 96 (479)
T ss_pred HHHHHHHHHHcCCCEEEeCCCccCCCC--CCCCCCCeecccccccccccCCcCcCcCCHHHHHHHHHHHHHCCCE
Confidence 456678999999999998864332 1 1111121 0111 112111 356689999999999983
No 201
>TIGR01703 hybrid_clust hydroxylamine reductase. This model represents a family of proteins containing an unusual 4Fe-2S-2O hydrid cluster. Earlier reports had proposed a 6Fe-6S prismane cluster. This subfamily is heterogeneous with respect to the presence or absence of a region of about 100 amino acids not far from the N-terminus of the protein. Members have been described as monomeric. The function is unknown, but is almost certain to involve oxidoreductase enzymatic activity. Members are found in E. coli and other bacteria, in Archaea, and in several parasitic eukaryotes: Giardia intestinalis, Trichomonas vaginalis, and Entamoeba histolytica.
Probab=28.56 E-value=69 Score=27.81 Aligned_cols=26 Identities=12% Similarity=0.188 Sum_probs=20.8
Q ss_pred HHhhccCCCCCCCHHHHHHHHHHcCC
Q psy1381 25 QDFAKDFTAEFFDANHWADILASSGA 50 (102)
Q Consensus 25 ~~~a~~F~p~~fDp~~Wa~l~k~aGa 50 (102)
+-++.+.+-.+||++.|++++.++|.
T Consensus 63 ~aLfaTlTNvNFd~~~l~~lv~e~g~ 88 (522)
T TIGR01703 63 RALFSTLTNVNFDEDRIVEYIEDAIK 88 (522)
T ss_pred HHHHHhccccCCCHHHHHHHHHHHHH
Confidence 35567778888999999999887773
No 202
>cd07952 ED_3B_like Uncharacterized class III extradiol dioxygenases. This subfamily is composed of proteins of unknown function with similarity to the catalytic B subunit of class III extradiol dioxygenases. Class III extradiol dioxygenases use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. They play key roles in the degradation of aromatic compounds.
Probab=28.46 E-value=1e+02 Score=23.46 Aligned_cols=55 Identities=13% Similarity=0.177 Sum_probs=37.1
Q ss_pred HHcCCCeEEEeeeecCC----cccCCCCC-CCCccc------ccCCCCCchHHHHHHHHhhcCCCC
Q psy1381 46 ASSGAKYVVLTSKHHEG----YTLWPSKY-AFSWNS------MDIGPKRDLVDYTFGNWFTGGSPG 100 (102)
Q Consensus 46 k~aGakyvvlTtKHHdG----F~lW~S~~-~~~~~s------~~~~p~rDiv~el~~a~~~~Gl~~ 100 (102)
+...-+-+|+.+-||.+ ++++.++. ...|.. .......++..+|.+.+++.|++.
T Consensus 32 ~~~~Pd~IvvispH~~~~~~~~~i~~~~~~~g~~~~p~~~~~~~~~~d~ela~~l~~~~~~~g~~~ 97 (256)
T cd07952 32 KNDDPDVLVVITPHGIRLSGHVAVILTEYLEGTLRTNKVLIRSKYPNDRELANEIYKSARADGIPV 97 (256)
T ss_pred HhcCCCEEEEECCCcccccCceEEeecCeeeeecccCCCceEEecCCCHHHHHHHHHHHHHcCCce
Confidence 33457888999999864 78887743 111211 233346789999999999999874
No 203
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=28.27 E-value=1.2e+02 Score=24.50 Aligned_cols=62 Identities=13% Similarity=-0.004 Sum_probs=37.2
Q ss_pred HHHHHHHHHHcCCCeEEEeeeecCCcccCCCCC-C----CCccc------c-cCCCCCchHHHHHHHHhhcCCC
Q psy1381 38 ANHWADILASSGAKYVVLTSKHHEGYTLWPSKY-A----FSWNS------M-DIGPKRDLVDYTFGNWFTGGSP 99 (102)
Q Consensus 38 p~~Wa~l~k~aGakyvvlTtKHHdGF~lW~S~~-~----~~~~s------~-~~~p~rDiv~el~~a~~~~Gl~ 99 (102)
+.+.+++|+++||.-|=|-+.--|-+..=+... . ..|+. . ...-..+=..+|.+.|++.||+
T Consensus 18 A~~lI~~A~~aGadaVKfQt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~L~~~~~~~Gi~ 91 (329)
T TIGR03569 18 AKKLVDAAAEAGADAVKFQTFKAEDLVSKNAPKAEYQKINTGAEESQLEMLKKLELSEEDHRELKEYCESKGIE 91 (329)
T ss_pred HHHHHHHHHHhCCCEEEeeeCCHHHhhCcccccccccccCCcCCCcHHHHHHHhCCCHHHHHHHHHHHHHhCCc
Confidence 578999999999998877664333321111100 0 00110 0 1122456688999999999996
No 204
>PLN02591 tryptophan synthase
Probab=28.24 E-value=97 Score=24.08 Aligned_cols=42 Identities=7% Similarity=0.054 Sum_probs=31.7
Q ss_pred CCCHHHHHHHHHHcCCCeEEEeeeecCCcccCCCCCCCCcccccCCCCCchHHHHHHHHhhcCCC
Q psy1381 35 FFDANHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVDYTFGNWFTGGSP 99 (102)
Q Consensus 35 ~fDp~~Wa~l~k~aGakyvvlTtKHHdGF~lW~S~~~~~~~s~~~~p~rDiv~el~~a~~~~Gl~ 99 (102)
++..+..++.++++|+.-+++. +.. -+=..++.+.|+++||.
T Consensus 92 ~~G~~~F~~~~~~aGv~Gviip------------DLP-----------~ee~~~~~~~~~~~gl~ 133 (250)
T PLN02591 92 KRGIDKFMATIKEAGVHGLVVP------------DLP-----------LEETEALRAEAAKNGIE 133 (250)
T ss_pred HhHHHHHHHHHHHcCCCEEEeC------------CCC-----------HHHHHHHHHHHHHcCCe
Confidence 3455899999999999999987 111 14467888888888875
No 205
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=28.12 E-value=77 Score=23.55 Aligned_cols=27 Identities=19% Similarity=0.107 Sum_probs=23.2
Q ss_pred CCHHHHHHHHHHcCCCeEEEeeeecCC
Q psy1381 36 FDANHWADILASSGAKYVVLTSKHHEG 62 (102)
Q Consensus 36 fDp~~Wa~l~k~aGakyvvlTtKHHdG 62 (102)
-||.++++.+.++|++.++++--.-+|
T Consensus 27 ~d~~~~a~~~~~~G~~~i~i~d~~~~~ 53 (243)
T cd04731 27 GDPVELAKRYNEQGADELVFLDITASS 53 (243)
T ss_pred CCHHHHHHHHHHCCCCEEEEEcCCccc
Confidence 499999999999999999998766544
No 206
>PF12860 PAS_7: PAS fold
Probab=28.03 E-value=54 Score=20.96 Aligned_cols=39 Identities=15% Similarity=0.193 Sum_probs=24.4
Q ss_pred CCcccCCCCCC-CCccccc----------CCCCCchHHHHHHHHhhcCCCC
Q psy1381 61 EGYTLWPSKYA-FSWNSMD----------IGPKRDLVDYTFGNWFTGGSPG 100 (102)
Q Consensus 61 dGF~lW~S~~~-~~~~s~~----------~~p~rDiv~el~~a~~~~Gl~~ 100 (102)
+|+|+||++-. -.||..- ..++.. +.++++.+.+.|..+
T Consensus 6 ~Gv~v~D~~~rl~~~N~~~~~l~~~~~~~~~~G~~-~~~l~~~~~~~g~~~ 55 (115)
T PF12860_consen 6 QGVAVFDSDGRLVFWNQRFRELFGLPPEMLRPGAS-FRDLLRRLAERGEFP 55 (115)
T ss_pred ceEEEEcCCCeEEeEcHHHHHHhCCCHHHhcCCCC-HHHHHHHHHHcCCCC
Confidence 69999998864 1233221 112344 678888888888765
No 207
>PRK05290 hybrid cluster protein; Provisional
Probab=27.99 E-value=77 Score=27.74 Aligned_cols=28 Identities=14% Similarity=0.115 Sum_probs=22.6
Q ss_pred ChHHhhccCCCCCCCHHHHHHHHHHcCC
Q psy1381 23 TYQDFAKDFTAEFFDANHWADILASSGA 50 (102)
Q Consensus 23 ~Y~~~a~~F~p~~fDp~~Wa~l~k~aGa 50 (102)
-++-+..+.+-.+||++.|++++.++|.
T Consensus 62 i~eaLFaTlTNvnFD~~~l~~li~e~g~ 89 (546)
T PRK05290 62 VPEALFTTLTNVNFDDERIVGYIKEAIA 89 (546)
T ss_pred HHHHHHHhccccCCCHHHHHHHHHHHHH
Confidence 3446677888889999999999888774
No 208
>PLN02428 lipoic acid synthase
Probab=27.97 E-value=71 Score=26.23 Aligned_cols=26 Identities=42% Similarity=0.436 Sum_probs=20.2
Q ss_pred CCCCCH---HHHHHHHHHcCCCeEEEeee
Q psy1381 33 AEFFDA---NHWADILASSGAKYVVLTSK 58 (102)
Q Consensus 33 p~~fDp---~~Wa~l~k~aGakyvvlTtK 58 (102)
|...|+ .+-++.+++.|.+++|||+-
T Consensus 127 p~~~d~~Ep~~vA~~v~~~Glk~vvltSg 155 (349)
T PLN02428 127 PPPPDPDEPENVAEAIASWGVDYVVLTSV 155 (349)
T ss_pred CCCCChhhHHHHHHHHHHcCCCEEEEEEc
Confidence 445544 47888888999999999976
No 209
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=27.87 E-value=1.7e+02 Score=26.99 Aligned_cols=61 Identities=10% Similarity=-0.074 Sum_probs=37.3
Q ss_pred HHHHHHHHHHcCCCeEEEeeeecC-CcccCCCCCCCCcccccCCC-CCchHHHHHHHHhhcCCC
Q psy1381 38 ANHWADILASSGAKYVVLTSKHHE-GYTLWPSKYAFSWNSMDIGP-KRDLVDYTFGNWFTGGSP 99 (102)
Q Consensus 38 p~~Wa~l~k~aGakyvvlTtKHHd-GF~lW~S~~~~~~~s~~~~p-~rDiv~el~~a~~~~Gl~ 99 (102)
..+.++-++++|...|.++-=... .-..|--.+. +|..++..- ..+=+++|+++|+++||-
T Consensus 18 ~~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~-D~~~idp~lGt~edf~~Lv~aah~~Gm~ 80 (825)
T TIGR02401 18 AAALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVV-DHSEINPELGGEEGLRRLSEAARARGLG 80 (825)
T ss_pred HHHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCC-CCCCcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 456677789999999988754321 0011222222 233333222 467799999999999983
No 210
>KOG2781|consensus
Probab=27.86 E-value=45 Score=26.90 Aligned_cols=24 Identities=8% Similarity=-0.003 Sum_probs=17.9
Q ss_pred cccCCCCCchHHHHHHHHhhcCCC
Q psy1381 76 SMDIGPKRDLVDYTFGNWFTGGSP 99 (102)
Q Consensus 76 s~~~~p~rDiv~el~~a~~~~Gl~ 99 (102)
+....-+.=+|++|+++||++|+.
T Consensus 111 aqr~nRG~~~~~~lv~a~ra~~~T 134 (290)
T KOG2781|consen 111 AQRLNRGNYVVGELVDAARANGVT 134 (290)
T ss_pred hhhhcccceeHHHHHHHHHHCCCc
Confidence 333333567899999999999864
No 211
>TIGR02651 RNase_Z ribonuclease Z. Processing of the 3-prime end of tRNA precursors may be the result of endonuclease or exonuclease activity, and differs in different species. Member of this family are ribonuclease Z, a tRNA 3-prime endonuclease that processes tRNAs to prepare for addition of CCA. In species where all tRNA sequences already have the CCA tail, such as E. coli, the need for such an enzyme is unclear. Protein similar to the E. coli enzyme, matched by TIGR02649, are designated ribonuclease BN.
Probab=27.80 E-value=76 Score=23.96 Aligned_cols=23 Identities=26% Similarity=0.264 Sum_probs=20.7
Q ss_pred CCCCHHHHHHHHHHcCCCeEEEe
Q psy1381 34 EFFDANHWADILASSGAKYVVLT 56 (102)
Q Consensus 34 ~~fDp~~Wa~l~k~aGakyvvlT 56 (102)
....+++=+++++++|+|.+|||
T Consensus 243 ~H~t~~~a~~~~~~~~~k~lvlt 265 (299)
T TIGR02651 243 GHSTAAQAAEIAKEANVKRLILT 265 (299)
T ss_pred CCCCHHHHHHHHHHcCCCEEEEE
Confidence 46788999999999999999996
No 212
>TIGR02649 true_RNase_BN ribonuclease BN. Members of this protein family are ribonuclease BN of Escherichia coli K-12 and closely related proteins believed to be equivalent in function. Note that E. coli appears to lack RNase Z per se, and this protein of E. coli appears orthologous to (but not functionally equivalent to) RNase Z of Bacillus subtilis and various other species. Meanwhile, the yihY gene product of E. coli previously was incorrectly identified as RNase BN.
Probab=27.63 E-value=76 Score=24.39 Aligned_cols=26 Identities=15% Similarity=0.231 Sum_probs=22.3
Q ss_pred CCCCHHHHHHHHHHcCCCeEEEeeeecC
Q psy1381 34 EFFDANHWADILASSGAKYVVLTSKHHE 61 (102)
Q Consensus 34 ~~fDp~~Wa~l~k~aGakyvvlTtKHHd 61 (102)
-.-.+++-+++++++|+|.+||| |+.
T Consensus 245 ~H~t~~~a~~~a~~~~~k~lvL~--H~s 270 (303)
T TIGR02649 245 GHSSTRQAATLAREAGVGKLIIT--HVS 270 (303)
T ss_pred CCCCHHHHHHHHHHcCCCEEEEE--Eec
Confidence 47778999999999999999987 553
No 213
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=27.56 E-value=72 Score=25.52 Aligned_cols=54 Identities=7% Similarity=-0.127 Sum_probs=34.6
Q ss_pred HHHHHHcCCCeEEEeeeecCCcccCCCCCCCCcccccCCC----CCchHHHHHHHHhhc
Q psy1381 42 ADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGP----KRDLVDYTFGNWFTG 96 (102)
Q Consensus 42 a~l~k~aGakyvvlTtKHHdGF~lW~S~~~~~~~s~~~~p----~rDiv~el~~a~~~~ 96 (102)
|+.+++||+..|=|-+-|.--.+-|=|..++. .+-..|. +..++.|++++.|++
T Consensus 150 A~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~-R~D~yGGslenR~r~~~eii~~vr~~ 207 (353)
T cd04735 150 TRRAIEAGFDGVEIHGANGYLIQQFFSPHSNR-RTDEWGGSLENRMRFPLAVVKAVQEV 207 (353)
T ss_pred HHHHHHcCCCEEEEccccchHHHHhcCCccCC-CCcccCCcHHHHHHHHHHHHHHHHHH
Confidence 45677899999999888844444444555421 1222333 357888888888875
No 214
>PRK10426 alpha-glucosidase; Provisional
Probab=27.45 E-value=62 Score=28.40 Aligned_cols=30 Identities=10% Similarity=0.236 Sum_probs=25.1
Q ss_pred cCCCCCC-CHHHHHHHHHHcCCCeEEEeeee
Q psy1381 30 DFTAEFF-DANHWADILASSGAKYVVLTSKH 59 (102)
Q Consensus 30 ~F~p~~f-Dp~~Wa~l~k~aGakyvvlTtKH 59 (102)
+|++++| ||++.++.+++.|.|.++.+--|
T Consensus 262 ~~d~~~FPdp~~mi~~L~~~G~k~v~~i~P~ 292 (635)
T PRK10426 262 KWDSERYPQLDSRIKQLNEEGIQFLGYINPY 292 (635)
T ss_pred eEChhhCCCHHHHHHHHHHCCCEEEEEEcCc
Confidence 4577766 89999999999999998887654
No 215
>PF02900 LigB: Catalytic LigB subunit of aromatic ring-opening dioxygenase; InterPro: IPR004183 Dioxygenases catalyse the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms. Cleavage of aromatic rings is one of the most important functions of dioxygenases, which play key roles in the degradation of aromatic compounds. The substrates of ring-cleavage dioxygenases can be classified into two groups according to the mode of scission of the aromatic ring. Intradiol enzymes (IPR000627 from INTERPRO) use a non-haem Fe(III) to cleave the aromatic ring between two hydroxyl groups (ortho-cleavage), whereas extradiol enzymes use a non-haem Fe(II) to cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon (meta-cleavage) [, ]. These two subfamilies differ in sequence, structural fold, iron ligands, and the orientation of second sphere active site amino acid residues. Extradiol dioxygenases are usually homo-multimeric, bind one atom of ferrous ion per subunit and have a subunit size of about 33 kDa. Extradiol dioxygenases can be divided into three classes. Class I and II enzymes (IPR000486 from INTERPRO) show sequence similarity, with the two-domain class II enzymes having evolved from a class I enzyme through gene duplication. Class III enzymes are different in sequence and structure, but they do share several common active-site characteristics with the class II enzymes, in particular the coordination sphere and the disposition of the putative catalytic base are very similar. Class III enzymes usually have two subunits, designated A and B. Enzymes that belong to the extradiol class III family include Protocatechuate 4,5-dioxygenase (4,5-PCD; LigAB) (1.13.11.8 from EC) []; and 2'-aminobiphenyl-2,3-diol 1,2-dioxygenase (CarBaBb) []. The crystal structure of dioxygenase LigAB revealed that the molecule is an alpha2beta2 tetramer. The active site contains a non-heme iron coordinated by His12, His61, Glu242, and a water molecule located in a deep cleft of the beta subunit, which is covered by the alpha subunit []. This entry represents the structural domain of subunit B.; GO: 0008198 ferrous iron binding, 0016491 oxidoreductase activity, 0006725 cellular aromatic compound metabolic process; PDB: 2PW6_A 1B4U_D 1BOU_B.
Probab=27.43 E-value=85 Score=23.77 Aligned_cols=61 Identities=10% Similarity=0.137 Sum_probs=36.6
Q ss_pred HHHHHHHHHcCCCeEEEeeeecCC---------cccCCCCC---CCCcc-------cccC--CCCCchHHHHHHHHhhcC
Q psy1381 39 NHWADILASSGAKYVVLTSKHHEG---------YTLWPSKY---AFSWN-------SMDI--GPKRDLVDYTFGNWFTGG 97 (102)
Q Consensus 39 ~~Wa~l~k~aGakyvvlTtKHHdG---------F~lW~S~~---~~~~~-------s~~~--~p~rDiv~el~~a~~~~G 97 (102)
+++.+.+++..-+.+|+.+-||.- |++--++. ..++. ..+. ....++...+++.++++|
T Consensus 31 ~~~~~~l~~~~pd~ivvis~h~~~~f~~~~~p~~~v~~~~~~~~~~d~~gfp~~~~~~~~~~~g~~~la~~i~~~l~~~g 110 (272)
T PF02900_consen 31 QELGRRLREAKPDVIVVISPHWFTNFFEDNMPAFAVGSGEEPEGIYDFYGFPPELYEIKYPAPGDPELAERIAEHLRKAG 110 (272)
T ss_dssp HHHHHHCHSTS-SEEEEEEEEECCS--TTCEECBEEE-SSEE-B-BS-----SSSBSSS--EEB-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCEEEEEeCCcchhhcccCCccEEEecCCCcccccccccccccccccCCCCCCCHHHHHHHHHHHHhcC
Confidence 456677777889999999999964 22222321 11211 1111 125699999999999999
Q ss_pred CC
Q psy1381 98 SP 99 (102)
Q Consensus 98 l~ 99 (102)
++
T Consensus 111 ~~ 112 (272)
T PF02900_consen 111 FD 112 (272)
T ss_dssp S-
T ss_pred CC
Confidence 87
No 216
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=27.43 E-value=92 Score=23.54 Aligned_cols=60 Identities=15% Similarity=0.133 Sum_probs=43.2
Q ss_pred HHHHHHHHHcCCCeEEEeeeecCCcccCCCCCCCCcccccCCCCCchHHHHHHHHhhcCCCCC
Q psy1381 39 NHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVDYTFGNWFTGGSPGK 101 (102)
Q Consensus 39 ~~Wa~l~k~aGakyvvlTtKHHdGF~lW~S~~~~~~~s~~~~p~rDiv~el~~a~~~~Gl~~~ 101 (102)
.+|++-++++|++-+|+.-.-+.=..-|-.+..-+|-. ..++=.-+.|-+|+++-+++.+
T Consensus 52 ~~W~~e~k~~gi~v~vvSNn~e~RV~~~~~~l~v~fi~---~A~KP~~~~fr~Al~~m~l~~~ 111 (175)
T COG2179 52 RAWLAELKEAGIKVVVVSNNKESRVARAAEKLGVPFIY---RAKKPFGRAFRRALKEMNLPPE 111 (175)
T ss_pred HHHHHHHHhcCCEEEEEeCCCHHHHHhhhhhcCCceee---cccCccHHHHHHHHHHcCCChh
Confidence 79999999999999999887777666666665522211 2244455677888888888754
No 217
>PRK07945 hypothetical protein; Provisional
Probab=27.26 E-value=1e+02 Score=24.67 Aligned_cols=30 Identities=23% Similarity=0.265 Sum_probs=24.9
Q ss_pred CCCCCCCHHHHHHHHHHcCCCeEEEeeeecC
Q psy1381 31 FTAEFFDANHWADILASSGAKYVVLTSKHHE 61 (102)
Q Consensus 31 F~p~~fDp~~Wa~l~k~aGakyvvlTtKHHd 61 (102)
|.-..-.+++.++.|.+.|.++++|| -|-+
T Consensus 106 ~Sdg~~~~ee~v~~Ai~~Gl~~i~~T-DH~p 135 (335)
T PRK07945 106 WSDGGSPIEEMARTAAALGHEYCALT-DHSP 135 (335)
T ss_pred CCCCCCCHHHHHHHHHHCCCCEEEEe-CCCC
Confidence 44456679999999999999999999 6655
No 218
>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase. In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.
Probab=27.04 E-value=1.7e+02 Score=24.70 Aligned_cols=47 Identities=9% Similarity=-0.016 Sum_probs=30.7
Q ss_pred CCHHHHHHHHHHcCCCeEEEeeeecCCcccCCCCCCCCcccccCCC--CCchHHHHHHHHhhcCCC
Q psy1381 36 FDANHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGP--KRDLVDYTFGNWFTGGSP 99 (102)
Q Consensus 36 fDp~~Wa~l~k~aGakyvvlTtKHHdGF~lW~S~~~~~~~s~~~~p--~rDiv~el~~a~~~~Gl~ 99 (102)
.||++..+++.+.+.+-++++. .+ ...++ ..|-+.++++-|+++||+
T Consensus 189 iD~e~Le~aIt~~~~kai~~Vv------------~T-----p~t~~~g~~ddL~eIa~la~k~gI~ 237 (444)
T TIGR03531 189 TDVEDIERAIEEIGPDNILCVL------------ST-----TSCFAPRSPDDIEEIAKICANYDIP 237 (444)
T ss_pred cCHHHHHHHHHhccCCCEEEEE------------Ec-----CCcCCCcchhCHHHHHHHHHHcCCE
Confidence 4888888888875434333332 11 01111 368899999999999986
No 219
>PRK09257 aromatic amino acid aminotransferase; Provisional
Probab=26.98 E-value=1.8e+02 Score=22.89 Aligned_cols=50 Identities=18% Similarity=0.058 Sum_probs=31.2
Q ss_pred CCCHHHHHHHHHHcCC-CeEEEeeeecCCcccCCCCCCCCcccccCCCCCchHHHHHHHHhhcCC
Q psy1381 35 FFDANHWADILASSGA-KYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVDYTFGNWFTGGS 98 (102)
Q Consensus 35 ~fDp~~Wa~l~k~aGa-kyvvlTtKHHdGF~lW~S~~~~~~~s~~~~p~rDiv~el~~a~~~~Gl 98 (102)
.+|+++..+++++... +-++++..+|. ||-. ...++-..+|++.|+++|+
T Consensus 156 ~~d~~~l~~~~~~~~~~~~~~i~~~p~N-----PTG~---------~~s~~~~~~l~~~a~~~~~ 206 (396)
T PRK09257 156 GLDFDAMLADLSQAPAGDVVLLHGCCHN-----PTGA---------DLTPEQWDELAELLKERGL 206 (396)
T ss_pred ccCHHHHHHHHHhCCCCCEEEEeCCCCC-----CCCC---------CCCHHHHHHHHHHHHhCCc
Confidence 4677887777765444 34444454443 1111 1247888999999999886
No 220
>PRK00055 ribonuclease Z; Reviewed
Probab=26.96 E-value=93 Score=22.75 Aligned_cols=24 Identities=29% Similarity=0.317 Sum_probs=21.4
Q ss_pred CCCCCHHHHHHHHHHcCCCeEEEe
Q psy1381 33 AEFFDANHWADILASSGAKYVVLT 56 (102)
Q Consensus 33 p~~fDp~~Wa~l~k~aGakyvvlT 56 (102)
.....+++=+++++++|+|.+|+|
T Consensus 208 ~~H~~~~~a~~~~~~~~~~~~vl~ 231 (270)
T PRK00055 208 YGHSTARQAAEIAKEAGVKRLILT 231 (270)
T ss_pred cCCCCHHHHHHHHHHcCCCEEEEE
Confidence 357889999999999999999987
No 221
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=26.93 E-value=38 Score=26.69 Aligned_cols=36 Identities=17% Similarity=0.299 Sum_probs=26.4
Q ss_pred CCCCCCCHHHHH----HHHHHcCCCeEEEeeeecCCcccC
Q psy1381 31 FTAEFFDANHWA----DILASSGAKYVVLTSKHHEGYTLW 66 (102)
Q Consensus 31 F~p~~fDp~~Wa----~l~k~aGakyvvlTtKHHdGF~lW 66 (102)
.+|......+|+ +++++.||+-+..+.+|||-..=+
T Consensus 141 ltp~~~~~~~~~~~~~~~~~~~ga~~v~~~~eeHD~~~a~ 180 (279)
T COG0287 141 LTPSEGTEKEWVEEVKRLWEALGARLVEMDAEEHDRVMAA 180 (279)
T ss_pred EcCCCCCCHHHHHHHHHHHHHcCCEEEEcChHHHhHHHHH
Confidence 366666555665 456789999999999999965433
No 222
>PF10017 Methyltransf_33: Histidine-specific methyltransferase, SAM-dependent; InterPro: IPR019257 This domain is found in methyltransferases and various hypothetical proteins.
Probab=26.87 E-value=1e+02 Score=21.19 Aligned_cols=28 Identities=4% Similarity=0.057 Sum_probs=22.1
Q ss_pred hccCCCCCCCHHHHHHHHHHcCCCeEEE
Q psy1381 28 AKDFTAEFFDANHWADILASSGAKYVVL 55 (102)
Q Consensus 28 a~~F~p~~fDp~~Wa~l~k~aGakyvvl 55 (102)
...+..-+|+|++...++.+||.+-+-.
T Consensus 88 I~~e~S~Ky~~~~~~~l~~~aGl~~~~~ 115 (127)
T PF10017_consen 88 IHTENSYKYSPEEFEALAEQAGLEVEKR 115 (127)
T ss_pred EEEEEeeCcCHHHHHHHHHHCCCeeEEE
Confidence 3455666999999999999999875543
No 223
>PF04909 Amidohydro_2: Amidohydrolase; InterPro: IPR006992 These proteins are related to the metal-dependent hydrolase superfamily []. The family includes 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase which converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). ACMS can be converted non-enzymatically to quinolate, a potent endogenous excitoxin of neuronal cells which is implicated in the pathogenesis of various neurodegenerative disorders. In the presence of AMCSD, ACMS is converted to AMS, a benign catabolite. 2-amino-3-(3-oxoprop-2-enyl)-but-2-enedioate = 2-aminomuconate semialdehyde + CO2. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2QPX_A 4D8L_A 3K4W_I 3IRS_B 4DZI_B 3S4T_G 2GWG_B 3IJ6_A 2DVX_C 2DVT_C ....
Probab=26.84 E-value=70 Score=23.01 Aligned_cols=44 Identities=20% Similarity=0.117 Sum_probs=25.5
Q ss_pred HHHHHHHHHcCCCeEEEeeeecCCcccCCCCCCCCcccccCCCCCchH-HHHHHHHhhcCCC
Q psy1381 39 NHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLV-DYTFGNWFTGGSP 99 (102)
Q Consensus 39 ~~Wa~l~k~aGakyvvlTtKHHdGF~lW~S~~~~~~~s~~~~p~rDiv-~el~~a~~~~Gl~ 99 (102)
++..+.+.+.|++-|-+...++.+ .+..+.+ .++.+.|+++|+|
T Consensus 88 ~~l~~~~~~~g~~Gv~l~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~p 132 (273)
T PF04909_consen 88 EELERALQELGFRGVKLHPDLGGF-----------------DPDDPRLDDPIFEAAEELGLP 132 (273)
T ss_dssp HHHHHHHHTTTESEEEEESSETTC-----------------CTTSGHCHHHHHHHHHHHT-E
T ss_pred HHHHHhccccceeeeEecCCCCcc-----------------ccccHHHHHHHHHHHHhhccc
Confidence 344444558888877666544321 0111122 6999999999987
No 224
>PRK09248 putative hydrolase; Validated
Probab=26.79 E-value=76 Score=23.74 Aligned_cols=26 Identities=19% Similarity=0.206 Sum_probs=22.0
Q ss_pred CCCHHHHHHHHHHcCCCeEEEeeeecC
Q psy1381 35 FFDANHWADILASSGAKYVVLTSKHHE 61 (102)
Q Consensus 35 ~fDp~~Wa~l~k~aGakyvvlTtKHHd 61 (102)
.-.+++.++.|++.|...++|| -|..
T Consensus 18 ~~~~~e~v~~A~~~G~~~i~iT-dH~~ 43 (246)
T PRK09248 18 YSTLHENAAEAKQKGLKLFAIT-DHGP 43 (246)
T ss_pred CCCHHHHHHHHHHCCCCEEEEC-CCCC
Confidence 3469999999999999999999 4543
No 225
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=26.72 E-value=83 Score=20.50 Aligned_cols=33 Identities=15% Similarity=0.146 Sum_probs=25.7
Q ss_pred CCCCCCHHHHHHHHHHcCCCeEEEeeeecCCcc
Q psy1381 32 TAEFFDANHWADILASSGAKYVVLTSKHHEGYT 64 (102)
Q Consensus 32 ~p~~fDp~~Wa~l~k~aGakyvvlTtKHHdGF~ 64 (102)
+.+.-+.-++++.+++.|++-+++|..+..-++
T Consensus 57 sG~t~~~~~~~~~a~~~g~~vi~iT~~~~s~la 89 (128)
T cd05014 57 SGETDELLNLLPHLKRRGAPIIAITGNPNSTLA 89 (128)
T ss_pred CCCCHHHHHHHHHHHHCCCeEEEEeCCCCCchh
Confidence 344556689999999999999999987765443
No 226
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=26.52 E-value=77 Score=23.60 Aligned_cols=17 Identities=18% Similarity=0.026 Sum_probs=14.4
Q ss_pred HHHHHHHHHcCCCeEEE
Q psy1381 39 NHWADILASSGAKYVVL 55 (102)
Q Consensus 39 ~~Wa~l~k~aGakyvvl 55 (102)
.+.+++|++.|+++|++
T Consensus 87 ~~~i~~A~~lGa~~vv~ 103 (273)
T smart00518 87 IDEIKRCEELGIKALVF 103 (273)
T ss_pred HHHHHHHHHcCCCEEEE
Confidence 34778999999999886
No 227
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=26.33 E-value=1.1e+02 Score=25.51 Aligned_cols=56 Identities=16% Similarity=0.037 Sum_probs=35.9
Q ss_pred CCHHHHHHHHHHcCCCeEEEeeeecCCcccCCCCCCCCcccccCCCCCchHHHHHHHHhhcCCC
Q psy1381 36 FDANHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVDYTFGNWFTGGSP 99 (102)
Q Consensus 36 fDp~~Wa~l~k~aGakyvvlTtKHHdGF~lW~S~~~~~~~s~~~~p~rDiv~el~~a~~~~Gl~ 99 (102)
.++++ ++.+.++||..+.+ .-|-.+.|. |..... ...|.-+.+.+++++|++.|+|
T Consensus 274 ~t~~~-a~~l~~aGad~i~v-g~g~G~~~~--t~~~~~----~g~p~~~~i~~~~~~~~~~~vp 329 (450)
T TIGR01302 274 ATAEQ-AKALIDAGADGLRV-GIGPGSICT--TRIVAG----VGVPQITAVYDVAEYAAQSGIP 329 (450)
T ss_pred CCHHH-HHHHHHhCCCEEEE-CCCCCcCCc--cceecC----CCccHHHHHHHHHHHHhhcCCe
Confidence 34444 66677899999866 346666663 222111 1224568899999999988887
No 228
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=26.16 E-value=2.2e+02 Score=19.86 Aligned_cols=25 Identities=8% Similarity=0.185 Sum_probs=21.0
Q ss_pred CCCCCCHHHHHHHHHHcCCCeEEEe
Q psy1381 32 TAEFFDANHWADILASSGAKYVVLT 56 (102)
Q Consensus 32 ~p~~fDp~~Wa~l~k~aGakyvvlT 56 (102)
-...--|++.++++++-++..|.+.
T Consensus 37 LG~~vp~e~i~~~a~~~~~d~V~lS 61 (137)
T PRK02261 37 LGVMTSQEEFIDAAIETDADAILVS 61 (137)
T ss_pred CCCCCCHHHHHHHHHHcCCCEEEEc
Confidence 3456678999999999999999884
No 229
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=26.11 E-value=1.5e+02 Score=23.59 Aligned_cols=59 Identities=10% Similarity=-0.057 Sum_probs=34.4
Q ss_pred CCCCCCCHHHHHHHHHHcCCCeEEEeeeecCCcccCCCCCCCCcccccCCCCCchHHHHHHHHhhcCCC
Q psy1381 31 FTAEFFDANHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVDYTFGNWFTGGSP 99 (102)
Q Consensus 31 F~p~~fDp~~Wa~l~k~aGakyvvlTtKHHdGF~lW~S~~~~~~~s~~~~p~rDiv~el~~a~~~~Gl~ 99 (102)
-+|+.+++ +.+++++++|++.+-+-...-+ .+. ...+..+-..+-+.+-++.++++|++
T Consensus 92 ~~p~~~t~-e~l~~l~~~G~~rvsiGvqS~~------d~~---L~~l~R~~~~~~~~~ai~~l~~~g~~ 150 (374)
T PRK05799 92 GNPGTFTE-EKLKILKSMGVNRLSIGLQAWQ------NSL---LKYLGRIHTFEEFLENYKLARKLGFN 150 (374)
T ss_pred eCCCcCCH-HHHHHHHHcCCCEEEEECccCC------HHH---HHHcCCCCCHHHHHHHHHHHHHcCCC
Confidence 46777774 6888999999988877553222 111 11222222344455667777887764
No 230
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=26.00 E-value=1.8e+02 Score=22.68 Aligned_cols=59 Identities=10% Similarity=0.067 Sum_probs=42.6
Q ss_pred ccCCCC-CCCHHHHHHHHHHcCCCeEEEeeeecCCcccCCCCCCCCcccccC--CCCCchHHHHHHHHhhcCCC
Q psy1381 29 KDFTAE-FFDANHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDI--GPKRDLVDYTFGNWFTGGSP 99 (102)
Q Consensus 29 ~~F~p~-~fDp~~Wa~l~k~aGakyvvlTtKHHdGF~lW~S~~~~~~~s~~~--~p~rDiv~el~~a~~~~Gl~ 99 (102)
..|.|- ..||.+.++.+.++|++.+|+-+.-- |+ + .... .-.++.+.+|...++++|+-
T Consensus 114 ~~~~PLWg~d~~ell~e~~~~Gf~~~Iv~Vsa~-gL---------~--~~~lGr~i~~~~~e~l~~l~~~ygi~ 175 (223)
T COG2102 114 KVYAPLWGRDPEELLEEMVEAGFEAIIVAVSAE-GL---------D--ESWLGRRIDREFLEELKSLNRRYGIH 175 (223)
T ss_pred EEeecccCCCHHHHHHHHHHcCCeEEEEEEecc-CC---------C--hHHhCCccCHHHHHHHHHHHHhcCCC
Confidence 355554 88999999999999999988865321 21 1 1112 22478999999999999985
No 231
>PLN02721 threonine aldolase
Probab=26.00 E-value=1.8e+02 Score=22.00 Aligned_cols=50 Identities=10% Similarity=0.019 Sum_probs=29.7
Q ss_pred CCHHHHHHHHHHc------CCCeEEEeeeecCCcccCCCCCCCCcccccCCCCCchHHHHHHHHhhcCCC
Q psy1381 36 FDANHWADILASS------GAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVDYTFGNWFTGGSP 99 (102)
Q Consensus 36 fDp~~Wa~l~k~a------GakyvvlTtKHHdGF~lW~S~~~~~~~s~~~~p~rDiv~el~~a~~~~Gl~ 99 (102)
.|+++..+++.+. ..+-++++.-++. ..-.....+-+.+|++.|+++|+.
T Consensus 118 ~d~~~l~~~i~~~~~~~~~~~~~v~l~~~~~n--------------p~G~~~~~~~l~~l~~l~~~~g~~ 173 (353)
T PLN02721 118 MDLDAIEAAIRPKGDDHFPTTRLICLENTHAN--------------CGGRCLSVEYTDKVGELAKRHGLK 173 (353)
T ss_pred cCHHHHHHHHHhccCCCCCcceEEEEeccccc--------------cCCccccHHHHHHHHHHHHHcCCE
Confidence 6888888888754 3344444433321 000111345688999999998864
No 232
>COG2078 AMMECR1 Uncharacterized conserved protein [Function unknown]
Probab=25.78 E-value=57 Score=25.15 Aligned_cols=20 Identities=20% Similarity=0.373 Sum_probs=17.1
Q ss_pred CCchHHHHHHHHhhcCCCCC
Q psy1381 82 KRDLVDYTFGNWFTGGSPGK 101 (102)
Q Consensus 82 ~rDiv~el~~a~~~~Gl~~~ 101 (102)
+-|...-|..+|.|+|||+.
T Consensus 152 ~w~~eefL~~~c~KAGlp~~ 171 (203)
T COG2078 152 RWDVEEFLEHTCEKAGLPGD 171 (203)
T ss_pred CCCHHHHHHHHHHHcCCCcc
Confidence 45788889999999999984
No 233
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=25.58 E-value=89 Score=23.86 Aligned_cols=45 Identities=9% Similarity=0.085 Sum_probs=31.1
Q ss_pred CCCHHHHHHHHHHcCCCeEEEeeeecCCcccCCCCCCCCcccccCCCCCchHHHHHHHH
Q psy1381 35 FFDANHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVDYTFGNW 93 (102)
Q Consensus 35 ~fDp~~Wa~l~k~aGakyvvlTtKHHdGF~lW~S~~~~~~~s~~~~p~rDiv~el~~a~ 93 (102)
.-||.++|+.+.+.|++.+++|==.-+| ...++..++++++++.+
T Consensus 29 ~~dp~~~a~~~~~~g~~~l~i~Dl~~~~--------------~~~~~n~~~i~~i~~~~ 73 (258)
T PRK01033 29 IGDPINAVRIFNEKEVDELIVLDIDASK--------------RGSEPNYELIENLASEC 73 (258)
T ss_pred CCCHHHHHHHHHHcCCCEEEEEECCCCc--------------CCCcccHHHHHHHHHhC
Confidence 3499999999999999999998543221 12344556666666553
No 234
>PRK14705 glycogen branching enzyme; Provisional
Probab=25.50 E-value=2e+02 Score=27.74 Aligned_cols=59 Identities=15% Similarity=0.143 Sum_probs=36.7
Q ss_pred HHHHHHHHHcCCCeEEEeee--ecCCcccCCCCCCCCcccccCCC-CCchHHHHHHHHhhcCCC
Q psy1381 39 NHWADILASSGAKYVVLTSK--HHEGYTLWPSKYAFSWNSMDIGP-KRDLVDYTFGNWFTGGSP 99 (102)
Q Consensus 39 ~~Wa~l~k~aGakyvvlTtK--HHdGF~lW~S~~~~~~~s~~~~p-~rDiv~el~~a~~~~Gl~ 99 (102)
++-++-+|++|.+.|-|.-- |-.+ ..|--+.+ +|....... ..|=+++|+++|+++||-
T Consensus 769 ~~lldYlk~LGvt~IeLmPv~e~p~~-~swGY~~~-~y~ap~~ryGt~~dfk~lVd~~H~~GI~ 830 (1224)
T PRK14705 769 KELVDYVKWLGFTHVEFMPVAEHPFG-GSWGYQVT-SYFAPTSRFGHPDEFRFLVDSLHQAGIG 830 (1224)
T ss_pred HHHHHHHHHhCCCEEEECccccCCCC-CCCCCCcc-ccCCcCcccCCHHHHHHHHHHHHHCCCE
Confidence 45677899999999977654 4322 23433333 232332211 245689999999999983
No 235
>PRK04161 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=25.09 E-value=88 Score=25.78 Aligned_cols=66 Identities=12% Similarity=0.061 Sum_probs=41.2
Q ss_pred CChHHhhccCCCCCCCHHHHHHHHHHcCCCeEEEeeeecCCcccCCCCCCCCcccccCCCCCchHHHHHHHHhhcCCC
Q psy1381 22 FTYQDFAKDFTAEFFDANHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVDYTFGNWFTGGSP 99 (102)
Q Consensus 22 ~~Y~~~a~~F~p~~fDp~~Wa~l~k~aGakyvvlTtKHHdGF~lW~S~~~~~~~s~~~~p~rDiv~el~~a~~~~Gl~ 99 (102)
.+|+.+.+.--|...+ +.=++.+|++|+..+=|-. .|+.+-...-| ..+...|+.+.+.|+..|||
T Consensus 94 tGyD~~~~gRl~~ll~-~ws~~rike~GadavK~Ll-------yy~pD~~~ein----~~k~a~vervg~eC~a~dip 159 (329)
T PRK04161 94 TGYDATTTSRLPDCLV-EWSVKRLKEAGADAVKFLL-------YYDVDGDEEIN----DQKQAYIERIGSECTAEDIP 159 (329)
T ss_pred cCcccCCCCccccccc-hhhHHHHHHhCCCeEEEEE-------EECCCCCHHHH----HHHHHHHHHHHHHHHHCCCC
Confidence 3444444443333222 3447888999999987654 34443332111 12689999999999999998
No 236
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=25.09 E-value=1.8e+02 Score=21.29 Aligned_cols=39 Identities=18% Similarity=0.211 Sum_probs=24.5
Q ss_pred HHHHHHHcCCCeEEEeeeecCCcccCCCCCCCCcccccCCCCCchHHHHHHHHhhcC
Q psy1381 41 WADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVDYTFGNWFTGG 97 (102)
Q Consensus 41 Wa~l~k~aGakyvvlTtKHHdGF~lW~S~~~~~~~s~~~~p~rDiv~el~~a~~~~G 97 (102)
=++.++++|+.++++-..... .|....+.++++.+++.|
T Consensus 84 ~~~~a~~aGad~I~~~~~~~~------------------~p~~~~~~~~i~~~~~~g 122 (219)
T cd04729 84 EVDALAAAGADIIALDATDRP------------------RPDGETLAELIKRIHEEY 122 (219)
T ss_pred HHHHHHHcCCCEEEEeCCCCC------------------CCCCcCHHHHHHHHHHHh
Confidence 468899999996666331110 122246677888888777
No 237
>PF00586 AIRS: AIR synthase related protein, N-terminal domain; InterPro: IPR000728 This family includes Hydrogen expression/formation protein, HypE, which may be involved in the maturation of NifE hydrogenase; AIR synthase and FGAM synthase, which are involved in de novo purine biosynthesis; and selenide, water dikinase, an enzyme which synthesizes selenophosphate from selenide and ATP.; GO: 0003824 catalytic activity; PDB: 3VIU_A 2Z1T_A 2Z1U_A 3C9U_B 3C9S_A 3C9R_A 1VQV_A 3C9T_B 3M84_A 3QTY_A ....
Probab=24.99 E-value=29 Score=22.11 Aligned_cols=17 Identities=18% Similarity=0.139 Sum_probs=14.4
Q ss_pred CchHHHHHHHHhhcCCC
Q psy1381 83 RDLVDYTFGNWFTGGSP 99 (102)
Q Consensus 83 rDiv~el~~a~~~~Gl~ 99 (102)
.++++.+.++|++.|+|
T Consensus 74 ~~~~~Gi~~~~~~~g~~ 90 (96)
T PF00586_consen 74 KEIVKGIAEACREFGIP 90 (96)
T ss_dssp HHHHHHHHHHHHHHT-E
T ss_pred HHHHHHHHHHHHHhCCc
Confidence 68899999999999986
No 238
>PF08963 DUF1878: Protein of unknown function (DUF1878); InterPro: IPR015058 This family consist of hypothetical bacterial proteins. ; PDB: 1SED_B.
Probab=24.96 E-value=54 Score=23.14 Aligned_cols=63 Identities=13% Similarity=0.134 Sum_probs=29.7
Q ss_pred CCCCCCCHHHHHHHHHHcCCCeEEEeeeecCCcccCCCCCCCCcccccCCCCCchHHHHHHHHhhcCCC
Q psy1381 31 FTAEFFDANHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVDYTFGNWFTGGSP 99 (102)
Q Consensus 31 F~p~~fDp~~Wa~l~k~aGakyvvlTtKHHdGF~lW~S~~~~~~~s~~~~p~rDiv~el~~a~~~~Gl~ 99 (102)
.+.++=+.++..+++.+..-+|. ..--+||.+++.-.. .+ .....++-| |.|.++||.++||-
T Consensus 36 ~~Ltkeevee~~~lce~l~ee~~---~QKAeG~v~F~pLl~-~F-~~~L~~~L~-~~eti~Al~~Qgl~ 98 (113)
T PF08963_consen 36 KGLTKEEVEEFLRLCEELSEELE---EQKAEGFVIFDPLLA-QF-AGMLHEKLD-VHETIEALLRQGLF 98 (113)
T ss_dssp TT--HHHHHHHHHHHHHHHHHHH---HHHHTT----HHHHH-HH-HHHS-TTS--HHHHHHHHHHTT-S
T ss_pred cCCCHHHHHHHHHHHHHHHHHHH---HHHhcchhhHHHHHH-HH-HhhcCccCC-HHHHHHHHHHccCc
Confidence 34444455566666555444332 233467776665443 11 122333444 68999999999983
No 239
>PF07498 Rho_N: Rho termination factor, N-terminal domain; InterPro: IPR011112 The Rho termination factor disengages newly transcribed RNA from its DNA template at certain, specific transcripts. It is thought that two copies of Rho bind to RNA and that Rho functions as a hexamer of protomers []. This domain is found to the N terminus of the RNA binding domain (IPR011113 from INTERPRO).; GO: 0006353 transcription termination, DNA-dependent; PDB: 1A8V_B 1PVO_A 1PV4_D 3ICE_A 1XPU_C 1XPO_D 1XPR_F 2A8V_B 2HT1_B 1A63_A ....
Probab=24.94 E-value=63 Score=18.33 Aligned_cols=17 Identities=18% Similarity=-0.171 Sum_probs=13.6
Q ss_pred HHHHHHHHhhcCCCCCC
Q psy1381 86 VDYTFGNWFTGGSPGKS 102 (102)
Q Consensus 86 v~el~~a~~~~Gl~~~~ 102 (102)
+.||.+-|++.||++.+
T Consensus 7 ~~eL~~iAk~lgI~~~~ 23 (43)
T PF07498_consen 7 LSELREIAKELGIEGYS 23 (43)
T ss_dssp HHHHHHHHHCTT-TTGC
T ss_pred HHHHHHHHHHcCCCCCC
Confidence 67999999999998753
No 240
>cd07567 biotinidase_like biotinidase and vanins (class 4 nitrilases). These secondary amidases participate in vitamin recycling. Biotinidase (EC 3.5.1.12) has both a hydrolase and a transferase activity. It hydrolyzes free biocytin or small biotinyl-peptides produced during the proteolytic degradation of biotin-dependent carboxylases, to release free biotin (vitamin H), and it can transfer biotin to acceptor molecules such as histones. Biotinidase deficiency in humans is an autosomal recessive disorder characterized by neurological and cutaneous symptoms. This subgroup includes the three human vanins, vanin1-3. Vanins are ectoenzymes, Vanin-1, and -2 are membrane associated, vanin-3 is secreted. They are pantotheinases (EC 3.5.1.92, pantetheine hydrolase), which convert pantetheine, to pantothenic acid (vitamin B5) and cysteamine (2-aminoethanethiol, a potent anti-oxidant). They are potential targets for therapeutic intervention in inflammatory disorders. Vanin-1 deficient mice lacking
Probab=24.88 E-value=2.3e+02 Score=22.30 Aligned_cols=59 Identities=14% Similarity=0.080 Sum_probs=36.1
Q ss_pred HHHHHHHHcCCCeEEEeeeecCCcccCCCCCCC----------Ccccc---cCCCCCchHHHHHHHHhhcCC
Q psy1381 40 HWADILASSGAKYVVLTSKHHEGYTLWPSKYAF----------SWNSM---DIGPKRDLVDYTFGNWFTGGS 98 (102)
Q Consensus 40 ~Wa~l~k~aGakyvvlTtKHHdGF~lW~S~~~~----------~~~s~---~~~p~rDiv~el~~a~~~~Gl 98 (102)
+.++.+++.|+.-|||==----||++++..... +|... ......+.+..|.+.||++|+
T Consensus 31 ~~i~~A~~~gadLIVfPE~~ltGy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lAr~~~i 102 (299)
T cd07567 31 EIIKSAAKQGADIIVFPEDGLTGFIFTRFVIYPFLEDVPDPEVNWNPCLDPDRFDYTEVLQRLSCAARENSI 102 (299)
T ss_pred HHHHHHHHcCCCEEEccccccCCCCCCccccCchhcccccccccccccccccccCchHHHHHHHHHHHHhCe
Confidence 455556677999888866666788876533210 01000 001124688999999999886
No 241
>PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A []. The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A ....
Probab=24.88 E-value=65 Score=20.07 Aligned_cols=19 Identities=21% Similarity=0.219 Sum_probs=15.4
Q ss_pred HHHHHHHHHcCCCeEEEee
Q psy1381 39 NHWADILASSGAKYVVLTS 57 (102)
Q Consensus 39 ~~Wa~l~k~aGakyvvlTt 57 (102)
.+=+..++++||+-+|+..
T Consensus 47 ~~k~~~a~~~GA~gvIi~~ 65 (101)
T PF02225_consen 47 DDKVRNAQKAGAKGVIIYN 65 (101)
T ss_dssp HHHHHHHHHTTESEEEEE-
T ss_pred HHHHHHHHHcCCEEEEEEe
Confidence 4556888899999999998
No 242
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=24.88 E-value=65 Score=20.18 Aligned_cols=25 Identities=12% Similarity=0.009 Sum_probs=16.1
Q ss_pred cccCCCCCchHHHHHHHHhhcCCCC
Q psy1381 76 SMDIGPKRDLVDYTFGNWFTGGSPG 100 (102)
Q Consensus 76 s~~~~p~rDiv~el~~a~~~~Gl~~ 100 (102)
.++.+|..=|..-|.+||++.||..
T Consensus 10 ~vkvtp~~~l~~VL~eac~k~~l~~ 34 (65)
T PF11470_consen 10 KVKVTPNTTLNQVLEEACKKFGLDP 34 (65)
T ss_dssp EE---TTSBHHHHHHHHHHHTT--G
T ss_pred EEEECCCCCHHHHHHHHHHHcCCCc
Confidence 3456777777788899999999875
No 243
>cd06450 DOPA_deC_like DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.
Probab=24.85 E-value=2.8e+02 Score=20.86 Aligned_cols=17 Identities=6% Similarity=-0.435 Sum_probs=13.9
Q ss_pred CchHHHHHHHHhhcCCC
Q psy1381 83 RDLVDYTFGNWFTGGSP 99 (102)
Q Consensus 83 rDiv~el~~a~~~~Gl~ 99 (102)
.|-+.++++-|+++|+.
T Consensus 164 ~~~~~~i~~~~~~~~~~ 180 (345)
T cd06450 164 IDPLEEIADLAEKYDLW 180 (345)
T ss_pred CCCHHHHHHHHHHhCCe
Confidence 35589999999999874
No 244
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=24.85 E-value=97 Score=22.84 Aligned_cols=25 Identities=20% Similarity=0.191 Sum_probs=21.6
Q ss_pred CCCHHHHHHHHHHcCCCeEEEeeee
Q psy1381 35 FFDANHWADILASSGAKYVVLTSKH 59 (102)
Q Consensus 35 ~fDp~~Wa~l~k~aGakyvvlTtKH 59 (102)
..||.+.++.+.+.|++.+++|--.
T Consensus 29 ~~dp~~~a~~~~~~g~~~i~i~dl~ 53 (232)
T TIGR03572 29 IGDPVNAARIYNAKGADELIVLDID 53 (232)
T ss_pred CCCHHHHHHHHHHcCCCEEEEEeCC
Confidence 3499999999999999999997543
No 245
>cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like. This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=24.80 E-value=91 Score=21.62 Aligned_cols=21 Identities=33% Similarity=0.382 Sum_probs=17.3
Q ss_pred HHHHHHHHHcCCCeEEEeeee
Q psy1381 39 NHWADILASSGAKYVVLTSKH 59 (102)
Q Consensus 39 ~~Wa~l~k~aGakyvvlTtKH 59 (102)
.+=+..++++||+.+|+....
T Consensus 69 ~~K~~nA~~aGA~aviiyn~~ 89 (129)
T cd02124 69 ATKAANAAAKGAKYVLIYNNG 89 (129)
T ss_pred HHHHHHHHHcCCcEEEEEECC
Confidence 455888999999999998655
No 246
>COG0174 GlnA Glutamine synthetase [Amino acid transport and metabolism]
Probab=24.67 E-value=3.1e+02 Score=23.27 Aligned_cols=67 Identities=13% Similarity=0.040 Sum_probs=38.4
Q ss_pred CCCCCCHHH----HHHHHHHcCCCeEEEeeeecCCcccCCC-----------CCCCCcccccCCCCCchHHHHHHHHhhc
Q psy1381 32 TAEFFDANH----WADILASSGAKYVVLTSKHHEGYTLWPS-----------KYAFSWNSMDIGPKRDLVDYTFGNWFTG 96 (102)
Q Consensus 32 ~p~~fDp~~----Wa~l~k~aGakyvvlTtKHHdGF~lW~S-----------~~~~~~~s~~~~p~rDiv~el~~a~~~~ 96 (102)
+|...||.. -++.+++.|.+.+++ .-=.+ |-|.+. .....|...-..-..||.++++.+++++
T Consensus 101 ~p~~~dPR~vlkr~~~~l~~~G~~~~~~-g~E~E-FfLfd~~~~~~~~~~~~~~~~yf~~~~~~~~~~~~~di~~~l~~~ 178 (443)
T COG0174 101 TPYPRDPRSVLKRALARLKDEGLAPAVV-GPELE-FFLFDRDGRDPDGGRPADKGGYFDVAPLDEAEDFRRDIVEALEAA 178 (443)
T ss_pred CcCCCChHHHHHHHHHHHHhcCCcccee-eccee-EEEeecccCCcccCccCCCCcccCccccccHHHHHHHHHHHHHHC
Confidence 345668854 455667888865222 22222 444443 2221222222222579999999999999
Q ss_pred CCCC
Q psy1381 97 GSPG 100 (102)
Q Consensus 97 Gl~~ 100 (102)
|++-
T Consensus 179 Gi~i 182 (443)
T COG0174 179 GIEI 182 (443)
T ss_pred CCCc
Confidence 9974
No 247
>TIGR00097 HMP-P_kinase phosphomethylpyrimidine kinase. This model represents phosphomethylpyrimidine kinase, the ThiD protein of thiamine biosynthesis. The protein is commonly observed within operons containing other thiamine biosynthesis genes. Numerous examples are fusion proteins with other thiamine-biosynthetic domains. Saccaromyces has three recent paralogs, two of which are isofunctional and score above the trusted cutoff. The third shows a longer branch length in a phylogenetic tree and scores below the trusted cutoff, as do putative second copies in a number of species.
Probab=24.58 E-value=1.7e+02 Score=21.82 Aligned_cols=63 Identities=16% Similarity=0.121 Sum_probs=36.4
Q ss_pred CHHHHHHHHHHcCCCeEEEeeeecC---Cc-ccCCCCCCC-----CcccccCCCCCchHHHHHHHHhhcCCC
Q psy1381 37 DANHWADILASSGAKYVVLTSKHHE---GY-TLWPSKYAF-----SWNSMDIGPKRDLVDYTFGNWFTGGSP 99 (102)
Q Consensus 37 Dp~~Wa~l~k~aGakyvvlTtKHHd---GF-~lW~S~~~~-----~~~s~~~~p~rDiv~el~~a~~~~Gl~ 99 (102)
+..+.++.+.+.|+++||+|--|.+ |- .+++..... .....+...-.|.+.-.+.++...|.+
T Consensus 151 ~~~~~a~~l~~~g~~~Vvvt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~GaGD~f~aalaa~la~g~~ 222 (254)
T TIGR00097 151 DMIKAAKKLRELGPKAVLIKGGHLEGDQAVDVLFDGGEIHILKAPRIETKNTHGTGCTLSAAIAANLAKGLS 222 (254)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCceeEEEEECCeEEEEEecccCCCCCCChHHHHHHHHHHHHHCCCC
Confidence 4567888888899999999988743 43 334332110 111112222357776666666666643
No 248
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=24.46 E-value=66 Score=18.34 Aligned_cols=28 Identities=7% Similarity=0.185 Sum_probs=21.5
Q ss_pred hHHhhccCCCCCCCHHHHHHHHHHcCCCe
Q psy1381 24 YQDFAKDFTAEFFDANHWADILASSGAKY 52 (102)
Q Consensus 24 Y~~~a~~F~p~~fDp~~Wa~l~k~aGaky 52 (102)
-.+|..++..-. ++++.++++++.|...
T Consensus 16 d~~l~~~l~~~~-~~~e~~~lA~~~Gy~f 43 (49)
T PF07862_consen 16 DPELREQLKACQ-NPEEVVALAREAGYDF 43 (49)
T ss_pred CHHHHHHHHhcC-CHHHHHHHHHHcCCCC
Confidence 346666666655 9999999999999764
No 249
>PRK15450 signal transduction protein PmrD; Provisional
Probab=24.39 E-value=46 Score=22.33 Aligned_cols=23 Identities=17% Similarity=0.403 Sum_probs=19.2
Q ss_pred hhccCCCCCCCHHHHHHHHHHcC
Q psy1381 27 FAKDFTAEFFDANHWADILASSG 49 (102)
Q Consensus 27 ~a~~F~p~~fDp~~Wa~l~k~aG 49 (102)
-.+..+++.+.+++|.++.+.+|
T Consensus 63 t~Kii~As~Ys~deW~r~~~~~~ 85 (85)
T PRK15450 63 TLKILSASCYSPDEWERQCKKAG 85 (85)
T ss_pred eEEEEeccccCHHHHHHHhccCC
Confidence 34667899999999999998775
No 250
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=24.36 E-value=1.4e+02 Score=26.54 Aligned_cols=58 Identities=16% Similarity=0.127 Sum_probs=36.1
Q ss_pred HHHHHHHcCCCeEEEeeeecC---------Ccc-cCCCCCCCCcccccCC----CCCchHHHHHHHHhhcCCC
Q psy1381 41 WADILASSGAKYVVLTSKHHE---------GYT-LWPSKYAFSWNSMDIG----PKRDLVDYTFGNWFTGGSP 99 (102)
Q Consensus 41 Wa~l~k~aGakyvvlTtKHHd---------GF~-lW~S~~~~~~~s~~~~----p~rDiv~el~~a~~~~Gl~ 99 (102)
.++-++++|+..|-|+--+.- |.. .|--... +|..++.. +..+=+++|+++|+++||-
T Consensus 189 ~LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~-~y~a~d~~y~~~g~~~efk~LV~~~H~~GI~ 260 (688)
T TIGR02100 189 MIDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTL-GFFAPEPRYLASGQVAEFKTMVRALHDAGIE 260 (688)
T ss_pred hhHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcc-cccccChhhcCCCCHHHHHHHHHHHHHCCCE
Confidence 577889999999988876532 100 1221222 23333321 2356799999999999983
No 251
>cd07582 nitrilase_4 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=24.22 E-value=1.8e+02 Score=22.10 Aligned_cols=59 Identities=10% Similarity=0.030 Sum_probs=34.7
Q ss_pred HHHHHHHH-----cCCCeEEEeeeecCCcccCCCCCCCCcccccCCCCCchHHHHHHHHhhcCC
Q psy1381 40 HWADILAS-----SGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVDYTFGNWFTGGS 98 (102)
Q Consensus 40 ~Wa~l~k~-----aGakyvvlTtKHHdGF~lW~S~~~~~~~s~~~~p~rDiv~el~~a~~~~Gl 98 (102)
++++.+++ .|+.-+||=--.--||++.+......+...........+..|.+.++++|+
T Consensus 28 ~~i~~A~~~~~~~~gadlivfPE~~ltGy~~~~~~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i 91 (294)
T cd07582 28 EQIDAAVGFSGPGLPVRLVVLPEYALQGFPMGEPREVWQFDKAAIDIPGPETEALGEKAKELNV 91 (294)
T ss_pred HHHHHHHHhcccCCCceEEEcCccccccCCcccchhhhhhhhccccCCCHHHHHHHHHHHHcCE
Confidence 45555554 378888876666778887543221101111111234688999999998875
No 252
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=24.12 E-value=2.4e+02 Score=21.56 Aligned_cols=53 Identities=13% Similarity=0.061 Sum_probs=33.9
Q ss_pred HHHHHHHHHcCCCeEEEeeeecCCcccCCCCCCCCcccccCCCCCchHHHHHHHHhhcCCC
Q psy1381 39 NHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVDYTFGNWFTGGSP 99 (102)
Q Consensus 39 ~~Wa~l~k~aGakyvvlTtKHHdGF~lW~S~~~~~~~s~~~~p~rDiv~el~~a~~~~Gl~ 99 (102)
.+.++..++.|+..+=+.. +|-...++... . ...-..|.+.++++.+++.|++
T Consensus 123 ~~~v~~~~~~G~~~iK~~~---~g~~~~~~~~~-~----~~~~~~e~l~~~~~~A~~~g~~ 175 (342)
T cd01299 123 RAAVREQLRRGADQIKIMA---TGGVLSPGDPP-P----DTQFSEEELRAIVDEAHKAGLY 175 (342)
T ss_pred HHHHHHHHHhCCCEEEEec---cCCcCCCCCCC-c----ccCcCHHHHHHHHHHHHHcCCE
Confidence 4577777788999887665 33222222111 0 0112468999999999999986
No 253
>cd02419 Peptidase_C39C A sub-family of peptidase family C39. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is conserved in this sub-family.
Probab=24.07 E-value=2.1e+02 Score=18.41 Aligned_cols=43 Identities=9% Similarity=0.040 Sum_probs=33.4
Q ss_pred HHHHHhCCCCCChHHhhccC--CCCCCCHHHHHHHHHHcCCCeEE
Q psy1381 12 KFMERNYKPGFTYQDFAKDF--TAEFFDANHWADILASSGAKYVV 54 (102)
Q Consensus 12 ~~~~~~~~~~~~Y~~~a~~F--~p~~fDp~~Wa~l~k~aGakyvv 54 (102)
..+.+.|+-..+-+++...+ ++..++.....++++.+|++--+
T Consensus 18 ~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~l~~~a~~~Gl~~~~ 62 (127)
T cd02419 18 AMIASYHGHHVDLASLRQRFPVSLKGATLADLIDIAQQLGLSTRA 62 (127)
T ss_pred HHHHHHcCCCCCHHHHHHHcCCCCCCcCHHHHHHHHHHCCCceeE
Confidence 56677788788888887765 44679999999999999975433
No 254
>cd07362 HPCD_like Class III extradiol dioxygenases with similarity to homoprotocatechuate 2,3-dioxygenase, which catalyzes the key ring cleavage step in the metabolism of homoprotocatechuate. This subfamily of class III extradiol dioxygenases consists of two types of proteins with known enzymatic activities; 3,4-dihydroxyphenylacetate (homoprotocatechuate) 2,3-dioxygenase (HPCD) and 2-amino-5-chlorophenol 1,6-dioxygenase. HPCD catalyzes the key ring cleavage step in the metabolism of homoprotocatechuate (hpca), a central intermediate in the bacterial degradation of aromatic compounds. The enzyme incorporates both atoms of molecular oxygen into hpca, resulting in aromatic ring-opening to yield the product alpha-hydroxy-delta-carboxymethyl cis-muconic semialdehyde. 2-amino-5-chlorophenol 1,6-dioxygenase catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, which is an intermediate during p-chloronitrobenzene degradation. The enzyme is probably a heterotetrame
Probab=23.93 E-value=2.4e+02 Score=21.79 Aligned_cols=62 Identities=8% Similarity=-0.011 Sum_probs=37.5
Q ss_pred HHHHHHHHHcCCCeEEEeeeecCCcc---cCCCCC-----C----CCc--c-cccCCCCCchHHHHHHHHhhcCCCC
Q psy1381 39 NHWADILASSGAKYVVLTSKHHEGYT---LWPSKY-----A----FSW--N-SMDIGPKRDLVDYTFGNWFTGGSPG 100 (102)
Q Consensus 39 ~~Wa~l~k~aGakyvvlTtKHHdGF~---lW~S~~-----~----~~~--~-s~~~~p~rDiv~el~~a~~~~Gl~~ 100 (102)
+++.+.+++..-+-+|+.+-||.=+. ...... + +++ . ........+|..++++.+++.|++-
T Consensus 33 ~~l~~~l~~~~Pd~IvvvS~Hw~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~y~~~g~~~LA~~i~~~l~~~Gi~~ 109 (272)
T cd07362 33 KEIRKRIEELKPDVILVISCHWMSSSFHHFVDATPRHGGLTAVECPDLISDVPYDYPGDPELGRLLVEEGQEAGLRV 109 (272)
T ss_pred HHHHHHhhHcCCCEEEEECCCcccccceeeeccCccccccccCcCCchhhccccCCCCCHHHHHHHHHHHHHcCCce
Confidence 34556666678899999999986332 111110 0 000 0 0011225789999999999999874
No 255
>PRK02113 putative hydrolase; Provisional
Probab=23.89 E-value=1.4e+02 Score=22.06 Aligned_cols=28 Identities=14% Similarity=-0.001 Sum_probs=23.7
Q ss_pred CCCCCCCHHHHHHHHHHcCCCeEEEeee
Q psy1381 31 FTAEFFDANHWADILASSGAKYVVLTSK 58 (102)
Q Consensus 31 F~p~~fDp~~Wa~l~k~aGakyvvlTtK 58 (102)
..+....+++=+++++++++|.++||==
T Consensus 196 ~~~~H~t~~~a~~~~~~~~~k~l~l~H~ 223 (252)
T PRK02113 196 PHPTHQSLEEALENIKRIGAKETYLIHM 223 (252)
T ss_pred CCCCcCCHHHHHHHHHHhCCCEEEEEcc
Confidence 3456788999999999999999998843
No 256
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=23.80 E-value=95 Score=23.40 Aligned_cols=20 Identities=25% Similarity=0.526 Sum_probs=18.4
Q ss_pred CCHHHHHHHHHHcCCCeEEE
Q psy1381 36 FDANHWADILASSGAKYVVL 55 (102)
Q Consensus 36 fDp~~Wa~l~k~aGakyvvl 55 (102)
-+|+.+++.+.++|+.++.+
T Consensus 75 ~~p~~~i~~~~~~Gad~itv 94 (228)
T PTZ00170 75 SNPEKWVDDFAKAGASQFTF 94 (228)
T ss_pred CCHHHHHHHHHHcCCCEEEE
Confidence 57999999999999999877
No 257
>COG2503 Predicted secreted acid phosphatase [General function prediction only]
Probab=23.71 E-value=13 Score=29.78 Aligned_cols=41 Identities=27% Similarity=0.390 Sum_probs=29.2
Q ss_pred ccCCCCCCCHHHHHHHHHH---cCCCeEEEeeeecCCcccCCCCCC
Q psy1381 29 KDFTAEFFDANHWADILAS---SGAKYVVLTSKHHEGYTLWPSKYA 71 (102)
Q Consensus 29 ~~F~p~~fDp~~Wa~l~k~---aGakyvvlTtKHHdGF~lW~S~~~ 71 (102)
..|+|+.|| .|++..+. +||.-.+=.+.-|.|--+|-|+-.
T Consensus 105 k~f~pe~Wd--~wV~a~~sk~vpGA~eFl~Yvn~~Gg~ifyiSNR~ 148 (274)
T COG2503 105 KGFTPETWD--KWVQAKKSKAVPGAVEFLNYVNSNGGKIFYISNRD 148 (274)
T ss_pred CCCCccchH--HHHhhcccccCccHHHHHHHHHhcCcEEEEEeccc
Confidence 457777664 67776654 577777777788888888877665
No 258
>COG2136 IMP4 Predicted exosome subunit/U3 small nucleolar ribonucleoprotein (snoRNP) component, contains IMP4 domain [Translation, ribosomal structure and biogenesis / RNA processing and modification]
Probab=23.71 E-value=1.7e+02 Score=21.99 Aligned_cols=54 Identities=11% Similarity=0.107 Sum_probs=38.8
Q ss_pred CCCCChHHHHHHHHh--CCCCCChHHhhccCCCCCCCHHHHHHHHHHcCCCeEEEeeeecCC
Q psy1381 3 SENPNSTVTKFMERN--YKPGFTYQDFAKDFTAEFFDANHWADILASSGAKYVVLTSKHHEG 62 (102)
Q Consensus 3 ~~~~~~~y~~~~~~~--~~~~~~Y~~~a~~F~p~~fDp~~Wa~l~k~aGakyvvlTtKHHdG 62 (102)
|++|+.--.+|.+.= ..|+. -..+-.+.+-.+.++.|...|+.+++++..+|.+
T Consensus 9 SRkPS~Rtr~Fak~L~~~lp~~------~~~~rg~~~~~el~~~a~~~g~~~l~iv~E~rGn 64 (191)
T COG2136 9 SRKPSRRTRSFAKDLSRVLPNA------YFLRRGKKSIIELSEEAIARGATDLLIVGERRGN 64 (191)
T ss_pred cCCccHHHHHHHHHHHHhCCcc------eEEecCccchhHHHHHHHhcCCceEEEEEEecCC
Confidence 788888888887741 11111 1123356677799999999999999999998843
No 259
>cd08560 GDPD_EcGlpQ_like_1 Glycerophosphodiester phosphodiesterase domain similar to Escherichia coli periplasmic phosphodiesterase (GlpQ) include uncharacterized proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and their hypothetical homologs. Members in this subfamily show high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=23.70 E-value=2.6e+02 Score=22.84 Aligned_cols=61 Identities=10% Similarity=0.034 Sum_probs=42.8
Q ss_pred CHHHHHHHHHHcCCCeEEEeeeecCCcccCCCCCCCCcccccCC--CCCchHHHHHHHHhhcCCCC
Q psy1381 37 DANHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIG--PKRDLVDYTFGNWFTGGSPG 100 (102)
Q Consensus 37 Dp~~Wa~l~k~aGakyvvlTtKHHdGF~lW~S~~~~~~~s~~~~--p~rDiv~el~~a~~~~Gl~~ 100 (102)
-+..+++.|+++|.+-.+-|.+.-..|.. .-..+|.+.... ...|+..++-.-+++.|+.|
T Consensus 279 ~~~~~v~~Ah~~GL~V~~WTvr~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvDG 341 (356)
T cd08560 279 VPSEYAKAAKAAGLDIITWTLERSGPLAS---GGGWYYQTIEDVINNDGDMYNVLDVLARDVGILG 341 (356)
T ss_pred CCHHHHHHHHHcCCEEEEEEeecCccccc---CcccccccccccccccccHHHHHHHHHHhcCCCE
Confidence 46789999999999999999998777762 111122222222 25788888877778999876
No 260
>PLN02978 pyridoxal kinase
Probab=23.66 E-value=98 Score=24.22 Aligned_cols=25 Identities=36% Similarity=0.450 Sum_probs=20.1
Q ss_pred HHHHHHHHHHcCCCeEEEeeeecCC
Q psy1381 38 ANHWADILASSGAKYVVLTSKHHEG 62 (102)
Q Consensus 38 p~~Wa~l~k~aGakyvvlTtKHHdG 62 (102)
..+.++.+.+.|++.||+|.-|.+|
T Consensus 174 ~~~a~~~l~~~g~~~VVITs~~~~~ 198 (308)
T PLN02978 174 AREACAILHAAGPSKVVITSIDIDG 198 (308)
T ss_pred HHHHHHHHHHhCCCEEEEEEecCCC
Confidence 3467777788899999999988754
No 261
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=23.62 E-value=46 Score=26.54 Aligned_cols=54 Identities=13% Similarity=0.261 Sum_probs=27.4
Q ss_pred CCCCCCCHHHH---HHHHHHcCCCeEEEeeeecCCcccCCCCCCCCcccccCCC---CCchHHHHHHHHhhcCC
Q psy1381 31 FTAEFFDANHW---ADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGP---KRDLVDYTFGNWFTGGS 98 (102)
Q Consensus 31 F~p~~fDp~~W---a~l~k~aGakyvvlTtKHHdGF~lW~S~~~~~~~s~~~~p---~rDiv~el~~a~~~~Gl 98 (102)
++||.++.+.| +++++++|++.|-|.. --| ..+...+ .-+.+..+++.++++||
T Consensus 2 y~pe~~~~e~~~~d~~~m~~~G~n~vri~~------~~W--------~~lEP~eG~ydF~~lD~~l~~a~~~Gi 61 (374)
T PF02449_consen 2 YYPEQWPEEEWEEDLRLMKEAGFNTVRIGE------FSW--------SWLEPEEGQYDFSWLDRVLDLAAKHGI 61 (374)
T ss_dssp --GGGS-CCHHHHHHHHHHHHT-SEEEE-C------CEH--------HHH-SBTTB---HHHHHHHHHHHCTT-
T ss_pred CCcccCCHHHHHHHHHHHHHcCCCEEEEEE------ech--------hhccCCCCeeecHHHHHHHHHHHhccC
Confidence 34555655555 5677888888876521 112 1111111 24567888888888886
No 262
>PF08819 DUF1802: Domain of unknown function (DUF1802); InterPro: IPR014923 The function of this family is unknown. This region is found associated with a IPR007560 from INTERPRO suggesting they could be part of a restriction modification system.
Probab=23.62 E-value=72 Score=23.76 Aligned_cols=33 Identities=18% Similarity=0.469 Sum_probs=28.2
Q ss_pred HHHHHHHHHcCCCeEEEeeee-------------cCCcccCCCCCC
Q psy1381 39 NHWADILASSGAKYVVLTSKH-------------HEGYTLWPSKYA 71 (102)
Q Consensus 39 ~~Wa~l~k~aGakyvvlTtKH-------------HdGF~lW~S~~~ 71 (102)
++|+-.+...+..-.++.-+. |+.|.||||...
T Consensus 4 KEWa~~v~AL~~G~q~illRKGGI~E~~~~F~~~~~~FlLyPT~~H 49 (177)
T PF08819_consen 4 KEWAAAVEALGQGRQIILLRKGGIHEGRGGFRVEHREFLLYPTYEH 49 (177)
T ss_pred chHHHHHHHHhCCCeEEEEecCcccCCCCccccccceEEEccChhh
Confidence 579999999998888888777 678999999885
No 263
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=23.61 E-value=58 Score=17.66 Aligned_cols=10 Identities=10% Similarity=0.827 Sum_probs=7.2
Q ss_pred HHHHHHHHHc
Q psy1381 39 NHWADILASS 48 (102)
Q Consensus 39 ~~Wa~l~k~a 48 (102)
.+|+.|+++|
T Consensus 3 ~EW~~Li~eA 12 (30)
T PF08671_consen 3 EEWVELIKEA 12 (30)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4788887765
No 264
>cd01937 ribokinase_group_D Ribokinase-like subgroup D. Found in bacteria and archaea, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=23.60 E-value=1e+02 Score=22.38 Aligned_cols=30 Identities=17% Similarity=0.377 Sum_probs=23.2
Q ss_pred CHHHHHHHHHHcCCCeEEEeeeecCCcccCC
Q psy1381 37 DANHWADILASSGAKYVVLTSKHHEGYTLWP 67 (102)
Q Consensus 37 Dp~~Wa~l~k~aGakyvvlTtKHHdGF~lW~ 67 (102)
+++++++.+.+.|++.+|+|--.. |-.+++
T Consensus 171 ~~~~~~~~l~~~g~~~vvvt~g~~-g~~~~~ 200 (254)
T cd01937 171 TPTELARLIKETGVKEIIVTDGEE-GGYIFD 200 (254)
T ss_pred CHHHHHHHHHHcCCCEEEEeeCCc-ceEEEE
Confidence 688999999999999988887764 544443
No 265
>cd07197 nitrilase Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes. This superfamily (also known as the C-N hydrolase superfamily) contains hydrolases that break carbon-nitrogen bonds; it includes nitrilases, cyanide dihydratases, aliphatic amidases, N-terminal amidases, beta-ureidopropionases, biotinidases, pantotheinase, N-carbamyl-D-amino acid amidohydrolases, the glutaminase domain of glutamine-dependent NAD+ synthetase, apolipoprotein N-acyltransferases, and N-carbamoylputrescine amidohydrolases, among others. These enzymes depend on a Glu-Lys-Cys catalytic triad, and work through a thiol acylenzyme intermediate. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. These oligomers include dimers, tetramers, hexamers, octamers, tetradecamers, octadecamers, as well as variable length helical arrangements and homo-oligomeric spirals. These proteins have roles in vitamin and
Probab=23.47 E-value=2.1e+02 Score=20.52 Aligned_cols=57 Identities=16% Similarity=0.072 Sum_probs=35.9
Q ss_pred HHHHHHHHHcCCCeEEEeeeecCCcccCCCCCCCCcccccCCCCCchHHHHHHHHhhcCC
Q psy1381 39 NHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVDYTFGNWFTGGS 98 (102)
Q Consensus 39 ~~Wa~l~k~aGakyvvlTtKHHdGF~lW~S~~~~~~~s~~~~p~rDiv~el~~a~~~~Gl 98 (102)
.+.++.+++.|+.-+||=--...||..++-..... .......+.+..|.+.+++.|+
T Consensus 21 ~~~i~~a~~~g~dlvvfPE~~l~g~~~~~~~~~~~---~~~~~~~~~~~~l~~~a~~~~i 77 (253)
T cd07197 21 LRLIKEAAEQGADLIVLPELFLTGYSFESAKEDLD---LAEELDGPTLEALAELAKELGI 77 (253)
T ss_pred HHHHHHHHHCCCCEEEcCCccccCCccccchhhhh---hcccCCchHHHHHHHHHHHhCe
Confidence 34566777889999998776677777654332210 0111235677788888887765
No 266
>cd07578 nitrilase_1_R1 First nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). Members of this subgroup have two nitrilase domains. This is the first of those two domains. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=23.47 E-value=1.5e+02 Score=21.97 Aligned_cols=56 Identities=11% Similarity=0.012 Sum_probs=34.5
Q ss_pred HHHHHHHHcCCCeEEEeeeecCCcccCCCCCCCCcccccCCCCCchHHHHHHHHhhcCC
Q psy1381 40 HWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVDYTFGNWFTGGS 98 (102)
Q Consensus 40 ~Wa~l~k~aGakyvvlTtKHHdGF~lW~S~~~~~~~s~~~~p~rDiv~el~~a~~~~Gl 98 (102)
++++.+++.|+.-+||=--.--||+.++......+-. ....+.+..|.+.+++.|+
T Consensus 24 ~~i~~A~~~gadlivfPE~~l~gy~~~~~~~~~~~~~---~~~~~~~~~l~~~a~~~~i 79 (258)
T cd07578 24 ALCEEAARAGARLIVTPEMATTGYCWYDRAEIAPFVE---PIPGPTTARFAELAREHDC 79 (258)
T ss_pred HHHHHHHhCCCCEEEcccccccCCCcCCHHHhhhhcc---cCCCHHHHHHHHHHHHcCc
Confidence 4566677789988887666666887554322111111 1123578888888988876
No 267
>PRK11633 cell division protein DedD; Provisional
Probab=23.44 E-value=1.7e+02 Score=22.59 Aligned_cols=55 Identities=22% Similarity=0.335 Sum_probs=41.9
Q ss_pred CHHHHHHHHHHcCCCeEEEeeeecCCcccCCCCCCCCcccccCCC--CCchHHHHHHHHhh-cCCCCC
Q psy1381 37 DANHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGP--KRDLVDYTFGNWFT-GGSPGK 101 (102)
Q Consensus 37 Dp~~Wa~l~k~aGakyvvlTtKHHdGF~lW~S~~~~~~~s~~~~p--~rDiv~el~~a~~~-~Gl~~~ 101 (102)
+++++++-++.+|.+--+...+.-+| .|+-+..|| .||-........++ .||.|.
T Consensus 162 ~A~~l~~kL~~~G~~Ay~~~~~~~~G----------~~tRV~VGP~~sk~~ae~~~~~Lk~~~Gl~g~ 219 (226)
T PRK11633 162 KVNEIVAKLRLSGYRVYTVPSTPVQG----------KITRIYVGPDASKDKLKGSLGELKQLSGLSGV 219 (226)
T ss_pred HHHHHHHHHHHCCCeeEEEeeecCCC----------cEEEEEeCCCCCHHHHHHHHHHHHHhcCCCce
Confidence 57889999999999988877776665 233556677 57888888888888 599874
No 268
>cd01051 Mn_catalase Manganese catalase, ferritin-like diiron-binding domain. Manganese (Mn) catalase is a member of a broad superfamily of ferritin-like diiron enzymes. While many diiron enzymes catalyze dioxygen-dependent reactions, manganese catalase performs peroxide-dependent oxidation-reduction. Catalases are important antioxidant metalloenzymes that catalyze disproportionation of hydrogen peroxide, forming dioxygen and water. Manganese catalase, a nonheme type II catalase, contains a binuclear manganese cluster that catalyzes the redox dismutation of hydrogen peroxide, interconverting between dimanganese(II) [(2,2)] and dimanganese(III) [(3,3)] oxidation states during turnover. Mn catalases are found in a broad range of microorganisms in microaerophilic environments, including the mesophilic lactic acid bacteria (e.g., Lactobacillus plantarum) and bacterial and archaeal thermophiles (e.g., Thermus thermophilus and Pyrobaculum caldifontis). L. plantarum and T. thermophilus holoenz
Probab=23.42 E-value=2.9e+02 Score=19.82 Aligned_cols=22 Identities=9% Similarity=0.212 Sum_probs=17.2
Q ss_pred CCCChHHHHHHHHhC-CCCCChH
Q psy1381 4 ENPNSTVTKFMERNY-KPGFTYQ 25 (102)
Q Consensus 4 ~~~~~~y~~~~~~~~-~~~~~Y~ 25 (102)
.+|||.|++.+...| |+..++.
T Consensus 15 ~~p~p~~A~~l~~~~gG~~gEl~ 37 (156)
T cd01051 15 DKPDPRFAKLLQEQLGGAFGELS 37 (156)
T ss_pred CCCCHHHHHHHHHHhCCccHHHH
Confidence 579999999999999 4554443
No 269
>PLN02905 beta-amylase
Probab=23.37 E-value=1.7e+02 Score=26.48 Aligned_cols=55 Identities=11% Similarity=-0.024 Sum_probs=38.3
Q ss_pred HHHHHHHHHcCCCeEEEeeeecCCcccCCCCCCCCcccccCCCCCchHHHHHHHHhhcCCCC
Q psy1381 39 NHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVDYTFGNWFTGGSPG 100 (102)
Q Consensus 39 ~~Wa~l~k~aGakyvvlTtKHHdGF~lW~S~~~~~~~s~~~~p~rDiv~el~~a~~~~Gl~~ 100 (102)
...++.+++-|+.. +|| +.-|=|++...++...... ...||.++..+|+++||+-
T Consensus 578 ~pIa~mfarh~~~l-~FT-----ClEM~D~eqp~~~~~a~ss-PE~LV~QV~~aA~~~GV~v 632 (702)
T PLN02905 578 AAIASMLKKHGAAL-NFV-----CGEVQMLNRPDDFSEALGD-PEGLAWQVLNAAWDVDTPV 632 (702)
T ss_pred HHHHHHHHHcCCeE-EEE-----ecccccCCCCCccccccCC-HHHHHHHHHHHHHHhCCce
Confidence 67899999999875 444 4456666654222222333 3789999999999999863
No 270
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=23.33 E-value=1.2e+02 Score=24.07 Aligned_cols=54 Identities=7% Similarity=-0.055 Sum_probs=31.3
Q ss_pred HHHHHHcCCCeEEEeeeecCCcccCCCCCCCCcccccCCC----CCchHHHHHHHHhhc
Q psy1381 42 ADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGP----KRDLVDYTFGNWFTG 96 (102)
Q Consensus 42 a~l~k~aGakyvvlTtKHHdGF~lW~S~~~~~~~s~~~~p----~rDiv~el~~a~~~~ 96 (102)
|+.++++|+..|=|-.-|.--..-|=|..++. .+-..|. +.+++.|++++.|+.
T Consensus 143 A~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~-RtD~yGGslenR~r~~~eiv~aIR~~ 200 (353)
T cd02930 143 AALAREAGYDGVEIMGSEGYLINQFLAPRTNK-RTDEWGGSFENRMRFPVEIVRAVRAA 200 (353)
T ss_pred HHHHHHcCCCEEEEecccchHHHHhcCCccCC-CcCccCCCHHHHhHHHHHHHHHHHHH
Confidence 45567799999988555532233344444311 1112332 357788888888874
No 271
>PRK03705 glycogen debranching enzyme; Provisional
Probab=23.32 E-value=2.2e+02 Score=25.28 Aligned_cols=58 Identities=14% Similarity=0.087 Sum_probs=34.7
Q ss_pred HHHHHHHcCCCeEEEeeeecC---------Cc-ccCCCCCCCCcccccCCCC------CchHHHHHHHHhhcCCC
Q psy1381 41 WADILASSGAKYVVLTSKHHE---------GY-TLWPSKYAFSWNSMDIGPK------RDLVDYTFGNWFTGGSP 99 (102)
Q Consensus 41 Wa~l~k~aGakyvvlTtKHHd---------GF-~lW~S~~~~~~~s~~~~p~------rDiv~el~~a~~~~Gl~ 99 (102)
-++-++++|...|-|+--+.- |. ..|--... +|.+++...+ .+=+++|+++|+++||.
T Consensus 184 ~LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~-~yfa~d~~ygt~~~~~~~efk~LV~~~H~~GI~ 257 (658)
T PRK03705 184 MIAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPL-AMFALDPAYASGPETALDEFRDAVKALHKAGIE 257 (658)
T ss_pred chHHHHHcCCCEEEecCcccCCCcccccccccccccCcccc-cccccccccCCCCcchHHHHHHHHHHHHHCCCE
Confidence 467889999999988765431 11 11222222 2333332222 24689999999999984
No 272
>PHA00497 pol RNA-dependent RNA polymerase
Probab=23.22 E-value=73 Score=28.55 Aligned_cols=27 Identities=15% Similarity=0.314 Sum_probs=22.2
Q ss_pred HHHcCCCeEEEeeeecCCcccCCCCCC
Q psy1381 45 LASSGAKYVVLTSKHHEGYTLWPSKYA 71 (102)
Q Consensus 45 ~k~aGakyvvlTtKHHdGF~lW~S~~~ 71 (102)
+---|.+--..|-+||.||.|||.-..
T Consensus 115 vs~nGl~tnF~tmrtv~g~pm~P~t~p 141 (673)
T PHA00497 115 VSGNGLRTNFGTMRTVSGFPMIPATAP 141 (673)
T ss_pred ccccceeecccceeeecCcccCccccc
Confidence 444577888899999999999998664
No 273
>cd02420 Peptidase_C39D A sub-family of peptidase family C39. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is conserved in this sub-family.
Probab=23.10 E-value=2.2e+02 Score=18.30 Aligned_cols=41 Identities=7% Similarity=-0.008 Sum_probs=33.1
Q ss_pred HHHHHhCCCCCChHHhhccCC--CCCCCHHHHHHHHHHcCCCe
Q psy1381 12 KFMERNYKPGFTYQDFAKDFT--AEFFDANHWADILASSGAKY 52 (102)
Q Consensus 12 ~~~~~~~~~~~~Y~~~a~~F~--p~~fDp~~Wa~l~k~aGaky 52 (102)
.++.+.|+-..+-.++..... .+.++.....++++.+|.+-
T Consensus 18 ~~i~~~~g~~~~~~~l~~~~~~~~~~~~~~~l~~~a~~~Gl~~ 60 (125)
T cd02420 18 AIILAYYGRYVPLSELRIACGVSRDGSNASNLLKAAREYGLTA 60 (125)
T ss_pred HHHHHHcCCCCCHHHHHHHcCCCCCCCCHHHHHHHHHHcCccc
Confidence 677888888888888877653 45789999999999999654
No 274
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=23.08 E-value=92 Score=25.33 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=19.7
Q ss_pred CCCHHHHHHHHH-HcCCCeEEEee
Q psy1381 35 FFDANHWADILA-SSGAKYVVLTS 57 (102)
Q Consensus 35 ~fDp~~Wa~l~k-~aGakyvvlTt 57 (102)
-=||.+|+.... ++||.++.+-.
T Consensus 74 ~~~p~~~Ak~q~~~~GAd~Idl~~ 97 (319)
T PRK04452 74 MNDPAAWAKKCVEEYGADMITLHL 97 (319)
T ss_pred hcCHHHHHHHHHHHhCCCEEEEEC
Confidence 448999999997 99999998863
No 275
>PRK06427 bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed
Probab=23.08 E-value=1.9e+02 Score=21.51 Aligned_cols=62 Identities=15% Similarity=0.110 Sum_probs=35.7
Q ss_pred HHHHHHHHHHcCCCeEEEeeeec-CCc----ccCCCCCCC-----CcccccCCCCCchHHHHHHHHhhcCCC
Q psy1381 38 ANHWADILASSGAKYVVLTSKHH-EGY----TLWPSKYAF-----SWNSMDIGPKRDLVDYTFGNWFTGGSP 99 (102)
Q Consensus 38 p~~Wa~l~k~aGakyvvlTtKHH-dGF----~lW~S~~~~-----~~~s~~~~p~rDiv~el~~a~~~~Gl~ 99 (102)
..+.++.+.+.|++.||+|.-|. +|- .+++..... .....+...-.|++.-.+-++...|.+
T Consensus 159 ~~~~a~~l~~~g~~~Vvit~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~GaGD~f~a~l~~~l~~g~~ 230 (266)
T PRK06427 159 MKAAARALHALGCKAVLIKGGHLLDGEESVDWLFDGEGEERFSAPRIPTKNTHGTGCTLSAAIAAELAKGAS 230 (266)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCCCCCceeEEEEeCCcEEEEEeeeECCCCCCChHHHHHHHHHHHHHCCCC
Confidence 45677778888999999999884 441 233322110 011112233467777776666666643
No 276
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=23.05 E-value=2e+02 Score=22.80 Aligned_cols=34 Identities=15% Similarity=0.100 Sum_probs=22.8
Q ss_pred HHHcCCCeEEEeeeecCCcccCCCCCCCCcccccCCCCCchHHHHHHHHhhcCCC
Q psy1381 45 LASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVDYTFGNWFTGGSP 99 (102)
Q Consensus 45 ~k~aGakyvvlTtKHHdGF~lW~S~~~~~~~s~~~~p~rDiv~el~~a~~~~Gl~ 99 (102)
+.+.|.|.+|+.+ .||.+ +| -++|.+.+|++|+.
T Consensus 85 ~~~~gvk~avI~s---~Gf~~-----------------~~-~~~l~~~a~~~gir 118 (291)
T PRK05678 85 AIDAGIDLIVCIT---EGIPV-----------------LD-MLEVKAYLERKKTR 118 (291)
T ss_pred HHHCCCCEEEEEC---CCCCH-----------------HH-HHHHHHHHHHcCCE
Confidence 4457888988877 46631 11 14888899998874
No 277
>CHL00139 rpl18 ribosomal protein L18; Validated
Probab=22.93 E-value=60 Score=22.33 Aligned_cols=41 Identities=15% Similarity=0.033 Sum_probs=31.1
Q ss_pred HHHHHHHHHcCCCeEEEeeeecCCcccCCCCCCCCcccccCCCCCchHHHHHHHHhhcCCC
Q psy1381 39 NHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVDYTFGNWFTGGSP 99 (102)
Q Consensus 39 ~~Wa~l~k~aGakyvvlTtKHHdGF~lW~S~~~~~~~s~~~~p~rDiv~el~~a~~~~Gl~ 99 (102)
...++.++++|...|||--. |+- ..--|+.|++++|+.||.
T Consensus 68 ~lla~ra~~~gi~~vvfDrg---g~~-----------------yhGrV~a~a~~are~GL~ 108 (109)
T CHL00139 68 QKLAKKSLKKGITKVVFDRG---GKL-----------------YHGRIKALAEAAREAGLQ 108 (109)
T ss_pred HHHHHHHHHCCCCEEEEcCC---CCc-----------------cchHHHHHHHHHHHhCCC
Confidence 56788999999999988532 211 134699999999999984
No 278
>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism]
Probab=22.85 E-value=2e+02 Score=24.74 Aligned_cols=50 Identities=24% Similarity=0.277 Sum_probs=38.1
Q ss_pred CCCHHHHHHHHHHcCCC---eEEEeeeecCCcccCCCCCCCCcccccCCC-CCchHHHHHHHHhhcCCC
Q psy1381 35 FFDANHWADILASSGAK---YVVLTSKHHEGYTLWPSKYAFSWNSMDIGP-KRDLVDYTFGNWFTGGSP 99 (102)
Q Consensus 35 ~fDp~~Wa~l~k~aGak---yvvlTtKHHdGF~lW~S~~~~~~~s~~~~p-~rDiv~el~~a~~~~Gl~ 99 (102)
+||-+..-+++.+.|+. |+|+|..- |++--.| ..+=+++..+-|.++|+|
T Consensus 168 d~D~~kLe~lidevG~~nvp~I~~tiT~---------------NsagGQpVSm~n~r~v~~ia~ky~ip 221 (471)
T COG3033 168 NFDLEKLERLIDEVGADNVPYIVLTITN---------------NSAGGQPVSMANMKAVYEIAKKYDIP 221 (471)
T ss_pred ccCHHHHHHHHHHhCcccCcEEEEEEec---------------cccCCCcchHHhHHHHHHHHHHcCCc
Confidence 78889999999999987 77777421 2332223 567789999999999998
No 279
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=22.82 E-value=1.1e+02 Score=23.25 Aligned_cols=44 Identities=18% Similarity=0.155 Sum_probs=36.1
Q ss_pred HHHHHHHHHcCCCeEEEeeeecCCcccCCCCCCCCcccccCCCCCchHHHHHHHHhhcCCC
Q psy1381 39 NHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVDYTFGNWFTGGSP 99 (102)
Q Consensus 39 ~~Wa~l~k~aGakyvvlTtKHHdGF~lW~S~~~~~~~s~~~~p~rDiv~el~~a~~~~Gl~ 99 (102)
-+|++.+-+.|.+-+.|=-|..+... ...+.+++.+.|+++|+|
T Consensus 24 ~~~ve~al~~Gv~~vQlR~K~~~~~~-----------------~~~~a~~~~~lc~~~~v~ 67 (211)
T COG0352 24 LEWVEAALKGGVTAVQLREKDLSDEE-----------------YLALAEKLRALCQKYGVP 67 (211)
T ss_pred HHHHHHHHhCCCeEEEEecCCCChHH-----------------HHHHHHHHHHHHHHhCCe
Confidence 68999999999999999887665211 168899999999999986
No 280
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=22.82 E-value=2.5e+02 Score=23.44 Aligned_cols=48 Identities=13% Similarity=0.054 Sum_probs=30.2
Q ss_pred CCCCHHHHHHHHHHcCCCeEEEeeeecCCcccCCCCCCCCcccccCCCCCchHHHHHHHHhhcCC
Q psy1381 34 EFFDANHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVDYTFGNWFTGGS 98 (102)
Q Consensus 34 ~~fDp~~Wa~l~k~aGakyvvlTtKHHdGF~lW~S~~~~~~~s~~~~p~rDiv~el~~a~~~~Gl 98 (102)
+.+||++..+.+++- =.+-+++.-|.+ +| +.=+.-++++.++|+++|.
T Consensus 115 ~~v~p~~v~~~L~~~-~~~~~V~~vH~E--------TS--------TGvlnpl~~I~~~~k~~g~ 162 (383)
T COG0075 115 EAVDPEEVEEALDKD-PDIKAVAVVHNE--------TS--------TGVLNPLKEIAKAAKEHGA 162 (383)
T ss_pred CCCCHHHHHHHHhcC-CCccEEEEEecc--------Cc--------ccccCcHHHHHHHHHHcCC
Confidence 678888888888733 222233344655 11 1224468999999999974
No 281
>PLN02361 alpha-amylase
Probab=22.72 E-value=2.6e+02 Score=23.19 Aligned_cols=53 Identities=17% Similarity=0.125 Sum_probs=32.1
Q ss_pred HHHHHHcCCCeEEEeeeecC--CcccCCCCCCCCccccc--CCCCCchHHHHHHHHhhcCCC
Q psy1381 42 ADILASSGAKYVVLTSKHHE--GYTLWPSKYAFSWNSMD--IGPKRDLVDYTFGNWFTGGSP 99 (102)
Q Consensus 42 a~l~k~aGakyvvlTtKHHd--GF~lW~S~~~~~~~s~~--~~p~rDiv~el~~a~~~~Gl~ 99 (102)
++-++++|+..|-|+--... +-=.|+.+. ...+ .| ..+=+++|+++|+++||-
T Consensus 35 l~~l~~lG~t~iwl~P~~~~~~~~GY~~~d~----y~~~~~~G-t~~el~~li~~~h~~gi~ 91 (401)
T PLN02361 35 VPDLAKSGFTSAWLPPPSQSLAPEGYLPQNL----YSLNSAYG-SEHLLKSLLRKMKQYNVR 91 (401)
T ss_pred HHHHHHcCCCEEEeCCCCcCCCCCCCCcccc----cccCcccC-CHHHHHHHHHHHHHcCCE
Confidence 56678999999988864321 111122221 1112 22 345688999999999983
No 282
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=22.61 E-value=1.3e+02 Score=23.74 Aligned_cols=54 Identities=9% Similarity=0.003 Sum_probs=31.5
Q ss_pred HHHHHHcCCCeEEEeeeecCCcccCCCCCCCCcccccCCC----CCchHHHHHHHHhhc
Q psy1381 42 ADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGP----KRDLVDYTFGNWFTG 96 (102)
Q Consensus 42 a~l~k~aGakyvvlTtKHHdGF~lW~S~~~~~~~s~~~~p----~rDiv~el~~a~~~~ 96 (102)
|+.++++|+..|=|-.-|.--..-|=|..+ +-..-..|. +.+++.|++++.|+.
T Consensus 160 A~~a~~aGfDgVei~~~~gyLl~qFlsp~~-N~R~D~yGgsl~nr~rf~~eiv~aIR~~ 217 (336)
T cd02932 160 ARRAVEAGFDVIEIHAAHGYLLHQFLSPLS-NKRTDEYGGSLENRMRFLLEVVDAVRAV 217 (336)
T ss_pred HHHHHHcCCCEEEEccccccHHHHhcCCcc-CCCCcccCCCHHHHhHHHHHHHHHHHHH
Confidence 456678999999886666333344444443 111212233 457777888887764
No 283
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=22.56 E-value=1.6e+02 Score=21.01 Aligned_cols=49 Identities=16% Similarity=0.047 Sum_probs=30.1
Q ss_pred CCCCHHHHHHHHHHcCCCeEEEeeeecCCcccCCCCCCCCcccccCCCCCchHHHHHHHHh
Q psy1381 34 EFFDANHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVDYTFGNWF 94 (102)
Q Consensus 34 ~~fDp~~Wa~l~k~aGakyvvlTtKHHdGF~lW~S~~~~~~~s~~~~p~rDiv~el~~a~~ 94 (102)
+-=+.++ +..+.+.|+.|+.|- ++|+|..-++ ..+.+-+.+.++.+.++
T Consensus 101 S~h~~~e-~~~a~~~g~dYv~~g-------pvf~T~sk~~----~~~~g~~~l~~~~~~~~ 149 (180)
T PF02581_consen 101 SCHSLEE-AREAEELGADYVFLG-------PVFPTSSKPG----APPLGLDGLREIARASP 149 (180)
T ss_dssp EESSHHH-HHHHHHCTTSEEEEE-------TSS--SSSSS-----TTCHHHHHHHHHHHTS
T ss_pred ecCcHHH-HHHhhhcCCCEEEEC-------CccCCCCCcc----ccccCHHHHHHHHHhCC
Confidence 3445566 778889999999986 5788877633 12224566666655543
No 284
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=22.53 E-value=2.3e+02 Score=22.16 Aligned_cols=51 Identities=10% Similarity=-0.070 Sum_probs=34.5
Q ss_pred HHHHHHHHHcCCCeEEEeeeecCCcccCCCCCCCCcccccCCCCCchHHHHHHHHhhcCCCC
Q psy1381 39 NHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVDYTFGNWFTGGSPG 100 (102)
Q Consensus 39 ~~Wa~l~k~aGakyvvlTtKHHdGF~lW~S~~~~~~~s~~~~p~rDiv~el~~a~~~~Gl~~ 100 (102)
-+.|+.+|++|++++-.- .|+-.++ .+ ...|+...=+++|.+.|++.|||-
T Consensus 44 ~~~A~~lk~~g~~~~r~~--------~~kpRTs-~~--s~~G~g~~gl~~l~~~~~~~Gl~~ 94 (266)
T PRK13398 44 VKVAEKLKELGVHMLRGG--------AFKPRTS-PY--SFQGLGEEGLKILKEVGDKYNLPV 94 (266)
T ss_pred HHHHHHHHHcCCCEEEEe--------eecCCCC-CC--ccCCcHHHHHHHHHHHHHHcCCCE
Confidence 567888999999844332 3444444 11 134555677888999999999983
No 285
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=22.52 E-value=1.3e+02 Score=17.95 Aligned_cols=25 Identities=12% Similarity=0.069 Sum_probs=19.9
Q ss_pred CCCCCCHHHHHHHHHHcCCCeEEEe
Q psy1381 32 TAEFFDANHWADILASSGAKYVVLT 56 (102)
Q Consensus 32 ~p~~fDp~~Wa~l~k~aGakyvvlT 56 (102)
.++.-+..+.++.+++.|++=+++|
T Consensus 57 sg~t~~~~~~~~~a~~~g~~ii~it 81 (87)
T cd04795 57 SGRTEELLAALEIAKELGIPVIAIT 81 (87)
T ss_pred CCCCHHHHHHHHHHHHcCCeEEEEe
Confidence 3444556889999999999988888
No 286
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=22.47 E-value=41 Score=25.59 Aligned_cols=26 Identities=15% Similarity=0.312 Sum_probs=18.8
Q ss_pred HHHHHHHHHcCCCeEEEeeeecCCcc
Q psy1381 39 NHWADILASSGAKYVVLTSKHHEGYT 64 (102)
Q Consensus 39 ~~Wa~l~k~aGakyvvlTtKHHdGF~ 64 (102)
+.+.++++..|++-+++++..||-..
T Consensus 140 ~~~~~l~~~~Ga~~~~~~~eeHD~~~ 165 (258)
T PF02153_consen 140 ELVEELWEALGARVVEMDAEEHDRIM 165 (258)
T ss_dssp HHHHHHHHHCT-EEEE--HHHHHHHH
T ss_pred HHHHHHHHHCCCEEEEcCHHHHHHHH
Confidence 44577888999999999999999654
No 287
>cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH).This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=22.45 E-value=92 Score=20.85 Aligned_cols=22 Identities=18% Similarity=0.265 Sum_probs=17.5
Q ss_pred HHHHHHHHHcCCCeEEEeeeec
Q psy1381 39 NHWADILASSGAKYVVLTSKHH 60 (102)
Q Consensus 39 ~~Wa~l~k~aGakyvvlTtKHH 60 (102)
.+=+..++++||+.+|+...+-
T Consensus 57 ~~K~~~A~~aGA~avIi~n~~~ 78 (122)
T cd04816 57 ADKQKVAAARGAVAVIVVNNSD 78 (122)
T ss_pred HHHHHHHHHCCCcEEEEEeCCC
Confidence 3447789999999999986544
No 288
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=22.41 E-value=1.1e+02 Score=24.20 Aligned_cols=41 Identities=27% Similarity=0.257 Sum_probs=28.9
Q ss_pred CChHHhhccCC--CCCCCHHHHHHHHHHcCCCeE-EEe-eeecCC
Q psy1381 22 FTYQDFAKDFT--AEFFDANHWADILASSGAKYV-VLT-SKHHEG 62 (102)
Q Consensus 22 ~~Y~~~a~~F~--p~~fDp~~Wa~l~k~aGakyv-vlT-tKHHdG 62 (102)
-+|+...|... -+.|||.+.++..+++||-.+ ||| .++..|
T Consensus 50 AEvKkaSPS~G~ir~d~dp~~ia~~Ye~~GAa~iSVLTd~~~F~G 94 (254)
T COG0134 50 AEVKKASPSKGLIREDFDPVEIAKAYEEGGAAAISVLTDPKYFQG 94 (254)
T ss_pred EEeecCCCCCCcccccCCHHHHHHHHHHhCCeEEEEecCccccCC
Confidence 34555555553 468999999999999999876 555 344455
No 289
>COG2039 Pcp Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase) [Posttranslational modification, protein turnover, chaperones]
Probab=22.39 E-value=64 Score=24.97 Aligned_cols=19 Identities=16% Similarity=0.034 Sum_probs=16.1
Q ss_pred CchHHHHHHHHhhcCCCCC
Q psy1381 83 RDLVDYTFGNWFTGGSPGK 101 (102)
Q Consensus 83 rDiv~el~~a~~~~Gl~~~ 101 (102)
.=-|+.++++.|++|+|+.
T Consensus 114 tlPvkamv~~~~~~GiPA~ 132 (207)
T COG2039 114 TLPVKAMVQAIREAGIPAS 132 (207)
T ss_pred cCcHHHHHHHHHHcCCChh
Confidence 3468999999999999973
No 290
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=22.35 E-value=88 Score=19.90 Aligned_cols=25 Identities=12% Similarity=0.036 Sum_probs=19.8
Q ss_pred cccCCCCCchHHHHHHHHhhcCCCC
Q psy1381 76 SMDIGPKRDLVDYTFGNWFTGGSPG 100 (102)
Q Consensus 76 s~~~~p~rDiv~el~~a~~~~Gl~~ 100 (102)
++...|+.=|-.-|.++|+++||..
T Consensus 13 ~V~vrpg~ti~d~L~~~c~kr~l~~ 37 (72)
T cd01760 13 VVPVRPGMSVRDVLAKACKKRGLNP 37 (72)
T ss_pred EEEECCCCCHHHHHHHHHHHcCCCH
Confidence 5566777777778899999999964
No 291
>PF00786 PBD: P21-Rho-binding domain; InterPro: IPR000095 The molecular bases of the versatile functions of Rho-like GTPases are still unknown. Small domains that bind Cdc42p- and/or Rho-like small GTPases. Also known as the Cdc42/Rac interactive binding (CRIB). The Cdc42/Rac interactive binding (CRIB) region has been shown to inhibit transcriptional activation and cell transformation mediated by the Ras-Rac pathway []. In fission yeast pak1+ encodes a protein kinase that interacts with Cdc42p and is involved in the control of cell polarity and mating [].; GO: 0005515 protein binding; PDB: 2OV2_O 1EES_B 2ODB_B 1E0A_B 2QME_I 1F3M_B 3PCS_H 1T84_A 2K42_A 1EJ5_A ....
Probab=22.20 E-value=66 Score=19.39 Aligned_cols=14 Identities=36% Similarity=0.743 Sum_probs=11.2
Q ss_pred HHHHHHHHHHcCCC
Q psy1381 38 ANHWADILASSGAK 51 (102)
Q Consensus 38 p~~Wa~l~k~aGak 51 (102)
|++|.++++.+|..
T Consensus 27 p~ew~~~l~~~~it 40 (59)
T PF00786_consen 27 PPEWEKLLKSSGIT 40 (59)
T ss_dssp -HHHHHHHHSCTTS
T ss_pred CHHHHhhccccCCC
Confidence 78999999999764
No 292
>TIGR03381 agmatine_aguB N-carbamoylputrescine amidase. Members of this family are N-carbamoylputrescine amidase (3.5.1.53). Bacterial genes are designated AguB. The AguAB pathway replaces SpeB for conversion of agmatine to putrescine in two steps rather than one.
Probab=22.20 E-value=3.2e+02 Score=20.17 Aligned_cols=59 Identities=10% Similarity=-0.044 Sum_probs=32.9
Q ss_pred HHHHHHHHHcCCCeEEEeeeecCCcccCCCCCCCCcccccCCCCCchHHHHHHHHhhcCC
Q psy1381 39 NHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVDYTFGNWFTGGS 98 (102)
Q Consensus 39 ~~Wa~l~k~aGakyvvlTtKHHdGF~lW~S~~~~~~~s~~~~p~rDiv~el~~a~~~~Gl 98 (102)
.++++.+++.|++-+||==---.||...+.... .............+..|.+.+++.|+
T Consensus 22 ~~~i~~A~~~gadlivfPE~~~~gy~~~~~~~~-~~~~a~~~~~~~~~~~l~~~a~~~~i 80 (279)
T TIGR03381 22 ERLVREAAARGAQIILLPELFEGPYFCKDQDED-YFALAQPVEGHPAIKRFQALAKELGV 80 (279)
T ss_pred HHHHHHHHHCCCCEEEcccccCCCCcCCccccc-hHhhcCcCCCChHHHHHHHHHHHcCc
Confidence 467777778899998865444456654432211 00010101112467778888888775
No 293
>PRK00912 ribonuclease P protein component 3; Provisional
Probab=22.19 E-value=1.1e+02 Score=22.88 Aligned_cols=26 Identities=12% Similarity=0.139 Sum_probs=22.5
Q ss_pred CCCHHHHHHHHHHcCCCeEEEeeeecC
Q psy1381 35 FFDANHWADILASSGAKYVVLTSKHHE 61 (102)
Q Consensus 35 ~fDp~~Wa~l~k~aGakyvvlTtKHHd 61 (102)
.-.+++.++.|++.|.+++++| -|.+
T Consensus 15 ~~~~~e~i~~A~~~Gl~~i~it-dH~~ 40 (237)
T PRK00912 15 YDTVLRLISEASHLGYSGIALS-NHSD 40 (237)
T ss_pred cchHHHHHHHHHHCCCCEEEEe-cCcc
Confidence 5578999999999999999997 4655
No 294
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=22.18 E-value=70 Score=28.69 Aligned_cols=21 Identities=24% Similarity=0.504 Sum_probs=17.9
Q ss_pred ccCCCCCCCHHHHHHHHHHcC
Q psy1381 29 KDFTAEFFDANHWADILASSG 49 (102)
Q Consensus 29 ~~F~p~~fDp~~Wa~l~k~aG 49 (102)
+.|..+.|||.+|+..+-+++
T Consensus 3 s~f~~~~FD~~~WIN~~~~~~ 23 (766)
T PF10191_consen 3 SAFSDDDFDVKAWINAALKSR 23 (766)
T ss_pred hhhCcCCCCHHHHHHHHhhcc
Confidence 578999999999999887753
No 295
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=22.14 E-value=1.5e+02 Score=23.99 Aligned_cols=54 Identities=11% Similarity=-0.074 Sum_probs=35.1
Q ss_pred HHHHHHcCCCeEEEeeeecCCcccCCCCCCCCcccccCCC----CCchHHHHHHHHhhc
Q psy1381 42 ADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGP----KRDLVDYTFGNWFTG 96 (102)
Q Consensus 42 a~l~k~aGakyvvlTtKHHdGF~lW~S~~~~~~~s~~~~p----~rDiv~el~~a~~~~ 96 (102)
|+.+++||+..|=|-.-|.--+.-|=|..++.. +-..|. +..++.|++++.|+.
T Consensus 156 A~ra~~aGfDgVEih~ahGyLl~QFlSp~~N~R-tD~yGGslenR~Rf~~eii~aIr~~ 213 (370)
T cd02929 156 ALRARDAGFDIVYVYAAHGYLPLQFLLPRYNKR-TDEYGGSLENRARFWRETLEDTKDA 213 (370)
T ss_pred HHHHHHcCCCEEEEcccccchHHHhhCccccCC-ccccCCChHhhhHHHHHHHHHHHHH
Confidence 456788999999998888443444555544221 223343 458888999888875
No 296
>PLN02801 beta-amylase
Probab=22.03 E-value=2.2e+02 Score=24.95 Aligned_cols=51 Identities=12% Similarity=0.165 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCCeEEEeeeecCCcccCCCCCCCCcccccCCCCCchHHHHHHHHhhcCCC
Q psy1381 39 NHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVDYTFGNWFTGGSP 99 (102)
Q Consensus 39 ~~Wa~l~k~aGakyvvlTtKHHdGF~lW~S~~~~~~~s~~~~p~rDiv~el~~a~~~~Gl~ 99 (102)
...|+.+++-|+ -+.|| +.-|=|++.. .........||+++..+|+++||+
T Consensus 330 ~pIa~m~~rh~~-~l~FT-----ClEM~D~eq~----~~~~s~PE~Lv~QV~~aa~~~Gv~ 380 (517)
T PLN02801 330 RPIARMLSRHYG-ILNFT-----CLEMRDTEQP----AEALSAPQELVQQVLSGAWREGIE 380 (517)
T ss_pred HHHHHHHHHcCC-eEEEe-----ecccccCCCC----cccCCCHHHHHHHHHHHHHHcCCc
No 297
>PLN02450 1-aminocyclopropane-1-carboxylate synthase
Probab=21.96 E-value=2e+02 Score=23.74 Aligned_cols=48 Identities=10% Similarity=0.068 Sum_probs=29.2
Q ss_pred CHHHHHHHHHHc-----CCCeEEEeeeecCCcccCCCCCCCCcccccCCCCCchHHHHHHHHhhcCCC
Q psy1381 37 DANHWADILASS-----GAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVDYTFGNWFTGGSP 99 (102)
Q Consensus 37 Dp~~Wa~l~k~a-----GakyvvlTtKHHdGF~lW~S~~~~~~~s~~~~p~rDiv~el~~a~~~~Gl~ 99 (102)
|++++.++++++ ..|-++++ ..|. ||-.. ..++-+.+|++.|+++|+.
T Consensus 174 ~~~~le~~~~~~~~~~~~~k~v~l~-nP~N-----PTG~~---------~s~e~l~~ll~~a~~~~~~ 226 (468)
T PLN02450 174 TESALEEAYQQAQKLNLKVKGVLIT-NPSN-----PLGTT---------TTRTELNLLVDFITAKNIH 226 (468)
T ss_pred CHHHHHHHHHHHHhcCCCeeEEEEe-cCCC-----CCCcc---------cCHHHHHHHHHHHHHCCcE
Confidence 557777766654 44555544 3332 22222 1477889999999998863
No 298
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=21.95 E-value=76 Score=25.02 Aligned_cols=44 Identities=9% Similarity=-0.125 Sum_probs=32.4
Q ss_pred HHHHHHHHHcCCCeEEEeeeecCCcccCCCCCCCCcccccCCCCCchHHHHHHHHhhcCCC
Q psy1381 39 NHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVDYTFGNWFTGGSP 99 (102)
Q Consensus 39 ~~Wa~l~k~aGakyvvlTtKHHdGF~lW~S~~~~~~~s~~~~p~rDiv~el~~a~~~~Gl~ 99 (102)
-++++.+-++|++.|++=.||.+. . -...+.+++++-|+++|++
T Consensus 87 ~e~i~~Al~~G~tsVm~d~s~~~~--------~---------eni~~t~~v~~~a~~~gv~ 130 (281)
T PRK06806 87 FEKIKEALEIGFTSVMFDGSHLPL--------E---------ENIQKTKEIVELAKQYGAT 130 (281)
T ss_pred HHHHHHHHHcCCCEEEEcCCCCCH--------H---------HHHHHHHHHHHHHHHcCCe
Confidence 457777888888888887776530 0 0256789999999999986
No 299
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=21.95 E-value=1.2e+02 Score=23.03 Aligned_cols=23 Identities=22% Similarity=0.138 Sum_probs=20.7
Q ss_pred CCHHHHHHHHHHcCCCeEEEeee
Q psy1381 36 FDANHWADILASSGAKYVVLTSK 58 (102)
Q Consensus 36 fDp~~Wa~l~k~aGakyvvlTtK 58 (102)
.||.+.|+.+.+.|++.+.++--
T Consensus 30 ~dp~~~a~~~~~~G~~~l~v~Dl 52 (254)
T TIGR00735 30 GDPVELAQRYDEEGADELVFLDI 52 (254)
T ss_pred CCHHHHHHHHHHcCCCEEEEEcC
Confidence 49999999999999999998744
No 300
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=21.94 E-value=1.1e+02 Score=22.08 Aligned_cols=23 Identities=22% Similarity=0.216 Sum_probs=18.6
Q ss_pred HHHHHHHHHcCCCeEEEeeeecC
Q psy1381 39 NHWADILASSGAKYVVLTSKHHE 61 (102)
Q Consensus 39 ~~Wa~l~k~aGakyvvlTtKHHd 61 (102)
...+++++++|.|++|+..=.++
T Consensus 84 ~~li~Aa~~agVk~~v~ss~~~~ 106 (233)
T PF05368_consen 84 KNLIDAAKAAGVKHFVPSSFGAD 106 (233)
T ss_dssp HHHHHHHHHHT-SEEEESEESSG
T ss_pred hhHHHhhhccccceEEEEEeccc
Confidence 67899999999999998776555
No 301
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=21.90 E-value=98 Score=23.49 Aligned_cols=17 Identities=12% Similarity=-0.189 Sum_probs=14.0
Q ss_pred chHHHHHHHHhhcCCCC
Q psy1381 84 DLVDYTFGNWFTGGSPG 100 (102)
Q Consensus 84 Div~el~~a~~~~Gl~~ 100 (102)
..++++.+.|+++|+|-
T Consensus 123 ~~~~~i~~~~~~~g~~l 139 (258)
T TIGR01949 123 RDLGMIAEICDDWGVPL 139 (258)
T ss_pred HHHHHHHHHHHHcCCCE
Confidence 46888899999999873
No 302
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=21.80 E-value=1.3e+02 Score=24.67 Aligned_cols=59 Identities=14% Similarity=0.107 Sum_probs=35.9
Q ss_pred CCCCCCCHHHHHHHHHHcCCCeEEEeeeecCCcccCCCCCCCCcccccCCCCCchHHHHHHHHhhcCCC
Q psy1381 31 FTAEFFDANHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVDYTFGNWFTGGSP 99 (102)
Q Consensus 31 F~p~~fDp~~Wa~l~k~aGakyvvlTtKHHdGF~lW~S~~~~~~~s~~~~p~rDiv~el~~a~~~~Gl~ 99 (102)
-+|..++ ++++++++++|+..+-|-...-+ .+.- ..+..+...+-+.+.++.++++|++
T Consensus 134 ~~P~~lt-~e~l~~l~~~G~~rvslGvQS~~------~~~L---~~l~R~~~~~~~~~ai~~l~~~g~~ 192 (430)
T PRK08208 134 TSPATTT-AEKLALLAARGVNRLSIGVQSFH------DSEL---HALHRPQKRADVHQALEWIRAAGFP 192 (430)
T ss_pred eCcCcCC-HHHHHHHHHcCCCEEEEecccCC------HHHH---HHhCCCCCHHHHHHHHHHHHHcCCC
Confidence 3566676 46678888888888877665543 1111 1222233445566778888888875
No 303
>PRK05481 lipoyl synthase; Provisional
Probab=21.75 E-value=1.1e+02 Score=23.86 Aligned_cols=28 Identities=32% Similarity=0.420 Sum_probs=21.7
Q ss_pred CCCCHHHHH---HHHHHcCCCeEEEeeeecC
Q psy1381 34 EFFDANHWA---DILASSGAKYVVLTSKHHE 61 (102)
Q Consensus 34 ~~fDp~~Wa---~l~k~aGakyvvlTtKHHd 61 (102)
...++++.+ +.+++.|++.++||+.+++
T Consensus 78 ~s~~~eeI~~ea~~l~~~G~kEI~L~gg~~~ 108 (289)
T PRK05481 78 LPLDPDEPERVAEAVARMGLKYVVITSVDRD 108 (289)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEEEeeCC
Confidence 346776655 4556899999999999986
No 304
>COG0223 Fmt Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]
Probab=21.73 E-value=1.8e+02 Score=23.55 Aligned_cols=29 Identities=17% Similarity=0.296 Sum_probs=26.0
Q ss_pred ccCCCCCCCHHHHHHHHHHcCCCeEEEee
Q psy1381 29 KDFTAEFFDANHWADILASSGAKYVVLTS 57 (102)
Q Consensus 29 ~~F~p~~fDp~~Wa~l~k~aGakyvvlTt 57 (102)
+.|.|++++.++|.+.+++.++.-+|.++
T Consensus 59 pv~qP~~l~~~e~~~~l~~l~~D~ivvva 87 (307)
T COG0223 59 PVFQPEKLNDPEFLEELAALDPDLIVVVA 87 (307)
T ss_pred ceeccccCCcHHHHHHHhccCCCEEEEEe
Confidence 37999999999999999999999888765
No 305
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=21.68 E-value=2.4e+02 Score=22.45 Aligned_cols=59 Identities=12% Similarity=0.075 Sum_probs=36.2
Q ss_pred CCCCCCCHHHHHHHHHHcCCCeEEEeeeecCCcccCCCCCCCCcccccCCCCCchHHHHHHHHhhcCCC
Q psy1381 31 FTAEFFDANHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVDYTFGNWFTGGSP 99 (102)
Q Consensus 31 F~p~~fDp~~Wa~l~k~aGakyvvlTtKHHdGF~lW~S~~~~~~~s~~~~p~rDiv~el~~a~~~~Gl~ 99 (102)
-+|+.+++ +.+++++++|++.+-+-....+ .+. ...+..+-..+-+.+.++.++++|++
T Consensus 93 ~~p~~l~~-e~l~~l~~~G~~rvsiGvqS~~------~~~---l~~l~r~~~~~~~~~~i~~l~~~g~~ 151 (377)
T PRK08599 93 ANPGDLTK-EKLQVLKDSGVNRISLGVQTFN------DEL---LKKIGRTHNEEDVYEAIANAKKAGFD 151 (377)
T ss_pred eCCCCCCH-HHHHHHHHcCCCEEEEecccCC------HHH---HHHcCCCCCHHHHHHHHHHHHHcCCC
Confidence 47777774 6678888899888877655443 111 11222222345566777888888765
No 306
>TIGR00060 L18_bact ribosomal protein L18, bacterial type. The archaeal and eukaryotic type rpL18 is not detectable under this model.
Probab=21.47 E-value=68 Score=22.38 Aligned_cols=41 Identities=24% Similarity=0.222 Sum_probs=30.8
Q ss_pred HHHHHHHHHcCCCeEEEeeeecCCcccCCCCCCCCcccccCCCCCchHHHHHHHHhhcCCC
Q psy1381 39 NHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVDYTFGNWFTGGSP 99 (102)
Q Consensus 39 ~~Wa~l~k~aGakyvvlTtKHHdGF~lW~S~~~~~~~s~~~~p~rDiv~el~~a~~~~Gl~ 99 (102)
...++.++++|...|||-.. || .| .--|+.|++++|+.||-
T Consensus 73 ~~la~ra~~~gi~~vvfDrg---g~---------~Y--------hGrv~A~a~~aRe~Gl~ 113 (114)
T TIGR00060 73 KLVAERLKEKGIKDVVFDRG---GY---------KY--------HGRVAALAEAAREAGLN 113 (114)
T ss_pred HHHHHHHHHCCCCEEEEeCC---CC---------cc--------hHHHHHHHHHHHHhCCC
Confidence 56788999999999886432 22 11 34699999999999984
No 307
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=21.35 E-value=94 Score=21.35 Aligned_cols=53 Identities=19% Similarity=0.078 Sum_probs=31.5
Q ss_pred HHHHHHHHHcCCCeEEEeeeecCCcccCCCCCCCCcccccCCCCCchHHHHHHHHhhcCC
Q psy1381 39 NHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVDYTFGNWFTGGS 98 (102)
Q Consensus 39 ~~Wa~l~k~aGakyvvlTtKHHdGF~lW~S~~~~~~~s~~~~p~rDiv~el~~a~~~~Gl 98 (102)
...++++++.|++++++-.-. |+....... .....--.+.++++++.+.++|+
T Consensus 74 ~~~i~~a~~lg~~~i~~~~g~------~~~~~~~~~-~~~~~~~~~~l~~l~~~a~~~gv 126 (213)
T PF01261_consen 74 KKAIDLAKRLGAKYIVVHSGR------YPSGPEDDT-EENWERLAENLRELAEIAEEYGV 126 (213)
T ss_dssp HHHHHHHHHHTBSEEEEECTT------ESSSTTSSH-HHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHhCCCceeecCcc------cccccCCCH-HHHHHHHHHHHHHHHhhhhhhcc
Confidence 788999999999999886322 211111000 00000124677788888888886
No 308
>PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen). Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A.
Probab=21.24 E-value=1.4e+02 Score=25.11 Aligned_cols=47 Identities=9% Similarity=-0.002 Sum_probs=29.8
Q ss_pred HHHHHHHHHHcCCCeEEEeeeecCCcccCCCCCCCCcccccCCCCCchHHHHHHHHhhcCCC
Q psy1381 38 ANHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVDYTFGNWFTGGSP 99 (102)
Q Consensus 38 p~~Wa~l~k~aGakyvvlTtKHHdGF~lW~S~~~~~~~s~~~~p~rDiv~el~~a~~~~Gl~ 99 (102)
.+..-+.+++.|..-++.+--|-|+|+ + ---|=|.++++-|+++|+|
T Consensus 141 ~~~ie~~i~~~G~~~iLcvltttscfa--------p-------r~~D~i~~IakiC~~~~IP 187 (389)
T PF05889_consen 141 LEAIEAKIEELGADNILCVLTTTSCFA--------P-------RLPDDIEEIAKICKEYDIP 187 (389)
T ss_dssp HHHHHHHHHHHCGGGEEEEEEESSTTT--------T-------B----HHHHHHHHHHHT--
T ss_pred HHHHHHHHHHhCCCCeEEEEEecCccC--------C-------CCCccHHHHHHHHHHcCCc
Confidence 355666777788886666666777664 1 1247788999999999998
No 309
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=21.18 E-value=73 Score=25.33 Aligned_cols=53 Identities=11% Similarity=0.028 Sum_probs=30.0
Q ss_pred HHHHHHcCCCeEEEeeeecCCcccCCCCCCCCcccccCCC----CCchHHHHHHHHhh
Q psy1381 42 ADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGP----KRDLVDYTFGNWFT 95 (102)
Q Consensus 42 a~l~k~aGakyvvlTtKHHdGF~lW~S~~~~~~~s~~~~p----~rDiv~el~~a~~~ 95 (102)
|++|++||+..|=|-+-|.-=..-+=|..+ |-.+-.+|. +.-++.|++++.|+
T Consensus 155 A~~A~~AGfDGVEIH~ahGyLl~qFLSp~~-N~RtDeYGGs~ENR~Rf~~Eii~aIr~ 211 (341)
T PF00724_consen 155 ARRAKEAGFDGVEIHAAHGYLLSQFLSPLT-NRRTDEYGGSLENRARFLLEIIEAIRE 211 (341)
T ss_dssp HHHHHHTT-SEEEEEESTTSHHHHHHSTTT----SSTTSSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCeEeecccchhhhhheeeecc-CCCchhhhhhhchhhHHHHHHHHHHHH
Confidence 456889999999999988432233444444 211223443 23566666666665
No 310
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=21.12 E-value=1.3e+02 Score=23.79 Aligned_cols=31 Identities=10% Similarity=0.240 Sum_probs=24.5
Q ss_pred CCCCCCCHHHHHHHHHHcCCCeEEEeeeecC
Q psy1381 31 FTAEFFDANHWADILASSGAKYVVLTSKHHE 61 (102)
Q Consensus 31 F~p~~fDp~~Wa~l~k~aGakyvvlTtKHHd 61 (102)
++++.-|..++++.+.++|+..+++..+..+
T Consensus 144 ~~~~~~~~~~~a~~le~~G~d~i~vh~rt~~ 174 (321)
T PRK10415 144 WAPEHRNCVEIAQLAEDCGIQALTIHGRTRA 174 (321)
T ss_pred ccCCcchHHHHHHHHHHhCCCEEEEecCccc
Confidence 4555567889999999999999999776543
No 311
>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa). This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=21.12 E-value=95 Score=21.19 Aligned_cols=19 Identities=26% Similarity=0.235 Sum_probs=15.6
Q ss_pred HHHHHHcCCCeEEEeeeec
Q psy1381 42 ADILASSGAKYVVLTSKHH 60 (102)
Q Consensus 42 a~l~k~aGakyvvlTtKHH 60 (102)
+..++++||+.+|+.-.+-
T Consensus 51 ~~~Aq~aGA~avII~n~~~ 69 (118)
T cd02127 51 AINAQKAGALAVIITDVNN 69 (118)
T ss_pred HHHHHHCCCcEEEEEECCC
Confidence 6779999999999975443
No 312
>PRK08609 hypothetical protein; Provisional
Probab=21.09 E-value=1.4e+02 Score=25.78 Aligned_cols=27 Identities=15% Similarity=0.341 Sum_probs=22.7
Q ss_pred CCCCCCHHHHHHHHHHcCCCeEEEeee
Q psy1381 32 TAEFFDANHWADILASSGAKYVVLTSK 58 (102)
Q Consensus 32 ~p~~fDp~~Wa~l~k~aGakyvvlTtK 58 (102)
+-...++++.++.|++.|.+++++|--
T Consensus 345 sDg~~sleemv~~A~~~Gl~~i~iTdH 371 (570)
T PRK08609 345 SDGAFSIEEMVEACIAKGYEYMAITDH 371 (570)
T ss_pred CCCCCCHHHHHHHHHHCCCCEEEEeCC
Confidence 334668999999999999999999853
No 313
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=21.04 E-value=1.7e+02 Score=23.81 Aligned_cols=53 Identities=9% Similarity=-0.030 Sum_probs=32.2
Q ss_pred HHHHHcCCCeEEEeeeecC-CcccCCCCCCCCcccccCCC----CCchHHHHHHHHhhc
Q psy1381 43 DILASSGAKYVVLTSKHHE-GYTLWPSKYAFSWNSMDIGP----KRDLVDYTFGNWFTG 96 (102)
Q Consensus 43 ~l~k~aGakyvvlTtKHHd-GF~lW~S~~~~~~~s~~~~p----~rDiv~el~~a~~~~ 96 (102)
+++++||+..|=|-.-||. =+.-|=|..++. .+-..|. +..++.|++++.|+.
T Consensus 157 ~ra~~AGfDgVEih~ah~GyLl~qFLSp~~N~-RtDeyGGslenR~rf~~eii~~vr~~ 214 (382)
T cd02931 157 VIAKEAGFDGVEIHAVHEGYLLDQFTISLFNK-RTDKYGGSLENRLRFAIEIVEEIKAR 214 (382)
T ss_pred HHHHHcCCCEEEEeccccChHHHHhcCCccCC-CCCcCCCCHHHHhHHHHHHHHHHHHh
Confidence 4566899999998777753 233444444311 1223333 457888888888864
No 314
>cd02423 Peptidase_C39G A sub-family of peptidase family C39. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is conserved in this sub-family of proteins with a single peptidase domain, which are
Probab=20.87 E-value=2.4e+02 Score=18.01 Aligned_cols=43 Identities=21% Similarity=0.081 Sum_probs=32.4
Q ss_pred HHHHHhCC-CCCChHHhhccCC--CCCCCHHHHHHHHHHcCCCeEE
Q psy1381 12 KFMERNYK-PGFTYQDFAKDFT--AEFFDANHWADILASSGAKYVV 54 (102)
Q Consensus 12 ~~~~~~~~-~~~~Y~~~a~~F~--p~~fDp~~Wa~l~k~aGakyvv 54 (102)
.++.+.|+ -..+-.++..... ++.+++.++.+++++.|.+--+
T Consensus 18 ~~~~~~~g~~~~~~~~l~~~~~~~~~~~s~~~l~~~a~~~Gl~~~~ 63 (129)
T cd02423 18 ATLLRYYGGINITEQEVLKLMLIRSEGFSMLDLKRYAEALGLKANG 63 (129)
T ss_pred HHHHHhcCCCCCCHHHHHHHhCcccCCcCHHHHHHHHHHCCCcceE
Confidence 66777887 7778788876653 4679999999999998865433
No 315
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=20.53 E-value=95 Score=19.98 Aligned_cols=33 Identities=15% Similarity=0.213 Sum_probs=26.3
Q ss_pred CCCCCCCHHHHHHHHHHcCCCeEEEeeeecCCc
Q psy1381 31 FTAEFFDANHWADILASSGAKYVVLTSKHHEGY 63 (102)
Q Consensus 31 F~p~~fDp~~Wa~l~k~aGakyvvlTtKHHdGF 63 (102)
++++.-+..+.++.+++.|++-+++|.....-.
T Consensus 62 ~sg~~~~~~~~~~~ak~~g~~vi~iT~~~~~~l 94 (131)
T PF01380_consen 62 YSGETRELIELLRFAKERGAPVILITSNSESPL 94 (131)
T ss_dssp SSSTTHHHHHHHHHHHHTTSEEEEEESSTTSHH
T ss_pred ccccchhhhhhhHHHHhcCCeEEEEeCCCCCch
Confidence 355566678899999999999999998776533
No 316
>PF11684 DUF3280: Protein of unknown function (DUF2380); InterPro: IPR021698 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=20.48 E-value=91 Score=22.34 Aligned_cols=23 Identities=26% Similarity=0.274 Sum_probs=18.2
Q ss_pred HHHHHHHHHcCCCeEEEeeeecC
Q psy1381 39 NHWADILASSGAKYVVLTSKHHE 61 (102)
Q Consensus 39 ~~Wa~l~k~aGakyvvlTtKHHd 61 (102)
.-=+++++++||.|+++-.-|--
T Consensus 70 gC~~~~Ar~~GAd~~lvG~VqKv 92 (140)
T PF11684_consen 70 GCEARIARELGADYVLVGEVQKV 92 (140)
T ss_pred CHHHHHHHHcCCCEEEEEEEech
Confidence 55678999999999988665543
No 317
>cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like. This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase
Probab=20.47 E-value=96 Score=21.80 Aligned_cols=21 Identities=19% Similarity=0.132 Sum_probs=16.5
Q ss_pred HHHHHHHHcCCCeEEEeeeec
Q psy1381 40 HWADILASSGAKYVVLTSKHH 60 (102)
Q Consensus 40 ~Wa~l~k~aGakyvvlTtKHH 60 (102)
+=+..++++||+.+|+.-..-
T Consensus 75 ~K~~nA~~aGA~aVIIyn~~~ 95 (138)
T cd02122 75 EKIKLAAERNASAVVIYNNPG 95 (138)
T ss_pred HHHHHHHHCCCcEEEEEECCC
Confidence 346789999999999975543
No 318
>cd07908 Mn_catalase_like Manganese catalase-like protein, ferritin-like diiron-binding domain. This uncharacterized bacterial protein family has a ferritin-like domain similar to that of the manganese catalase protein of Lactobacillus plantarum and the bll3758 protein of Bradyrhizobium japonicum. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=20.43 E-value=67 Score=22.24 Aligned_cols=47 Identities=11% Similarity=0.248 Sum_probs=30.3
Q ss_pred CCChHHHHHHHHhC-CCCCChHHhhccC----C-----------------CCCCCHHHHHHHHHHcCCC
Q psy1381 5 NPNSTVTKFMERNY-KPGFTYQDFAKDF----T-----------------AEFFDANHWADILASSGAK 51 (102)
Q Consensus 5 ~~~~~y~~~~~~~~-~~~~~Y~~~a~~F----~-----------------p~~fDp~~Wa~l~k~aGak 51 (102)
.||+.|++++.+.| |+..+|.....-| . -|.=..+.|++++...|..
T Consensus 9 ~~~~~~~~~~~~~~~g~~~E~~ai~~Y~y~~~~~~~~~~~~k~~f~~lA~eE~~H~~~l~~~i~~lgg~ 77 (154)
T cd07908 9 GPNPRYAELLLDDYAGTNSELTAISQYIYQHLISEEKYPEIAETFLGIAIVEMHHLEILGQLIVLLGGD 77 (154)
T ss_pred CCChHHHHHHHHHhCCcchHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 69999999999999 4554444332211 1 1222347888888888764
No 319
>cd07573 CPA N-carbamoylputrescine amidohydrolase (CPA) (class 11 nitrilases). CPA (EC 3.5.1.53, also known as N-carbamoylputrescine amidase and carbamoylputrescine hydrolase) converts N-carbamoylputrescine to putrescine, a step in polyamine biosynthesis in plants and bacteria. This subgroup includes Arabidopsis thaliana CPA, also known as nitrilase-like 1 (NLP1), and Pseudomonas aeruginosa AguB. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 11. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer; P. aeruginosa AugB is a homohexamer, Arabidopsis thaliana NLP1 is a homooctomer.
Probab=20.36 E-value=2.8e+02 Score=20.65 Aligned_cols=58 Identities=12% Similarity=-0.049 Sum_probs=34.5
Q ss_pred HHHHHHHHHcCCCeEEEeeeecCCcccCCCCCCCCcccccC-CCCCchHHHHHHHHhhcCC
Q psy1381 39 NHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDI-GPKRDLVDYTFGNWFTGGS 98 (102)
Q Consensus 39 ~~Wa~l~k~aGakyvvlTtKHHdGF~lW~S~~~~~~~s~~~-~p~rDiv~el~~a~~~~Gl 98 (102)
.++++.+.+.|+.-+||=--.-.||..++.... +..... ....+.+..|.+.++++|+
T Consensus 22 ~~~i~~A~~~gadlivfPE~~l~g~~~~~~~~~--~~~~~~~~~~~~~~~~l~~la~~~~i 80 (284)
T cd07573 22 EELVREAAAQGAQIVCLQELFETPYFCQEEDED--YFDLAEPPIPGPTTARFQALAKELGV 80 (284)
T ss_pred HHHHHHHHHCCCcEEEccccccCCCCcccccch--hHHhccccCCCHHHHHHHHHHHHCCE
Confidence 356666777899887765444567766553322 101111 1234577888888888875
No 320
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=20.33 E-value=1.1e+02 Score=23.92 Aligned_cols=50 Identities=14% Similarity=0.033 Sum_probs=34.0
Q ss_pred CCCCHHHHHHHHHHcCC-----CeEEEeeeecC--CcccCCCCCCCCcccccCCCCCchHHHHHHHHhhcCCC
Q psy1381 34 EFFDANHWADILASSGA-----KYVVLTSKHHE--GYTLWPSKYAFSWNSMDIGPKRDLVDYTFGNWFTGGSP 99 (102)
Q Consensus 34 ~~fDp~~Wa~l~k~aGa-----kyvvlTtKHHd--GF~lW~S~~~~~~~s~~~~p~rDiv~el~~a~~~~Gl~ 99 (102)
-+++|++..+++.+.|. +.|.|+--|-. |- ....+=++++.+-||++||+
T Consensus 104 G~l~~~~l~~~~~~~~~h~~~~~~v~le~t~~~~GG~----------------~~s~~el~ai~~~a~~~gl~ 160 (290)
T PF01212_consen 104 GKLTPEDLEAAIEEHGAHHPQPAVVSLENTTELAGGT----------------VYSLEELRAISELAREHGLP 160 (290)
T ss_dssp TBB-HHHHHHHHHHHTGTSGGEEEEEEESSBTTTTSB-------------------HHHHHHHHHHHHHHT-E
T ss_pred CCCCHHHHHHHhhhccccCCCccEEEEEecCcCCCCe----------------eCCHHHHHHHHHHHHhCceE
Confidence 57999999999999886 55555543332 21 11457789999999999986
No 321
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=20.28 E-value=2.2e+02 Score=23.51 Aligned_cols=50 Identities=12% Similarity=0.123 Sum_probs=37.0
Q ss_pred HHHHHHHHHcCCCeEEEeeeecCCcccCCCCCCCCcccccCCCCCchHHHHHHHHhhcCCC
Q psy1381 39 NHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVDYTFGNWFTGGSP 99 (102)
Q Consensus 39 ~~Wa~l~k~aGakyvvlTtKHHdGF~lW~S~~~~~~~s~~~~p~rDiv~el~~a~~~~Gl~ 99 (102)
-+.|+.++++|++++= . ..|...++ +| ...|++.+-++.|.+++++.|||
T Consensus 118 l~~A~~lk~~g~~~~r------~--g~~kpRts-p~--sf~G~g~~gl~~L~~~~~e~Gl~ 167 (352)
T PRK13396 118 VETAKRVKAAGAKFLR------G--GAYKPRTS-PY--AFQGHGESALELLAAAREATGLG 167 (352)
T ss_pred HHHHHHHHHcCCCEEE------e--eeecCCCC-Cc--ccCCchHHHHHHHHHHHHHcCCc
Confidence 4567888889988854 1 45666665 32 23567788999999999999997
No 322
>TIGR03537 DapC succinyldiaminopimelate transaminase. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.
Probab=20.25 E-value=2.3e+02 Score=21.84 Aligned_cols=17 Identities=18% Similarity=0.102 Sum_probs=14.4
Q ss_pred CCchHHHHHHHHhhcCC
Q psy1381 82 KRDLVDYTFGNWFTGGS 98 (102)
Q Consensus 82 ~rDiv~el~~a~~~~Gl 98 (102)
.++-+.+|++.|+++|+
T Consensus 154 ~~~~~~~l~~~a~~~~~ 170 (350)
T TIGR03537 154 PRSYLKETIAMCREHGI 170 (350)
T ss_pred CHHHHHHHHHHHHHcCc
Confidence 46779999999999886
No 323
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=20.14 E-value=3.2e+02 Score=19.19 Aligned_cols=46 Identities=11% Similarity=-0.009 Sum_probs=32.4
Q ss_pred CCCCHHHHHHHHHHcCCCeEEEeeeecCCcccCCCCCCCCcccccCCCCCchHHHHHHHHhhcCCC
Q psy1381 34 EFFDANHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVDYTFGNWFTGGSP 99 (102)
Q Consensus 34 ~~fDp~~Wa~l~k~aGakyvvlTtKHHdGF~lW~S~~~~~~~s~~~~p~rDiv~el~~a~~~~Gl~ 99 (102)
-.-.|++.++.+++-++.-+.+.+ -.+.....++++++.+|++|+.
T Consensus 35 ~~v~~e~~v~aa~~~~adiVglS~--------------------L~t~~~~~~~~~~~~l~~~gl~ 80 (128)
T cd02072 35 VLSPQEEFIDAAIETDADAILVSS--------------------LYGHGEIDCKGLREKCDEAGLK 80 (128)
T ss_pred CCCCHHHHHHHHHHcCCCEEEEec--------------------cccCCHHHHHHHHHHHHHCCCC
Confidence 345679999999999999888743 1122345677777777777773
No 324
>PF14117 DUF4287: Domain of unknown function (DUF4287)
Probab=20.06 E-value=87 Score=19.53 Aligned_cols=16 Identities=13% Similarity=0.287 Sum_probs=13.5
Q ss_pred CCCCHHHHHHHHHHcC
Q psy1381 34 EFFDANHWADILASSG 49 (102)
Q Consensus 34 ~~fDp~~Wa~l~k~aG 49 (102)
+--.+++|++++++.|
T Consensus 13 TGk~~~~W~~~~~~~~ 28 (61)
T PF14117_consen 13 TGKTLDEWLALAREGG 28 (61)
T ss_pred HCcCHHHHHHHHHHhC
Confidence 3457899999999997
Done!